Query 017031
Match_columns 378
No_of_seqs 300 out of 1348
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:00:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2833 Mevalonate pyrophospha 100.0 5.2E-93 1.1E-97 669.9 31.7 349 6-376 44-395 (395)
2 PLN02407 diphosphomevalonate d 100.0 1.8E-67 4E-72 512.8 31.1 295 7-301 41-339 (343)
3 TIGR01240 mevDPdecarb diphosph 100.0 1.5E-57 3.3E-62 443.0 29.9 269 4-294 33-304 (305)
4 COG3407 MVD1 Mevalonate pyroph 100.0 6E-56 1.3E-60 428.9 27.2 273 6-301 40-315 (329)
5 COG0083 ThrB Homoserine kinase 100.0 3.1E-28 6.7E-33 234.4 25.4 247 3-295 23-277 (299)
6 PRK01212 homoserine kinase; Pr 99.9 6.3E-26 1.4E-30 220.7 24.6 248 2-294 22-280 (301)
7 PTZ00299 homoserine kinase; Pr 99.9 2.4E-25 5.3E-30 219.6 24.7 254 2-296 26-302 (336)
8 TIGR00191 thrB homoserine kina 99.9 3.3E-24 7.2E-29 209.1 25.5 249 2-293 19-280 (302)
9 PRK14611 4-diphosphocytidyl-2- 99.9 1.5E-24 3.3E-29 208.9 22.8 226 3-281 31-256 (275)
10 PRK00128 ipk 4-diphosphocytidy 99.9 5E-24 1.1E-28 206.0 22.9 241 2-295 31-274 (286)
11 PRK03188 4-diphosphocytidyl-2- 99.9 9E-24 1.9E-28 205.8 22.9 241 3-292 30-275 (300)
12 PRK02534 4-diphosphocytidyl-2- 99.9 2.2E-23 4.7E-28 204.3 23.4 250 6-296 36-293 (312)
13 TIGR00144 beta_RFAP_syn beta-R 99.9 6.6E-23 1.4E-27 201.9 25.4 246 5-295 31-303 (324)
14 PLN02451 homoserine kinase 99.9 6.5E-23 1.4E-27 205.1 24.8 223 34-296 114-344 (370)
15 PRK14616 4-diphosphocytidyl-2- 99.9 1.4E-22 3E-27 196.4 22.1 243 2-297 32-277 (287)
16 TIGR00154 ispE 4-diphosphocyti 99.9 2.9E-22 6.4E-27 194.8 22.1 242 5-295 33-276 (293)
17 COG1947 IspE 4-diphosphocytidy 99.9 1.4E-22 3E-27 194.3 18.9 210 34-296 66-275 (289)
18 PRK14613 4-diphosphocytidyl-2- 99.9 5.6E-22 1.2E-26 193.1 21.6 216 34-296 74-289 (297)
19 PRK14615 4-diphosphocytidyl-2- 99.9 1.2E-21 2.6E-26 190.8 22.1 244 8-293 42-287 (296)
20 PRK14608 4-diphosphocytidyl-2- 99.9 2E-21 4.4E-26 188.7 22.1 207 34-294 70-279 (290)
21 PRK14612 4-diphosphocytidyl-2- 99.9 1.7E-21 3.7E-26 187.8 21.3 233 4-295 33-266 (276)
22 PTZ00298 mevalonate kinase; Pr 99.9 3.8E-21 8.3E-26 189.7 23.2 259 2-297 34-313 (328)
23 PRK14610 4-diphosphocytidyl-2- 99.9 4.9E-21 1.1E-25 185.4 21.9 237 6-296 36-273 (283)
24 PRK00650 4-diphosphocytidyl-2- 99.9 1.1E-20 2.5E-25 182.5 20.5 197 33-295 60-259 (288)
25 PRK03926 mevalonate kinase; Pr 99.9 3.5E-20 7.7E-25 180.3 24.1 239 3-293 26-282 (302)
26 PRK01123 shikimate kinase; Pro 99.9 3.3E-20 7.3E-25 179.4 23.6 227 5-293 26-266 (282)
27 PRK00343 ipk 4-diphosphocytidy 99.9 1E-19 2.2E-24 175.1 22.7 225 5-295 38-264 (271)
28 PRK14614 4-diphosphocytidyl-2- 99.8 1.4E-19 3.1E-24 174.8 21.6 228 7-292 37-268 (280)
29 TIGR01920 Shik_kin_archae shik 99.8 6.9E-19 1.5E-23 168.5 23.8 224 5-293 20-254 (261)
30 COG1907 Predicted archaeal sug 99.8 2.6E-19 5.6E-24 169.5 20.4 212 68-296 70-291 (312)
31 PRK14609 4-diphosphocytidyl-2- 99.8 2.2E-19 4.8E-24 172.7 20.3 204 21-281 49-254 (269)
32 COG1685 Archaeal shikimate kin 99.8 3.7E-19 8E-24 166.9 17.1 224 5-293 26-260 (278)
33 TIGR00549 mevalon_kin mevalona 99.8 2.8E-18 6E-23 164.4 22.3 182 69-277 78-272 (273)
34 PRK05905 hypothetical protein; 99.8 2.1E-18 4.6E-23 164.5 18.5 187 34-278 66-254 (258)
35 PRK03817 galactokinase; Provis 99.8 4E-17 8.7E-22 162.4 26.7 211 68-295 85-329 (351)
36 COG1577 ERG12 Mevalonate kinas 99.8 2.1E-16 4.5E-21 153.9 24.1 251 2-295 24-297 (307)
37 PRK00555 galactokinase; Provis 99.8 2.9E-16 6.4E-21 157.1 25.6 208 68-296 90-342 (363)
38 PRK04181 4-diphosphocytidyl-2- 99.7 4.5E-17 9.8E-22 155.5 17.4 148 7-179 34-184 (257)
39 TIGR01220 Pmev_kin_Gr_pos phos 99.7 1.1E-15 2.3E-20 152.7 26.2 232 35-293 78-345 (358)
40 PRK05322 galactokinase; Provis 99.7 1.7E-15 3.8E-20 152.7 27.3 207 68-296 111-367 (387)
41 TIGR00131 gal_kin galactokinas 99.7 2.2E-15 4.8E-20 151.9 23.4 227 35-299 91-369 (386)
42 PRK05101 galactokinase; Provis 99.6 6.3E-14 1.4E-18 141.2 25.8 226 35-299 94-365 (382)
43 PLN02677 mevalonate kinase 99.6 2E-13 4.3E-18 137.4 22.2 180 68-277 128-344 (387)
44 PRK13412 fkp bifunctional fuco 99.5 7.4E-13 1.6E-17 144.9 20.4 211 68-293 725-951 (974)
45 COG0153 GalK Galactokinase [Ca 99.5 2.1E-11 4.5E-16 120.8 23.8 215 69-305 115-378 (390)
46 PLN02521 galactokinase 99.4 4.8E-11 1E-15 123.8 26.8 66 68-133 148-224 (497)
47 KOG1537 Homoserine kinase [Ami 99.4 2.5E-12 5.5E-17 120.4 11.7 205 68-296 93-333 (355)
48 COG2605 Predicted kinase relat 99.4 1.4E-10 3E-15 110.6 21.0 210 69-295 89-315 (333)
49 PLN02865 galactokinase 99.3 5.6E-10 1.2E-14 113.7 24.8 213 68-296 129-396 (423)
50 PF00288 GHMP_kinases_N: GHMP 99.2 7.6E-12 1.6E-16 95.2 4.7 59 71-129 1-67 (67)
51 TIGR01219 Pmev_kin_ERG8 phosph 99.2 1.4E-09 3.1E-14 111.4 21.8 232 34-290 87-429 (454)
52 COG1829 Predicted archaeal kin 99.2 1.2E-09 2.5E-14 103.7 18.9 210 9-280 38-255 (283)
53 KOG1511 Mevalonate kinase MVK/ 99.1 3.8E-09 8.2E-14 102.9 16.7 198 70-296 132-362 (397)
54 COG4542 PduX Protein involved 98.9 1.8E-07 3.9E-12 87.8 19.0 187 65-280 79-265 (293)
55 PTZ00290 galactokinase; Provis 98.9 5.4E-07 1.2E-11 93.0 24.3 36 68-103 133-168 (468)
56 PF08544 GHMP_kinases_C: GHMP 98.8 1E-08 2.2E-13 80.7 6.1 82 203-295 1-84 (85)
57 KOG4644 L-fucose kinase [Carbo 95.6 0.35 7.6E-06 50.2 14.4 214 67-299 689-924 (948)
58 COG3890 ERG8 Phosphomevalonate 93.2 0.11 2.3E-06 50.2 4.2 52 81-132 107-171 (337)
59 KOG0631 Galactokinase [Carbohy 74.9 4.2 9E-05 42.3 4.6 48 68-115 141-191 (489)
60 KOG4519 Phosphomevalonate kina 61.9 9.6 0.00021 38.0 3.8 51 82-132 153-226 (459)
61 PF14453 ThiS-like: ThiS-like 40.2 48 0.001 24.5 3.7 38 22-81 2-40 (57)
62 KOG0631 Galactokinase [Carbohy 34.7 94 0.002 32.6 6.1 73 212-297 387-461 (489)
63 TIGR00162 conserved hypothetic 31.5 68 0.0015 29.3 4.2 31 89-119 128-158 (188)
64 PF00382 TFIIB: Transcription 29.1 71 0.0015 23.8 3.3 29 87-115 36-64 (71)
65 TIGR00161 conserved hypothetic 24.0 1.1E+02 0.0023 29.0 4.2 29 90-118 185-213 (238)
66 PF13134 DUF3948: Protein of u 23.0 71 0.0015 21.0 1.9 19 82-100 15-33 (35)
67 KOG1576 Predicted oxidoreducta 22.7 56 0.0012 32.0 2.0 9 347-355 98-106 (342)
68 KOG2525 Folylpolyglutamate syn 21.8 79 0.0017 33.2 3.0 63 20-86 113-180 (496)
69 PTZ00086 40S ribosomal protein 20.1 6E+02 0.013 22.4 8.4 24 10-33 20-43 (147)
No 1
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=5.2e-93 Score=669.87 Aligned_cols=349 Identities=54% Similarity=0.838 Sum_probs=317.9
Q ss_pred CCCeeEEE--EecCCCCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCccc
Q 017031 6 SPLIPITS--VLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAG 83 (378)
Q Consensus 6 ~~~~~~t~--v~~~~~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaG 83 (378)
..|+|.|+ +.++|++|++||||++++++++|+++|++++|++++..++++..+ +....+++||.|+||||+|||
T Consensus 44 D~L~t~Tt~~~s~~fe~dr~wLNGk~~~i~~~R~q~cl~e~r~~~~d~~~~~~~~----~~~~~~~lHI~S~nNFPtAAG 119 (395)
T KOG2833|consen 44 DDLCTLTTAVVSPSFEEDRMWLNGKEVPISNKRYQRCLREIRRLARDREESEASL----PSNGPLKLHIASVNNFPTAAG 119 (395)
T ss_pred ccceeeeeEeeccccccceeEECCceeccccHHHHHHHHHHHHHhhhhhhhhccc----CcCCCeeEEEEecCCCcchhh
Confidence 45666666 678889999999999999989999999999999998876655432 223468999999999999999
Q ss_pred CccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEE
Q 017031 84 LASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIA 163 (378)
Q Consensus 84 LgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vil 163 (378)
|||||||+||+++||+++|+++.+++||+++||+||||||||+|||||.|.+|+.+||+||+++|+.|..|||+++++|+
T Consensus 120 LASSAAG~Aalv~alarly~l~~~~~els~iAR~GSGSACRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ilil 199 (395)
T KOG2833|consen 120 LASSAAGFAALVLALARLYGLDDSPEELSRIARQGSGSACRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILIL 199 (395)
T ss_pred hhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccCchhhhhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCch
Q 017031 164 VVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDT 243 (378)
Q Consensus 164 vv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~ 243 (378)
|+++.+|+++||+|||++++||.++++|+++++++|+.+|.+||.++||+.|++++|+|||+|||+|++++||++|||+.
T Consensus 200 Vvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri~~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~ 279 (395)
T KOG2833|consen 200 VVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRIQQMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDT 279 (395)
T ss_pred EeccccccccccHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCCCCCCCccccccCcchhhhhccCCCccc
Q 017031 244 SHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKD 323 (378)
Q Consensus 244 s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (378)
+++||+.||++|+..|.+.+|||||||||.++|+.+++..+ +++.+.+.|++..+|+ ..|..|+.+.++..+..
T Consensus 280 S~~iI~~vh~~N~~~G~t~vAYTFDAGPNAvl~~l~e~~~~-~l~~~~~~f~~~p~~d-k~y~~~~~~~~~~~~~~---- 353 (395)
T KOG2833|consen 280 SWRIISLVHEFNASAGGTRVAYTFDAGPNAVLIVLEENVSQ-LLAAVLKVFPPVPGWD-KTYGKGLLEQFKVAAES---- 353 (395)
T ss_pred hHHHHHHHHHHHhccCCeeEEEEecCCCceEEEEhhhhHHH-HHHHHHHhcCCCCCcc-ceeeeccccccCccccc----
Confidence 99999999999988899999999999999999999999997 9999999999999998 77888876555433222
Q ss_pred ccCCCCCcccc-cccccccCCCcceEEEecCCCCceecCCCcccccCCCCCCCC
Q 017031 324 IEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 376 (378)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~~g~gp~~~~~~~~~l~~~~~g~~~ 376 (378)
.+.+ .+.. .++|+|||+|+||.||+ |.+++++|||| .|+||
T Consensus 354 -------~~~~~~l~~---~~~vs~~I~t~vG~GP~-l~~~~~~Li~~-~GlPk 395 (395)
T KOG2833|consen 354 -------SSIKDSLGS---QGGVSYIILTRVGGGPK-LQEQNESLIDP-SGLPK 395 (395)
T ss_pred -------cchhhhccc---cCCeeEEEEecCCCCCc-ccCchhhhcCC-CCCCC
Confidence 1222 2332 39999999999999999 77788999998 59997
No 2
>PLN02407 diphosphomevalonate decarboxylase
Probab=100.00 E-value=1.8e-67 Score=512.80 Aligned_cols=295 Identities=77% Similarity=1.157 Sum_probs=266.2
Q ss_pred CCeeEEEEec--CCCCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccC
Q 017031 7 PLIPITSVLP--QPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 84 (378)
Q Consensus 7 ~~~~~t~v~~--~~~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGL 84 (378)
+++|+|+|.. +.++|++||||++++....|+++||+++|++++..+.++.+..++++.+...+++|+++|+||+++||
T Consensus 41 ~~~T~Ttv~~~~~~~~D~~~LNG~~~~~~~~rv~~~l~~~r~~~~~~~~~~~~~~i~~~~~~~~~~~I~S~N~~PtaaGL 120 (343)
T PLN02407 41 HLCATTTVAVSPSFDQDRLWLNGKEISLSGGRYQNCLREIRARATDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGL 120 (343)
T ss_pred cceeeEEEEECCCCCCCEEEECCEecCcccHHHHHHHHHHHHHhcccccccccccccccccccccEEEEeccCCccccch
Confidence 6999999875 45679999999987766779999999999998876555555555545555668999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEE
Q 017031 85 ASSAAGFACLVFSLAKLMNLKEN-QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIA 163 (378)
Q Consensus 85 gSSAA~aAAlv~Al~~l~~l~ls-~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vil 163 (378)
|||||++||++.|++++|+++++ .++|+.+||+||||+|||+|||||.|.+|...|+.||+++++.++.+||+|+++++
T Consensus 121 aSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~GSGSa~rS~~Gg~v~w~~G~~~d~~ds~A~~i~~~~~~~dl~~~i~ 200 (343)
T PLN02407 121 ASSAAGFACLVFALAKLMNVKEDFPGELSAIARQGSGSACRSLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIA 200 (343)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhccChHHHHHhhCCeEEecCCCCCCCCceeEEECCCccCCccceEEEE
Confidence 99999999999999999999999 99999999999999999999999999999777899999999998889999999999
Q ss_pred EECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCch
Q 017031 164 VVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDT 243 (378)
Q Consensus 164 vv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~ 243 (378)
|+++.+|+++||+||+.+++||++|+.|+++++++++.+|.+||+++||+.|++++|+|+|+||++|++++||++||+|.
T Consensus 201 vv~~~~K~vsSt~GM~~tv~TSp~~~~w~~~~~~~~~~~~~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~ 280 (343)
T PLN02407 201 VVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDT 280 (343)
T ss_pred EEcCCcCCCCchHHHHHhhhcChhHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChH
Confidence 99999999999999999999999999999986799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCC-CCCCCC
Q 017031 244 SHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP-PNSETD 301 (378)
Q Consensus 244 s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~-~~~~~~ 301 (378)
+.++|+.|+++|++.|...++||+||||||++|+++++..++|++.+.++|+ ...+|+
T Consensus 281 S~~ii~~V~~~r~~~g~~~v~yT~DAGPNv~vl~~~~~~~~~v~~~~~~~~~~~~~~~~ 339 (343)
T PLN02407 281 SRRIISLVEKWNRSEGTPQVAYTFDAGPNAVLIALNRKVAAQLLQRLLYYFPPSSDTDL 339 (343)
T ss_pred HHHHHHHHHHHHHhcCCccEEEEecCCCCEEEEEChhhhHHHHHHHHHHhcCCCccccc
Confidence 9999999999988767645999999999999999999988558876666554 444443
No 3
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=100.00 E-value=1.5e-57 Score=443.01 Aligned_cols=269 Identities=40% Similarity=0.576 Sum_probs=249.2
Q ss_pred cCCCCeeEEEEecC--CCCCeEEECCeeccc-CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCC
Q 017031 4 SASPLIPITSVLPQ--PLPSVLALTKIEISL-GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPT 80 (378)
Q Consensus 4 ~~~~~~~~t~v~~~--~~~D~i~lnG~~~~~-~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~ 80 (378)
++..++|+|+|..+ .+.|++||||++... +.+|+++|++.+|+.++. ..+++|+++|+||+
T Consensus 33 tLd~~~T~ttv~~~~~~~~d~~~lnG~~~~~~~~~~v~~~l~~~~~~~~~----------------~~~v~I~~~n~iP~ 96 (305)
T TIGR01240 33 TLSQLRTLTSVAFADEFERDTFYLNGTLQHSIDNEKTSNCLDDFRQLRKE----------------QEKLHIVSQNNFPT 96 (305)
T ss_pred EcCCCccEEEEEECCCCCcceEEECCcCCCCcchHHHHHHHHHHHHhcCC----------------CCceEEEEecCCCC
Confidence 56789999999865 457999999976443 477999999999998764 35799999999999
Q ss_pred cccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceE
Q 017031 81 AAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVI 160 (378)
Q Consensus 81 aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~ 160 (378)
++|||||||++||++.|++++++++++.+||+++|++|+||+|||+|||||.|..|. |+.++++++++++.+||++++
T Consensus 97 ~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gsGsa~~s~~GG~v~~~~g~--~~~~s~a~~i~~~~~~~~~~~ 174 (305)
T TIGR01240 97 AAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSGSACRSLFGGYVAWEKGK--DDHSSAAVQVADDSDWPQXAM 174 (305)
T ss_pred CCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCeeeeeecCeEEEEcCC--CCCCeeEEECCCccccccceE
Confidence 999999999999999999999999999999999999999999999999999999884 778999999998889999999
Q ss_pred EEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCcccc
Q 017031 161 IIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYM 240 (378)
Q Consensus 161 vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl 240 (378)
+++++|+.+|+++||++|+.+++||++|+.|+++ +..++..|++||+++||+.|++++|.|+++||++|++++||++||
T Consensus 175 ~v~vv~~~~k~vsSt~gm~~~~~ts~~~~~~v~~-~~~~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~ 253 (305)
T TIGR01240 175 CVLVVNDIKKDVSSRQGMQLTVATSELFKEWIEH-VVPDFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYL 253 (305)
T ss_pred EEEEcCCCCCCCCCHHHHHHhhhcCccHHHHHHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 9999999999999999999999999999999998 466899999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhC
Q 017031 241 NDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFF 294 (378)
Q Consensus 241 ~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f 294 (378)
+|.+.++|+.|+++|+ .|.. ++||+||||||+++|++++.++ +.+.+++.|
T Consensus 254 ~~~s~~ii~~v~~~r~-~g~~-~~~T~DAGpNv~vl~~~~~~~~-v~~~~~~~~ 304 (305)
T TIGR01240 254 NDTSKRAMSAVHTLRQ-GGTI-CYFTMDAGPNVKVLYLAENLSK-LFEFIYKLF 304 (305)
T ss_pred CHHHHHHHHHHHHHHh-CCCc-EEEEEcCCCCEEEEEccccHHH-HHHHHHHhc
Confidence 9999999999999976 4765 9999999999999999999988 999988876
No 4
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=100.00 E-value=6e-56 Score=428.92 Aligned_cols=273 Identities=36% Similarity=0.543 Sum_probs=250.7
Q ss_pred CCCeeEEEE---ecCCCCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcc
Q 017031 6 SPLIPITSV---LPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 82 (378)
Q Consensus 6 ~~~~~~t~v---~~~~~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aa 82 (378)
..+++.|++ .+..++|++||||++++..++|+++||+.+|++++. .++++|+++|++|+|+
T Consensus 40 ~df~t~t~~~~~~~~~~~D~~~lNG~~~~~~~~k~~~~ld~~R~~~~~----------------~~~~~i~s~n~~ptaa 103 (329)
T COG3407 40 EDFSTTTTAEELTENDEEDTFILNGELSEDENEKARRVLDRFRKEYGI----------------SFKVKIVSYNNFPTAA 103 (329)
T ss_pred ccccceeEEEEecCCCCccEEEECCccCchHHHHHHHHHHHHHHhhcc----------------cceEEEEEecCCCccc
Confidence 377788887 455568999999998776689999999999998875 5899999999999999
Q ss_pred cCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEE
Q 017031 83 GLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIII 162 (378)
Q Consensus 83 GLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vi 162 (378)
|||||||++||+++|+++++++++|..+|+++||.||||+|||+||||++|.+|. |.++..+++.+...|+++..++
T Consensus 104 GLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gSGSa~RS~~Gg~~~W~~~~---g~~~~~~~~~~~~~~~e~~~i~ 180 (329)
T COG3407 104 GLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGSGSASRSIFGGFVLWEKGE---GEDSAAEQLFRLDLWKELAMIV 180 (329)
T ss_pred cccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhccchhhhhcCCeeEeccCC---CCccceeeeccccCccccceEE
Confidence 9999999999999999999999999999999999999999999999999999886 6788899999888999999999
Q ss_pred EEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCc
Q 017031 163 AVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMND 242 (378)
Q Consensus 163 lvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~ 242 (378)
+++.+..|+++|+++|+.++.||++|++|+.+. ...+.+|..+++++||+.|++++|+|++.||++++++.||++|+++
T Consensus 181 ~~~~~~~k~vsS~~gm~~~~~tS~~y~~w~~~~-~~~~~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~ 259 (329)
T COG3407 181 LVISPKKKKVSSREGMQLTAETSPFYDAWLEHS-EEDLEEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTD 259 (329)
T ss_pred EEEccccCCCCchHHHHHHHHcChHHHHHHHHH-HHhHHHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECc
Confidence 999999999999999999999999999999974 6677999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCCCCCCC
Q 017031 243 TSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETD 301 (378)
Q Consensus 243 ~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~~~~~~ 301 (378)
++.++|+.|+++++. |.. ++||+||||||+++|++++..+ +++.+.+.+.....|+
T Consensus 260 ~s~~ii~~v~~~r~~-g~~-~~fT~DaGPnV~v~~~~~~l~~-~~~~~~~~~~~~~~~~ 315 (329)
T COG3407 260 ESLRIIEFVHELRKE-GNA-VYFTMDAGPNVKVITLEENLID-LLEILKTLECIDGSID 315 (329)
T ss_pred cHHHHHHHHHHHHhc-CCc-eEEEEcCCCceEEEEecccHHH-HHHHHhhcccccceee
Confidence 999999999999765 554 9999999999999999999988 9999998887754443
No 5
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.96 E-value=3.1e-28 Score=234.44 Aligned_cols=247 Identities=18% Similarity=0.146 Sum_probs=185.4
Q ss_pred ccCCCCeeEEEEecCCCCCeEEECCe---ecccC-cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCC
Q 017031 3 ASASPLIPITSVLPQPLPSVLALTKI---EISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 78 (378)
Q Consensus 3 ~~~~~~~~~t~v~~~~~~D~i~lnG~---~~~~~-~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nni 78 (378)
+.|..++-++.|....+.-++...|. ..+.+ .+-+.+++..+-+..+. +.+++|+++|+|
T Consensus 23 GlAl~~~~~~~v~~~~~~~~i~~~g~~~~~iP~~~~n~~~~~~~~~~~~~~~----------------~~~~~i~i~k~I 86 (299)
T COG0083 23 GLALDLYNDVVVVEVVDKFEIEVEGEGADKIPLDPENLVYQAALKFLEALGI----------------EAGVKIRIEKGI 86 (299)
T ss_pred eeeccccCcEEEEEecCcEEEEEecccccCCCCCcceeHHHHHHHHHHHhCC----------------CccEEEEEEcCC
Confidence 44555666666665533334555663 33343 34677777777665554 234999999999
Q ss_pred CCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCc---chhccccCeEEEecccCCCCCCceEEEccCCCCC
Q 017031 79 PTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGS---ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW 155 (378)
Q Consensus 79 P~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGs---a~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~w 155 (378)
|.++|||||||.++|.+.|+|++++++|+.+++.++|..++|+ +++|++||++++.... +-...+++ |
T Consensus 87 P~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~EgHpDNVapa~lGG~~l~~~~~-----~~~~~~v~----~ 157 (299)
T COG0083 87 PLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEGHPDNVAPAVLGGLVLVEEES-----GIISVKVP----F 157 (299)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCchHHHHhhCCEEEEeecC-----CceEEEcc----C
Confidence 9999999999999999999999999999999999999999995 6999999998876421 23355664 6
Q ss_pred C-CceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCC
Q 017031 156 N-DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTS 234 (378)
Q Consensus 156 p-~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~ 234 (378)
| +++++ +++|+. + .+|+.+|++++++..+++.+.+ ..+...|+.|+.++| ..+++.+|+| .+|+
T Consensus 158 ~~~~~~v-~~iP~~--e-~sT~~aR~vLP~~~~~~daV~n--~s~~a~lv~al~~~~-~~l~~~~~~D--~ihe------ 222 (299)
T COG0083 158 PSDLKLV-VVIPNF--E-VSTAEARKVLPKSYSRKDAVFN--LSRAALLVAALLEGD-PELLRAMMKD--VIHE------ 222 (299)
T ss_pred CcceEEE-EEeCCc--c-ccHHHHHHhccccCCHHHHHHH--HHHHHHHHHHHHcCC-HHHHHHHhcc--ccch------
Confidence 5 56665 555643 3 4667789999999989998887 789999999999999 5666667786 5998
Q ss_pred CCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCC
Q 017031 235 PPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 295 (378)
Q Consensus 235 P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~ 295 (378)
||+..+.|...++.+...+ .|++ +++.||||||+|+++++. .++++...+++.+.
T Consensus 223 pyR~~L~P~~~~v~~~a~~----~gA~-g~~lSGAGPTi~al~~~~-~~e~~~~~~~~~~~ 277 (299)
T COG0083 223 PYRAKLVPGYAEVREAALE----AGAL-GATLSGAGPTVFALADES-DAEKAAALLEELYE 277 (299)
T ss_pred hhhhhhCccHHHHHHHHhh----CCce-EEEEecCCCeEEEEeccc-hhhHHHHHHHHHHH
Confidence 5667788888888755554 6998 888899999999999987 33325555554443
No 6
>PRK01212 homoserine kinase; Provisional
Probab=99.95 E-value=6.3e-26 Score=220.72 Aligned_cols=248 Identities=17% Similarity=0.157 Sum_probs=177.2
Q ss_pred cccCCCCeeEEEEecCCC---CCeEEECCee---ccc--CcchHHHHHHHHHHhcccccccccccccccccccccceEEE
Q 017031 2 IASASPLIPITSVLPQPL---PSVLALTKIE---ISL--GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIA 73 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~~~~---~D~i~lnG~~---~~~--~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~ 73 (378)
++.+.+++-+-+|++... ..++.+.|.. .+. +.+.+.++++.+++.++. ..+++|+
T Consensus 22 lG~al~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~Nli~~a~~~~~~~~~~----------------~~~~~I~ 85 (301)
T PRK01212 22 LGLALSLYDEVLVGDVVSVEAEFSIEVIGEGADKLPLDPEKNLVYQAALKFLEKLGK----------------PPGLRIE 85 (301)
T ss_pred hhccccCccEEEEEEccCCCCceEEEEEecCCCcCCCCCccccHHHHHHHHHHHcCC----------------CCCeEEE
Confidence 344557777777765422 1125554431 222 257899999999887764 3579999
Q ss_pred EecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---cchhccccCeEEEecccCCCCCCceEEEcc
Q 017031 74 SFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---SACRSLFGGFVKWILGKEGNGSDSLAVQLV 150 (378)
Q Consensus 74 s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsG---sa~rsl~GG~v~~~~g~~~dg~ds~~~~i~ 150 (378)
++|+||.++|||||||.+||++.|++++++++++.+||.++|+++++ ++++|+|||++++..+. ....++++
T Consensus 86 i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~~~ddv~~~l~GG~~~~~~g~-----g~~~~~~~ 160 (301)
T PRK01212 86 LEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEGHPDNVAPALLGGLVLALEEN-----GVISVKIP 160 (301)
T ss_pred EEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHhCCEEEEEECC-----ceEEEEec
Confidence 99999999999999999999999999999999999999999999988 68899999999764332 12355664
Q ss_pred CCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhc
Q 017031 151 DEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVC 230 (378)
Q Consensus 151 ~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~ 230 (378)
.+ |+++++ ++.|+ ..++|.+..+ .++....++..+.+ ..++..++.++.++|++.|++.+ . |.+|+..
T Consensus 161 ~~---~~~~~v-lv~p~--~~~sT~~a~~-~l~~~~~~~~~~~~--~~~~~~l~~al~~~d~~~~~~~~-~--~~~~~~~ 228 (301)
T PRK01212 161 VF---DDLKWV-VAIPN--IELSTAEARA-VLPKQYSLKDAVFN--SSRAALLVAALYTGDYELAGRAM-K--DVLHEPY 228 (301)
T ss_pred CC---CCeEEE-EEECC--CcCCHHHHHH-hCcCcCCHHHHHHH--HHHHHHHHHHHhhCCHHHHHHHh-c--hhheHHh
Confidence 32 344444 44554 3566655544 34433223444443 45778899999999999999976 3 5688754
Q ss_pred ccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhC
Q 017031 231 LDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFF 294 (378)
Q Consensus 231 ~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f 294 (378)
+ ..+.|...++++.+.+ .|+. ++.+|||||++|+++++++. +++.+.+++.|
T Consensus 229 ~------~~~~p~~~~i~~~~~~----~Ga~-g~~~SGsGptv~~l~~~~~~-~~~~~~l~~~~ 280 (301)
T PRK01212 229 R------AKLIPGFAEVRQAALE----AGAL-GAGISGAGPTVFALCDKEDA-EKVADALQKAF 280 (301)
T ss_pred H------HhhCCCHHHHHHHHHH----CCCe-EEEEEchhhheeEEeccccH-HHHHHHHHHhh
Confidence 2 2344566667666654 5886 78899999999999987766 44888888876
No 7
>PTZ00299 homoserine kinase; Provisional
Probab=99.94 E-value=2.4e-25 Score=219.56 Aligned_cols=254 Identities=15% Similarity=0.142 Sum_probs=183.7
Q ss_pred cccCCCCeeEEEEecCCCCCeEEECCee---cccC-cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecC
Q 017031 2 IASASPLIPITSVLPQPLPSVLALTKIE---ISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNN 77 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~~~~~D~i~lnG~~---~~~~-~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nn 77 (378)
++.+..++.+.+|.+.. ..++.++|.. .+.+ .+.+.+++..+.+.++.. ...+++|+++|+
T Consensus 26 LGlAL~lyd~v~v~~~~-~~~i~i~G~~~~~lp~~~~nlv~~a~~~~~~~~~~~--------------~~~g~~i~i~k~ 90 (336)
T PTZ00299 26 LGMALSIFMELTVEHAD-AFSMTVEGEGSEHISTDEDNMVVQACRLAFEEYAHK--------------SMPPLKFIMHSN 90 (336)
T ss_pred HhhhcccCcEEEEEECC-CCEEEEecCCcCCCCCCcchHHHHHHHHHHHHhcCC--------------CCCceEEEEecC
Confidence 34556788888887642 2356777753 2222 567777777776655420 014799999999
Q ss_pred CCCcccCccchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHhccC---cchhccccCeEEEec-ccCCCCCCceEEEcc
Q 017031 78 FPTAAGLASSAAGFACLVFSLAKLMNLKEN---QSQLSAIARQGSG---SACRSLFGGFVKWIL-GKEGNGSDSLAVQLV 150 (378)
Q Consensus 78 iP~aaGLgSSAA~aAAlv~Al~~l~~l~ls---~~eLs~lAr~gsG---sa~rsl~GG~v~~~~-g~~~dg~ds~~~~i~ 150 (378)
||.++|||||||+++|++.|+|++++++++ .+||.++|.+++| ++++|+|||+++... +.+ +....+++
T Consensus 91 IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EGHpDNVapal~GG~~~~~~~~~g----e~~~~~i~ 166 (336)
T PTZ00299 91 IPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEGHPDNAAPAIYGGIQLVYKKDNG----RFLTYRVP 166 (336)
T ss_pred CCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcCCcccHHHHHhCCEEEEEecCCC----ceEEEecC
Confidence 999999999999999999999999999995 7899999998877 379999999986432 211 12234554
Q ss_pred CCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhc
Q 017031 151 DEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVC 230 (378)
Q Consensus 151 ~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~ 230 (378)
.+ ++++++ +++|+..-++ +|+.+|..+++..-+++.+.+ ..+...++.++.++|++.+.. + . ++||+
T Consensus 167 ~~---~~~~~v-v~iP~~~~~~-sT~~aR~vLP~~v~~~dav~n--~~~~~~lv~al~~~d~~ll~~-~-~--D~lhe-- 233 (336)
T PTZ00299 167 TP---PNLSVV-LFVPHNKMKA-NTHVTRNLIPTSVSLEDAVFN--ISRTSILVLALSTGDLRMLKS-C-S--DKLHE-- 233 (336)
T ss_pred CC---CCeEEE-EEECCCCccc-cHHHHHhhCcccCcHHHHHHh--hhHHHHHHHHHHhCCHHHHHh-c-h--hcccC--
Confidence 32 355555 4456542123 457888888877666666665 567778999999999999954 3 4 46997
Q ss_pred ccCCCCcc-ccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecC-----------cchHHHHHHHHHhhCCC
Q 017031 231 LDTSPPIF-YMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARN-----------RKIATELLQRLLFFFPP 296 (378)
Q Consensus 231 ~~~~P~~~-yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~-----------~~~~~~v~~~l~~~f~~ 296 (378)
||+. .+.|...++++.+.+ .|+. ++++||||||+|+++.+ ++..+++.+.|++.|..
T Consensus 234 ----p~R~~~liP~~~~v~~~~~~----~Ga~-g~~lSGSGPTv~al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 302 (336)
T PTZ00299 234 ----QQRSDALFPHFRPCVKAARE----AGAH-YAFLSGAGPSVCALVGGRHGDPLTQPREERKAESVAEAMIKAAEA 302 (336)
T ss_pred ----cccccccCccHHHHHHHHHH----CCCe-EEEEEchhhhheEEeccccccccccccchhHHHHHHHHHHHHHHH
Confidence 6664 788888888887765 6887 88899999999999983 33344488888887743
No 8
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.93 E-value=3.3e-24 Score=209.08 Aligned_cols=249 Identities=14% Similarity=0.124 Sum_probs=167.3
Q ss_pred cccCCCCeeEEEEec----CCCCCeEEECCee---ccc--CcchHHHHHHHHHHhcccccccccccccccccccc-cceE
Q 017031 2 IASASPLIPITSVLP----QPLPSVLALTKIE---ISL--GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQK-LHLH 71 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~----~~~~D~i~lnG~~---~~~--~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~-~~v~ 71 (378)
++.|..++-+.++.. ..+.+++.+.|.. .+. +.+.+.++++.+++.++. . .+++
T Consensus 19 lg~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~Nlv~~a~~~~~~~~g~----------------~~~g~~ 82 (302)
T TIGR00191 19 LGAALSLYLGLTVTDVVAQESDDTEIEAEGEGVEKIPTEPTDNLIYQVAKRFLDQLGI----------------RMPPVK 82 (302)
T ss_pred hhhhccccceEEEEeeecccCCCceEEEEecccccCCCCcccccHHHHHHHHHHHcCC----------------CCCCEE
Confidence 345666765555553 2111245554432 222 256788899988887764 2 4799
Q ss_pred EEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---cchhccccCeEEEecccCCCCCCceEEE
Q 017031 72 IASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---SACRSLFGGFVKWILGKEGNGSDSLAVQ 148 (378)
Q Consensus 72 I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsG---sa~rsl~GG~v~~~~g~~~dg~ds~~~~ 148 (378)
|+++++||.++|||||||.++|++.|++++++++++.+||.++|.++++ ++++|+|||++++.... + .-...+
T Consensus 83 i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~h~Dnv~~~l~GG~~~~~~~~---~-~~~~~~ 158 (302)
T TIGR00191 83 VTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEGHPDNVAPALLGGFQLAFVED---D-KLEVLK 158 (302)
T ss_pred EEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcCCcccHHHHhccCEEEEEEcC---C-ceEEEE
Confidence 9999999999999999999999999999999999999999999999886 37899999999864321 1 111222
Q ss_pred ccCCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhh
Q 017031 149 LVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHA 228 (378)
Q Consensus 149 i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha 228 (378)
++. .++++++ +++|+ ..++|.+ +++.++...-..+.+.+ ..++..+..++.+++++ +++.+++ +++|+
T Consensus 159 ~~~---~~~~~~v-l~~p~--~~~sT~~-a~~~lp~~~~~~~~v~~--~~~~~~l~~al~~~~~~-l~~~~~~--d~l~e 226 (302)
T TIGR00191 159 IPI---FSKLDWV-LAIPN--IEVSTAE-ARAVLPKAYPRQDLVFN--LSHLAGLVHAIYQKKPD-LGAIMMK--DRIHQ 226 (302)
T ss_pred eCC---CCCEEEE-EEECC--CcccHHH-HHHhCcccCCHHHHHHH--HHHHHHHHHHHHcCCHH-HHHHHcc--cccch
Confidence 221 1345555 44564 3555544 44444443223333433 45667788999999875 5666655 46887
Q ss_pred hcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhh
Q 017031 229 VCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFF 293 (378)
Q Consensus 229 ~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~ 293 (378)
.++ .-+.|...++++.+.+ .|++ ++.+|||||++++++++++.++.+.+.+...
T Consensus 227 ~~~------~~l~p~l~~i~~~~~~----~Ga~-g~~lSGsGptv~al~~~~~~~~~~~~~~~~~ 280 (302)
T TIGR00191 227 PYR------ESLIPNLFKIKQAALE----KGAY-GITISGSGPTILAMADEEFAEQKEQDLLEVL 280 (302)
T ss_pred hhH------hhhCCCHHHHHHHHHH----CCCe-EEEEEchhhhheEEecchhhHHHHHHHHHHH
Confidence 543 4456667777776654 5887 7888999999999998776655344555443
No 9
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.93 E-value=1.5e-24 Score=208.90 Aligned_cols=226 Identities=14% Similarity=0.122 Sum_probs=160.2
Q ss_pred ccCCCCeeEEEEecCCCCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcc
Q 017031 3 ASASPLIPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 82 (378)
Q Consensus 3 ~~~~~~~~~t~v~~~~~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aa 82 (378)
..+.+++-+.++.+.. ..++..++.....+.+.+.++++.+++..+. ..+++|+++|+||+++
T Consensus 31 ~~ai~l~d~v~i~~~~-~~~i~~~~~~~~~~~n~v~~a~~~~~~~~g~----------------~~~~~i~i~k~IP~~~ 93 (275)
T PRK14611 31 YHTIDLYDRIYIKEHH-TLEVKTSSPQIKEEENIVYKALRLFERYTGI----------------DINYSIFIEKNIPVGA 93 (275)
T ss_pred eEeccCCcEEEEEECC-cEEEEeCCCCCCCcccHHHHHHHHHHHHhCC----------------CCCeEEEEEeCCCCcC
Confidence 3455778888887642 2345555543323478899999999887664 3579999999999999
Q ss_pred cCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEE
Q 017031 83 GLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIII 162 (378)
Q Consensus 83 GLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vi 162 (378)
|||||||++||++.|++++++++++.++|.++|+++++|+++|++||++.+. +.+ ...+++... +++.+ +
T Consensus 94 GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~D~~~~~~Gg~~~~~-~~g-----~~~~~~~~~---~~~~~-v 163 (275)
T PRK14611 94 GLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISADAPFFLKGGFALGR-GIG-----DKLEFLEKP---ISREI-T 163 (275)
T ss_pred CccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCeeecCCeEEEe-ccC-----ceeEECCcC---CCcEE-E
Confidence 9999999999999999999999999999999999999999999999998754 321 123344211 12334 4
Q ss_pred EEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCc
Q 017031 163 AVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMND 242 (378)
Q Consensus 163 lvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~ 242 (378)
++.|.. .++|.+. .+.++. .+.. ...++..++.++.++|++.+...+. |.||++++..+|
T Consensus 164 v~~p~~--~~sT~~~-~~~l~~-----~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~---n~l~~~~~~~~P------- 223 (275)
T PRK14611 164 LVYPNI--KSSTGRV-YSKVTK-----QILT--NKEDLNIIISLLREGEEKKIEEVIE---NTLGEIALELYP------- 223 (275)
T ss_pred EEeCCC--CCChHHH-HHhcch-----hhcc--CcchHHHHHHHHHcCCHHHHHHhcC---CcccHHHHHHCH-------
Confidence 445543 4555443 332221 1122 2567788999999999998887653 679998875555
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcc
Q 017031 243 TSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRK 281 (378)
Q Consensus 243 ~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~ 281 (378)
...++.+.++. .| . ++.+|||||++|+++.++.
T Consensus 224 ~l~~~~~~l~~----~~-~-~~~~SGSG~tvf~l~~~~~ 256 (275)
T PRK14611 224 EIKEVYRFLEY----LG-Y-KPFVSGSGSSVYVFGKPSE 256 (275)
T ss_pred HHHHHHHHHHh----CC-C-CEEEeCccccceeEeCCHH
Confidence 55556555433 34 3 5668999999999996543
No 10
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.93 E-value=5e-24 Score=206.03 Aligned_cols=241 Identities=17% Similarity=0.156 Sum_probs=166.9
Q ss_pred cccCCCCeeEEEEecCCCCCeEEE--CCeeccc-CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCC
Q 017031 2 IASASPLIPITSVLPQPLPSVLAL--TKIEISL-GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 78 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~~~~~D~i~l--nG~~~~~-~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nni 78 (378)
|+.+.+++.+.+|.+.. .+.+.+ +...... +.+.+.++++.+++.++. ..+++|+++++|
T Consensus 31 i~~ai~l~~~v~v~~~~-~~~~~i~~~~~~~~~~~~n~~~~~~~~~~~~~~~----------------~~~~~i~i~~~i 93 (286)
T PRK00128 31 IMQTIDLADRLEIEKLK-EDGIVVESNNRYVPNDERNLAYKAAKLLKERYNI----------------KQGVSITIDKNI 93 (286)
T ss_pred eeEecCCCcEEEEEECC-CCCEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC----------------CCCeEEEEEcCC
Confidence 45667888888887754 233333 2211222 256788888888887653 347999999999
Q ss_pred CCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCc
Q 017031 79 PTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDL 158 (378)
Q Consensus 79 P~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l 158 (378)
|.++|||||||.++|++.|++++++++++.+||.++|.+.+.++++|++||++... +.+ . ...++.. .|++
T Consensus 94 P~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g~dv~~~~~Gg~~~~~-~~g---~--~~~~~~~---~~~~ 164 (286)
T PRK00128 94 PVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIGSDVPFCIYGGTALAT-GRG---E--KITPLKS---PPSC 164 (286)
T ss_pred CccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCCCCCeEeeCCeEEEe-cCC---c--ccccCCC---CCCc
Confidence 99999999999999999999999999999999999999988899999999998643 321 1 1233321 2455
Q ss_pred eEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCcc
Q 017031 159 VIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIF 238 (378)
Q Consensus 159 ~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~ 238 (378)
+++ ++.|. ..++|.+..+ .++.. +. ....+..++.++.++|++.+++++ . |.|+......+
T Consensus 165 ~~v-v~~p~--~~~~T~~~~~-~~~~~-----~~---~~~~~~~~~~~l~~~d~~~~~~~~-~--n~l~~~~~~~~---- 225 (286)
T PRK00128 165 WVV-LAKPD--IGVSTKDVYK-NLDLD-----KI---SHPDTEKLIEAIEEGDYQGICANM-G--NVLENVTLKKY---- 225 (286)
T ss_pred EEE-EEcCC--CCCCHHHHHh-cCccc-----cc---cCcchHHHHHHHhcCCHHHHHHhc-c--CcHHHHHHhhC----
Confidence 544 44454 3555543332 22111 11 133567889999999999999875 3 45665554433
Q ss_pred ccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCC
Q 017031 239 YMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 295 (378)
Q Consensus 239 yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~ 295 (378)
|...++++.+.+ .|+. ++.+|||||++|+++.+++..+++.+.+++.++
T Consensus 226 ---p~l~~l~~~~~~----~Ga~-g~~lSGsG~sv~~l~~~~~~~~~i~~~l~~~~~ 274 (286)
T PRK00128 226 ---PEIAKIKERMLK----FGAD-GALMSGSGPTVFGLFDDESRAQRIYNGLKGFCK 274 (286)
T ss_pred ---hHHHHHHHHHHh----cCCC-eeEEcccCccEEEEeCCHHHHHHHHHHhHhhcC
Confidence 455556555543 6887 788899999999999876544448888876543
No 11
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.92 E-value=9e-24 Score=205.77 Aligned_cols=241 Identities=15% Similarity=0.156 Sum_probs=167.8
Q ss_pred ccCCCCeeEEEEecCCCCCeEEECCee---ccc-CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCC
Q 017031 3 ASASPLIPITSVLPQPLPSVLALTKIE---ISL-GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 78 (378)
Q Consensus 3 ~~~~~~~~~t~v~~~~~~D~i~lnG~~---~~~-~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nni 78 (378)
..+.+++-+-+|.+.. ..++.++|.. .+. +.+.+.++++.+++.++. ..+++|+++++|
T Consensus 30 ~~ai~l~d~v~i~~~~-~~~i~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~----------------~~~~~I~i~s~I 92 (300)
T PRK03188 30 FQAVSLYDEVTVTAAD-VLSVEVSGEGADQVPTDESNLAWRAAELLAEHVGR----------------APDVHLHIDKGI 92 (300)
T ss_pred heehhhccEEEEEECC-CcEEEEecCCccCCCCCCccHHHHHHHHHHHHhCC----------------CCCeEEEEEcCC
Confidence 3455777778887642 3456676542 222 367788899988887764 347999999999
Q ss_pred CCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCc
Q 017031 79 PTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDL 158 (378)
Q Consensus 79 P~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l 158 (378)
|+++|||||||+++|+++|++++++++++.++|.++|.+++.+++.|++||+++.. +.+ . ...++... +++
T Consensus 93 P~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig~dv~~~~~GG~~~~~-~~g---~--~~~~~~~~---~~~ 163 (300)
T PRK03188 93 PVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELGSDVPFALLGGTALGT-GRG---E--QLAPVLAR---GTF 163 (300)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchhhcCCeEEEE-ecC---C--EEEECCCC---CCc
Confidence 99999999999999999999999999999999999999998899999999998643 321 1 22333211 344
Q ss_pred eEEEEEECCCCCccCchhhhhhhhccchhHH-HHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCc
Q 017031 159 VIIIAVVSSRQKETSSTTGMRESVETSLLLQ-HRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPI 237 (378)
Q Consensus 159 ~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~-~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~ 237 (378)
.++ +++|+. +++|++..+. ++. +.. ..+. ...+...++.++.++|++.|++.+. |.++. +.
T Consensus 164 ~~~-lv~p~~--~~sT~~~~~~-l~~--~~~~~~~~--~~~~~~~~~~al~~~d~~~l~~~~~---n~le~-------~~ 225 (300)
T PRK03188 164 HWV-LAFADG--GLSTPAVFRE-LDR--LREAGDPP--RLGEPDPLLAALRAGDPAQLAPLLG---NDLQA-------AA 225 (300)
T ss_pred EEE-EEeCCC--CCCHHHHHHh-chh--hhcccccc--ccccHHHHHHHHHcCCHHHHHHHhh---CcCHH-------HH
Confidence 443 334543 5666555443 221 111 0111 2446788999999999999999763 23433 33
Q ss_pred cccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHh
Q 017031 238 FYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLF 292 (378)
Q Consensus 238 ~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~ 292 (378)
..+.|...++++.+.+ .|+. ++.+|||||++|+++++++..+++.+.+++
T Consensus 226 ~~~~p~l~~l~~~~~~----~Gal-ga~lSGsG~tv~~l~~~~~~~~~~~~~l~~ 275 (300)
T PRK03188 226 LSLRPSLRRTLRAGEE----AGAL-AGIVSGSGPTCAFLCADADSAVDVAAALSG 275 (300)
T ss_pred HHhCchHHHHHHHHHH----CCCC-EEEEEccccceEEEeCCHHHHHHHHHHHHh
Confidence 3455666667666654 6887 778899999999999875544447777665
No 12
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.92 E-value=2.2e-23 Score=204.26 Aligned_cols=250 Identities=18% Similarity=0.169 Sum_probs=162.5
Q ss_pred CCCeeEEEEecCCCCCeEEE--CCeecccC-cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcc
Q 017031 6 SPLIPITSVLPQPLPSVLAL--TKIEISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 82 (378)
Q Consensus 6 ~~~~~~t~v~~~~~~D~i~l--nG~~~~~~-~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aa 82 (378)
.+++.+-+|.+.. ++.+.+ +....+.+ .+.+.++++.+++.++.. ..+++|+++|+||.++
T Consensus 36 i~l~d~v~v~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~---------------~~~~~i~i~~~IP~~~ 99 (312)
T PRK02534 36 IDLADRLELRNNG-DGTIRLHCDHPQLSTDDDNLIYRAAQLLRKRFPFA---------------EGGVDITLEKRIPIGA 99 (312)
T ss_pred CCCCCEEEEEECC-CCcEEEEECCCCCCCCchhHHHHHHHHHHHHhCCC---------------CCCeEEEEecCCCCcC
Confidence 4677777776643 344443 22122222 567888888888876530 1479999999999999
Q ss_pred cCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEE
Q 017031 83 GLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIII 162 (378)
Q Consensus 83 GLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vi 162 (378)
|||||||.++|++.|++++|+++++.++|.++|.+.++++++|++||++++.. .+ . ...++..+ +++++++
T Consensus 100 GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g~dv~~~~~GG~~~~~~-~g---~--~~~~~~~~---~~~~~vv 170 (312)
T PRK02534 100 GLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELGSDVPFCIAGGTQLCFG-RG---E--ILEPLPDL---DGLGVVL 170 (312)
T ss_pred CccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCcEEeECCeEEEEC-CC---C--EeEECCCC---CCcEEEE
Confidence 99999999999999999999999999999999999888999999999987542 21 1 13555432 2344443
Q ss_pred EEECCCCCccCchhhhh---hhhccchhHHHHHhhh--chHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCc
Q 017031 163 AVVSSRQKETSSTTGMR---ESVETSLLLQHRAKEV--VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPI 237 (378)
Q Consensus 163 lvv~~~~k~vsSt~~m~---~~~~ts~~~~~~i~~~--~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~ 237 (378)
++.|.. .++|.+..+ ..++.....++...+. ...+...++.++.++|++.+++.+ . |.|.+.....
T Consensus 171 ~~~p~~--~~~T~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~d~~~~~~~~-~--n~l~~~~~~~---- 241 (312)
T PRK02534 171 AKYPSL--SVSTPWAYKTYRQQFGDTYLSDEEDFEQRRQALRSGPLLQAISAKDPPPIAQLL-H--NDLEKVVLPE---- 241 (312)
T ss_pred EECCCC--CccHHHHHHHHhhhcccccccCcccccccccccchhHHHHhhhccCHHHHHHhh-h--CchHHHhHhc----
Confidence 323543 465544432 2222111111111110 123456789999999999998754 2 3444544422
Q ss_pred cccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCC
Q 017031 238 FYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 238 ~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~ 296 (378)
..++.+.++.+..+.|+. ++.+||||||+|+++++++.++++.+.+++.++.
T Consensus 242 ------~~~i~~~~~~l~~~~Ga~-~~~lSGsGptv~~l~~~~~~a~~~~~~l~~~~~~ 293 (312)
T PRK02534 242 ------YPQVAKLLELLSSLPGCL-GTMMSGSGPTCFALFESQEQAEQALEQVREAFAD 293 (312)
T ss_pred ------ChHHHHHHHHHHhccCCC-eeEEECcCcceEEEeCCHHHHHHHHHHHHHHhcc
Confidence 223333333332136887 7889999999999998765555588888776653
No 13
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.92 E-value=6.6e-23 Score=201.90 Aligned_cols=246 Identities=14% Similarity=0.173 Sum_probs=157.4
Q ss_pred CCCCeeEEEEecCCCCCeEEECCee---cc--cCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCC
Q 017031 5 ASPLIPITSVLPQPLPSVLALTKIE---IS--LGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFP 79 (378)
Q Consensus 5 ~~~~~~~t~v~~~~~~D~i~lnG~~---~~--~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP 79 (378)
+.+.+++.+|.+.. +.++.++... .. ...+++.++++.+.+.++. .+++|+++|+||
T Consensus 31 l~~~~~~v~v~~~~-~~~v~~~~~~g~~l~~~~~~n~~~~~~~~~~~~~g~-----------------~~~~i~i~~~IP 92 (324)
T TIGR00144 31 LEEPEIVIGLKESD-DMGVEFTSHAEGKLGEEYRRSRIMEAARKTLKHIGS-----------------EGFHFTVRSMFP 92 (324)
T ss_pred EeCCcEEEEEEECC-CceEEecccccccccchhHHHHHHHHHHHHHHHhCC-----------------CCEEEEEeecCC
Confidence 34566777777653 3445544321 11 1245677777777665542 379999999999
Q ss_pred CcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---cchhccccCeEEEeccc--C--CC---------CCC
Q 017031 80 TAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---SACRSLFGGFVKWILGK--E--GN---------GSD 143 (378)
Q Consensus 80 ~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsG---sa~rsl~GG~v~~~~g~--~--~d---------g~d 143 (378)
.++|||||||.++|++.|+|++++++++.+||.++|.+|.+ ++++|++|||++ ..|. . .+ ...
T Consensus 93 ~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~s~~~va~~~~GG~vv-~~G~~~~~~~~~~~~~~~~~~~~ 171 (324)
T TIGR00144 93 AHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGTSGIGVASFEDGGFIV-DGGHSSKEKSDFLPSSASSAKPA 171 (324)
T ss_pred CccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCCCccceeeeeeCCEEE-ECCcccccccccCcccccCCCCC
Confidence 99999999999999999999999999999999999999988 467899999986 4332 0 00 012
Q ss_pred ceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhh--hccc--hhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHH
Q 017031 144 SLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES--VETS--LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLT 219 (378)
Q Consensus 144 s~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~--~~ts--~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~ 219 (378)
.+..+++ .|+++++ +++|+.. .+++ +|.. +++. ..+++ +.++....+.+|+.++.++|++.|++.+
T Consensus 172 ~~~~r~~----~p~~~~v-lviP~~~-~t~~---are~~~lp~~~~i~~~d-v~~~~~~~l~~l~~al~~~d~~~~~~~l 241 (324)
T TIGR00144 172 PVIARYD----FPDWNII-LAIPEID-SVSG---RREVNIFQKYCPVPLRD-VERICHLILMKMMPAVVEGDLDAFGESV 241 (324)
T ss_pred CeEEecC----CCCcEEE-EEecCCC-CCCc---HHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 2244443 2455555 5567654 3333 3332 3332 22334 4544344446679999999999999976
Q ss_pred HhchhhhhhhcccCC--CCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCC
Q 017031 220 CADSNQFHAVCLDTS--PPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 295 (378)
Q Consensus 220 ~~dsn~lha~~~~~~--P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~ 295 (378)
+|.. .+.++.. |++ .+...++++.+. ++. ++.+||||||+|++++++ ..+ +.+.+.+.|.
T Consensus 242 -~d~~---~~~f~~~~~~~r---~~li~~~~~~l~------~a~-g~~iSGsGPTv~al~~~~-~~~-~~~~~~~~~~ 303 (324)
T TIGR00144 242 -NEIQ---GLGFKKIERELQ---DPLIKRIIDSMI------SAP-GAGMSSFGPTVYAVTDEK-PGN-IAGAVADIFG 303 (324)
T ss_pred -HHHH---hhcchhhhcccc---CHHHHHHHHHHH------hcc-CceecCCCCeEEEEecCc-hHH-HHHHHHHHhh
Confidence 4422 2222211 122 222333334332 234 577899999999999864 333 7777777664
No 14
>PLN02451 homoserine kinase
Probab=99.91 E-value=6.5e-23 Score=205.12 Aligned_cols=223 Identities=17% Similarity=0.148 Sum_probs=157.0
Q ss_pred cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHH
Q 017031 34 GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSA 113 (378)
Q Consensus 34 ~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~ 113 (378)
.+.+.++++.+.+..+. ...+++|+++++||.++|||||||.++|++.|+|++++.+++.+||.+
T Consensus 114 ~Nlv~~a~~~~~~~~g~---------------~~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~ 178 (370)
T PLN02451 114 RNCAGIAAIATMKLLGI---------------RSVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVL 178 (370)
T ss_pred cCcHHHHHHHHHHHcCC---------------CCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 46777888888776653 125899999999999999999999999999999999999999999999
Q ss_pred HHHhccCc--------chhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhccc
Q 017031 114 IARQGSGS--------ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETS 185 (378)
Q Consensus 114 lAr~gsGs--------a~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts 185 (378)
+|.+.+++ +++|+|||+++..... .. ...++..+. -+++++ ++++|+. .+ +|..+++.++..
T Consensus 179 la~~~E~~v~g~h~Dnva~a~~GG~v~~~~~~---~~--~~~~~~~p~-~~~~~~-Vlv~P~~--~~-sT~~ar~~lp~~ 248 (370)
T PLN02451 179 AGLESEAKVSGYHADNIAPALMGGFVLIRSYE---PL--HLIPLRFPS-AKDLFF-VLVSPDF--EA-PTKKMRAALPKE 248 (370)
T ss_pred HHHHHhchhcCCCccchhHhhcCCEEEEEecC---CC--eEEEeecCC-CCCeEE-EEEcCCC--Cc-cHHHHHHHHhhh
Confidence 99887763 4567999998653211 11 122322110 023444 4555653 44 455566555433
Q ss_pred hhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEE
Q 017031 186 LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAY 265 (378)
Q Consensus 186 ~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~ 265 (378)
..+.+.+.+ -.++..++.++.++|++.+++.+.+ +++|+. ++.-+.|...++++.+.+ .|+. ++.
T Consensus 249 ~~~~~~v~~--~~~~~~l~~al~~~d~~~l~~~m~n--D~~~e~------~r~~~~P~l~~l~~~~~~----~GA~-ga~ 313 (370)
T PLN02451 249 IPMKHHVWN--CSQAAALVAAILQGDAVLLGEALSS--DKIVEP------TRAPLIPGMEAVKKAALE----AGAY-GCT 313 (370)
T ss_pred cchhhHHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHhHH------HHhhhCccHHHHHHHHHH----CCCe-EEE
Confidence 222222322 3456788999999999999997643 456763 344566777777777754 5887 778
Q ss_pred EeCCCceeEEEecCcchHHHHHHHHHhhCCC
Q 017031 266 TFDAGPNAVLIARNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 266 tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~ 296 (378)
+||||||+|+++++++..+++.+.+++.|..
T Consensus 314 mSGSGptvfal~~~~~~a~~i~~~l~~~~~~ 344 (370)
T PLN02451 314 ISGAGPTAVAVIDDEEKGEEVGERMVEAFRK 344 (370)
T ss_pred EEccchheEEEEcCHHHHHHHHHHHHHHHHH
Confidence 8999999999998765555588898887743
No 15
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.91 E-value=1.4e-22 Score=196.43 Aligned_cols=243 Identities=14% Similarity=0.120 Sum_probs=160.2
Q ss_pred cccCCCCeeEEEEecCCCCCeEEECCeecccC-cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCC
Q 017031 2 IASASPLIPITSVLPQPLPSVLALTKIEISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPT 80 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~~~~~D~i~lnG~~~~~~-~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~ 80 (378)
|....+++.+-+|.+.. +.++..++...+.+ .+.+.++++.+++..+. ..+++|+++|+||.
T Consensus 32 i~~~i~l~d~v~v~~~~-~~~i~~~~~~~p~~~~nl~~~a~~~~~~~~~~----------------~~~~~I~i~k~IP~ 94 (287)
T PRK14616 32 IFAPINWYDTLTFSPSD-TISMSCTNLDLPVDDSNLCIRAAKALQEYAGV----------------SKGVSITLDKRVPF 94 (287)
T ss_pred EEEEcCCCCEEEEEECC-CEEEEeCCCCCCCCccHHHHHHHHHHHHHhCC----------------CCCeEEEEEeCCCC
Confidence 34445667777776532 23343343323222 56677888888776653 35799999999999
Q ss_pred cccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhcc-ccCeEEEecccCCCCCCceEEEccCCCCCCCce
Q 017031 81 AAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSL-FGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLV 159 (378)
Q Consensus 81 aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl-~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~ 159 (378)
++|||||||.+||+++|++++++.+++.+||.++|.+.++|++.++ +||++. ..|.+ . ..+++.. .+.++
T Consensus 95 ~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~Dvp~~l~~gg~~~-~~g~g---~--~~~~~~~---~~~~~ 165 (287)
T PRK14616 95 GAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGADVPYFLEMKGLAY-ATGIG---D--ELEDLQL---TLPFH 165 (287)
T ss_pred cCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceEeccCCcEE-EEEcC---c--eeEECCc---CCCcE
Confidence 9999999999999999999999999999999999999999987776 489874 33331 1 1233321 12244
Q ss_pred EEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHc-CCHHHHHHHHHhchhhhhhhcccCCCCcc
Q 017031 160 IIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQN-HDFSSFAQLTCADSNQFHAVCLDTSPPIF 238 (378)
Q Consensus 160 ~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~-~D~~~~~~l~~~dsn~lha~~~~~~P~~~ 238 (378)
+ +++.|+ ..++|.+. ++.++.... .+ ..++..++.++.. +|++.++. ++ |.++. +++
T Consensus 166 ~-vvv~P~--~~vsT~~a-~~~l~~~~~-----~~--~~~~~~l~~~l~~~~~~~l~~~-~~---nD~e~-------~~~ 223 (287)
T PRK14616 166 I-VTVFPE--EHISTVWA-YKNFYRRFE-----RE--RPDLKTLVRRLCLDGDTSVLPA-FE---NDFES-------AVF 223 (287)
T ss_pred E-EEECCC--CCcCHHHH-HHHhhhhcc-----cC--CchHHHHHHHHhcCCHHHHHHH-hc---CccHH-------HHH
Confidence 3 444464 35655444 333332111 01 2345566776655 56666654 32 33433 344
Q ss_pred ccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCCC
Q 017031 239 YMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPN 297 (378)
Q Consensus 239 yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~~ 297 (378)
.+.|...++.+.+.+ .|+. ++.+|||||++|+++.+++..+++.+.+++.|+.+
T Consensus 224 ~l~p~l~~v~~~~~~----~Gal-g~~lSGSGptv~al~~~~~~a~~i~~~l~~~~~~~ 277 (287)
T PRK14616 224 DHYPAVRKVKDDLLE----AGSF-FASLSGSGSAVFGLFENEADAEAAAEMMRARYRTN 277 (287)
T ss_pred HhChHHHHHHHHHHh----CCCC-eEEEecccccceEEeCCHHHHHHHHHHhHHhCccc
Confidence 556666666665543 6888 77789999999999987655555999999888764
No 16
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.90 E-value=2.9e-22 Score=194.77 Aligned_cols=242 Identities=13% Similarity=0.082 Sum_probs=159.7
Q ss_pred CCCCeeEEEEecCCCCCeEEE--CCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcc
Q 017031 5 ASPLIPITSVLPQPLPSVLAL--TKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 82 (378)
Q Consensus 5 ~~~~~~~t~v~~~~~~D~i~l--nG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aa 82 (378)
+.+++.+-++.+.. ++.+.+ +......+.+.+.++++.+++..+... ....+++|.++++||.++
T Consensus 33 ~i~l~d~v~i~~~~-~~~i~~~~~~~~~~~~~nlv~~a~~~l~~~~~~~~------------~~~~~~~i~i~~~iP~~a 99 (293)
T TIGR00154 33 FLDLGDKIIISVRS-DDDIRLLKGDFDVPLEENLIYRAAQLLKNFANSKI------------KSLDGANIEIDKNIPMGA 99 (293)
T ss_pred EeccCcEEEEEECC-CCcEEEeeCCCCCCCCCcHHHHHHHHHHHHhcccc------------cCCCCeEEEEeccCCCCC
Confidence 34566666665443 233332 222122224788899999888765310 013479999999999999
Q ss_pred cCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEE
Q 017031 83 GLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIII 162 (378)
Q Consensus 83 GLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vi 162 (378)
|||||||.+||++.|++++++++++.++|.++|.+.+++++.|++||++.. .|.++ ...++.. .|+++++
T Consensus 100 GLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg~Dv~~~~~gg~~~~-~g~ge-----~~~~l~~---~~~~~~v- 169 (293)
T TIGR00154 100 GLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLGADVPFFVSGHAAFA-TGVGE-----IITPFED---PPEKWVV- 169 (293)
T ss_pred CcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceEEECCeEEE-EecCc-----EEEECCC---CCCcEEE-
Confidence 999999999999999999999999999999999999889999999999753 33311 2344432 2445443
Q ss_pred EEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCc
Q 017031 163 AVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMND 242 (378)
Q Consensus 163 lvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~ 242 (378)
++.|. ..++|.+..+ .++ + ....+.....++.++..++++.+..... |.|..+.+..+|
T Consensus 170 l~~p~--~~~sT~~~~~-~l~---~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~---ndle~~~~~~~p------- 228 (293)
T TIGR00154 170 IAKPH--VSISTPVVYQ-AYK---L-----PRNTPKRAKEWLKKISLECLQLLDSNGL---NDLEKVALKRHT------- 228 (293)
T ss_pred EEcCC--CCcChHHHHH-hhh---h-----cccCcchhHHHHHHHhhccHHHHhhhhc---CccHHHHHhcCH-------
Confidence 44454 3555544433 221 0 0011334455777887888876655432 557666654444
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCC
Q 017031 243 TSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 295 (378)
Q Consensus 243 ~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~ 295 (378)
...++++.+++ .|+. ++.+|||||++|+++++++..+++.+.+++.++
T Consensus 229 ~l~~i~~~l~~----~Ga~-~a~mSGSG~tvf~l~~~~~~a~~~~~~~~~~~~ 276 (293)
T TIGR00154 229 EVAQALNWLLE----YGLA-PERLSGSGACVFALFDMESEAEQVLEQAPEWLN 276 (293)
T ss_pred HHHHHHHHHHh----CCCC-eEEEeccccceEEEeCCHHHHHHHHHHhHHHhh
Confidence 55555555543 6887 788999999999999877755557777765554
No 17
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.90 E-value=1.4e-22 Score=194.34 Aligned_cols=210 Identities=16% Similarity=0.098 Sum_probs=155.3
Q ss_pred cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHH
Q 017031 34 GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSA 113 (378)
Q Consensus 34 ~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~ 113 (378)
.+.++++.+.+|+.++. ..+++|.++||||+++|||++||.+||++++||++|+++++.+||..
T Consensus 66 ~NLv~rAa~ll~~~~~~----------------~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~ 129 (289)
T COG1947 66 ENLVYRAAELLRKRTGI----------------AGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAE 129 (289)
T ss_pred chHHHHHHHHHHHHhCC----------------CCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 47899999999999884 46899999999999999999999999999999999999999999999
Q ss_pred HHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHh
Q 017031 114 IARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 193 (378)
Q Consensus 114 lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~ 193 (378)
||-+.+.|++.|++||... ..|. .++|.+....|+.+++ ++.|. ..+||.+.++ .....
T Consensus 130 Lg~~LGaDVPffl~g~tA~-a~G~--------GE~l~~~~~~~~~~~v-l~~P~--v~vsT~~vy~-~~~~~-------- 188 (289)
T COG1947 130 LGLRLGADVPFFLSGGTAF-AEGR--------GEKLEPLEDPPEKWYV-LAKPG--VGVSTKEVYK-DPELT-------- 188 (289)
T ss_pred HHHHhCCCcCeeeeCCceE-EEEc--------cceeeECCCCCCceEE-EEeCC--CCCChHHHHc-CcCcc--------
Confidence 9999999999999999865 4454 2344433333444444 44553 4777766655 11110
Q ss_pred hhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCcee
Q 017031 194 EVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNA 273 (378)
Q Consensus 194 ~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v 273 (378)
........+..++...++....+.. .|.|+.+++..|| + ++....+..++|+. .+.||||||||
T Consensus 189 -~~~~~~~~~~~~~~~~~~~~~~~~~---~NdLe~~~~~~~p-------~----v~~~~~~l~~~ga~-~~~mSGSGstv 252 (289)
T COG1947 189 -RNTPKSEPLIAALSLENLKQIAPFL---INDLEKVALRLYP-------E----VKEALSELLEYGAL-PARMSGSGSTV 252 (289)
T ss_pred -cccCCchhhhHHHhhhhHhhhcccc---ccchHHHHHHhCh-------H----HHHHHHHHhhcccc-cceEecCCCcE
Confidence 1233445566667777776666643 3789999999888 2 22222222335765 78899999999
Q ss_pred EEEecCcchHHHHHHHHHhhCCC
Q 017031 274 VLIARNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 274 ~~i~~~~~~~~~v~~~l~~~f~~ 296 (378)
|.++.+++.++++.+.+.+.++.
T Consensus 253 F~l~~~~~~a~~~~~~l~~~~~~ 275 (289)
T COG1947 253 FALFDTEKEAQRVAEQLPKGVCG 275 (289)
T ss_pred EEEeCChHHHHHHHHHhhcccCC
Confidence 99999998888788887765543
No 18
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.89 E-value=5.6e-22 Score=193.13 Aligned_cols=216 Identities=15% Similarity=0.102 Sum_probs=148.0
Q ss_pred cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHH
Q 017031 34 GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSA 113 (378)
Q Consensus 34 ~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~ 113 (378)
.+.+.++++.+++.++. ..+++|+++|+||+++|||||||++|+++.++++++++ ...++|.+
T Consensus 74 ~Nlv~ka~~~~~~~~~~----------------~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l-~~~e~L~~ 136 (297)
T PRK14613 74 QNILYKTFIKARSLFPE----------------LPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF-FTSDEMQV 136 (297)
T ss_pred cchHHHHHHHHHHHhCC----------------CCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC-CcHHHHHH
Confidence 67889999999887764 35899999999999999999999999999999887665 23467888
Q ss_pred HHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHh
Q 017031 114 IARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAK 193 (378)
Q Consensus 114 lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~ 193 (378)
+|.++++|++.+++|| +.|..|.++ ..++++. |..++ ++++|+. .++|.+..+ .+++.........
T Consensus 137 lA~~lGaDvP~~l~G~-~a~~~g~Ge-----~~~~l~~----~~~~~-vlv~P~~--~vsT~~a~~-~l~~~~~~~~~~~ 202 (297)
T PRK14613 137 FAKEIGSDVPFFLGEG-HAFVTGKGE-----IMEEIEV----HKGQG-ILALTPQ--VMNTGEMYA-LLKKPLQESASQK 202 (297)
T ss_pred HHHHhCCccchhhcCC-eEEEecCCc-----EEEEcCC----CCCeE-EEEECCC--CcChHHHHH-hcchhhccccccc
Confidence 9999888876666665 566665421 2445532 33233 4555653 566655544 3332110000001
Q ss_pred hhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCcee
Q 017031 194 EVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNA 273 (378)
Q Consensus 194 ~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v 273 (378)
+...+...++.++.++|++.+...++ |.|+. +++-+.|...++++.+.+ .|+. ++.+||||||+
T Consensus 203 -~~~~~~~~~~~al~~~~~~~l~~~l~---ndle~-------~~~~l~P~~~~i~~~~~~----~Ga~-~~~mSGSGptv 266 (297)
T PRK14613 203 -NGNTLSEDLISSLKVGDWVSLQGRLE---NDFEP-------VAFQLHPELGVLKDKFLE----FGSS-YCSLTGSGSSM 266 (297)
T ss_pred -cccccHHHHHHHHHcCCHHHHHHHhc---ccchH-------HHHHhCcHHHHHHHHHHH----cCCC-EEEEEccccce
Confidence 11224557889999999998876553 34544 444456667777666643 6887 88899999999
Q ss_pred EEEecCcchHHHHHHHHHhhCCC
Q 017031 274 VLIARNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 274 ~~i~~~~~~~~~v~~~l~~~f~~ 296 (378)
|+++.+++.++++.+.+++.|+.
T Consensus 267 f~l~~~~~~a~~~~~~l~~~~~~ 289 (297)
T PRK14613 267 YGLVQGLEIQEELLPRLRQEFSN 289 (297)
T ss_pred EEEeCCHHHHHHHHHHHHHhhcc
Confidence 99998866666588888887654
No 19
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.89 E-value=1.2e-21 Score=190.78 Aligned_cols=244 Identities=14% Similarity=0.063 Sum_probs=157.3
Q ss_pred CeeEEEEecCCC-CCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccCcc
Q 017031 8 LIPITSVLPQPL-PSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLAS 86 (378)
Q Consensus 8 ~~~~t~v~~~~~-~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLgS 86 (378)
++-+-+|.+..+ +.++..++...+...+.+.++++.+++..+. ..+++|+++|+||.++||||
T Consensus 42 ~~D~l~i~~~~~~~i~~~~~~~~~~~~~Nlv~~a~~~~~~~~~~----------------~~~~~i~i~k~IP~~~GLGs 105 (296)
T PRK14615 42 PHDELHVRVTDAPGITVTCTIPDLDPERNTVTRAYTAFAAATGF----------------RPPLEVHLRKGIPHGAGLGG 105 (296)
T ss_pred CCcEEEEEECCCCCEEEEECCCCCCCCccHHHHHHHHHHHHhCC----------------CCCeEEEEEeCCCCCCCccH
Confidence 354555554322 1234445543333367788899999887764 35799999999999999999
Q ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEEC
Q 017031 87 SAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVS 166 (378)
Q Consensus 87 SAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~ 166 (378)
|||.+||++.++|++|+++++.+||.++|.+++++++.+++||.++ ..|.++ ..+++.. ..|+++++ ++.|
T Consensus 106 gsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~gaDvPffl~gg~a~-~~G~Ge-----~~~~l~~--~~~~~~~v-l~~P 176 (296)
T PRK14615 106 GSADAAALLRHLNSIAPHPLSPEALAKLAAGVGADVPFFLHNVPCR-ATGIGE-----ILTPVAL--GLSGWTLV-LVCP 176 (296)
T ss_pred HHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCCeeeccCCCEE-EEeeEe-----EEEECCC--CCCCcEEE-EECC
Confidence 9999999999999999999999999999999988998899999964 455421 2344431 12444444 4445
Q ss_pred CCCCccCchhhhhhhhccchhHHHHHhhh-chHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHH
Q 017031 167 SRQKETSSTTGMRESVETSLLLQHRAKEV-VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSH 245 (378)
Q Consensus 167 ~~~k~vsSt~~m~~~~~ts~~~~~~i~~~-~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~ 245 (378)
. ..++|.+..+. ++.....+ +.... .......++.+...+|.+.++.... -.|.|+. +++.+.|...
T Consensus 177 ~--~~vsT~~a~~~-~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~ndle~-------~~~~l~P~l~ 244 (296)
T PRK14615 177 E--VQVSTPWAYAA-WDAANAKQ-IAASSRKQNRLRGCLTTEGVADRNPLSRGLW-LHNSFEP-------VVFAAHPELR 244 (296)
T ss_pred C--CCcChHHHHHH-hhhhcccc-cccccccccchHHHHHhhhccchhhhhhhhh-ccccchh-------HhHHhChHHH
Confidence 4 36666555432 21110000 00000 0012233445555667665544321 1244553 4445666777
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhh
Q 017031 246 RIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFF 293 (378)
Q Consensus 246 ~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~ 293 (378)
++++.+.+ .|+. ++.+|||||++|+++.+++.++++.+.+++.
T Consensus 245 ~~~~~~~~----~GAl-ga~mSGSGptvfaL~~~~~~a~~i~~~l~~~ 287 (296)
T PRK14615 245 RLKETLLR----HGAA-AALMSGSGSSVFGLFRRRAQAEAAFEMLKGH 287 (296)
T ss_pred HHHHHHHh----cCCC-EEEEeccCcceEEEeCCHHHHHHHHHHHhhh
Confidence 77666654 6887 7889999999999998877666588887763
No 20
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.89 E-value=2e-21 Score=188.66 Aligned_cols=207 Identities=14% Similarity=0.095 Sum_probs=138.1
Q ss_pred cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHH
Q 017031 34 GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSA 113 (378)
Q Consensus 34 ~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~ 113 (378)
.+.+.++++.+++.++.. ..+++|+++|+||+++|||||||.+||++.++|++++++++.+||.+
T Consensus 70 ~Nlv~ka~~~~~~~~g~~---------------~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~ 134 (290)
T PRK14608 70 DNLVLRAARALRARVGPG---------------LPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAA 134 (290)
T ss_pred CcHHHHHHHHHHHHhCCC---------------CCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 678889999998876520 34799999999999999999999999999999999999999999999
Q ss_pred HHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhccch--hHHHH
Q 017031 114 IARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSL--LLQHR 191 (378)
Q Consensus 114 lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~--~~~~~ 191 (378)
+|.+.+++++++++||++. ..|.+ . ..+++.. +|+++++ ++.|. ..++|.+ +++.++... .....
T Consensus 135 la~~ig~dv~~~l~gg~~~-~~g~g---~--~~~~l~~---~~~~~~v-v~~p~--~~~sT~~-~~~~l~~~~~~~~~~~ 201 (290)
T PRK14608 135 LALSLGADVPVCLDSRPLI-MRGIG---E--ELTPLPG---LPSLPAV-LVNPG--VPVATPD-VFRALGLRDGPPLPGA 201 (290)
T ss_pred HHHHhCCCcchhhcCCeEE-EEecC---C--EeEECCC---CCCcEEE-EECCC--CCcChHH-HHHhhccccCCcchhh
Confidence 9999999999999999975 33331 1 1344432 3555554 44454 3566544 443333211 00000
Q ss_pred HhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhc-CCCeEEEEeCCC
Q 017031 192 AKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVAYTFDAG 270 (378)
Q Consensus 192 i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~-G~~~~a~tsgAG 270 (378)
+.+ ..+...+..++. ...|.|..+.+ .+.|...++.+.+.+ . |+. ++.+||||
T Consensus 202 ~~~--~~~~~~l~~~~~------------~~~ndle~~~~-------~l~p~l~~i~~~~~~----~~Ga~-~~~lSGSG 255 (290)
T PRK14608 202 PDP--LASADALLAALA------------ATRNDLEPPAL-------ALAPVIGEVLAALRA----QPGAL-LARMSGSG 255 (290)
T ss_pred hhh--hhhhhhHHHHHH------------hccCccHHHHH-------HcCcHHHHHHHHHHh----cCCCC-eeEEeccc
Confidence 001 012222222221 11244554443 345566666666654 6 887 78899999
Q ss_pred ceeEEEecCcchHHHHHHHHHhhC
Q 017031 271 PNAVLIARNRKIATELLQRLLFFF 294 (378)
Q Consensus 271 P~v~~i~~~~~~~~~v~~~l~~~f 294 (378)
|++|+++.+++..+++.+.+++.+
T Consensus 256 stvf~l~~~~~~a~~~~~~l~~~~ 279 (290)
T PRK14608 256 ATCFALFADEAAAEAAAAAIAAAH 279 (290)
T ss_pred cCeEEEeCCHHHHHHHHHHhHhhC
Confidence 999999987665555888887654
No 21
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.89 E-value=1.7e-21 Score=187.77 Aligned_cols=233 Identities=15% Similarity=0.106 Sum_probs=156.5
Q ss_pred cCCCCeeEEEEecCCCCCeEEECCeecccC-cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcc
Q 017031 4 SASPLIPITSVLPQPLPSVLALTKIEISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 82 (378)
Q Consensus 4 ~~~~~~~~t~v~~~~~~D~i~lnG~~~~~~-~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aa 82 (378)
.+..++-+-+|.+..+..++..++...+.+ .+.+.+++..+++.++. ..+++|+++|+||+++
T Consensus 33 ~al~l~d~v~i~~~~~~~~i~~~~~~~p~~~~Nli~ka~~~~~~~~g~----------------~~~~~I~i~k~IP~~~ 96 (276)
T PRK14612 33 VPLDVGDRLEVEPIASGLELRVLGADLPTDERNLVYRAARAYLDAAGQ----------------PGGVRITLEKRLPLAA 96 (276)
T ss_pred EECCCCCEEEEEECCCcEEEEcCCCCCCCCCcccHHHHHHHHHHHhCC----------------CCCeEEEEEecCCCcC
Confidence 344667777776543222344445423222 56788899988887764 3479999999999999
Q ss_pred cCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEE
Q 017031 83 GLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIII 162 (378)
Q Consensus 83 GLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vi 162 (378)
|||||||.+||++.++|++++++++ +.++|.+.+++++++++||+++. .|.+ . ...++++ |++++ +
T Consensus 97 GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g~dv~~~~~GG~~~~-~g~g---~--~~~~l~~----~~~~~-v 162 (276)
T PRK14612 97 GLGGGSSDAAATLLALAQLYPAPVD---LPALALTLGADVPFFLLGGAAEA-RGVG---E--RLTPLEL----PPVPL-V 162 (276)
T ss_pred CCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhCCCcCeeeeCCeEEE-EecC---c--cceEcCC----CCcEE-E
Confidence 9999999999999999999998764 67777777778999999999864 3321 1 1345532 23343 4
Q ss_pred EEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCc
Q 017031 163 AVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMND 242 (378)
Q Consensus 163 lvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~ 242 (378)
+++|+. .++|. .+++.+.... ... ..+...++.++.++|...+ .|.|+ |+++.+.|
T Consensus 163 v~~P~~--~~sT~-~a~~~l~~~~-----~~~--~~~~~~l~~~l~~~d~~~~-------~n~l~-------~~~~~~~p 218 (276)
T PRK14612 163 LVNPGV--AVSAR-DAYRWLEPED-----FGP--ELDVEAILAALARGEEPPY-------WNSLE-------GPVFARHP 218 (276)
T ss_pred EECCCC--CCCHH-HHHHhhcccc-----CCC--cccHHHHHHHHHhcccccc-------cCCcH-------HHHHHhCh
Confidence 555653 55544 4444331110 111 3457788888988874211 13343 45555677
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCC
Q 017031 243 TSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 295 (378)
Q Consensus 243 ~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~ 295 (378)
...++++.+.+ .|+. ++.+|||||++|+++++++.++++.+.+++.++
T Consensus 219 ~l~~i~~~l~~----~Ga~-~~~lSGsGptvfal~~~~~~a~~~~~~l~~~~~ 266 (276)
T PRK14612 219 ELQEVLAALRA----AGLR-GVLMSGSGSTCFGLAEDAAQAQRAAAALRARHP 266 (276)
T ss_pred HHHHHHHHHHh----CCCC-EEEEcCcchhhEEEeCCHHHHHHHHHHhHhhCC
Confidence 77777777654 5887 788999999999999877655558888877654
No 22
>PTZ00298 mevalonate kinase; Provisional
Probab=99.88 E-value=3.8e-21 Score=189.71 Aligned_cols=259 Identities=12% Similarity=0.099 Sum_probs=162.5
Q ss_pred cccCCCCeeEEEEecCCCCCeEE--ECCeeccc----CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEe
Q 017031 2 IASASPLIPITSVLPQPLPSVLA--LTKIEISL----GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASF 75 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~~~~~D~i~--lnG~~~~~----~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~ 75 (378)
|+.+-+++-+.+|......+.++ .+...... ..+.+.++++.+++..+... ...+++|.++
T Consensus 34 I~~~I~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~a~~~~~~~~~~~~-------------~~~g~~I~I~ 100 (328)
T PTZ00298 34 IVAGIDEYTECRLELTKGVPGLQVVDQRPAVPGYIVEKREEQRKAHQLVLRHLNIDT-------------SVDGLKMHLG 100 (328)
T ss_pred hhhecccceEEEEEEccCCCCceeccccccccchHHHhHHHHHHHHHHHHHHHhccc-------------CCCCeEEEEE
Confidence 55556666555565433223332 22111111 14567778888877765310 0248999999
Q ss_pred cCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc------cC---cchhccccCeEEEecccCCCCCCceE
Q 017031 76 NNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG------SG---SACRSLFGGFVKWILGKEGNGSDSLA 146 (378)
Q Consensus 76 nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~g------sG---sa~rsl~GG~v~~~~g~~~dg~ds~~ 146 (378)
++||.++|||||||.++|++.|++++|+++++.+||.++|.++ .. |...|+|||++....+. +. ...
T Consensus 101 ~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG~D~~~~~~Gg~~~~~~~~---g~-~~~ 176 (328)
T PTZ00298 101 GPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSGADNTAATYGGLISYRRVN---GK-SVF 176 (328)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHcCCeEEEecCC---Cc-cce
Confidence 9999999999999999999999999999999999999998653 22 56679999998654322 11 123
Q ss_pred EEccCCCCCCCceEEEEEECCCCCccCchhhhhhhh---ccch-hHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhc
Q 017031 147 VQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESV---ETSL-LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCAD 222 (378)
Q Consensus 147 ~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~---~ts~-~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~d 222 (378)
.+++.+ ++++++ ++.|.. ..+|.+..+... +..+ .+...... ....+.+++.++.++|++.|++++..+
T Consensus 177 ~~l~~~---~~~~lv-v~~~~~--~~sT~~~~~~v~~~~~~~p~~~~~~~~~-~~~~~~~~~~al~~~d~~~lg~~m~~~ 249 (328)
T PTZ00298 177 KRIAFQ---QPLYLV-VCSTGI--TASTTKVVGDVRKLKENQPTWFNRLLEN-YNACVSEAKEALQKGNLFRVGELMNAN 249 (328)
T ss_pred eEecCC---CCCeEE-EEECCC--chhHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444321 234443 444442 455544433211 1111 11111121 234677889999999999999987544
Q ss_pred hhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCc--eeEEEecCcchHHHHHHHHHhhCCCC
Q 017031 223 SNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFFFPPN 297 (378)
Q Consensus 223 sn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP--~v~~i~~~~~~~~~v~~~l~~~f~~~ 297 (378)
++.+.... ..+|...++++.+++ .|+. ++.+||||| ++|+++++++..+++.+.+++.|+..
T Consensus 250 ~~~l~~~~--------v~~p~l~~l~~~~~~----~Ga~-gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~~~~ 313 (328)
T PTZ00298 250 HDLCQKLT--------VSCRELDSIVQTCRT----YGAL-GAKMSGTGRGGLVVALAASEDQRDAIAKAVRARCPEA 313 (328)
T ss_pred HHHHHHhC--------CCcHHHHHHHHHHHh----CCCc-eeEeccCCCCeEEEEEecchhhHHHHHHHHHHHhhhc
Confidence 44443321 145566666665554 5887 677899999 68888876555555888888877543
No 23
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.88 E-value=4.9e-21 Score=185.37 Aligned_cols=237 Identities=15% Similarity=0.139 Sum_probs=153.0
Q ss_pred CCCeeEEEEecCCCCCeEEECCee-cccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccC
Q 017031 6 SPLIPITSVLPQPLPSVLALTKIE-ISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 84 (378)
Q Consensus 6 ~~~~~~t~v~~~~~~D~i~lnG~~-~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGL 84 (378)
.+++-+-++.+..+...+.+.+.. .+.+.+-+.++++.+++.++. ..+++|+++|+||+++||
T Consensus 36 i~l~D~l~i~~~~~~~~~~~~~~~~~~~~~Nlv~kA~~~l~~~~~~----------------~~g~~i~i~K~IP~~aGL 99 (283)
T PRK14610 36 VNLYDFLEIKIGSKNRGVEFVNSLKINRYNNTVQRAIGLLLRHSPV----------------RTNVYVKVIKNIPVSAGL 99 (283)
T ss_pred cCCCCEEEEEECCCCCeEEEeCCCCCCCCCcHHHHHHHHHHHHhCC----------------CCCeEEEEEcCCCCCCcC
Confidence 355555556553221346665432 222367889999999987764 358999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEE
Q 017031 85 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAV 164 (378)
Q Consensus 85 gSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilv 164 (378)
|||||++||++.++|++|+ ++.+||.++|.+.+.|++.|++||.+ |..|.++ ..+++.+. ++..+ ++++
T Consensus 100 GggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~lGaDvPffl~g~~a-~~~G~Ge-----~l~~l~~~--~~~~~-~vl~ 168 (283)
T PRK14610 100 AGGSADAAAVIRLLGKLWG--IDEQILNELALSVGSDVPACLDSKTL-FVRGIGE-----DILLLPDL--SLPTY-VVLV 168 (283)
T ss_pred CccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhCCCCcEEEECCeE-EEEeccc-----EEEECccc--CCCCe-EEEE
Confidence 9999999999999999996 68999999999999999999999997 6666532 23344211 12223 4455
Q ss_pred ECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchH
Q 017031 165 VSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTS 244 (378)
Q Consensus 165 v~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s 244 (378)
.|.. ..+||.+.++.. .... ... + ...+ .+..+++..+...+ .|.|+.+.+. +.|..
T Consensus 169 ~p~~-~~~sT~~vy~~~-~~~~-----~~~--~--~~~~--~~~~~~~~~~~~~~---~Ndle~~~~~-------l~P~l 225 (283)
T PRK14610 169 APKG-KFLSTRKVFNKY-ECKA-----FSE--P--IDNL--PVAQDDLLELLKEA---RNDLLETAIS-------LVPEI 225 (283)
T ss_pred ECCC-CccChHHHHHhh-cccc-----cCC--c--cccc--ccchhHHHHHHHHh---cCchHHHHHH-------hChHH
Confidence 5532 467887776542 1000 000 0 0000 12233333322222 3556655444 45566
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCC
Q 017031 245 HRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 245 ~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~ 296 (378)
.++++.+++ ..|+. ++++||||||+|+++.+++.++++.+.+++.++.
T Consensus 226 ~~~~~~l~~---~~ga~-~a~mSGSGsTvf~l~~~~~~a~~~~~~l~~~~~~ 273 (283)
T PRK14610 226 EEILFVLES---LEGCI-LSRMSGSGATCFALFEEEEAAEAAARYLKMTRPE 273 (283)
T ss_pred HHHHHHHHh---cCCCc-eEEEeCcccceeEEeCCHHHHHHHHHHhhhhCCc
Confidence 777666543 24666 7889999999999998766555588887765543
No 24
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.87 E-value=1.1e-20 Score=182.46 Aligned_cols=197 Identities=10% Similarity=0.021 Sum_probs=136.6
Q ss_pred CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHH
Q 017031 33 GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLS 112 (378)
Q Consensus 33 ~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs 112 (378)
..+.+.++++.+++..+. +.+++|+++|+||+++|||||||++||++.++|++++++++.+||.
T Consensus 60 ~~Nlv~ra~~~l~~~~g~----------------~~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~ 123 (288)
T PRK00650 60 PSNSIWKSVALFRRYTGI----------------TTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELR 123 (288)
T ss_pred cccHHHHHHHHHHHHhCC----------------CCCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHH
Confidence 368899999999988764 3589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHH
Q 017031 113 AIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRA 192 (378)
Q Consensus 113 ~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i 192 (378)
++|.+.+++++.+++||+++ ..|.++ ..+++. ..+++++ ++++|+. .++|.+..+.. . ..
T Consensus 124 ~lA~~lGaDvPffl~~g~a~-~~G~Ge-----~l~~~~---~~~~~~~-vlv~P~~--~vsT~~ay~~~-~------~~- 183 (288)
T PRK00650 124 SLAEKIGMDTPFFFSTGSAL-GVGRGE-----KIIALE---ESVSDRY-VLYFSSE--GVLTSRAFAYV-Q------PS- 183 (288)
T ss_pred HHHHHhCCcchhhhcCceEE-EEecCC-----EEEECc---CCCCceE-EEEeCCC--CCChHHHHHhh-c------cc-
Confidence 99999999999999999864 444321 234442 1244554 4555653 67665554321 0 00
Q ss_pred hhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCC--eEEEEeCCC
Q 017031 193 KEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP--QVAYTFDAG 270 (378)
Q Consensus 193 ~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~--~~a~tsgAG 270 (378)
. .. +...+ ....|.|+++++..+| ...++.+.+.+ .|+. ..+.|||||
T Consensus 184 ~---~~------------~~~~~----~~~~Ndle~~~~~~~p-------~i~~~~~~l~~----~~~~~~~~~~MSGSG 233 (288)
T PRK00650 184 D---CS------------SRKNL----EYTQNDLEKPVFRLRL-------DLKEKKHWLES----LWAELPVHVGLTGSG 233 (288)
T ss_pred c---cc------------hhhHh----ccCCCchHHHHHHhCh-------HHHHHHHHHHh----ccccCCCeEEEeCcc
Confidence 0 00 00001 1224778888887666 44555555543 2321 136689999
Q ss_pred ceeEEEecCcchHHHHH-HHHHhhCC
Q 017031 271 PNAVLIARNRKIATELL-QRLLFFFP 295 (378)
Q Consensus 271 P~v~~i~~~~~~~~~v~-~~l~~~f~ 295 (378)
|++|+++++++..++++ +.+++.++
T Consensus 234 st~F~l~~~~~~~~~~~~~~~~~~~~ 259 (288)
T PRK00650 234 ATLFVRYPEILEKDPSYAAQIQRAIT 259 (288)
T ss_pred cCEEEEeCCHHHHHHHHHHHhHhhhh
Confidence 99999998866555466 66666655
No 25
>PRK03926 mevalonate kinase; Provisional
Probab=99.87 E-value=3.5e-20 Score=180.35 Aligned_cols=239 Identities=19% Similarity=0.148 Sum_probs=153.8
Q ss_pred ccCCCCeeEEEEecCCCCCeEEECCe--ecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCC
Q 017031 3 ASASPLIPITSVLPQPLPSVLALTKI--EISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPT 80 (378)
Q Consensus 3 ~~~~~~~~~t~v~~~~~~D~i~lnG~--~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~ 80 (378)
+.+-+++++.++.+.. +.+.+... +....+..++++++.+++..+. .+++|+++++||.
T Consensus 26 ~~aI~~~~~v~i~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~g~~i~i~~~iP~ 86 (302)
T PRK03926 26 ACAIDLRTYVRAEFND--DSIYIESDYGKTGEKHPYVSAAIEKMREEADK-----------------DGVTVSITSQIPV 86 (302)
T ss_pred EEEecceEEEEEEECC--CceEEecccccccchhHHHHHHHHHHHHhcCC-----------------CCeEEEEecCCCC
Confidence 4455777777776542 33333221 1111244577888888776542 3789999999999
Q ss_pred cccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc--------cC-cchhccccCeEEEecccCCCCCCceEEEccC
Q 017031 81 AAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--------SG-SACRSLFGGFVKWILGKEGNGSDSLAVQLVD 151 (378)
Q Consensus 81 aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~g--------sG-sa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~ 151 (378)
++|||||||.++|++.|++++|+++++.++|.++|.+. +| |.+.|+|||++.+.... +++.
T Consensus 87 ~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg~D~~~~~~Gg~~~~~~~~----------~l~~ 156 (302)
T PRK03926 87 GSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASPTDTYVSTMGGFVTIPDRK----------KLPF 156 (302)
T ss_pred CCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCchHHHHHHhcCCeEEEcCCC----------cCCC
Confidence 99999999999999999999999999999999999654 22 56889999998764221 2321
Q ss_pred CCCCCCceEEEEEECCCCCccCchhhhhhhhcc-c----hhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhh
Q 017031 152 EEHWNDLVIIIAVVSSRQKETSSTTGMRESVET-S----LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQF 226 (378)
Q Consensus 152 ~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~t-s----~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~l 226 (378)
++++++ ++.|. +..+|.+..+. ++. . ..++...+. +......+..++.++|++.|++++..| +.
T Consensus 157 ----~~~~~v-l~~~~--~~~sT~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~l~~~~~~~--~~ 225 (302)
T PRK03926 157 ----PECGIV-VGYTG--SSGSTKELVAN-VRKLKEEYPELIEPILSS-IGKISEKGEELILSGDYVSLGELMNIN--QG 225 (302)
T ss_pred ----CCceEE-EEECC--CCCcHHHHHHH-HHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHH--HH
Confidence 333433 34443 34554443222 211 0 111112221 233445667889999999999987432 22
Q ss_pred hhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCc--eeEEEecCcchHHHHHHHHHhh
Q 017031 227 HAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFF 293 (378)
Q Consensus 227 ha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP--~v~~i~~~~~~~~~v~~~l~~~ 293 (378)
+ ++. .-..+|...++++.+.+ .|+. ++.+||||| ++++++++++..+ +.+.+.+.
T Consensus 226 ~---~~~---~~~~~p~l~~l~~~~~~----~ga~-ga~lSGaG~Gg~v~~l~~~~~~~~-~~~~~~~~ 282 (302)
T PRK03926 226 L---LDA---LGVSTKELSELIYAART----AGAL-GAKITGAGGGGCMVALAAPEKQSE-VATAIKIA 282 (302)
T ss_pred H---HHh---cCCCCHHHHHHHHHHHh----CCCc-eeeeccCCCCCEEEEEeccccHHH-HHHHHHhc
Confidence 2 221 12356666666665553 5877 677899999 8999998776555 88877754
No 26
>PRK01123 shikimate kinase; Provisional
Probab=99.87 E-value=3.3e-20 Score=179.38 Aligned_cols=227 Identities=13% Similarity=0.085 Sum_probs=149.2
Q ss_pred CCCCeeEEEEecCCCCCeEEECCeec---ccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCc
Q 017031 5 ASPLIPITSVLPQPLPSVLALTKIEI---SLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA 81 (378)
Q Consensus 5 ~~~~~~~t~v~~~~~~D~i~lnG~~~---~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~a 81 (378)
+.+++++++|.+. ++.++++|... ..+.+.+.++++.+++..+. ..+++|.++++||.+
T Consensus 26 ~i~l~~~v~v~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~i~i~s~IP~~ 87 (282)
T PRK01123 26 GIDLKTTATVELS--DDGGGIEGEISGNPDADTRLIERCVELVLERFGI----------------DYGATVRTKSEIPLA 87 (282)
T ss_pred EeccEEEEEEEEC--CCCceeeecccCCCCCCchHHHHHHHHHHHHhCC----------------CCCEEEEEecCCCCC
Confidence 5578999999764 34455554421 12256788888888887653 348999999999999
Q ss_pred ccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc--------cC---cchhccccCeEEEecccCCCCCCceEEEcc
Q 017031 82 AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--------SG---SACRSLFGGFVKWILGKEGNGSDSLAVQLV 150 (378)
Q Consensus 82 aGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~g--------sG---sa~rsl~GG~v~~~~g~~~dg~ds~~~~i~ 150 (378)
+|||||||+++|++.|++++++++++.+||.++|.+. +| ++++|+|||++++.... .....+++
T Consensus 88 ~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~~~~~~~~-----~~~~~~~~ 162 (282)
T PRK01123 88 SGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGVTVTDNRE-----MKLLKRDE 162 (282)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCEEEEcCCC-----ceEEEEec
Confidence 9999999999999999999999999999999999773 34 67899999998865321 12233443
Q ss_pred CCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhc
Q 017031 151 DEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVC 230 (378)
Q Consensus 151 ~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~ 230 (378)
+ ++++++ ++|.. .++|.+ .+..+ + .. .....+++..+++.+|+..+.. .|. .
T Consensus 163 ~-----~~~~vv-~~p~~--~~~T~~-~r~~~-----l----~~-~~~~~d~~~~~~~~~~l~~~~~---~~~-l----- 214 (282)
T PRK01123 163 V-----ELDVLV-LIPPE--GAFSAS-ADVER-----M----KL-IAPYVDMAFELALDGEYFKAMT---LNG-L----- 214 (282)
T ss_pred C-----CcEEEE-EECCC--Ccchhh-hhhhh-----c----hh-cCcHHHHHHHHHhhccHHHHHH---hCC-c-----
Confidence 1 245554 45653 333322 22111 1 11 1223355566667788763332 221 1
Q ss_pred ccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhh
Q 017031 231 LDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFF 293 (378)
Q Consensus 231 ~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~ 293 (378)
++...+.+.. +++.... +.|++ ++.+||+||++++++++++..+ +.+.|++.
T Consensus 215 ----~~~~~l~~~~-~~i~~a~----~~Ga~-ga~lSGaGptv~al~~~~~~~~-v~~~l~~~ 266 (282)
T PRK01123 215 ----LYSSALGFPT-EPALEAL----EAGAV-GVGLSGTGPSYVAIVDEEDPEE-VKEAWEKY 266 (282)
T ss_pred ----hhhhhhCCCh-HHHHHHH----HCCCe-EEEEecCCCeEEEEeCCCCHHH-HHHHHHhC
Confidence 2223344443 3333322 36887 6778899999999998776665 88888874
No 27
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=1e-19 Score=175.12 Aligned_cols=225 Identities=11% Similarity=0.062 Sum_probs=145.8
Q ss_pred CCCCeeEEEEecCCCCCeEEECCee--cccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcc
Q 017031 5 ASPLIPITSVLPQPLPSVLALTKIE--ISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 82 (378)
Q Consensus 5 ~~~~~~~t~v~~~~~~D~i~lnG~~--~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aa 82 (378)
..+++.+-++.+.. ++.+.+.+.. .....+.+.++++.+++..+. ..+++|.++++||.++
T Consensus 38 ~i~l~D~v~i~~~~-~~~~~i~~~~~~~~~~~N~v~~a~~~l~~~~~~----------------~~~~~i~i~k~IP~ga 100 (271)
T PRK00343 38 FLDWGDTLHFEVRD-DGEIRLLTPIPGVPEEDNLIVRAARLLQKATGT----------------PLGADISLDKRLPMGG 100 (271)
T ss_pred EcccceEEEEEECC-CCcEEEeCCCCCCCCcccHHHHHHHHHHHHhCC----------------CCCeEEEEEcCCCCcC
Confidence 44566666666543 2445554432 122367888999999887654 3479999999999999
Q ss_pred cCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEE
Q 017031 83 GLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIII 162 (378)
Q Consensus 83 GLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vi 162 (378)
|||||||.+||++.|+|++|+++++.+||.++|.++++|++.++.||. .+..|.++ ..+++++ |+.++ +
T Consensus 101 GLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~igaDvp~~l~g~~-~~~~g~g~-----~~~~l~~----~~~~~-v 169 (271)
T PRK00343 101 GLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLGADVPVFVRGHA-AFAEGIGE-----ILTPVDL----PEKWY-L 169 (271)
T ss_pred CCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCceEEecCCc-EEEEecCC-----EEEECCC----CCcEE-E
Confidence 999999999999999999999999999999999999889866666665 45554321 2455532 33444 3
Q ss_pred EEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCc
Q 017031 163 AVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMND 242 (378)
Q Consensus 163 lvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~ 242 (378)
++.|.. .++|.+..++... ........+..+.. +. ..|.|+.+.+..+|
T Consensus 170 l~~p~~--~~sT~~~~~~~~~--------~~~~~~~~~~~~~~----~~----------~~Ndle~~~~~~~P------- 218 (271)
T PRK00343 170 VVKPGV--HISTAEIFSDPDL--------TRDTPKISIADFLA----GP----------FRNDCEPVVRKRYP------- 218 (271)
T ss_pred EEeCCC--CcChHHHHhhhhh--------ccCCChhhHHHHHh----cc----------ccCCHHHHHHHhCh-------
Confidence 555543 5666554432110 00000111111111 11 13557766655444
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCC
Q 017031 243 TSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 295 (378)
Q Consensus 243 ~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~ 295 (378)
...++.+.+. +.|+ +.+||||||+|+++++++..+++.+.+++.|+
T Consensus 219 ~~~~~~~~l~----~~ga---~~mSGSG~tvF~l~~~~~~a~~~~~~l~~~~~ 264 (271)
T PRK00343 219 EVAQALSWLL----EYAP---SRMTGTGACVFAEFDTEAEAEQVLAQLPEWLQ 264 (271)
T ss_pred HHHHHHHHHH----hCCC---eEEeccccceEEEcCCHHHHHHHHHHhhhhcc
Confidence 4455555443 3565 67899999999999987776668888887764
No 28
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=1.4e-19 Score=174.84 Aligned_cols=228 Identities=14% Similarity=0.101 Sum_probs=142.5
Q ss_pred CCeeEEEEecCCCC-CeEEECCeeccc-CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccC
Q 017031 7 PLIPITSVLPQPLP-SVLALTKIEISL-GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 84 (378)
Q Consensus 7 ~~~~~t~v~~~~~~-D~i~lnG~~~~~-~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGL 84 (378)
.|+-+-+|.+.... -++..++...+. +.+.+.++++.+++..+. ..+++|+++++||.++||
T Consensus 37 ~l~d~v~v~~~~~~~~~i~~~~~~~p~~~~nl~~~a~~~~~~~~~~----------------~~~~~i~i~~~IP~~~GL 100 (280)
T PRK14614 37 DLCDEIEIALSDGPGIRVTCGREGVPDGPGNIAWRAADALLDLSGR----------------EVGIDISITKNIPVAAGL 100 (280)
T ss_pred CCCeEEEEEECCCCCEEEEeCCCCCCCCCCcHHHHHHHHHHHHhCC----------------CCceEEEEEecCCCcCcc
Confidence 56666677654221 123333332222 267788888888877653 247899999999999999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEE
Q 017031 85 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAV 164 (378)
Q Consensus 85 gSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilv 164 (378)
|||||.++|+++|++++++.+++.+++.++|...++|++.+++||+++ ..|.+ . ..+++.. -++++++ ++
T Consensus 101 Gsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G~Dv~~~l~gg~~~-~~g~g---e--~~~~l~~---~~~~~iv-l~ 170 (280)
T PRK14614 101 GGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLGADVPFFIFKKTAL-AEGIG---D--KLTAVEG---VPPLWVV-LV 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcceeeeCCcEE-EEEcC---c--eeEECCC---CCCcEEE-EE
Confidence 999999999999999999999999999999998888999999999976 33321 1 1344432 2455544 44
Q ss_pred ECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHH--HHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCc
Q 017031 165 VSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQM--EEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMND 242 (378)
Q Consensus 165 v~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l--~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~ 242 (378)
.|. ..++|.+..+....+.. ..+ .+.+..+..+ +.++..+| |..+.++.+ |
T Consensus 171 ~p~--~~~sT~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~nd--------------le~~~~~~~-------p 223 (280)
T PRK14614 171 NPG--LHVSTAWVYQNLRLTSR--KDL--AIIPRFFGSVAEVCALLSND--------------LESVTIGRF-------P 223 (280)
T ss_pred CCC--CCCCHHHHHhccccccc--Ccc--hhhhhhhhhHHHHhhhcccC--------------cHHHHHhcC-------h
Confidence 453 46666555432211000 000 0001111111 11222334 444433333 3
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHh
Q 017031 243 TSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLF 292 (378)
Q Consensus 243 ~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~ 292 (378)
...++++.+.+ .|+. ++.+|||||++|++++++...+++.+.+++
T Consensus 224 ~l~~i~~~~~~----~Gal-ga~lSGSG~tv~~l~~~~~~~~~~~~~l~~ 268 (280)
T PRK14614 224 VIGEIKEELLA----AGAR-GSLMSGSGSTVFGLFDDEAAARAAAEELSR 268 (280)
T ss_pred HHHHHHHHHHh----CCCC-EEEEeccccceEEEeCCHHHHHHHHHHhhh
Confidence 45555555543 6887 777899999999999877655447777666
No 29
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.84 E-value=6.9e-19 Score=168.52 Aligned_cols=224 Identities=14% Similarity=0.092 Sum_probs=144.9
Q ss_pred CCCCeeEEEEecCCCCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccC
Q 017031 5 ASPLIPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 84 (378)
Q Consensus 5 ~~~~~~~t~v~~~~~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGL 84 (378)
+-+++++++|.+.. ++++.+ .-. ...+++.++++.+++.++. ..+++|.++++||.++||
T Consensus 20 aI~~~~~v~v~~~~-~~~~~~--~~~-~~~n~i~~~~~~~~~~~~~----------------~~g~~i~i~s~iP~~~GL 79 (261)
T TIGR01920 20 GIDLWVEAKVREGD-EAGVST--YVR-GNPRLIERILTAIRSKFGI----------------VDGLEVEVESEIPAGSGL 79 (261)
T ss_pred EccCceEEEEEECC-CCceee--eec-CChHHHHHHHHHHHHhcCC----------------CCCEEEEEecCCCCCCCc
Confidence 34678888887753 333322 111 1136788899988887653 357899999999999999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc--------cC---cchhccccCeEEEecccCCCCCCceEEEccCCC
Q 017031 85 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--------SG---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEE 153 (378)
Q Consensus 85 gSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~g--------sG---sa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~ 153 (378)
|||||.++|++.|++++++++++.+|+.++|.+. .| +++.|+|||++...... ..+..+++
T Consensus 80 GSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG~~~~~~~~-----~~~~~~~~--- 151 (261)
T TIGR01920 80 KSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGGIVITDNRR-----MKILKRDK--- 151 (261)
T ss_pred chHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCCEEEEeCCC-----ceEEEecC---
Confidence 9999999999999999999999999999999773 23 46789999998653211 11222222
Q ss_pred CCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccC
Q 017031 154 HWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDT 233 (378)
Q Consensus 154 ~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~ 233 (378)
.|++.+ ++++|+. .+++....+. .+.. .....+.+..+++.+|+. ++|..|...+ +.
T Consensus 152 -~~~~~~-vv~~p~~--~~tt~~~~~~----------~l~~-~~~~~~~~~~~~~~~~l~---~am~~n~~l~-~~---- 208 (261)
T TIGR01920 152 -LEGCTA-AVLVPKE--GERRENVDLN----------RFRR-ISPVVEEAFNLALRGEYL---KAMVLNGVAY-AT---- 208 (261)
T ss_pred -CCCceE-EEEECCC--CcccccccHH----------Hhhh-cchHHHHHHHHHhhCCHH---HHHhhChHHh-HH----
Confidence 133444 4445653 3333222111 1221 245677778888899987 4444443222 11
Q ss_pred CCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhh
Q 017031 234 SPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFF 293 (378)
Q Consensus 234 ~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~ 293 (378)
.++. .. ++++..+ +.|++ ++.+||+||++++++++. .+ +.+.|++.
T Consensus 209 ~lg~-----~~-~~i~~a~----~~Gal-ga~lSGaG~sv~aL~~~~--~~-v~~~~~~~ 254 (261)
T TIGR01920 209 ALGY-----PL-EPASKAL----EAGAA-AAGLSGKGPSYFALTEDP--EE-AAEALMEF 254 (261)
T ss_pred hhCC-----Ch-HHHHHHH----HcCCc-EEeecCCCCeEEEEeCCH--HH-HHHHHHhC
Confidence 1111 11 2333332 46888 788899999999998755 44 88888763
No 30
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.84 E-value=2.6e-19 Score=169.46 Aligned_cols=212 Identities=15% Similarity=0.160 Sum_probs=159.1
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcc---hhccccCeEEEecccCCCC---
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA---CRSLFGGFVKWILGKEGNG--- 141 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa---~rsl~GG~v~~~~g~~~dg--- 141 (378)
.+++|++.+.||-+.||||.++.+.|+..|++++|++++|-+||+...++|.-|+ ...-+|||++ +.|....-
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG~tSgiGv~afe~GGFIV-DGGh~~~f~ps 148 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRGGTSGIGVYAFEYGGFIV-DGGHSFGFLPS 148 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccCCccceeEEEEEECCEEE-ECCcccCcccC
Confidence 5789999999999999999999999999999999999999999999999986554 3468999985 77763210
Q ss_pred CCc-eEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHH
Q 017031 142 SDS-LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTC 220 (378)
Q Consensus 142 ~ds-~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~ 220 (378)
..+ +..+ .++|+-|.+|+++|+.++..+...+........+.-...+..+++..+.+|+.|+.++|++.|++.+
T Consensus 149 ~~sP~I~R----~dfPedW~~VlaIP~~~rg~~~~~E~~if~~~~p~p~~~~~~ls~~vLm~mmPavvE~Die~fg~~l- 223 (312)
T COG1907 149 SASPLIFR----LDFPEDWRFVLAIPEVERGVSGRREVDIFKKYCPVPLEEVGELSHRVLMKMMPAVVERDIESFGEAL- 223 (312)
T ss_pred CCCceeee----ecCCCceEEEEEecCCCccccchHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHhhCHHHHHHHH-
Confidence 111 1222 3457555667788887667766655444434444444556666788899999999999999999987
Q ss_pred hchhhhhhhc---ccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCC
Q 017031 221 ADSNQFHAVC---LDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 221 ~dsn~lha~~---~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~ 296 (378)
|+++... ++.. ...|+.+...++++.+.+. ++ ++.+|.+|||+|.+++++.... +...+.+.|..
T Consensus 224 ---~~iQ~l~g~~f~~~-e~~~~~~~V~~iv~~m~~~-----a~-~agqSSwGPtvY~i~d~~~~~~-~~~~~~~~~~~ 291 (312)
T COG1907 224 ---NEIQELGGKWFKKV-EGGLQREDVKEIVDEMVEA-----AY-GAGQSSWGPTVYGIVDSREAGS-VVRKLIDILLE 291 (312)
T ss_pred ---HHHHHHHhhhhhhh-hceeccHHHHHHHHHHHHh-----cc-cccccccCCEEEEeccccccch-HHHHHHHHHHh
Confidence 4577776 6653 4668888888888888762 45 6778899999999999988765 55555555533
No 31
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.84 E-value=2.2e-19 Score=172.65 Aligned_cols=204 Identities=15% Similarity=0.126 Sum_probs=130.9
Q ss_pred CeEEECCeeccc--CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccCccchHHHHHHHHHH
Q 017031 21 SVLALTKIEISL--GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSL 98 (378)
Q Consensus 21 D~i~lnG~~~~~--~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al 98 (378)
.++.++|...+. ..+.+.++++.+++..+. .+++|+++|+||+++|||||||++||++.|+
T Consensus 49 ~~~~~~~~~~~~~~~~Nlv~~a~~~~~~~~~~-----------------~~~~i~i~k~IP~~aGLGssss~aaa~l~al 111 (269)
T PRK14609 49 TSLTVSGIPIPGDPEDNLVVKAYNLLKKDFPL-----------------PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLL 111 (269)
T ss_pred EEEEeCCCCCCCCccccHHHHHHHHHHHHcCC-----------------CCeEEEEecCCCCCCcccHHHHHHHHHHHHH
Confidence 345667764432 267888999988887552 3789999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhh
Q 017031 99 AKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGM 178 (378)
Q Consensus 99 ~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m 178 (378)
+++++++++.++|.++|.+.++|++.+++||.+. ..|.++ ...++... .+++++ +++.|. ..++|.+..
T Consensus 112 ~~~~~~~l~~~~l~~la~~iGaDvpffl~g~~a~-~~G~Ge-----~l~~l~~~--~~~~~~-vlv~P~--~~~sT~~a~ 180 (269)
T PRK14609 112 NDKFNLGLSDEELEAYAATLGADCAFFIRNKPVY-ATGIGD-----IFSPIDLS--LSGYYI-ALVKPD--IHVSTAEAY 180 (269)
T ss_pred HHHhCCCcCHHHHHHHHHHhCCCceEEccCCCEE-EEEeCC-----eeEECCCC--CCCCEE-EEECCC--CCCChHHHH
Confidence 9999999999999999999888888899999864 333321 23444211 134444 344454 366665554
Q ss_pred hhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhc
Q 017031 179 RESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV 258 (378)
Q Consensus 179 ~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~ 258 (378)
+.. +... . ...+..+ + ..+...+...+ .|.|.......+| ...++++.+. +.
T Consensus 181 ~~l-~~~~------~---~~~~~~~---~-~~~~~~~~~~l---~Ndle~~~~~~~p-------~l~~i~~~l~----~~ 232 (269)
T PRK14609 181 AGI-KPHK------P---ETSLKEI---I-RQPVEEWKNKL---VNDFEDSVFPKYP-------EIAEIKEKLY----RS 232 (269)
T ss_pred Hhh-hhcC------c---chhhHHH---H-hhHHHHHHhhc---CCChHHHHHHcCh-------HHHHHHHHHH----hC
Confidence 432 2110 0 0001111 1 11111111111 2445554444333 5555555444 36
Q ss_pred CCCeEEEEeCCCceeEEEecCcc
Q 017031 259 GSPQVAYTFDAGPNAVLIARNRK 281 (378)
Q Consensus 259 G~~~~a~tsgAGP~v~~i~~~~~ 281 (378)
|+. ++.+||||||+|+++.+++
T Consensus 233 ga~-~~~mSGSG~tvf~l~~~~~ 254 (269)
T PRK14609 233 GAL-YAAMSGSGSSVFGIFKKPP 254 (269)
T ss_pred CCC-eEEEeCccceeEEEECChH
Confidence 887 7889999999999997654
No 32
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.82 E-value=3.7e-19 Score=166.89 Aligned_cols=224 Identities=17% Similarity=0.187 Sum_probs=152.2
Q ss_pred CCCCeeEEEEecCCCCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccC
Q 017031 5 ASPLIPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 84 (378)
Q Consensus 5 ~~~~~~~t~v~~~~~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGL 84 (378)
.-+|+++++|.+. |+...-|.+. .+.+++.+|++.++++++. ..++++++++.||++.||
T Consensus 26 gidL~v~a~v~~~---~~~~~~~~~~-~d~~li~~~~~~v~e~~g~----------------~~~~~v~v~SeiP~~~GL 85 (278)
T COG1685 26 GIDLKVEAEVRLS---DEGKVRGEPE-GDTRLIERCVERVREKYGI----------------PLGVEVEVESEIPVGSGL 85 (278)
T ss_pred eecceEEEEEEEc---CccccccCCC-CChHHHHHHHHHHHHHcCC----------------CcceEEEEecCCCcccCc
Confidence 3467888888775 3444445443 3467899999999999987 568999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc---C--------cchhccccCeEEEecccCCCCCCceEEEccCCC
Q 017031 85 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS---G--------SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEE 153 (378)
Q Consensus 85 gSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs---G--------sa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~ 153 (378)
.||||..+|++.|+.+++|.++++-++.+++.+.| | |+|.|+|||+|+.++.+- .+..+.
T Consensus 86 kSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~GG~~iTDN~~m-----~Ilrr~---- 156 (278)
T COG1685 86 KSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSVTGAFDDACASYLGGIVITDNRKM-----RILRRL---- 156 (278)
T ss_pred chhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceEeccchHHHHHHhCCeEEecchhh-----eehhcc----
Confidence 99999999999999999999999999999986553 2 689999999999876431 122221
Q ss_pred CCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccC
Q 017031 154 HWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDT 233 (378)
Q Consensus 154 ~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~ 233 (378)
.-|++.++|++ |.. |..+.....+++ ..+..+++. ....-..|+| +.|+.+++
T Consensus 157 ~~~~~~vlI~~-p~~-k~~~~~vdv~~~----r~~a~~~e~--------A~~lA~~G~~-------------~~Am~lNG 209 (278)
T COG1685 157 DLPELTVLILA-PGE-KRLSANVDVNRL----RLIAPVVEE--------AFRLALKGEY-------------FKAMVLNG 209 (278)
T ss_pred ccCCceEEEEe-cCC-ccccccCCHHHH----HHhhHHHHH--------HHHHHhcccH-------------HHHHHHhH
Confidence 23566666554 443 222222111111 111112221 1111223343 45555555
Q ss_pred CCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhh
Q 017031 234 SPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFF 293 (378)
Q Consensus 234 ~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~ 293 (378)
.-|+..|.-....+.+.++ .|+. ++..||.||..|+++++. .+ +.+.|.++
T Consensus 210 ~~y~~aLG~~~e~~~~ale-----~GA~-~aglSGtGPa~~Al~~~~--~~-v~ea~~~~ 260 (278)
T COG1685 210 ILYCSALGYDLEPALKALE-----AGAA-AAGLSGTGPAYFALTEDP--EE-VAEAWSKI 260 (278)
T ss_pred HHHHHHhCCChHHHHHHHh-----cccc-eeccCCCCCceEEEecCc--HH-HHHHHHhC
Confidence 5566666666766666665 4776 788899999999999877 34 88887765
No 33
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.81 E-value=2.8e-18 Score=164.42 Aligned_cols=182 Identities=20% Similarity=0.262 Sum_probs=124.9
Q ss_pred ceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc--------cC-cchhccccCeEEEecccCC
Q 017031 69 HLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--------SG-SACRSLFGGFVKWILGKEG 139 (378)
Q Consensus 69 ~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~g--------sG-sa~rsl~GG~v~~~~g~~~ 139 (378)
+++|.++++||.++|||||||.++|++.|++++++.+++.++|.++|+++ +| |.+.|+|||++.++.+..
T Consensus 78 ~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG~D~~~~~~Gg~~~~~~~~~- 156 (273)
T TIGR00549 78 PLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSGIDTATSTYGGPVYFEKGEG- 156 (273)
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCchHhHHHHhcCCeEEEEcCCC-
Confidence 48999999999999999999999999999999999999999999999864 23 577899999998764421
Q ss_pred CCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhh---hccch-hHHHHHhhhchHhHHHHHHHHHcCCHHHH
Q 017031 140 NGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES---VETSL-LLQHRAKEVVPKRIVQMEEAIQNHDFSSF 215 (378)
Q Consensus 140 dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~---~~ts~-~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~ 215 (378)
..++.++ ++++++ ++.+ . ...+|.+..+.. ....+ .++...+. ..+++.+++.+|.++|++.|
T Consensus 157 ------~~~~~~~---~~~~lv-l~~t-g-~~~~T~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~l 223 (273)
T TIGR00549 157 ------EFTKLIS---LDGYFV-IADT-G-VSGSTKEAVARVRQLLERFPELIDSIMDA-IGELTLEAKAALQDGDVESL 223 (273)
T ss_pred ------ceeeccC---CCeEEE-EEEC-C-CCCcHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHH
Confidence 1122211 233333 3333 2 244444333221 11111 22223332 35678889999999999999
Q ss_pred HHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEe
Q 017031 216 AQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIA 277 (378)
Q Consensus 216 ~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~ 277 (378)
++++..+...+|+..+ .+|...++++.+++ .|+. ++-+||||+.-|+|+
T Consensus 224 g~l~~~~~~~l~~~~v--------s~p~l~~l~~~~~~----~Ga~-gaklsGaG~GG~~i~ 272 (273)
T TIGR00549 224 GELMNINQGLLKALGV--------SHPKLDQLVETARK----AGAL-GAKLTGAGGGGCMIA 272 (273)
T ss_pred HHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHH----CCCc-eeeeccCCCCceEEe
Confidence 9998766566766432 24555566655554 5887 777889999988875
No 34
>PRK05905 hypothetical protein; Provisional
Probab=99.80 E-value=2.1e-18 Score=164.47 Aligned_cols=187 Identities=13% Similarity=0.121 Sum_probs=125.1
Q ss_pred cchHH-HHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHH
Q 017031 34 GGRYQ-NCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLS 112 (378)
Q Consensus 34 ~~r~~-~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs 112 (378)
.+-+. ++++.+++.++. ..+++|+++|+||+++|||||||.+||++.+||++|+ ++.++|.
T Consensus 66 ~nli~~ka~~~l~~~~~~----------------~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~ 127 (258)
T PRK05905 66 SRLILVKTLEWLRDKYNI----------------KNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYK 127 (258)
T ss_pred cchHHHHHHHHHHHHhCC----------------CCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHH
Confidence 45677 889999888764 3579999999999999999999999999999999998 6899999
Q ss_pred HHHHhccCcchhcccc-CeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHH
Q 017031 113 AIARQGSGSACRSLFG-GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHR 191 (378)
Q Consensus 113 ~lAr~gsGsa~rsl~G-G~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~ 191 (378)
++|.+.+.|+++|++| |.+ |..|.++ ..+++. ..+..+ +++|.|. ..+||.+.++..-.+.+
T Consensus 128 ~ia~~lGADVPFfl~g~~~a-~~~G~GE-----~l~pl~---~~~~~~-~vlv~P~--~~vST~~vY~~~~~~~~----- 190 (258)
T PRK05905 128 DVVNKLGSDIPFFLSGYKTA-YISDYGS-----QVEDLI---GQFKLT-YKVIFMN--VNVSTKKVFEKFDDNQH----- 190 (258)
T ss_pred HHHHHhCCCcceEEeCCccE-EEEeeCc-----eeEECC---CCCCce-EEEECCC--CCCCHHHHHHhhccccC-----
Confidence 9999999999999999 886 4566532 234442 122333 4455554 47888777654211100
Q ss_pred HhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCc
Q 017031 192 AKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP 271 (378)
Q Consensus 192 i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP 271 (378)
. .......++..+.++. ... -.|.|+++.+..+| ...++.+.+.+ .|. .+.||||||
T Consensus 191 ~---~~~~~~~~~~~~~~~~----~~~---~~NdLe~~a~~~~P-------~i~~~~~~l~~----~g~--~a~MSGSGs 247 (258)
T PRK05905 191 V---IKNNFKTIIKNLKENI----VVN---IHNDLQEPCFELYP-------NLLYKYNELLN----DGF--YTILSGAGS 247 (258)
T ss_pred C---cccchHHHHHHHHHhh----hcc---cccccHHHHHHhCh-------HHHHHHHHHHh----CCC--CEEEeCcch
Confidence 0 0011111222222211 111 14778888877666 44445555443 464 577999999
Q ss_pred eeEEEec
Q 017031 272 NAVLIAR 278 (378)
Q Consensus 272 ~v~~i~~ 278 (378)
|+|++-.
T Consensus 248 tvF~l~~ 254 (258)
T PRK05905 248 SFIVIKK 254 (258)
T ss_pred hheEEee
Confidence 9999854
No 35
>PRK03817 galactokinase; Provisional
Probab=99.79 E-value=4e-17 Score=162.43 Aligned_cols=211 Identities=18% Similarity=0.209 Sum_probs=132.5
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcc---hhccccCeEEEecccC----CC
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA---CRSLFGGFVKWILGKE----GN 140 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa---~rsl~GG~v~~~~g~~----~d 140 (378)
.+++|.++++||.++|||||||.++|++.|++++++++++..++.++|.+++.+. +..++++++....+.. .|
T Consensus 85 ~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~~ 164 (351)
T PRK03817 85 GGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFLD 164 (351)
T ss_pred CCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEEe
Confidence 5799999999999999999999999999999999999999999999999887642 1123333332111100 00
Q ss_pred CCCceEEEccCCCCCCCceEEEEEECCCCCccCch------hhhhhhh---c-------cc-------hhHHHHHhhhc-
Q 017031 141 GSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSST------TGMRESV---E-------TS-------LLLQHRAKEVV- 196 (378)
Q Consensus 141 g~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt------~~m~~~~---~-------ts-------~~~~~~i~~~~- 196 (378)
..+....+++.+ ++++++ ++.+.....++++ ..++..+ . +. +.+..++.+++
T Consensus 165 ~~~~~~~~~~~~---~~~~~v-v~~sg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~v~ 240 (351)
T PRK03817 165 TMTLEYEYVPFP---EDYEIL-VFDTGVKRELASSEYNERRQECEEALKILGKKSSKEVTEEDLSKLPPLLRKRAGYVLR 240 (351)
T ss_pred cCCCceEEEecC---CCcEEE-EEeCCCccccccchhHHHHHHHHHHHHHhCccchhcCCHHHHHhCCHHHHHHHHHHHH
Confidence 011112233221 234444 4444433333322 1111100 0 00 11111222221
Q ss_pred -hHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCC--cee
Q 017031 197 -PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNA 273 (378)
Q Consensus 197 -~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAG--P~v 273 (378)
.+++..++.|++++|++.|++++...+..||.... . .+|...++++...+ .|++ ++-+|||| |++
T Consensus 241 e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~~------~-s~p~ld~l~~~a~~----~Gal-GaklsGaG~Gg~v 308 (351)
T PRK03817 241 ENERVLKVRDALKEGDIETLGELLTESHWDLADNYE------V-SCEELDFFVEFALE----LGAY-GARLTGAGFGGSA 308 (351)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcC------C-CcHHHHHHHHHHHH----cCCC-EEEEecCCCCeEE
Confidence 35788999999999999999998765566776322 2 35566666665554 5888 66677988 999
Q ss_pred EEEecCcchHHHHHHHHHhhCC
Q 017031 274 VLIARNRKIATELLQRLLFFFP 295 (378)
Q Consensus 274 ~~i~~~~~~~~~v~~~l~~~f~ 295 (378)
+++++++..++ +.+.+++.|.
T Consensus 309 lal~~~~~~~~-~~~~l~~~~~ 329 (351)
T PRK03817 309 IALVDKGKFES-IGEELLEEYK 329 (351)
T ss_pred EEEEchHHHHH-HHHHHHHHHH
Confidence 99998876666 8888877653
No 36
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.76 E-value=2.1e-16 Score=153.86 Aligned_cols=251 Identities=18% Similarity=0.209 Sum_probs=161.3
Q ss_pred cccCCCCeeEEEEecCCCCCeEEECCee--cc---c--CcchHHHHHHHHHHhcccccccccccccccccccccceEEEE
Q 017031 2 IASASPLIPITSVLPQPLPSVLALTKIE--IS---L--GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIAS 74 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~~~~~D~i~lnG~~--~~---~--~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s 74 (378)
|+.+-+.+.++++..+. +.++++.... .. . +...++..++.+.+.... ....++++.+
T Consensus 24 I~~aI~~~~~v~~~~s~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~--------------~~~~~~~l~I 88 (307)
T COG1577 24 IAAAIDLRVTVTISESD-SNKIVIESSDLKSSTLERDEDEGYIQAAVRLASELLNQ--------------SSLKPFSLEI 88 (307)
T ss_pred hheeeeeeEEEEEEecC-CCcEEEeccCCCCccccccccchHHHHHHHHHHHHhcc--------------cCCCCeEEEE
Confidence 67788889999988763 3345544332 11 1 124555566666665542 0146899999
Q ss_pred ecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHH------hccC---cchhccccCeEEEecccCCCCCCce
Q 017031 75 FNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR------QGSG---SACRSLFGGFVKWILGKEGNGSDSL 145 (378)
Q Consensus 75 ~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr------~gsG---sa~rsl~GG~v~~~~g~~~dg~ds~ 145 (378)
.+++|.++|||||||+.+|++.|++++||.+++++++.++|. +|.+ |.+-|+|||++.+.++..
T Consensus 89 ~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~Sg~D~a~~~~gg~v~~~~~~~------- 161 (307)
T COG1577 89 DSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASGIDIATITYGGLVAFKKGFD------- 161 (307)
T ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCCcccceEEEeCCEEEEecCCC-------
Confidence 999999999999999999999999999999999999999995 3433 566799999997765421
Q ss_pred EEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhc-----cchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHH
Q 017031 146 AVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE-----TSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTC 220 (378)
Q Consensus 146 ~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~-----ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~ 220 (378)
.+++.. .|.. .++|... ....+|. .+.+.+. ....+...++. ..+.+.++..+++++|++.|+++|.
T Consensus 162 ~~~l~~--~~~~---~~~I~~t-g~~~sT~-e~V~~V~~l~~~~~~~~~~~~~~-ig~~~~~a~~al~~~d~e~lgelm~ 233 (307)
T COG1577 162 FEKLEI--ELLG---TLVIGDT-GVPGSTK-ELVAGVAKLLEEEPEVIDPILDA-IGELVQEAEAALQTGDFEELGELMN 233 (307)
T ss_pred cccccc--ccCC---eEEEEEc-CCcCcHH-HHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHH
Confidence 233322 1222 2233232 2334444 3322221 12334444444 4678899999999999999999998
Q ss_pred hchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCc--chHHHHHHHHHhhCC
Q 017031 221 ADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNR--KIATELLQRLLFFFP 295 (378)
Q Consensus 221 ~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~--~~~~~v~~~l~~~f~ 295 (378)
.++..|.+...+ ++....+++..+ ..|+.++. ++|||-.-++|+..+ +.++++.+.+.+++-
T Consensus 234 ~nq~LL~~LgVs--------~~~L~~lv~~a~----~~Ga~gaK-lTGAGgGGc~IaL~~~~~~~~~l~~~~~~~~i 297 (307)
T COG1577 234 INQGLLKALGVS--------TPELDELVEAAR----SLGALGAK-LTGAGGGGCIIALAKNEEIAETLSNRLEKAGI 297 (307)
T ss_pred HHHHHHHhcCcC--------cHHHHHHHHHHH----hcCccccc-cccCCCCceEEEEeccchHHHHHHHHHHhcCc
Confidence 887777776653 334444444444 35776444 458888755555433 333346666665553
No 37
>PRK00555 galactokinase; Provisional
Probab=99.76 E-value=2.9e-16 Score=157.06 Aligned_cols=208 Identities=15% Similarity=0.152 Sum_probs=130.8
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--------C--cchhccccCe--EEE-e
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS--------G--SACRSLFGGF--VKW-I 134 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs--------G--sa~rsl~GG~--v~~-~ 134 (378)
.+++|.+.++||.++|||||||..+|++.|++++++++++.+++.++|.+++ | |...|+|||. +++ +
T Consensus 90 ~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~~d 169 (363)
T PRK00555 90 PGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLID 169 (363)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEEEE
Confidence 4789999999999999999999999999999999999999999999997553 3 4455999974 333 3
Q ss_pred cccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchh-------hhhhh---hccc------h------------
Q 017031 135 LGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTT-------GMRES---VETS------L------------ 186 (378)
Q Consensus 135 ~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~-------~m~~~---~~ts------~------------ 186 (378)
... -...+++.+..++.+. ++|++...+...++. .++.. +.+. +
T Consensus 170 ~~~------~~~~~v~~~~~~~~~~--lvv~~s~~~~~~~~~~y~~rr~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 241 (363)
T PRK00555 170 FRD------LTVRPVAFDPDAAGVV--LLLMDSRARHRHAGGEYAARRASCERAAADLGVSSLRAVQDRGLAALGAIADP 241 (363)
T ss_pred cCC------CcEEEeccCCCcCceE--EEEEcCCCcccccchhhHHHHHHHHHHHHHhCccchhcCCHHHHHHHHhcCCh
Confidence 211 1133443222222233 334444333321111 11100 0000 0
Q ss_pred hHHHHHhhhc--hHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEE
Q 017031 187 LLQHRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVA 264 (378)
Q Consensus 187 ~~~~~i~~~~--~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a 264 (378)
....+..+++ ..++..++.||.++|++.|+++| ++.|..+.+.+ .--++....+++... +.|+. ++
T Consensus 242 ~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm----~~~h~~lr~~~---~vS~~~ld~l~~~a~----~~Ga~-Ga 309 (363)
T PRK00555 242 IDARRARHVLTENQRVLDFAAALADSDFTAAGQLL----TASHASMRDDF---EITTERIDLIADSAV----RAGAL-GA 309 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH----HHhhHHHHhhc---CCCChhHHHHHHHHH----hcCCe-EE
Confidence 0000111111 35889999999999999999987 35677665332 011234444444333 35888 67
Q ss_pred EEeCC--CceeEEEecCcchHHHHHHHHHhhCCC
Q 017031 265 YTFDA--GPNAVLIARNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 265 ~tsgA--GP~v~~i~~~~~~~~~v~~~l~~~f~~ 296 (378)
-+||| ||+++++++.+..++ +.+.+++.|..
T Consensus 310 klsGaG~Gg~vial~~~~~~~~-~~~~l~~~y~~ 342 (363)
T PRK00555 310 RMTGGGFGGCVIALVPADRAED-VADTVRRAAVT 342 (363)
T ss_pred EECCCCccCeEEEEEchhHHHH-HHHHHHHHHHH
Confidence 77899 599999998776665 88888887754
No 38
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.75 E-value=4.5e-17 Score=155.55 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=101.3
Q ss_pred CCeeEEEEecCCCCCeEEECCee-cccCcchHHHHHHHHHHh-cccccccccccccccccccccceEEEEecCCCCcccC
Q 017031 7 PLIPITSVLPQPLPSVLALTKIE-ISLGGGRYQNCLKEIRSR-ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 84 (378)
Q Consensus 7 ~~~~~t~v~~~~~~D~i~lnG~~-~~~~~~r~~~~l~~~r~~-~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGL 84 (378)
.++=+-+|.+.. ++.+.+.|.. .+.+.+.+.++++.+++. ++... . ....+++|+++|+||+++||
T Consensus 34 ~l~D~l~i~~~~-~~~~~i~~~~~~p~~~NLv~kA~~~l~~~~~~~~~--------~---~~~~gv~I~i~K~IP~gaGL 101 (257)
T PRK04181 34 DLFDEIEFVPKS-AESFELIGNFDCPLEENIIYKAYQELKNKGFSNEL--------I---EFFKKKAIEVEKNIPTGAGL 101 (257)
T ss_pred CcCcEEEEEECC-CCCEEEEcCCCCCCCCcHHHHHHHHHHHhcccccc--------c---cCCCceEEEEEeCCCCcCcc
Confidence 454455555421 2335554432 212467888888888773 33100 0 00137999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhcccc-CeEEEecccCCCCCCceEEEccCCCCCCCceEEEE
Q 017031 85 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFG-GFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIA 163 (378)
Q Consensus 85 gSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~G-G~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vil 163 (378)
|||||++||++.++|++|+++++.+||.++|.+.+.|+++|++| |.+ |..|.++ ..++++. -+ .. +++
T Consensus 102 GggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lGaDvPffl~~~~~a-~~~G~Ge-----~l~~l~~---~~-~~-~~l 170 (257)
T PRK04181 102 GGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGADVAFFISGYKSA-NVSGIGE-----IVEEFEE---EI-LN-LEI 170 (257)
T ss_pred cccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCccEEecCCceE-EEEeeCC-----eeEECCC---CC-Ce-EEE
Confidence 99999999999999999999999999999999999999999999 765 4556532 2444421 12 13 445
Q ss_pred EECCCCCccCchhhhh
Q 017031 164 VVSSRQKETSSTTGMR 179 (378)
Q Consensus 164 vv~~~~k~vsSt~~m~ 179 (378)
|.|. ..+||.+.++
T Consensus 171 v~P~--~~vsT~~vy~ 184 (257)
T PRK04181 171 FTPN--IFCSTKAVYK 184 (257)
T ss_pred ECCC--CCcCHHHHHH
Confidence 5554 4788877665
No 39
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.74 E-value=1.1e-15 Score=152.74 Aligned_cols=232 Identities=16% Similarity=0.135 Sum_probs=147.0
Q ss_pred chHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCc----ccCccchHHHHHHHHHHHHHhCCCCCHHH
Q 017031 35 GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA----AGLASSAAGFACLVFSLAKLMNLKENQSQ 110 (378)
Q Consensus 35 ~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~a----aGLgSSAA~aAAlv~Al~~l~~l~ls~~e 110 (378)
+.++.+++.+++...... ....++++.+++++|.+ +|||||||..+|++.|++++|+++++.++
T Consensus 78 ~~v~~~i~~~~~~~~~~~------------~~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~ 145 (358)
T TIGR01220 78 AYVVSAIETVERYAGERN------------QKLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDE 145 (358)
T ss_pred HHHHHHHHHHHHHHHhcC------------CCCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 456667776655543210 00236899999999995 69999999999999999999999999999
Q ss_pred HHHHHHhc--------c-CcchhccccCeEEEecccCC-----------------CCCCceEEEccCCCCCCCceEEEEE
Q 017031 111 LSAIARQG--------S-GSACRSLFGGFVKWILGKEG-----------------NGSDSLAVQLVDEEHWNDLVIIIAV 164 (378)
Q Consensus 111 Ls~lAr~g--------s-Gsa~rsl~GG~v~~~~g~~~-----------------dg~ds~~~~i~~~~~wp~l~~vilv 164 (378)
+.++|..+ | +|...|+|||++.+.+.... +......++++.+ ++++++++
T Consensus 146 l~~lA~~~E~~~~g~~sg~D~~a~~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~---~~~~l~v~- 221 (358)
T TIGR01220 146 IFKLAMLATAELQPKGSCGDIAASTYGGWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAP---KGLTLLIG- 221 (358)
T ss_pred HHHHHHHHHhhhCCCCCcchhhhhhhCCEEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCC---CCCEEEEE-
Confidence 99999532 2 36788999999876532100 0000113344321 23444332
Q ss_pred ECCCCCccCchhhhhhhh----ccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCcccc
Q 017031 165 VSSRQKETSSTTGMRESV----ETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYM 240 (378)
Q Consensus 165 v~~~~k~vsSt~~m~~~~----~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl 240 (378)
... ...+|++.++... ..++.++..++. ..+.+.++.++|+++|++.|++++..+...|+++.-.. ++.+.
T Consensus 222 -~tg-~~~~T~~~v~~V~~~~~~~~~~~~~~l~~-~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~--~~~vs 296 (358)
T TIGR01220 222 -WTG-SPASTASLVSDVHRRKWRGSASYQRFLET-STDCVESAITAFETGDITSLQKEIRRNRQELARLDDEV--GVGIE 296 (358)
T ss_pred -eCC-CCcCcHHHHHHHHHHhhcChHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccc--CCCcC
Confidence 322 2334444333221 112344444554 46778899999999999999999988877888753211 33455
Q ss_pred CchHHHHHHHHHHHHHhcCCCeEEEEeCCCcee--EEEecCcchHHHHHHHHHhh
Q 017031 241 NDTSHRIISYVERWNRSVGSPQVAYTFDAGPNA--VLIARNRKIATELLQRLLFF 293 (378)
Q Consensus 241 ~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v--~~i~~~~~~~~~v~~~l~~~ 293 (378)
++...++++..++ .|+ ++=.+|||-.- ++++.+++..+++.+.|+++
T Consensus 297 ~~~l~~li~~a~~----~ga--~aKlsGAGgGg~~ial~~~~~~~~~~~~~~~~~ 345 (358)
T TIGR01220 297 TEKLKALCDAAEA----YGG--AAKPSGAGGGDCGIAILDAEADITHVRQRWETA 345 (358)
T ss_pred CHHHHHHHHHHhh----cCc--eecCCCCCCcCEEEEEeCCchhHHHHHHHHHHC
Confidence 6777777777665 454 33346888874 44565554444477776653
No 40
>PRK05322 galactokinase; Provisional
Probab=99.73 E-value=1.7e-15 Score=152.74 Aligned_cols=207 Identities=17% Similarity=0.184 Sum_probs=132.3
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--------C--cchhccccC---eEEEe
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS--------G--SACRSLFGG---FVKWI 134 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs--------G--sa~rsl~GG---~v~~~ 134 (378)
.+++|.+.++||.++|||||||..+|++.|+++++++++++++|.++|.+++ | |...|.+|| .+..+
T Consensus 111 ~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d 190 (387)
T PRK05322 111 HGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLD 190 (387)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEe
Confidence 5899999999999999999999999999999999999999999999997653 3 445689998 33333
Q ss_pred cccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCc-----------hhhhhhhhc--------c-c-hhHHH---
Q 017031 135 LGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSS-----------TTGMRESVE--------T-S-LLLQH--- 190 (378)
Q Consensus 135 ~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsS-----------t~~m~~~~~--------t-s-~~~~~--- 190 (378)
... .+ .+.++.+ ++++.+ +|++...+.... .++.+.+.. . . ..+..
T Consensus 191 ~~~----~~--~~~~~~~--~~~~~l--vv~dsg~~~~~~~~~yn~r~~e~~~a~~~l~~~~~~~~l~~~~~~~~~~~~~ 260 (387)
T PRK05322 191 CNT----LE--YEYVPLD--LGDYVI--VIMNTNKRRELADSKYNERRAECEKALEELQKKLDIKSLGELTEEEFDEYSY 260 (387)
T ss_pred cCC----Cc--eEEeccC--CCCeEE--EEEECCCccccCcchhhHHHHHHHHHHHHHhhhcCccchhcCCHHHHHHHHh
Confidence 221 11 2333211 223333 334444333211 011111100 0 0 01111
Q ss_pred ---------HHhhh--chHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcC
Q 017031 191 ---------RAKEV--VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVG 259 (378)
Q Consensus 191 ---------~i~~~--~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G 259 (378)
|+.++ ...++..++.||+++|++.|+++|..++..||..+.-+ . |+...+++...+ ..|
T Consensus 261 ~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y~~s------~-~eld~lv~~a~~---~~G 330 (387)
T PRK05322 261 LIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVT------G-LELDTLVEAAWK---QEG 330 (387)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhhcCC------C-HhHHHHHHHHHh---cCC
Confidence 11111 13578999999999999999999866555688644322 2 445555554432 358
Q ss_pred CCeEEEEeCCCc--eeEEEecCcchHHHHHHHHHhhCCC
Q 017031 260 SPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 260 ~~~~a~tsgAGP--~v~~i~~~~~~~~~v~~~l~~~f~~ 296 (378)
+. ++.+||+|| +++++++.+..++ +.+.+.+.|..
T Consensus 331 a~-garlsGaG~GG~vial~~~~~~~~-~~~~l~~~y~~ 367 (387)
T PRK05322 331 VL-GARMTGAGFGGCAIAIVKKDKVEA-FKENVGKAYEE 367 (387)
T ss_pred cc-EEEEecCCCceEEEEEEcHHHHHH-HHHHHHHHHHH
Confidence 88 777889999 7888888776666 88888776643
No 41
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.70 E-value=2.2e-15 Score=151.88 Aligned_cols=227 Identities=19% Similarity=0.241 Sum_probs=137.2
Q ss_pred chHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 017031 35 GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAI 114 (378)
Q Consensus 35 ~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~l 114 (378)
+.+..++..+++.... ...+++|.+.++||.++|||||||..+|++.|++++++++++.++|.++
T Consensus 91 ~y~~~~~~~~~~~~~~---------------~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~ 155 (386)
T TIGR00131 91 NYFKGVLHVAQERFNS---------------FPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLR 155 (386)
T ss_pred hHHHHHHHHHHHhcCC---------------CCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566777777765432 0358999999999999999999999999999999999999999999999
Q ss_pred HHhcc----C------cchhccccC--eEEEecccCCCCCCceEEEccCCCCCC--CceEEEEEECCCCCccCchhhh--
Q 017031 115 ARQGS----G------SACRSLFGG--FVKWILGKEGNGSDSLAVQLVDEEHWN--DLVIIIAVVSSRQKETSSTTGM-- 178 (378)
Q Consensus 115 Ar~gs----G------sa~rsl~GG--~v~~~~g~~~dg~ds~~~~i~~~~~wp--~l~~vilvv~~~~k~vsSt~~m-- 178 (378)
|..++ | |...|++|| .++|..-. .. ...+++ +| +++++ ++.+..+..+. ....
T Consensus 156 a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~~~---~~--~~~~~~----~~~~~~~lv-v~~s~~~~~t~-~~~y~~ 224 (386)
T TIGR00131 156 IQVAENHFVGVNCGIMDQAASVLGKEDHALLVECR---SL--KATPFK----FPQLGIAFV-IANTNVKRTLA-PSNYNT 224 (386)
T ss_pred HHHHhcCccCCCcchHHHHHHHhccCCcEEEEEcC---CC--ceeeec----CCCCCeEEE-EEeCCCccccc-cchhHH
Confidence 97653 3 234689998 23332211 01 123332 23 34443 33333222111 0110
Q ss_pred --------------------hhhhccc-h-----------hHHHHHhhh--chHhHHHHHHHHHcCCHHHHHHHHHhchh
Q 017031 179 --------------------RESVETS-L-----------LLQHRAKEV--VPKRIVQMEEAIQNHDFSSFAQLTCADSN 224 (378)
Q Consensus 179 --------------------~~~~~ts-~-----------~~~~~i~~~--~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn 224 (378)
+...+.. . ....|..++ -..|+.+++.++.++|++.|+++|...
T Consensus 225 r~~e~~~a~~~l~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~s-- 302 (386)
T TIGR00131 225 RRQECTTAANFLAATDKGALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNES-- 302 (386)
T ss_pred HHHHHHHHHHHhccccccchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHh--
Confidence 1100000 0 000111111 134677899999999999999987432
Q ss_pred hhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCc--eeEEEecCcchHHHHHHHHHhhCCCCCC
Q 017031 225 QFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFFFPPNSE 299 (378)
Q Consensus 225 ~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP--~v~~i~~~~~~~~~v~~~l~~~f~~~~~ 299 (378)
|..+.+. + --.+|+...+++.+ .+..|+. ++=++|+|+ .++++++++..++ +.+.+.+.|+...+
T Consensus 303 --h~~l~~~--~-~vs~peld~lv~~a---~~~~GAl-GakltGaG~GG~vial~~~~~~~~-v~~~~~~~y~~~~~ 369 (386)
T TIGR00131 303 --HASCDDD--Y-ECTCPEIDELVCSA---ALVNGSG-GSRMTGAGFGGCTVHLVPNENVDK-VRQAVADKYPKKTG 369 (386)
T ss_pred --hHHHHHh--c-CCCCHHHHHHHHHH---HhcCCCc-EEEEecCCCceEEEEEEcHHHHHH-HHHHHHHHHHHhhC
Confidence 3333321 1 22333343344333 2346998 555669886 6788888777666 99999888855433
No 42
>PRK05101 galactokinase; Provisional
Probab=99.65 E-value=6.3e-14 Score=141.23 Aligned_cols=226 Identities=14% Similarity=0.178 Sum_probs=133.6
Q ss_pred chHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 017031 35 GRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAI 114 (378)
Q Consensus 35 ~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~l 114 (378)
+.++.++..++..... ..+++|.+.++||.++|||||||..+|++.|+++++++++++.+|.++
T Consensus 94 ~yv~~~~~~l~~~~~~----------------~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~ 157 (382)
T PRK05101 94 NYVRGVVKHLQERNPD----------------FGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALN 157 (382)
T ss_pred HHHHHHHHHHHHhCCC----------------CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3566777777654322 248999999999999999999999999999999999999999999999
Q ss_pred HHhcc----Ccc------hhccccCe--EEE-ecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCc-c-----Cch
Q 017031 115 ARQGS----GSA------CRSLFGGF--VKW-ILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKE-T-----SST 175 (378)
Q Consensus 115 Ar~gs----Gsa------~rsl~GG~--v~~-~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~-v-----sSt 175 (378)
|.+++ |.+ .-|.+||. +++ +... ....+++.+ ++++++| ++...+. . .++
T Consensus 158 a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d~~~------~~~~~~~~~---~~~~~vv--~~sg~~~~l~~~~y~~r 226 (382)
T PRK05101 158 GQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRS------LETKAVPMP---EGVAVVI--INSNVKRGLVDSEYNTR 226 (382)
T ss_pred HHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEEcCC------CceEEeeCC---CCcEEEE--EeCCCCccccccchhHH
Confidence 97653 433 33889972 333 2211 112333321 2344433 3332222 1 122
Q ss_pred h-hhh---h-----hhcc-------------chhHHHHHhhhch--HhHHHHHHHHHcCCHHHHHHHHHhchhhhhh-hc
Q 017031 176 T-GMR---E-----SVET-------------SLLLQHRAKEVVP--KRIVQMEEAIQNHDFSSFAQLTCADSNQFHA-VC 230 (378)
Q Consensus 176 ~-~m~---~-----~~~t-------------s~~~~~~i~~~~~--~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha-~~ 230 (378)
. .++ . .+.. .+....++.+++. .++.+...||+++|++.||++|...+..+.. ..
T Consensus 227 ~~e~~~A~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~~ 306 (382)
T PRK05101 227 RQQCETAARFFGVKALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFE 306 (382)
T ss_pred HHHHHHHHHHhChHhhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhcC
Confidence 1 000 0 0000 0111112222222 4788999999999999999998554433431 11
Q ss_pred ccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCce--eEEEecCcchHHHHHHHHHhhCCCCCC
Q 017031 231 LDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPN--AVLIARNRKIATELLQRLLFFFPPNSE 299 (378)
Q Consensus 231 ~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~--v~~i~~~~~~~~~v~~~l~~~f~~~~~ 299 (378)
+ -+++...+++..++ ..|+.+++=++|+|-. ++++++++..++ +.+.+.+.|....+
T Consensus 307 v--------S~~eld~lv~~a~~---~~Ga~gGakltGaG~GG~~ial~~~~~~~~-~~~~~~~~y~~~~~ 365 (382)
T PRK05101 307 I--------TVPQIDTLVEIVKA---VIGDQGGVRMTGGGFGGCIVALVPEELVEA-VRQAVAEQYEAKTG 365 (382)
T ss_pred C--------CCHhHHHHHHHHHh---ccCCcceEEeccCCCccEEEEEEcHHHHHH-HHHHHHHHHHHhhC
Confidence 2 12334444444433 1265324444577664 666777766666 88888877755433
No 43
>PLN02677 mevalonate kinase
Probab=99.59 E-value=2e-13 Score=137.44 Aligned_cols=180 Identities=16% Similarity=0.206 Sum_probs=116.6
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhC-CCC----------CH---HHHHHHHHhc--------cC-cchh
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMN-LKE----------NQ---SQLSAIARQG--------SG-SACR 124 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~-l~l----------s~---~eLs~lAr~g--------sG-sa~r 124 (378)
.+++|.+++++|+++|||||||..+|++.|++.+++ +++ +. +++.++|..+ || |.+-
T Consensus 128 ~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a~ 207 (387)
T PLN02677 128 NPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTV 207 (387)
T ss_pred CCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHHH
Confidence 367899999999999999999999999999999998 333 23 4666667533 33 5678
Q ss_pred ccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhcc-----chhHHHHHhhhchHh
Q 017031 125 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVET-----SLLLQHRAKEVVPKR 199 (378)
Q Consensus 125 sl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~t-----s~~~~~~i~~~~~~~ 199 (378)
|.|||++.+..+. .+++..+ +++++ +|.... ...+|..+-.-|.. ...++..++. ....
T Consensus 208 s~~Gg~I~f~~~~--------~~~l~~~---~~l~l--lv~dTg--v~~sT~~lV~~V~~~~~~~p~~~~~il~~-~~~i 271 (387)
T PLN02677 208 STYGNMIKFKSGE--------LTRLQSN---MPLKM--LITNTR--VGRNTKALVAGVSERALRHPDAMKSVFNA-VDSI 271 (387)
T ss_pred HhcCCeEEEcCCC--------ceecCCC---CCceE--EEEECC--CCCcHHHHHHHHHHHHHhCHHHHHHHHHH-HHHH
Confidence 9999998765542 2444322 23443 334443 23345444333321 1233333443 4677
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCC
Q 017031 200 IVQMEEAIQN---------HDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG 270 (378)
Q Consensus 200 ~~~l~~Ai~~---------~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAG 270 (378)
.+++..+|++ +|++.|+++|..|+..|.++.++. +....+++..++ .|. ++.. +|||
T Consensus 272 ~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~LGVS~--------~~le~iv~~a~~----~~~-~AKl-TGAG 337 (387)
T PLN02677 272 SEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCMGVSH--------SSIETVLRTTLK----YKL-VSKL-TGAG 337 (387)
T ss_pred HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHcCCCc--------HHHHHHHHHHHH----cCC-cccc-ccCC
Confidence 8889999987 579999999999888888887642 234444444433 342 2444 5998
Q ss_pred ceeEEEe
Q 017031 271 PNAVLIA 277 (378)
Q Consensus 271 P~v~~i~ 277 (378)
-.-++|+
T Consensus 338 gGGC~Ia 344 (387)
T PLN02677 338 GGGCVLT 344 (387)
T ss_pred CCCEEEE
Confidence 7755554
No 44
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.51 E-value=7.4e-13 Score=144.87 Aligned_cols=211 Identities=16% Similarity=0.105 Sum_probs=130.7
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc------cC---cchhccccCeEEEecccC
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG------SG---SACRSLFGGFVKWILGKE 138 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~g------sG---sa~rsl~GG~v~~~~g~~ 138 (378)
.+++|.+.++||.++|||||||..+|++.|++++++.+++.+++.++|..+ .+ |...+.|||++....+..
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~~~i~~~~~ 804 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGVKLLQTGAG 804 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCCeEEEEecCC
Confidence 478999999999999999999999999999999999999999999999643 22 456789999987654431
Q ss_pred CCCCCceEEEccCCCCC-CCceEEEEEECCCCCccCchhhhhh----hhccchhHHHHHhhhchHhHHHHHHHHHcCCHH
Q 017031 139 GNGSDSLAVQLVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRE----SVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFS 213 (378)
Q Consensus 139 ~dg~ds~~~~i~~~~~w-p~l~~vilvv~~~~k~vsSt~~m~~----~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~ 213 (378)
.+. .....+++....+ +++...++++..+. +-+|.+..+. .....+.+...++. ..+...++..||+++|++
T Consensus 805 ~~~-~~~v~~L~~~~~~~~eLe~~LlL~yTGi-tR~T~~iV~~Vv~~~~~~~~~~~~~l~~-ig~La~ea~~ALe~gD~~ 881 (974)
T PRK13412 805 FAQ-SPLVRWLPDSLFTQPEYRDCHLLYYTGI-TRTAKGILAEIVRSMFLNSTAHLQLLHE-MKAHALDMYEAIQRGEFE 881 (974)
T ss_pred ccc-CcceeecCcchhhhhhccCcEEEEECCC-eeeHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHHHHcCCHH
Confidence 111 1123334321111 23322233334432 2223332222 11222223333443 366778899999999999
Q ss_pred HHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEE--EecCcchHHHHHHHHH
Q 017031 214 SFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL--IARNRKIATELLQRLL 291 (378)
Q Consensus 214 ~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~--i~~~~~~~~~v~~~l~ 291 (378)
.||++|..+...++++... --++...++++.++ .|+.++.. +|||-.-|+ ++.+.+.++++.+.++
T Consensus 882 ~LG~LMn~~w~ll~~L~~G------VSnp~LD~Li~~A~-----~gAlGaKL-TGAGGGGcvI~Lak~~~~a~~I~~~L~ 949 (974)
T PRK13412 882 EFGRLVGKTWEQNKALDSG------TNPAAVEAIIELIK-----DYTLGYKL-PGAGGGGYLYMVAKDPGAAERIRKILT 949 (974)
T ss_pred HHHHHHHHHHHHHHhccCC------CCCHHHHHHHHHHH-----cCCcEEEe-cccCcccEEEEEECChhhHHHHHHHHH
Confidence 9999987665566665211 12344555555543 25764444 598877555 5544554544666665
Q ss_pred hh
Q 017031 292 FF 293 (378)
Q Consensus 292 ~~ 293 (378)
+.
T Consensus 950 ~~ 951 (974)
T PRK13412 950 EN 951 (974)
T ss_pred hc
Confidence 53
No 45
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=2.1e-11 Score=120.83 Aligned_cols=215 Identities=20% Similarity=0.228 Sum_probs=140.4
Q ss_pred ceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc----Cc------chhcccc---CeEEEec
Q 017031 69 HLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS----GS------ACRSLFG---GFVKWIL 135 (378)
Q Consensus 69 ~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs----Gs------a~rsl~G---G~v~~~~ 135 (378)
|+.|.+..|||+++||+||||.-+|++.++.++++++++..+|.+|+.+.+ |- -+.+.|| -.++.+.
T Consensus 115 G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~ 194 (390)
T COG0153 115 GLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDC 194 (390)
T ss_pred CeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEc
Confidence 899999999999999999999999999999999999999999999998764 32 2457788 3333332
Q ss_pred ccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhh----------hhhcc---------------------
Q 017031 136 GKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR----------ESVET--------------------- 184 (378)
Q Consensus 136 g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~----------~~~~t--------------------- 184 (378)
. +-..++++ .|...+.++|++...|.-.....+. +.+..
T Consensus 195 ~------~l~~~~~~----~p~~~~~ivI~ns~vkr~la~seYn~Rr~ece~A~~~l~~~~~~L~d~~~~~~~~~~~~i~ 264 (390)
T COG0153 195 R------TLEYEPVP----FPVGGVSIVIVNSNVKRELADSEYNERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAEIE 264 (390)
T ss_pred c------cCceEEec----cCccceEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHhhhhhcc
Confidence 1 11244543 2444455566666654333322210 00000
Q ss_pred -chhHHHHHhhhc--hHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCC
Q 017031 185 -SLLLQHRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 261 (378)
Q Consensus 185 -s~~~~~~i~~~~--~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~ 261 (378)
.+....|..+++ .+|+.+...|++++|+.+||++|+ .=|.-+.+.|- .-.|+...+.+.... ..|++
T Consensus 265 ~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~----~SH~slrddye---vt~pElD~lve~a~~---~~G~~ 334 (390)
T COG0153 265 VDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMN----ESHESLRDDYE---VTCPELDTLVEIALA---AGGAY 334 (390)
T ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHhccc---ccchhHHHHHHHHHH---cCCcc
Confidence 010111222221 568889999999999999999984 45676666542 224455555555543 35666
Q ss_pred eEEEEeCCCce--eEEEecCcchHHHHHHHHHhhCCCCCCCCcccc
Q 017031 262 QVAYTFDAGPN--AVLIARNRKIATELLQRLLFFFPPNSETDLNSY 305 (378)
Q Consensus 262 ~~a~tsgAGP~--v~~i~~~~~~~~~v~~~l~~~f~~~~~~~~~~~ 305 (378)
++=|.|+|=. +++++++++.++ +.+.+.+.|....+++...|
T Consensus 335 -GaRmTGaGfGGc~IaLv~~~~v~~-~~e~v~~~y~~~~g~k~~~y 378 (390)
T COG0153 335 -GARMTGAGFGGCVIALVPNDDVEA-VAEAVAEEYEKVTGLKAAFY 378 (390)
T ss_pred -cceecCCCCCceEEEEechhhHHH-HHHHHHHhHHhhcCccccEE
Confidence 5556677664 677778888877 99999887777665554433
No 46
>PLN02521 galactokinase
Probab=99.45 E-value=4.8e-11 Score=123.83 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=58.9
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---------cchhcccc--CeEEE
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---------SACRSLFG--GFVKW 133 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsG---------sa~rsl~G--G~v~~ 133 (378)
.+++|.++++||.++|||||||..+|++.|++++++++++.+++.++|.+++. +...|++| |.++.
T Consensus 148 ~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~ 224 (497)
T PLN02521 148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKL 224 (497)
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEE
Confidence 48999999999999999999999999999999999999999999999987653 34678999 88754
No 47
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.39 E-value=2.5e-12 Score=120.37 Aligned_cols=205 Identities=20% Similarity=0.179 Sum_probs=145.8
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHH----H-------------------hc------
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIA----R-------------------QG------ 118 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lA----r-------------------~g------ 118 (378)
..-++.+.|-||.++|+|||++...|.++-.|+..++.++...+.... | .+
T Consensus 93 ~~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~ 172 (355)
T KOG1537|consen 93 ITTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAK 172 (355)
T ss_pred cceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhh
Confidence 346788999999999999999999999999999988888765433222 1 11
Q ss_pred -cC----cchhccccCeEEEecccCCCCCCceEEEccCCCCC-CCceEEEEEECCCCCccCchhhhhhhhccchhHHHHH
Q 017031 119 -SG----SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRA 192 (378)
Q Consensus 119 -sG----sa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~w-p~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i 192 (378)
+| +..+.+.|||+....-++.| +..++.. .| ++++++ +|+|+. + -+|..||..++|+.-..+.+
T Consensus 173 ~~~~~ad~ilp~~~gg~~li~~lpP~d----lg~~~r~--pw~~~lk~i-~viP~F--e-l~T~k~R~vLPt~yp~~d~V 242 (355)
T KOG1537|consen 173 VSGYHADNILPAIMGGFVLIRNLPPLD----LGKPLRF--PWDKDLKFI-LVIPDF--E-LPTKKMRAVLPTEYPMVDHV 242 (355)
T ss_pred hcCCCHHHhcccccCCeeeecCCCccc----ccccccC--CCCccceEE-EEeccc--c-ccchhhhhhcCccccceeee
Confidence 11 23567888988765443221 2222221 37 567765 566775 3 35677899999987666655
Q ss_pred hhhchHhHHHHHHHHHcC-CHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCc
Q 017031 193 KEVVPKRIVQMEEAIQNH-DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP 271 (378)
Q Consensus 193 ~~~~~~~~~~l~~Ai~~~-D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP 271 (378)
-+ .+|+..+..|+.++ |-..++...|+| ..|+ ||+..|+|...+|...+...- .-|.. +...|||||
T Consensus 243 ~N--lqrlA~LttAl~~~p~n~~L~y~~m~D--kvhq------PyRa~LIPGl~~il~~~~p~t-~pGl~-GiclSGAGP 310 (355)
T KOG1537|consen 243 WN--LQRLAALTTALLEGPDNVMLGYALMSD--KVHQ------PYRAPLIPGLEAILKAALPAT-YPGLF-GICLSGAGP 310 (355)
T ss_pred ec--HHHHHHHHHHHhcCCCchhhhhhhhhc--cccC------ccccccCccHHHHHHhhCccc-CCcee-eEEecCCCC
Confidence 44 78999999999998 777777777775 6887 667789999999888876521 23777 556789999
Q ss_pred eeEEEecCcchHHHHHHHHHhhCCC
Q 017031 272 NAVLIARNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 272 ~v~~i~~~~~~~~~v~~~l~~~f~~ 296 (378)
|+.++.. ++-++ +-+.+.+.|-.
T Consensus 311 T~lAlat-enf~e-I~~~mv~~F~K 333 (355)
T KOG1537|consen 311 TALALAT-ENFQE-IGEKMVEAFWK 333 (355)
T ss_pred eeEEEec-CcHHH-HHHHHHHHHHh
Confidence 9999997 55565 77777777643
No 48
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.35 E-value=1.4e-10 Score=110.61 Aligned_cols=210 Identities=18% Similarity=0.116 Sum_probs=129.5
Q ss_pred ceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--------C--cchhccccCeEEEecccC
Q 017031 69 HLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS--------G--SACRSLFGGFVKWILGKE 138 (378)
Q Consensus 69 ~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs--------G--sa~rsl~GG~v~~~~g~~ 138 (378)
.++|.+..++|.+.|||||||..+|++-|++.+-|..+++.+|++.|...+ | +-=.+.||||=..+-..
T Consensus 89 ~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFnfMEf~~- 167 (333)
T COG2605 89 PIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFNFMEFRG- 167 (333)
T ss_pred ceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhCCceEEEEcC-
Confidence 389999999999999999999999999999999999999999999996543 2 44457899996543322
Q ss_pred CCCCCceEEEccCCCCC--CCceEEEEEECCCCCccCchhhhhhhhccchhHH-HHHhh--hchHhHHHHHHHHHcCCHH
Q 017031 139 GNGSDSLAVQLVDEEHW--NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQ-HRAKE--VVPKRIVQMEEAIQNHDFS 213 (378)
Q Consensus 139 ~dg~ds~~~~i~~~~~w--p~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~-~~i~~--~~~~~~~~l~~Ai~~~D~~ 213 (378)
|+ +.+..++.. ..| .+++.-++++-......||...+. -+....--+ +..+. ...+...+|..++..+|+.
T Consensus 168 -~~-~V~v~pL~i-~~e~~~Ele~~~lL~yTGi~R~Ss~V~~d-Q~~~~~~~~~~~~e~~~~mk~~A~~~~~al~~nd~~ 243 (333)
T COG2605 168 -NG-EVVVNPLRI-NRERTAELEARLLLYYTGITRQSSEVIED-QVRNVVDGDEETLEALHEMKALAYEMKDALVRNDIP 243 (333)
T ss_pred -CC-cEEEeeccc-chhHHHHHHhceEEEEeccccchhHHHHH-HHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 22 133344432 222 234322222233333444432222 121111100 01111 1355678899999999999
Q ss_pred HHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEE--EecCcchHHHHHHHHH
Q 017031 214 SFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL--IARNRKIATELLQRLL 291 (378)
Q Consensus 214 ~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~--i~~~~~~~~~v~~~l~ 291 (378)
.|++++.+ .++.....-. ..-|| .|+.+.+...+.|++ ++=++|||..-|+ +|+..+..+ +.+.|.
T Consensus 244 ~f~~~l~~-gW~~KK~ls~-----~ISN~----~IDriy~~A~~~GA~-~gKl~GaG~gGFllf~~~p~k~~~-l~r~l~ 311 (333)
T COG2605 244 EFGQILDR-GWEAKKKLSS-----RISND----AIDRIYELALKNGAY-GGKLSGAGGGGFLLFFCDPSKRNE-LARALE 311 (333)
T ss_pred HHHHHHHh-HHHhhhhhcc-----CcCcH----HHHHHHHHHHhcCch-hceeeccCCccEEEEEeCccchHH-HHHHHH
Confidence 99998744 3444443221 23344 555555545557998 5555799999555 456666565 777777
Q ss_pred hhCC
Q 017031 292 FFFP 295 (378)
Q Consensus 292 ~~f~ 295 (378)
+.-.
T Consensus 312 ~~~~ 315 (333)
T COG2605 312 KEQG 315 (333)
T ss_pred HhcC
Confidence 6543
No 49
>PLN02865 galactokinase
Probab=99.32 E-value=5.6e-10 Score=113.70 Aligned_cols=213 Identities=14% Similarity=0.046 Sum_probs=129.3
Q ss_pred cceEEEEecCC-CCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--------C--cc---hhccccCeEEE
Q 017031 68 LHLHIASFNNF-PTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS--------G--SA---CRSLFGGFVKW 133 (378)
Q Consensus 68 ~~v~I~s~nni-P~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs--------G--sa---~rsl~GG~v~~ 133 (378)
.++.+.+..++ |.++||+||||..+|++.|++++++++++.+++.++|.+.+ | |- ..+-.|+++..
T Consensus 129 ~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~i 208 (423)
T PLN02865 129 QGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFM 208 (423)
T ss_pred CceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEE
Confidence 58999999999 68999999999999999999999999999999999996553 3 22 23677788766
Q ss_pred ecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCc---h---------hhhhhhh------------cc---c-
Q 017031 134 ILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSS---T---------TGMRESV------------ET---S- 185 (378)
Q Consensus 134 ~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsS---t---------~~m~~~~------------~t---s- 185 (378)
+.... +...++++.+.+-+.-.+.++++....++..+ . .+.+.+. .. .
T Consensus 209 Df~~l----~~~~vpl~~~~~~~~~~~~ivv~~s~~~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~~~~~Lr~~~~~~ 284 (423)
T PLN02865 209 DCKTL----DHKLVSLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAARFLLEASGNDELEPLLCNVEPEV 284 (423)
T ss_pred EccCC----CcceeecCcccccCCCCeEEEEEeCCCchhhcccchhhHHHHHHHHHHHHHHHhcCCccchhhhhcCCHHH
Confidence 54221 11123333111100011223333332222211 1 1111110 00 0
Q ss_pred ---------hhHHHHHhhhc--hHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHH
Q 017031 186 ---------LLLQHRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERW 254 (378)
Q Consensus 186 ---------~~~~~~i~~~~--~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~ 254 (378)
+....|..+++ ..|+.+..++++++|++.|+++| ++.|.-+.+.|- --.++...+++...+
T Consensus 285 ~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm----~~sh~Slrd~ye---vS~~eld~lv~~a~~- 356 (423)
T PLN02865 285 YEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLI----SASGLSSIENYE---CGCEPLIQLYEILLK- 356 (423)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH----HHhhhhHHhhcc---CCcHHHHHHHHHHHh-
Confidence 11112333332 45789999999999999999998 457777665432 113344444444443
Q ss_pred HHhcCCCeEEEEeCC--CceeEEEecCcchHHHHHHHHHhhCCC
Q 017031 255 NRSVGSPQVAYTFDA--GPNAVLIARNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 255 ~~~~G~~~~a~tsgA--GP~v~~i~~~~~~~~~v~~~l~~~f~~ 296 (378)
..|++++ =++|+ |..++++++++..++ +.+.+.+.|..
T Consensus 357 --~~Ga~Ga-R~tGgGfGGc~vaLv~~~~~~~-~~~~v~~~Y~~ 396 (423)
T PLN02865 357 --APGVYGA-RFSGAGFRGCCVAFVDAEMAEE-AASFVRDEYEK 396 (423)
T ss_pred --cCCCeEE-EEeccCCccEEEEEEchhHHHH-HHHHHHHHHHh
Confidence 2477744 44455 566888888877777 88888877654
No 50
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.24 E-value=7.6e-12 Score=95.22 Aligned_cols=59 Identities=34% Similarity=0.497 Sum_probs=53.7
Q ss_pred EEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc---C-----cchhccccC
Q 017031 71 HIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS---G-----SACRSLFGG 129 (378)
Q Consensus 71 ~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs---G-----sa~rsl~GG 129 (378)
+|+++++||.++|||||||.++|++.|++++++++++++||.++|++++ | +.+.|+|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~g~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPSGIDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSHSHHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCChhhHHHHHhCc
Confidence 5889999999999999999999999999999999999999999998765 2 457899997
No 51
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.22 E-value=1.4e-09 Score=111.37 Aligned_cols=232 Identities=16% Similarity=0.135 Sum_probs=132.5
Q ss_pred cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCC------------------C-------CcccCccch
Q 017031 34 GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF------------------P-------TAAGLASSA 88 (378)
Q Consensus 34 ~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nni------------------P-------~aaGLgSSA 88 (378)
++-++..+..+..+...... +...+....++|.++|++ . ...||||||
T Consensus 87 n~fv~~ai~~~~~y~~~~~~-------~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSA 159 (454)
T TIGR01219 87 NPFIQYAIAAVHLYFDKESL-------HKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSA 159 (454)
T ss_pred ChHHHHHHHHHHHHHHhccc-------cccccCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHH
Confidence 56677888777776654210 001133567788888862 1 258999999
Q ss_pred HHHHHHHHHHHHHhCCCC-------------CHHHHHHHHH------hc---cC-cchhccccCeEEEecccCC------
Q 017031 89 AGFACLVFSLAKLMNLKE-------------NQSQLSAIAR------QG---SG-SACRSLFGGFVKWILGKEG------ 139 (378)
Q Consensus 89 A~aAAlv~Al~~l~~l~l-------------s~~eLs~lAr------~g---sG-sa~rsl~GG~v~~~~g~~~------ 139 (378)
|..+|++.||..+|+..+ +.+++.++|. +| || |.+.|.|||+ ++.+..+.
T Consensus 160 AvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGgi-~Y~rfd~~~l~~~~ 238 (454)
T TIGR01219 160 AMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQ-RYRRFSPELISFLQ 238 (454)
T ss_pred HHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCce-EEEecChhhhhhhh
Confidence 999999999999999887 6788888884 34 43 5788999995 44432110
Q ss_pred --CC---------------CCceEEEccCCCCCC-CceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHH
Q 017031 140 --NG---------------SDSLAVQLVDEEHWN-DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIV 201 (378)
Q Consensus 140 --dg---------------~ds~~~~i~~~~~wp-~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~ 201 (378)
-+ ++...+++. +| .+++++. .. +.-++|..|-..+. ..++...+. ....++
T Consensus 239 ~~~~~~~~~~~L~~~v~~~W~~~i~~l~----lP~~l~Llvg--dt--g~~ssT~~lV~~V~--~~~~~~p~~-s~~i~~ 307 (454)
T TIGR01219 239 VAITGLPLNEVLGTIVKGKWDNKRTEFS----LPPLMNLFMG--DP--GGGSSTPSMVGKVK--KWQMSDPEE-SRENWQ 307 (454)
T ss_pred ccccccchhhhHHHHhccCCCCceeecc----CCCCCEEEEE--cC--CCCcCcHHHHHHHH--HHHHHCHHH-HHHHHH
Confidence 00 000111221 22 3454332 22 23466777755442 111111111 122222
Q ss_pred HHHHH----------------------------HHcC--------CHHHHHHHHHhchhhhhhhcccCCCCccccCchHH
Q 017031 202 QMEEA----------------------------IQNH--------DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSH 245 (378)
Q Consensus 202 ~l~~A----------------------------i~~~--------D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~ 245 (378)
.|..+ +..+ |+..+.+.+.+....|..+.-.+ +.-+-.+...
T Consensus 308 ~l~~aN~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~s--gv~IEp~~~t 385 (454)
T TIGR01219 308 NLSDANLELETKLNDLSKLAKDHWDVYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEA--SVDIEPESQT 385 (454)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccchhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhc--CCcccCHHHH
Confidence 22222 4444 77777777777666676554322 3345566777
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCce--eEEEecCcch-HHHHHHHH
Q 017031 246 RIISYVERWNRSVGSPQVAYTFDAGPN--AVLIARNRKI-ATELLQRL 290 (378)
Q Consensus 246 ~ii~~v~~~~~~~G~~~~a~tsgAGP~--v~~i~~~~~~-~~~v~~~l 290 (378)
++++...++ .|+. ++..+|||-- +++|+.++.. .+++.+.|
T Consensus 386 ~Lld~~~~~---~Gvl-~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W 429 (454)
T TIGR01219 386 QLLDSTMSL---EGVL-LAGVPGAGGFDAIFAITLGDVDSGTKLTQAW 429 (454)
T ss_pred HHHHHHhhc---CCee-EeecCCCCccceEEEEecCChHHHHHHHHHH
Confidence 777777764 4665 5778899876 5666655432 23255555
No 52
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=99.21 E-value=1.2e-09 Score=103.66 Aligned_cols=210 Identities=17% Similarity=0.176 Sum_probs=132.5
Q ss_pred eeEEEEecCCCCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccCccch
Q 017031 9 IPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSA 88 (378)
Q Consensus 9 ~~~t~v~~~~~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLgSSA 88 (378)
+++++|.... ...+++||++.+. +-+.+|++.+. ..++.|+++..+|+++|+|-|+
T Consensus 38 gv~v~v~~~~-~~~v~~Ng~~~d~--~~~~~v~e~L~---------------------~~~~~v~~~~~~P~G~G~G~Sg 93 (283)
T COG1829 38 GVTVEVRFGE-GTGVRLNGKKIDL--PITRKVIEKLG---------------------PDGVGVRIESPVPLGCGYGVSG 93 (283)
T ss_pred ceeEEEEecC-CceEEECCeeccc--hhHHHHHHHhC---------------------ccCcceEEEecCCCCcccchhH
Confidence 4555565543 3679999987654 33445655432 2346788888999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hccCcchhccccCeEEEec-ccCCCCCCceEEEccCCCCCCCceE
Q 017031 89 AGFACLVFSLAKLMNLKENQSQLSAIAR-------QGSGSACRSLFGGFVKWIL-GKEGNGSDSLAVQLVDEEHWNDLVI 160 (378)
Q Consensus 89 A~aAAlv~Al~~l~~l~ls~~eLs~lAr-------~gsGsa~rsl~GG~v~~~~-g~~~dg~ds~~~~i~~~~~wp~l~~ 160 (378)
+++.+.+.|+|..++++ .++..++|+ .|-||+....+||+|+..+ |.+ .....++|+ ||.+++
T Consensus 94 a~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~gtGLGDVvAq~~GGlViR~~pG~P---g~~~vd~Ip----~~~~~V 164 (283)
T COG1829 94 AGALGTALALAEELGLG--EESAARIAHVAEVENGTGLGDVVAQYTGGLVIRVKPGGP---GEGEVDRIP----VPGLRV 164 (283)
T ss_pred HHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcCCCchHHHHHhcCcEEEEecCCCC---CeEEEEEee----cCCceE
Confidence 99999999999998876 677888884 3457999999999987532 221 112355664 455666
Q ss_pred EEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCcccc
Q 017031 161 IIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYM 240 (378)
Q Consensus 161 vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl 240 (378)
+...+ . +++|++.. ++.. ++.+...-...+.+-+++-+++.|.+.+. +|-.-. -.+
T Consensus 165 ~~~~~--g--~l~T~~vi-----~~~~----~~~i~~~g~~~l~ellk~Ptle~f~~~a~----~FA~~~-------Gl~ 220 (283)
T COG1829 165 ITISL--G--ELSTKSVI-----TDEV----VRKINEAGKRALAELLKNPTLENFMEEAR----EFARRT-------GLM 220 (283)
T ss_pred EEEEc--c--cccHHHhh-----hhHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHH----HHHHHh-------CcC
Confidence 55433 2 34443331 1211 12222445566777788999999998763 344321 112
Q ss_pred CchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCc
Q 017031 241 NDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNR 280 (378)
Q Consensus 241 ~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~ 280 (378)
+.++.+.+++.-. .|.. .+++.--|=+||++.++.
T Consensus 221 ---~~~v~~~~~~~~~-~g~l-~as~~mlg~tVFa~~~~~ 255 (283)
T COG1829 221 ---SEEVKEAAEALHS-VGGL-GASMAMLGVTVFALSPEA 255 (283)
T ss_pred ---HHHHHHHHHHhhh-cCch-hHhHHhhCcEEEEecccc
Confidence 3444444444322 3444 456667899999998444
No 53
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.09 E-value=3.8e-09 Score=102.91 Aligned_cols=198 Identities=19% Similarity=0.236 Sum_probs=120.5
Q ss_pred eEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCH-----------HHHHHHHHhc--------cC-cchhccccC
Q 017031 70 LHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQ-----------SQLSAIARQG--------SG-SACRSLFGG 129 (378)
Q Consensus 70 v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~-----------~eLs~lAr~g--------sG-sa~rsl~GG 129 (378)
+.|.+.+..|.++|||||||-.+|++.|+..++|+--.+ .-+.+.|-+| || |.+-|.|||
T Consensus 132 ~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiDnaV~t~Gg 211 (397)
T KOG1511|consen 132 LTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGIDNAVCTYGG 211 (397)
T ss_pred eEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcccchhhhccCc
Confidence 678888899999999999999999999999988864222 3356777776 34 567899999
Q ss_pred eEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhcc-chhH----HHHHhhhchHhHHHHH
Q 017031 130 FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVET-SLLL----QHRAKEVVPKRIVQME 204 (378)
Q Consensus 130 ~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~t-s~~~----~~~i~~~~~~~~~~l~ 204 (378)
...+..|.. .+.+ .+.|.+++++ ++.. -. -+|+.+.+.+.. -.-+ +..++. +.+...+..
T Consensus 212 ~i~f~kg~~-------~~~L---k~~~~L~ill--tnTr-v~-RnTk~lVa~Vr~~~~kfPevi~~i~~a-id~is~ea~ 276 (397)
T KOG1511|consen 212 LISFKKGVE-------IESL---KHLPPLRILL--TNTR-VP-RNTKALVAGVRELLEKFPEVIKAIFDA-IDEISLEAV 276 (397)
T ss_pred eEEeecCcc-------ceec---ccCCCceEEE--Eccc-cC-ccHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHH
Confidence 998887731 2233 3457777653 4432 22 245554333311 1111 222222 344445555
Q ss_pred HHHH----cCCHH---HHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEe
Q 017031 205 EAIQ----NHDFS---SFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIA 277 (378)
Q Consensus 205 ~Ai~----~~D~~---~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~ 277 (378)
..++ +.+.. .+.+++..|...|.++.+.. |..+.++.... +.|.. ...| |||-.-++|+
T Consensus 277 ~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~alGVsH--------~~le~v~~~t~----k~gi~-sKLT-GAGgGGc~it 342 (397)
T KOG1511|consen 277 WILQRENDEFSSPKEQKLEELIRINQDLLDALGVSH--------PSLELVCTTTR----KLGIH-SKLT-GAGGGGCVIT 342 (397)
T ss_pred HHHhcccccCCCcHHHHHHHHHHHhHHHHHHhCCCc--------HHHHHHHHHHH----HhCcc-eecc-cCCCCceEEE
Confidence 5565 23333 58888888878888887742 23344444443 45765 5666 8888755554
Q ss_pred c-CcchHHHHHHHHHhhCCC
Q 017031 278 R-NRKIATELLQRLLFFFPP 296 (378)
Q Consensus 278 ~-~~~~~~~v~~~l~~~f~~ 296 (378)
. ..+..++.++.+++.+..
T Consensus 343 lL~~~~~qe~i~~~ke~L~s 362 (397)
T KOG1511|consen 343 LLKPGTEQEQIDKWKEELES 362 (397)
T ss_pred EECCCCchHHHHHHHHHHHh
Confidence 3 333333377777766543
No 54
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.90 E-value=1.8e-07 Score=87.83 Aligned_cols=187 Identities=17% Similarity=0.143 Sum_probs=119.2
Q ss_pred ccccceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCc
Q 017031 65 WQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 144 (378)
Q Consensus 65 ~~~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds 144 (378)
+...+..+.+.++||.+.|||||+|+.+|+++|+++.||..++..++.+++...+-+- .-+|-+.++++.-+ |+
T Consensus 79 ~~~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEPtD-siiF~~~tlFd~r~---g~-- 152 (293)
T COG4542 79 LINTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPTD-SIIFDKATLFDQRE---GR-- 152 (293)
T ss_pred eecCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCCcc-ceecccceeehhcc---ch--
Confidence 3456789999999999999999999999999999999999999999999999887332 23677777765322 11
Q ss_pred eEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchh
Q 017031 145 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSN 224 (378)
Q Consensus 145 ~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn 224 (378)
+ +......|.+.+ +++.. +.+--|..+++-.....+.....+ .....+...+|+.-+|...+|+.+.. |-
T Consensus 153 ~---~~~~g~~PpL~i--lv~e~--~~~v~T~~y~q~~r~e~~~~~~~e--~~~l~~~v~~A~~~~~~~~lG~AAT~-SA 222 (293)
T COG4542 153 V---IEFLGEMPPLHI--LVFEG--KGTVETVDYNQPPRGEKLLAPLAE--LGNLINLVEKALKVGDPKLLGEAATL-SA 222 (293)
T ss_pred H---HHhcCCCCceEE--EEEcC--CCceeeeeccCCchhhhhhhhHHH--HHHHHHHHHHHHccCCHHHHHHHHHH-HH
Confidence 1 111122355544 44433 233233333321111122222222 25677888899999999999998843 33
Q ss_pred hhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCc
Q 017031 225 QFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNR 280 (378)
Q Consensus 225 ~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~ 280 (378)
..|+.-+ | .|...++.+.+++. +++ +...+=+|.-+-++++..
T Consensus 223 v~~Q~~L---P-----K~~~~~lL~l~e~~----~~~-Gv~VAHSGtmlGli~D~~ 265 (293)
T COG4542 223 VKNQDRL---P-----KPGLNELLRLVEET----CAI-GVIVAHSGTMLGLIYDRK 265 (293)
T ss_pred Hhhcccc---C-----chhHHHHHHHHHHh----ccc-ceEEeccCceEEeeeccc
Confidence 4444433 2 23455677777764 333 333356888777777655
No 55
>PTZ00290 galactokinase; Provisional
Probab=98.89 E-value=5.4e-07 Score=93.00 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=33.8
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhC
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMN 103 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~ 103 (378)
.++.+.+..++|.++||+||||.-+|++.|++++++
T Consensus 133 ~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~ 168 (468)
T PTZ00290 133 QGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVT 168 (468)
T ss_pred CCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999999999999999974
No 56
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=98.79 E-value=1e-08 Score=80.72 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=58.8
Q ss_pred HHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCC--CceeEEEecCc
Q 017031 203 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDA--GPNAVLIARNR 280 (378)
Q Consensus 203 l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgA--GP~v~~i~~~~ 280 (378)
|++||.++|++.|++++..+.+. .... +...++|...++++.+++ .|+. ++.+||| ||++|++++++
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~--~~~~----~~~~~~~~i~~~~~~~~~----~Ga~-~~~~sGsG~G~~v~~l~~~~ 69 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQEN--EPEN----YREVLTPEIDELKEAAEE----NGAL-GAKMSGSGGGPTVFALCKDE 69 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--HHHH----HTTHHHHHHHHHHHHHHH----TTES-EEEEETTSSSSEEEEEESSH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhh--cchH----HHHHcCHHHHHHHHHHHH----CCCC-ceecCCCCCCCeEEEEECCH
Confidence 68999999999999998654322 1100 223445555555555543 6876 7888999 99999999666
Q ss_pred chHHHHHHHHHhhCC
Q 017031 281 KIATELLQRLLFFFP 295 (378)
Q Consensus 281 ~~~~~v~~~l~~~f~ 295 (378)
+..+++.+.|++.|+
T Consensus 70 ~~~~~v~~~l~~~~~ 84 (85)
T PF08544_consen 70 DDAERVAEALREHYK 84 (85)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhCC
Confidence 665569999998875
No 57
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=95.58 E-value=0.35 Score=50.25 Aligned_cols=214 Identities=11% Similarity=0.166 Sum_probs=107.6
Q ss_pred ccceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHH-----------HHHHHHhccC--cchhccccCeEEE
Q 017031 67 KLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQ-----------LSAIARQGSG--SACRSLFGGFVKW 133 (378)
Q Consensus 67 ~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~e-----------Ls~lAr~gsG--sa~rsl~GG~v~~ 133 (378)
..+++|...++.|.++|||.|+-.+...++|+.++-+.-...+. +-++...|.| +-|..+|-|.-.-
T Consensus 689 ~~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~g 768 (948)
T KOG4644|consen 689 CCGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKKG 768 (948)
T ss_pred cCceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhhc
Confidence 45899999999999999999988877777888877775433221 3334445666 6788888887320
Q ss_pred -ecccCCCCCCceEEEccCCCCCCC-ceEEEEEECCCCCccCchhhhhhhhccchhHH---HHHhhh--chHhHHHHHHH
Q 017031 134 -ILGKEGNGSDSLAVQLVDEEHWND-LVIIIAVVSSRQKETSSTTGMRESVETSLLLQ---HRAKEV--VPKRIVQMEEA 206 (378)
Q Consensus 134 -~~g~~~dg~ds~~~~i~~~~~wp~-l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~---~~i~~~--~~~~~~~l~~A 206 (378)
...+.. .....++|..+..+.+ +.--.++|-.. |+.-.+.-.|..+. .+|. +..++. ..+..++..+.
T Consensus 769 r~rael~--~~ie~eeiTipe~f~ekL~dhLLLVYTG-KTRLAkNLLQdViR--n~far~~a~~Q~ah~l~~~tdecAeg 843 (948)
T KOG4644|consen 769 RCRAELN--HGIEHEEITIPEEFREKLEDHLLLVYTG-KTRLAKNLLQDVIR--NFFARCKATKQKAHKLAEATDECAEG 843 (948)
T ss_pred cchhhcc--CCceeeeecCCHHHHHHHhhcEEEEEeC-chHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 000000 1112334433322211 21112222222 22222222222211 1121 111111 13345677778
Q ss_pred HHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEec--CcchHH
Q 017031 207 IQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIAR--NRKIAT 284 (378)
Q Consensus 207 i~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~--~~~~~~ 284 (378)
++++..+.+++..+.- +.+--+- -|++-.+ ..+++++.+... ..|.. ....|||-.-|+|.. +....+
T Consensus 844 f~kGsl~LlgecL~~Y---weqKk~M-apgCEPl--~Vr~lldmLaph--~hges--gw~AGAGGGGFiYLl~kEpqqke 913 (948)
T KOG4644|consen 844 FEKGSLELLGECLEHY---WEQKKFM-APGCEPL--NVRELLDMLAPH--KHGES--GWAAGAGGGGFIYLLIKEPQQKE 913 (948)
T ss_pred HhcCcHHHHHHHHHHH---HHhhhcc-CCCCCCC--cHHHHHHHhccc--ccccc--chhccCCCCcEEEEEecCCCCHH
Confidence 8999999999987432 1111110 1334333 356677766542 34543 333578877666554 333333
Q ss_pred HHHHHHHhhCCCCCC
Q 017031 285 ELLQRLLFFFPPNSE 299 (378)
Q Consensus 285 ~v~~~l~~~f~~~~~ 299 (378)
.+..+++.+++
T Consensus 914 ----aiEa~Lak~eg 924 (948)
T KOG4644|consen 914 ----AIEAFLAKNEG 924 (948)
T ss_pred ----HHHHhhccCCC
Confidence 34444555443
No 58
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=93.21 E-value=0.11 Score=50.20 Aligned_cols=52 Identities=29% Similarity=0.442 Sum_probs=36.5
Q ss_pred cccCccchHHHHHHH--HHHHHHhCCCCCH-HHHHHHH------Hh---ccC-cchhccccCeEE
Q 017031 81 AAGLASSAAGFACLV--FSLAKLMNLKENQ-SQLSAIA------RQ---GSG-SACRSLFGGFVK 132 (378)
Q Consensus 81 aaGLgSSAA~aAAlv--~Al~~l~~l~ls~-~eLs~lA------r~---gsG-sa~rsl~GG~v~ 132 (378)
--||||||+.+..++ ..|....+.+++. .|+-++| +| ||| +++.++||+.+.
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGsiiy 171 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGSIIY 171 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccchhhHhhhcceEE
Confidence 479999999999988 3333334556665 5666666 23 355 678999999975
No 59
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=74.88 E-value=4.2 Score=42.26 Aligned_cols=48 Identities=29% Similarity=0.354 Sum_probs=37.7
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHh-CCC--CCHHHHHHHH
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLM-NLK--ENQSQLSAIA 115 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~-~l~--ls~~eLs~lA 115 (378)
-++.|...-++|++.||.|||+-..+...|..++. |-+ .+..++..+-
T Consensus 141 vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~ 191 (489)
T KOG0631|consen 141 VGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATIT 191 (489)
T ss_pred cceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcce
Confidence 48899999999999999999776666666666665 776 6677777766
No 60
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=61.86 E-value=9.6 Score=38.02 Aligned_cols=51 Identities=29% Similarity=0.367 Sum_probs=32.8
Q ss_pred ccCccchHHHHHHHHHHHHHhCC---C-------CCH---H---HHHHHHH------hccC-cchhccccCeEE
Q 017031 82 AGLASSAAGFACLVFSLAKLMNL---K-------ENQ---S---QLSAIAR------QGSG-SACRSLFGGFVK 132 (378)
Q Consensus 82 aGLgSSAA~aAAlv~Al~~l~~l---~-------ls~---~---eLs~lAr------~gsG-sa~rsl~GG~v~ 132 (378)
-||||||+..-+++.++..-++. + ++. + .|+++|. .||| +++.+.||....
T Consensus 153 TGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS~rY 226 (459)
T KOG4519|consen 153 TGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQRY 226 (459)
T ss_pred cCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccceee
Confidence 69999999999999776555531 1 221 2 2334442 3466 677888888754
No 61
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=40.20 E-value=48 Score=24.48 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=24.8
Q ss_pred eEEECCeecccC-cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCc
Q 017031 22 VLALTKIEISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA 81 (378)
Q Consensus 22 ~i~lnG~~~~~~-~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~a 81 (378)
+|++||++.+.. ... |..+|+... ....|.+.|.||+-
T Consensus 2 ~I~vN~k~~~~~~~~t----l~~lr~~~k------------------~~~DI~I~NGF~~~ 40 (57)
T PF14453_consen 2 KIKVNEKEIETEENTT----LFELRKESK------------------PDADIVILNGFPTK 40 (57)
T ss_pred EEEECCEEEEcCCCcC----HHHHHHhhC------------------CCCCEEEEcCcccC
Confidence 478999987664 222 455665443 24458899999874
No 62
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=34.73 E-value=94 Score=32.61 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=40.4
Q ss_pred HHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCC--ceeEEEecCcchHHHHHHH
Q 017031 212 FSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQR 289 (378)
Q Consensus 212 ~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAG--P~v~~i~~~~~~~~~v~~~ 289 (378)
+..|+++|+ .-|.-|...|.- -.|+..++.+... +.|..+ +-+.||| ...+.+++..+.+. +.+.
T Consensus 387 ~~~~g~Lmn----eS~~Sc~~~yEc---scpel~qL~kial----a~g~~g-aRlTGaGwGGc~v~lvp~d~~~~-~~~~ 453 (489)
T KOG0631|consen 387 LADFGRLMN----ESHRSCDVLYEC---SCPELDQLCKIAL----ANGGVG-ARLTGAGWGGCTVALVPADLVDF-AVAA 453 (489)
T ss_pred HHHHHHHhh----hhhHHHHHHHhc---CCHhHHHHHHHHH----hcCCcc-ceeeccccccceeeeccccchHH-HHHh
Confidence 556788874 456666544331 1234444444443 456653 4444555 44666677666666 7777
Q ss_pred HHhhCCCC
Q 017031 290 LLFFFPPN 297 (378)
Q Consensus 290 l~~~f~~~ 297 (378)
+++.|.+.
T Consensus 454 ~~~~~Y~k 461 (489)
T KOG0631|consen 454 LKEIYYEK 461 (489)
T ss_pred hhhhhhcc
Confidence 77666543
No 63
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=31.53 E-value=68 Score=29.29 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 017031 89 AGFACLVFSLAKLMNLKENQSQLSAIARQGS 119 (378)
Q Consensus 89 A~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs 119 (378)
-++++++.++++++|++++.++|.+-|.+..
T Consensus 128 ~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie 158 (188)
T TIGR00162 128 KAAKAVLEVLCKMLSLEVSVEALEERAKEME 158 (188)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999999886553
No 64
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=29.08 E-value=71 Score=23.83 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 017031 87 SAAGFACLVFSLAKLMNLKENQSQLSAIA 115 (378)
Q Consensus 87 SAA~aAAlv~Al~~l~~l~ls~~eLs~lA 115 (378)
-.+.+||.++...++.+.+.+..|+++.+
T Consensus 36 ~~~iaAA~iY~acr~~~~~~t~~eIa~~~ 64 (71)
T PF00382_consen 36 PESIAAACIYLACRLNGVPRTLKEIAEAA 64 (71)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCcCHHHHHHHh
Confidence 35677888888899999999999998876
No 65
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=24.04 E-value=1.1e+02 Score=29.04 Aligned_cols=29 Identities=28% Similarity=0.186 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 017031 90 GFACLVFSLAKLMNLKENQSQLSAIARQG 118 (378)
Q Consensus 90 ~aAAlv~Al~~l~~l~ls~~eLs~lAr~g 118 (378)
++++++.+|++++|++++.++|.+-|.+.
T Consensus 185 AA~~ll~~l~~l~~~~id~~~L~e~Ae~i 213 (238)
T TIGR00161 185 AAASLVEVLNKMLNTNVDPEPLLKEAEAI 213 (238)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 58889999999999999999998888644
No 66
>PF13134 DUF3948: Protein of unknown function (DUF3948)
Probab=23.00 E-value=71 Score=20.99 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=15.0
Q ss_pred ccCccchHHHHHHHHHHHH
Q 017031 82 AGLASSAAGFACLVFSLAK 100 (378)
Q Consensus 82 aGLgSSAA~aAAlv~Al~~ 100 (378)
-|++|+|+..-|+++-++.
T Consensus 15 lgsasga~~LTafI~fLa~ 33 (35)
T PF13134_consen 15 LGSASGAAVLTAFIVFLAN 33 (35)
T ss_pred hhcccchHHHHHHHHHHHh
Confidence 4888999888888876654
No 67
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=22.71 E-value=56 Score=31.98 Aligned_cols=9 Identities=44% Similarity=0.977 Sum_probs=8.3
Q ss_pred eEEEecCCC
Q 017031 347 YFICTRPGG 355 (378)
Q Consensus 347 ~~i~t~~g~ 355 (378)
|+|+||||.
T Consensus 98 YyIaTKvgR 106 (342)
T KOG1576|consen 98 YYIATKVGR 106 (342)
T ss_pred eeeeeeeee
Confidence 999999985
No 68
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=21.85 E-value=79 Score=33.22 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=35.4
Q ss_pred CCeEEECCeecccC--cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCc---ccCcc
Q 017031 20 PSVLALTKIEISLG--GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA---AGLAS 86 (378)
Q Consensus 20 ~D~i~lnG~~~~~~--~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~a---aGLgS 86 (378)
.++|.|||++.+.+ ++....|.+.+++.......+.... .-+.-..+++-...|+-.+ .|||+
T Consensus 113 rErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF----~fLT~lAF~~F~~enVdvaViEvGlGG 180 (496)
T KOG2525|consen 113 RERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYF----EFLTLLAFHVFVKENVDVAVIEVGLGG 180 (496)
T ss_pred hheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCCCchh----hhhHhhhheeeeecCCcEEEEEecccc
Confidence 68899999997654 3444445565555443311110000 0022235677777777766 78887
No 69
>PTZ00086 40S ribosomal protein S16; Provisional
Probab=20.14 E-value=6e+02 Score=22.35 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=16.9
Q ss_pred eEEEEecCCCCCeEEECCeecccC
Q 017031 10 PITSVLPQPLPSVLALTKIEISLG 33 (378)
Q Consensus 10 ~~t~v~~~~~~D~i~lnG~~~~~~ 33 (378)
+.++|........|.+||++.+..
T Consensus 20 AiArv~l~~G~G~i~INg~~l~~y 43 (147)
T PTZ00086 20 AVAVALVTKGKGLIRVNGVPLDLI 43 (147)
T ss_pred ceEEEEEEcCCceEEECCcCHHHh
Confidence 345566666678899999986443
Done!