Query 017031
Match_columns 378
No_of_seqs 300 out of 1348
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:48:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f0n_A Mevalonate pyrophosphat 100.0 5.5E-72 1.9E-76 559.3 31.1 348 7-377 61-412 (414)
2 2hke_A Diphosphomevalonate dec 100.0 4.8E-56 1.6E-60 444.2 31.6 331 7-370 45-380 (380)
3 1fi4_A Mevalonate 5-diphosphat 100.0 2.4E-56 8.3E-61 451.3 28.6 348 7-377 63-415 (416)
4 3lto_A Mevalonate diphosphate 100.0 2.1E-51 7.3E-56 401.6 26.6 260 4-297 35-311 (323)
5 3qt5_A Mevalonate diphosphate 100.0 9.1E-48 3.1E-52 378.0 28.0 267 7-295 45-314 (332)
6 2gs8_A Mevalonate pyrophosphat 100.0 2E-39 7E-44 315.3 25.4 255 7-292 44-302 (317)
7 1h72_C HK, homoserine kinase; 99.9 1.4E-26 4.7E-31 221.9 22.6 242 9-296 29-283 (296)
8 3hul_A HSK, HK, homoserine kin 99.9 9.7E-26 3.3E-30 218.1 22.9 243 4-295 23-272 (298)
9 3pyf_A 4-diphosphocytidyl-2-C- 99.9 4.5E-25 1.5E-29 214.2 19.3 239 6-293 38-281 (306)
10 2hfs_A Mevalonate kinase, puta 99.9 1.1E-23 3.7E-28 205.1 24.4 258 2-296 37-315 (332)
11 2v8p_A 4-diphosphocytidyl-2-C- 99.9 4.5E-25 1.5E-29 210.0 12.7 221 6-288 37-260 (271)
12 2oi2_A Mevalonate kinase; enzy 99.9 5.6E-23 1.9E-27 196.0 22.0 243 3-295 30-284 (292)
13 1uek_A 4-(cytidine 5'-diphosph 99.9 6.2E-23 2.1E-27 195.3 14.3 225 5-292 32-256 (275)
14 2x7i_A Mevalonate kinase; tran 99.9 1.8E-22 6E-27 194.5 17.6 199 69-295 86-298 (308)
15 1pie_A Galactokinase; galactos 99.9 2.7E-21 9.3E-26 194.7 24.6 223 35-294 122-394 (419)
16 4hac_A Mevalonate kinase; GHMP 99.9 3.1E-21 1E-25 188.1 23.6 195 67-293 95-304 (321)
17 2cz9_A Probable galactokinase; 99.9 9.6E-22 3.3E-26 192.3 19.5 259 2-295 25-330 (350)
18 1kkh_A Mevalonate kinase; mixe 99.9 7.4E-21 2.5E-25 183.9 20.7 193 68-293 98-306 (317)
19 2ww4_A 4-diphosphocytidyl-2C-m 99.9 1E-21 3.4E-26 188.4 12.7 222 5-292 34-263 (283)
20 1wuu_A Galactokinase; galactos 99.9 1.5E-19 5E-24 180.9 25.6 205 68-294 130-379 (399)
21 2pg9_A Phosphomevalonate kinas 99.8 4E-19 1.4E-23 174.3 22.8 258 2-293 28-321 (337)
22 3k85_A D-glycero-D-manno-hepto 99.8 7.5E-20 2.6E-24 180.9 13.1 256 2-293 33-322 (357)
23 3k17_A LIN0012 protein; protei 99.8 7.1E-18 2.4E-22 167.3 24.1 263 2-293 31-342 (365)
24 1kvk_A MK, mevalonate kinase; 99.8 1.5E-17 5.2E-22 165.9 20.9 197 68-294 127-360 (395)
25 3gon_A Phosphomevalonate kinas 99.8 1.3E-16 4.4E-21 154.2 24.4 258 2-293 26-319 (335)
26 2a2c_A N-acetylgalactosamine k 99.7 1.8E-15 6.3E-20 154.9 23.9 205 68-296 148-450 (478)
27 3v2u_C Protein GAL3; rossmann 99.2 3.2E-10 1.1E-14 117.1 19.6 207 68-296 146-491 (520)
28 1z0w_A Putative protease LA ho 26.8 97 0.0033 27.3 5.7 82 9-107 30-114 (207)
29 4hhu_A OR280; engineered prote 24.0 1.8E+02 0.0062 23.6 6.2 42 250-291 61-102 (170)
No 1
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=100.00 E-value=5.5e-72 Score=559.29 Aligned_cols=348 Identities=47% Similarity=0.740 Sum_probs=299.6
Q ss_pred CCeeEEEEecC--CCCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccC
Q 017031 7 PLIPITSVLPQ--PLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 84 (378)
Q Consensus 7 ~~~~~t~v~~~--~~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGL 84 (378)
.++|+|+|..+ +++|++||||++++.+.+|+++||+++|++++..+..+.+. ..|.+..++++|+++|+||+++||
T Consensus 61 ~l~T~TtV~~s~~~~~D~i~LNG~~~~~~~~ri~~~l~~iR~~~~~~~~~~~~~--~~~~~~~~~~~I~~~~~iP~aaGL 138 (414)
T 3f0n_A 61 QLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGD--TLPLSLSYKVHVASVNNFPTAAGL 138 (414)
T ss_dssp TSCEEEEEEECTTCCSCEEEETTEEECTTCHHHHHHHHHHHHHHHC-------C--CHHHHHHSCEEEEEEECCCGGGCC
T ss_pred CceEEEEEEEecCCCceEEEECCEecCcccHHHHHHHHHHHHHhcccccccccc--cccccccCcEEEEEEeCCCCCcCc
Confidence 69999999854 45799999999987678999999999999988643211111 113355689999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEE
Q 017031 85 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAV 164 (378)
Q Consensus 85 gSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilv 164 (378)
|||||++||+++|+|++|++ .+||+++||+|+||+|||+|||||+|..+...++.++++++++++.|||++++++++
T Consensus 139 gSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~sGs~~~s~~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv 215 (414)
T 3f0n_A 139 ASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILV 215 (414)
T ss_dssp CHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHCGGGGGGGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEE
T ss_pred chhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhCCCcchHhhCCEEEEEeccCCCCCceEEEEcccccCCCCceEEEEE
Confidence 99999999999999999998 479999999999999999999999998886667889999999877899999999999
Q ss_pred ECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchH
Q 017031 165 VSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTS 244 (378)
Q Consensus 165 v~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s 244 (378)
+|..+|+++||++|+++++++++|++|+++++..++..|+.||.++||+.|++++|+|+++||++|++++||++||+|.+
T Consensus 216 ~~~~~K~vsST~~mr~~l~ts~~~~~~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s 295 (414)
T 3f0n_A 216 VSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTS 295 (414)
T ss_dssp ESCCC-CCCHHHHHHHHHHHCHHHHHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHH
T ss_pred eCccccCCCchHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccH
Confidence 99999999999999999999999999998645899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCCCCCCCccccccCcchhhhhccCCCccc
Q 017031 245 HRIISYVERWNRSV-GSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKD 323 (378)
Q Consensus 245 ~~ii~~v~~~~~~~-G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (378)
.++++.++++++.. |+. ++|||||||||++|+++++.++ +.+.|++.|++..+|+ .|++|.+
T Consensus 296 ~~ii~~v~~~r~~~~g~~-~~~tsdAGPnv~vl~~~~~~~~-v~~~l~~~f~~~~~~~--~~~~~~~------------- 358 (414)
T 3f0n_A 296 RRIIQLVHRFNTHHGQTK-VAYTFDAGPNAVIFTLEDTVAE-FVAAVRHSFPPAANGD--KFLKGLQ------------- 358 (414)
T ss_dssp HHHHHHHHHHHHHHTSCC-EEEECCSSSCEEEEEEHHHHHH-HHHHHHHHSCCSCC----CCEEESC-------------
T ss_pred HHHHHHHHHHHHhcCCce-EEEEECCCCCEEEEEecccHHH-HHHHHHHhcCCCCCcc--cccccCc-------------
Confidence 99999999997644 676 9999999999999999988887 9999999999877654 3555432
Q ss_pred ccCCCCCcccc-cccccccCCCcceEEEecCCCCceecCCCcccccCCCCCCCCC
Q 017031 324 IEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 377 (378)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~~g~gp~~~~~~~~~l~~~~~g~~~~ 377 (378)
++...+++++. .+..++.+++|+|||||+||+||++++++++||||+ +|+||.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~g~gp~~~~~~~~~l~~~-~g~~~~ 412 (414)
T 3f0n_A 359 VAPVLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVLDDTHDHLLGQ-DGLPQR 412 (414)
T ss_dssp CCCCCCCHHHHHHSCSSCCTTSEEEEEEEEBCCCCEEECCGGGCSBCT-TSSBC-
T ss_pred cccccCChhhhhcccccccCCceeEEEECCCCCCCEECCchhHhcCCC-CCCcCC
Confidence 33344455555 566666899999999999999999999899999995 999985
No 2
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=100.00 E-value=4.8e-56 Score=444.20 Aligned_cols=331 Identities=35% Similarity=0.597 Sum_probs=281.0
Q ss_pred CCeeEEEEecCC--CCCeEEECCeeccc-CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCccc
Q 017031 7 PLIPITSVLPQP--LPSVLALTKIEISL-GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAG 83 (378)
Q Consensus 7 ~~~~~t~v~~~~--~~D~i~lnG~~~~~-~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaG 83 (378)
+++++|+|.... +++++++||++.+. +++++++|++.++++++.. +...+++|+++|+||+++|
T Consensus 45 ~l~~~~~v~~~~~~~~~~i~i~g~~~~~~~~~~v~~~~~~~~~~~~~~-------------~~~~~v~I~~~~~IP~aaG 111 (380)
T 2hke_A 45 PFRSKTSVELRDDIETDTLRLNGTEVDVGKTPRVQSMLLHLRSTCPEE-------------LKNKKVNIVSENNFPTAAG 111 (380)
T ss_dssp SCCEEEEEEEESSCSSCEEEETTEEECGGGCHHHHHHHHHHHTSSCHH-------------HHTCEEEEEEEECSCTTSC
T ss_pred CCceEEEEEECCCCCccEEEECCcccCchhHHHHHHHHHHHHHHhccc-------------CCCCCEEEEEeccCCCccC
Confidence 499999998653 36899999987655 4789999999999876530 0136899999999999999
Q ss_pred CccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEE
Q 017031 84 LASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIA 163 (378)
Q Consensus 84 LgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vil 163 (378)
||||||++||++.|+|++++++ +||+++|++|+||+|||+|||||+|..|...++.+++.+++.++.+||+++++++
T Consensus 112 LGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~Gsva~s~~GG~v~~~~g~~~~~~~~~~~~l~~~~~~p~l~~~vl 188 (380)
T 2hke_A 112 MASSASGYCAMSAALIRAFKST---TNVSMLARLGSGSACRSAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVMCA 188 (380)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHCGGGGGGGSSSEEEEECCSCTTSTTCEEEEEECTTSCTTEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcCcceeeehhCCeEEEecCCCCCCCcceEEeccCcccCCcceEEEE
Confidence 9999999999999999999987 8999999999999999999999999877655666788899987677999998888
Q ss_pred EECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCch
Q 017031 164 VVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDT 243 (378)
Q Consensus 164 vv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~ 243 (378)
+++...+.++||.+|++++++++.+++++.+++..++..|+.||.++||+.|+++++.|+|.||+++++.+|++.|++|.
T Consensus 189 v~~~~~~~~sst~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~ 268 (380)
T 2hke_A 189 VLKGAQKDVSSTKGMQQSLKTSPLMKKRISETVPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATED 268 (380)
T ss_dssp ECCCCSCCCCHHHHHHHHHHHCTTHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHH
T ss_pred EecCCCCCCCCHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHH
Confidence 88877788999999999989999999888754588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC-CCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCCCCCCCccccccCcchhhhhccCCCcc
Q 017031 244 SHRIISYVERWNRSVG-SPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMK 322 (378)
Q Consensus 244 s~~ii~~v~~~~~~~G-~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (378)
+.++++.+++++...| +. +++|||||||+|+|+++++.++ +.+.|++.|+...+ .|..+..++++.
T Consensus 269 ~~~i~~~~~~~~~~~Ga~~-~a~~SGaGPtv~~l~~~~~~~~-v~~~l~~~~~~~~~----~~~~~~~~~~~~------- 335 (380)
T 2hke_A 269 SYAMIRLVKAYNAKKGRTA-LAYTFDAGANCFLFVLKEDLPE-AVAMLMEHFPTPFE----KFFFGDRELLEK------- 335 (380)
T ss_dssp HHHHHHHHHHHHHHHTSCC-EEEECCSSSCEEEEEEGGGHHH-HHHHHHHHSCCCGG----GEEESCHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcCCcc-eEEEECCCCcEEEEECHHHHHH-HHHHHHHhcccccc----cccccchhhhcc-------
Confidence 9999999999865438 55 8999999999999998877665 99999999986522 455566666662
Q ss_pred cccCCCCCcccc-cccccccCCCcceEEEecCCCCceecCCCcccccCC
Q 017031 323 DIEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNP 370 (378)
Q Consensus 323 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~~g~gp~~~~~~~~~l~~~ 370 (378)
+....+|.++. .+. ..+++|+|+|+|+||+||+++ ++++||||+
T Consensus 336 -~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~g~~~~-~~~~~~~~~ 380 (380)
T 2hke_A 336 -VKVVSLPDEYKKLID--HPKKPFEMLLQSPVGCGVKYL-GPSESLIPP 380 (380)
T ss_dssp -HHHCCCCGGGSSCSC--CCCCCCSEEEEEEBCCCCEEE-CGGGCSSCC
T ss_pred -ccccCCChhhhhhhh--ccCCCceEEEEcCCCCCCEec-CchhhccCc
Confidence 22334556665 333 568999999999999999999 578999983
No 3
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=100.00 E-value=2.4e-56 Score=451.31 Aligned_cols=348 Identities=42% Similarity=0.607 Sum_probs=282.1
Q ss_pred CCeeEEEEecCC--CCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccC
Q 017031 7 PLIPITSVLPQP--LPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 84 (378)
Q Consensus 7 ~~~~~t~v~~~~--~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGL 84 (378)
.++++|+|.... +++++++||+..+...+++++|++.+|++++..++.+.. .+.+...+++|+++|+||+++||
T Consensus 63 ~l~~~~~v~~~~~~~~~~i~i~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~gv~I~i~~~IP~~aGL 138 (416)
T 1fi4_A 63 DLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDLRQLRKEMESKDAS----LPTLSQWKLHIVSENNFPTAAGL 138 (416)
T ss_dssp TSCEEEEEEECTTCCSCBCTTTCCBSSSSSSSHHHHHHHHHHHHHHHHTTCTT----SCCGGGSCEEEEEEECCCTTSCC
T ss_pred CCcceEEEEEcCCCCccEEEECCccccccchHHHHHHHHHHHHhccccccccc----cccccCCcEEEEEecCCcCcCCc
Confidence 499999998643 368899999865445789999999999987642211111 12233578999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEE
Q 017031 85 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAV 164 (378)
Q Consensus 85 gSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilv 164 (378)
|||||++||++.|+|++|+++++.+||+++|++|+||+|+|+||||++|..|...++.+++.+++.+..+||++++++++
T Consensus 139 GSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~Gs~~~sl~GG~v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv 218 (416)
T 1fi4_A 139 ASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLV 218 (416)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGGGGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCCchheEeeCCcEEEecCCcCCCCCceeEEecCccCCcccEEEEEE
Confidence 99999999999999999999999999999999999999999999999998775445667788898766679999988888
Q ss_pred ECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchH
Q 017031 165 VSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTS 244 (378)
Q Consensus 165 v~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s 244 (378)
++...+.++||.+|+..+++++.+++++.+++..++..|+.||.++||+.|+++++.|+|.||+++++++|++.|++|.+
T Consensus 219 ~~~~~~~~sst~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~ 298 (416)
T 1fi4_A 219 VSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTS 298 (416)
T ss_dssp ECCCSCCCCHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHH
T ss_pred ECCCCCCcCCHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHH
Confidence 88777889999999998888888888887655889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-CCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCCCCCCCccccccCcchh-hhhccCCCcc
Q 017031 245 HRIISYVERWNRSVG-SPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSI-LRDAGIDGMK 322 (378)
Q Consensus 245 ~~ii~~v~~~~~~~G-~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 322 (378)
.++++.+++++...| +. ++++||||||+|+|+++++.++ +.+.+++.|+....|.. +..+. ++.
T Consensus 299 ~~i~~~~~~~r~~~Ga~~-~a~~SGaGPtv~al~~~~~~~~-v~~~l~~~~~~~~~~~~-----~~~~~~~~~------- 364 (416)
T 1fi4_A 299 KRIISWCHTINQFYGETI-VAYTFDAGPNAVLYYLAENESK-LFAFIYKLFGSVPGWDK-----KFTTEQLEA------- 364 (416)
T ss_dssp HHHHHHHHHHHHHHTSCC-EEEEECSSSCEEEEEEGGGHHH-HHHHHHHHHTTSTTSTT-----TCCHHHHHH-------
T ss_pred HHHHHHHHHHHHhcCCce-EEEEecCCCcEEEEECHHHHHH-HHHHHHHhccccccccc-----ccccccccc-------
Confidence 999999998764347 55 8899999999999998876665 99999999984333422 11112 221
Q ss_pred cccCCCCCcccc-cccccccCCCcceEEEecCCCCceecCCCcccccCCCCCCCCC
Q 017031 323 DIEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 377 (378)
Q Consensus 323 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~~g~gp~~~~~~~~~l~~~~~g~~~~ 377 (378)
+....+|.++. .+..++.+++|+|+|||+||+||+++. +||||+ +|+|+.
T Consensus 365 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~gp~~~~---~~~~~~-~~~~~~ 415 (416)
T 1fi4_A 365 -FNHQFESSNFTARELDLELQKDVARVILTQVGSGPQETN---ESLIDA-KTGLPK 415 (416)
T ss_dssp -HHHHHHTSCCCSSCCCSSGGGGEEEEEEEEBCCCCEECS---CCSSCS-SSCC--
T ss_pred -ccccCCChhhhhhccccccCCCceEEEECCCCCChhhhH---HhccCC-CCCCCC
Confidence 11111234444 344455679999999999999999983 899996 888864
No 4
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=100.00 E-value=2.1e-51 Score=401.58 Aligned_cols=260 Identities=25% Similarity=0.340 Sum_probs=229.9
Q ss_pred cCCCCeeEEEEec-CCCCCeE---EECCe---ecccC-----cchHHHHHHHHHHhcccccccccccccccccccccceE
Q 017031 4 SASPLIPITSVLP-QPLPSVL---ALTKI---EISLG-----GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLH 71 (378)
Q Consensus 4 ~~~~~~~~t~v~~-~~~~D~i---~lnG~---~~~~~-----~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~ 71 (378)
++..++|+|+|.. ++++|++ ||||+ +++.. .+|++++++++| . +.+++
T Consensus 35 tl~~~~t~T~v~~~~~~~d~~~~~~lng~~~~~~~~~~~~~~~~~i~~~l~~~~----~----------------~~gv~ 94 (323)
T 3lto_A 35 TLSNLLSSVKLEKLPTKKDIWEPLTIPGAPEFNLSVEAQKRFIDHLVRLKEYFG----Y----------------VGGFL 94 (323)
T ss_dssp EEEEEEEEEEEEECSSSSCEECCBCTTSSBCCCCCSHHHHHHHHHHHHHHHHHT----C----------------CCCEE
T ss_pred EcCCCeeEEEEEecCCCCCeeeeEEECCEeccccccccchhHHHHHHHHHHHhC----C----------------CCCEE
Confidence 4568999999986 3347999 99999 33322 245666666554 2 46899
Q ss_pred EEEecCCCCcccCccchHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceE
Q 017031 72 IASFNNFPTAAGLASSAAGFACLV----FSLAKLMNLKE-NQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLA 146 (378)
Q Consensus 72 I~s~nniP~aaGLgSSAA~aAAlv----~Al~~l~~l~l-s~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~ 146 (378)
|+++|+||+++|||||||++||++ .|+|++|++++ |++||+++|++|+||+|||+|||||+|..| ++
T Consensus 95 I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gsGsaa~si~GG~v~~~~g--------~~ 166 (323)
T 3lto_A 95 IQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGSGSSCRSFYAPWALWTGD--------KV 166 (323)
T ss_dssp EEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTCGGGGGGGSCSEEEEETT--------EE
T ss_pred EEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCcchhhhCCEEEEecC--------cE
Confidence 999999999999999999999999 99999999999 999999999999999999999999999765 36
Q ss_pred EEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhh
Q 017031 147 VQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQF 226 (378)
Q Consensus 147 ~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~l 226 (378)
+++. .+||++.++++++|+.++.++|+++|+. ++++++++.|+++ +..++..|+.||.++||+.|++++|.|+|.|
T Consensus 167 ~~l~--~~~~~l~~~v~vi~~~~~~vsT~~~~~~-l~~~~~~~~~~~~-~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~L 242 (323)
T 3lto_A 167 SAID--LPYKDLLHQVIVISSQEKEIPSRVAHKL-VKTSPFYETRSER-AEANLKLLLNAFENKDWTSIYQICWHEFLDM 242 (323)
T ss_dssp EECC--CSCCSCEEEEEECCCCTTCCCHHHHHHH-GGGSTTTTTHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred EEcc--CCCCCCeEEEEEECCCCCCCCCHHHHhh-cccChhHHHHHHH-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7774 3589999988888988889999999998 6899999999875 5889999999999999999999999999999
Q ss_pred hhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCCC
Q 017031 227 HAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPN 297 (378)
Q Consensus 227 ha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~~ 297 (378)
|+++++++||+.||+|.+.++++.+++++++.|+. ++||||||||+++++++++.++ +.+.+++.|+..
T Consensus 243 Ha~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~-~~~tsgAGPnv~~l~~~~~~~~-v~~~l~~~~~~~ 311 (323)
T 3lto_A 243 HQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDG-PVVTMDAGPNVHLLYRSDQTDL-ARQFKSDHLVGN 311 (323)
T ss_dssp HHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCC-CEEECCSSSCEEEEECGGGHHH-HHHHHHHHTTTT
T ss_pred hHHHhccCCCceecCchHHHHHHHHHHHHHhCCCe-EEEEECCCCCeEEEEecccHHH-HHHHHHHHhHhH
Confidence 99999999999999999999999999987567887 8999999999999999988877 999999998764
No 5
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=100.00 E-value=9.1e-48 Score=378.00 Aligned_cols=267 Identities=31% Similarity=0.486 Sum_probs=233.0
Q ss_pred CCeeEEEEecCC--CCCeEEECCeecccC-cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCccc
Q 017031 7 PLIPITSVLPQP--LPSVLALTKIEISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAG 83 (378)
Q Consensus 7 ~~~~~t~v~~~~--~~D~i~lnG~~~~~~-~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaG 83 (378)
.++++|+|..+. ++|++++||++.+.+ .+++.+|++.+|+.++. ..+++|+++|+||+++|
T Consensus 45 ~~~~~~~v~~~~~~~~~~~~i~g~~~~~~~~n~v~~~~~~~~~~~~~----------------~~~~~i~~~~~iP~~~G 108 (332)
T 3qt5_A 45 RFYTETKVTFDPDFTEDCLILNGNEVNAKEKEKIQNYMNIVRDLAGN----------------RLHARIESENYVPTAAG 108 (332)
T ss_dssp EEEEEEEEEEETTCSSCEEEETTEECCHHHHHHHHHHHHHHHHHHTC----------------CCEEEEEEEEESCGGGT
T ss_pred CCCCeeEEEEcCCCCccEEEECCccCCcchHHHHHHHHHHHHHhcCC----------------CCCEEEEEecCCCCCCC
Confidence 468899988543 368999999976554 68999999999998764 35899999999999999
Q ss_pred CccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEE
Q 017031 84 LASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIA 163 (378)
Q Consensus 84 LgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vil 163 (378)
||||||+++|++.|++++|+++++.+||+++|+++||++|+|+|||+++|..|. ++.+++++++++...||+++++++
T Consensus 109 LgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~g~~~~~~~GG~~~~~~g~--~~~~~~~~~l~~~~~~~~l~~vv~ 186 (332)
T 3qt5_A 109 LASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSIFGGFAEWEKGH--DDLTSYAHGINSNGWEKDLSMIFV 186 (332)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHCGGGGGGGSCSEEEEECCS--STTTCEEEEECCTTGGGGEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCchhhhcCCeEEEecCC--CCccceeeecccccCCCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999998764 456778888864445788998888
Q ss_pred EECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCch
Q 017031 164 VVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDT 243 (378)
Q Consensus 164 vv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~ 243 (378)
+++...++++||.+|++.+++++.+++++.+ ++.++..|+.||.++|++.|++++++|+++||+++++.+|+++|++|.
T Consensus 187 vp~~~~~~~ss~~~~~~~~~~s~~~~~~v~~-~~~~~~~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~ 265 (332)
T 3qt5_A 187 VINNQSKKVSSRSGMSLTRDTSRFYQYWLDH-VDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQE 265 (332)
T ss_dssp CCCCCCCC--CHHHHHHHHHHCTTHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHH
T ss_pred EEcCCCCCCchHHHHHHhhhcChhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChH
Confidence 7777767889999999988889999999886 477999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCC
Q 017031 244 SHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 295 (378)
Q Consensus 244 s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~ 295 (378)
+.++++.+++++ +.|+. +++|||||||+++++++++.++ +.+.|++.|+
T Consensus 266 ~~~i~~~~~~~~-~~Ga~-~a~~SGaGPtv~~l~~~~~a~~-v~~~l~~~~~ 314 (332)
T 3qt5_A 266 SYDAMAIVEQCR-KANLP-CYFTMDAGPNVKVLVEKKNKQA-VMEQFLKVFD 314 (332)
T ss_dssp HHHHHHHHHHHH-HTTCC-EEEECCSSSCEEEEEEHHHHHH-HHHHHHTTSC
T ss_pred HHHHHHHHHHHH-hCCCc-EEEEeCCCCcEEEEECHHHHHH-HHHHHHHhCC
Confidence 999999999875 47988 8999999999999999776555 8888887654
No 6
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=100.00 E-value=2e-39 Score=315.35 Aligned_cols=255 Identities=25% Similarity=0.364 Sum_probs=209.7
Q ss_pred CCeeEEEEec-CC--CCCeEEECCeecccC-cchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcc
Q 017031 7 PLIPITSVLP-QP--LPSVLALTKIEISLG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 82 (378)
Q Consensus 7 ~~~~~t~v~~-~~--~~D~i~lnG~~~~~~-~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aa 82 (378)
.++++++|.. +. +.+++++||...+.+ .++++++++.++++.+ .+++|+++|+||.++
T Consensus 44 ~l~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~n~v~~~~~~~~~~~~------------------~g~~I~i~~~IP~~~ 105 (317)
T 2gs8_A 44 NMFTTTSVSFLPDTATSDQFYINGILQNDEEHTKISAIIDQFRQPGQ------------------AFVKMETQNNMPTAA 105 (317)
T ss_dssp EEEEEEEEEECCTTCCSCEEEETTEECCHHHHHHHHHHHTTTCCTTC------------------CCEEEEEECCSCGGG
T ss_pred cccceEEEEEEcCCCCeEEEEECCCccccchHHHHHHHHHHHHHhcC------------------CCeEEEEeCCCCCCC
Confidence 5788898886 43 358899999754322 4566666665544321 479999999999999
Q ss_pred cCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEE
Q 017031 83 GLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIII 162 (378)
Q Consensus 83 GLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vi 162 (378)
|||||||+++|++.|+|++|+++++.+||.++|++++|++|+|+|||+++|.. ++.+.+.++++ +++++++
T Consensus 106 GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G~~~~~~~GG~~~~~~----~~~~~~~~~~~-----~~~~~~v 176 (317)
T 2gs8_A 106 GLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSSRSFFGPVAAWDK----DSGAIYKVETD-----LKMAMIM 176 (317)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGGGGSCSEEEECT----TTCCEEECCCC-----CCEEEEE
T ss_pred chHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcchhHhhhcCChheEee----CCCceeEEEcc-----ccccEEE
Confidence 99999999999999999999999999999999999999999999999999864 23344444442 2567777
Q ss_pred EEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCc
Q 017031 163 AVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMND 242 (378)
Q Consensus 163 lvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~ 242 (378)
+++|+..+.++||+++++.+++++.++.++.+ +..++..++.||.++|++.|+++++.|++.||++++.++|++.|+.+
T Consensus 177 ~i~~~~~~~~~tt~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~ 255 (317)
T 2gs8_A 177 LVLNAAKKPISSREGMKLCRDTSTTFDQWVEQ-SAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTK 255 (317)
T ss_dssp EECCCSSCCSCHHHHHHHHHHHCTTHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCH
T ss_pred EEEECCCcCcccHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhH
Confidence 77677667888999999877777777776654 47899999999999999999999989899999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHh
Q 017031 243 TSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLF 292 (378)
Q Consensus 243 ~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~ 292 (378)
.+.++++.+++++. .|+. +++|||||||+|+++++++.++ +.+.+++
T Consensus 256 ~~~~i~~~~~~~~~-~G~~-~~~~SGaGptv~~l~~~~~~~~-v~~~l~~ 302 (317)
T 2gs8_A 256 ESYQAMEAVKELRQ-EGFA-CYFTMDAGPNVKVLCLEKDLAQ-LAERLGK 302 (317)
T ss_dssp HHHHHHHHHHHHHH-TTCC-EEEECCSSSCEEEEEEGGGHHH-HHHHHHT
T ss_pred HHHHHHHHHHHHHh-cCCc-EEEEecCCCeEEEEEcHHHHHH-HHHHHhc
Confidence 99999998888754 6876 8999999999999998776554 7666654
No 7
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.95 E-value=1.4e-26 Score=221.90 Aligned_cols=242 Identities=14% Similarity=0.120 Sum_probs=173.0
Q ss_pred eeEEEEecCCCCCeEEE--CCeeccc--CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccC
Q 017031 9 IPITSVLPQPLPSVLAL--TKIEISL--GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 84 (378)
Q Consensus 9 ~~~t~v~~~~~~D~i~l--nG~~~~~--~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGL 84 (378)
++.+.+.+.. ++++.+ +|.+.+. ..+++.++++.+++.++. ..+++|.++++||+++||
T Consensus 29 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~n~v~~a~~~~~~~~g~----------------~~g~~i~i~~~iP~g~GL 91 (296)
T 1h72_C 29 YDVIEVEAID-DKEIIIEVDDKNIPTDPDKNVAGIVAKKMIDDFNI----------------GKGVKITIKKGVKAGSGL 91 (296)
T ss_dssp EEEEEEEEES-SSSEEEEESCTTSCCCTTTSHHHHHHHHHHHHTTC----------------CCEEEEEEECSSCTTSSS
T ss_pred cEEEEEEecC-CCeEEEEEcCCcCCCCCccCcHHHHHHHHHHHhCC----------------CCCeEEEEEcCCCCCCCc
Confidence 4445555432 344554 6643322 357889999999887654 357999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---------cchhccccCeEEEecccCCCCCCceEEEccCCCCC
Q 017031 85 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---------SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW 155 (378)
Q Consensus 85 gSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsG---------sa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~w 155 (378)
|||||.++|++.|++++|+++++.+||.++|+++++ ++++|+|||++++..+. +...++++.+
T Consensus 92 GSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~ddv~~~~~gg~~~~~~~~-----~~~~~~~~~~--- 163 (296)
T 1h72_C 92 GSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYE-----PLEVLHIPID--- 163 (296)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEEEETT-----TTEEEEECCC---
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCccchHHHHhCCEEEEEeCC-----ceEEEEEcCC---
Confidence 999999999999999999999999999999988766 78899999999874321 2224566432
Q ss_pred CCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCC
Q 017031 156 NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSP 235 (378)
Q Consensus 156 p~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P 235 (378)
++++++ ++.|.. .++|.+.++. ++....+.+++.+ ..++..+++||.++|++.|+++++. |.+|+.+.
T Consensus 164 ~~~~~v-l~~p~~--~~~T~~~~~~-l~~~~~~~~~~~~--~~~~~~~~~al~~~d~~~~~~~~~~--n~~h~~~~---- 231 (296)
T 1h72_C 164 FKLDIL-IAIPNI--SINTKEAREI-LPKAVGLKDLVNN--VGKACGMVYALYNKDKSLFGRYMMS--DKVIEPVR---- 231 (296)
T ss_dssp SCCCEE-EECCSS--CCCHHHHHHT-SCSCCCHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHTT--CCSSHHHH----
T ss_pred CCeEEE-EEeCCC--CccHHHHHHh-ccCcCcHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHhc--Ccchhhhh----
Confidence 245554 444543 5666555554 3333223455554 3467889999999999999998744 56787553
Q ss_pred CccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCCC
Q 017031 236 PIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 236 ~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~~ 296 (378)
.+++|...++++.+++ . +. ++.+|||||++|++++++...+ +.+.|++.+..
T Consensus 232 --~~~~p~l~~~~~~~~~----~-a~-ga~~sGsG~~v~~l~~~~~~~~-~~~~l~~~~~~ 283 (296)
T 1h72_C 232 --GKLIPNYFKIKEEVKD----K-VY-GITISGSGPSIIAFPKEEFIDE-VENILRDYYEN 283 (296)
T ss_dssp --HTTSTTHHHHHHHHTT----T-EE-EEEECTTSSCEEEEECGGGHHH-HHHHHHHHCSC
T ss_pred --hccCccHHHHHHHHHh----h-cc-eEEEecCChheEEEecHHHHHH-HHHHHHHhccC
Confidence 3567788888877764 2 34 6788999999999995444444 88898887753
No 8
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.94 E-value=9.7e-26 Score=218.06 Aligned_cols=243 Identities=16% Similarity=0.149 Sum_probs=161.2
Q ss_pred cCCCCeeEEEEecCCCCCeEEECCee---ccc-CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCC
Q 017031 4 SASPLIPITSVLPQPLPSVLALTKIE---ISL-GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFP 79 (378)
Q Consensus 4 ~~~~~~~~t~v~~~~~~D~i~lnG~~---~~~-~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP 79 (378)
.+..++-+-+|.+. .+.+.+.+.. .+. +.+.+.++++.+++ . ..+++|+++++||
T Consensus 23 ~al~l~d~v~~~~~--~~~~~i~~~~~~~~p~~~~nlv~~a~~~~~~---~----------------~~g~~i~i~~~iP 81 (298)
T 3hul_A 23 LALTLYLTLDIGAE--ADSWYIEHNIGGGIPHDETNVIIETALNLAP---N----------------LTPHHLVMTCDIP 81 (298)
T ss_dssp EEEEEEEEEEEEEE--CSSCEEECCCCTTCCSSTTSHHHHHHHHHCT---T----------------CCCEEEEEEECSC
T ss_pred hhcccceEEEEEEc--CCceEEEecCcccCCCCCCcHHHHHHHHHhc---c----------------CCceEEEEecCCC
Confidence 34456655556532 3444444431 222 24567777666544 1 2579999999999
Q ss_pred CcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---cchhccccCeEEEecccCCCCCCceEEEccCCCCCC
Q 017031 80 TAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN 156 (378)
Q Consensus 80 ~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsG---sa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp 156 (378)
.++|||||||.++|++.|++++|+++++.+||.++|.+++| ++++|+|||+++ ..|.+ ......+++ ||
T Consensus 82 ~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg~~ddv~~~~~GG~~~-~~g~g---e~~~~~~~~----~p 153 (298)
T 3hul_A 82 PARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEGHPDNVAPAVLGNWVV-GAKLD---GEDFYVRHL----FP 153 (298)
T ss_dssp TTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHSCSTTHHHHHHCSEEE-EEEET---TEEEEEEEC----CC
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCcccCcccccCCEEE-EEeCC---CcEEEEEcC----CC
Confidence 99999999999999999999999999999999999999887 688999999986 44432 112233443 56
Q ss_pred CceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCC
Q 017031 157 DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPP 236 (378)
Q Consensus 157 ~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~ 236 (378)
+++++ ++.|+. .++|.+..+. ++....+.+.+.+ ..+...++.++.++|++.|++.+.+| .+|+...
T Consensus 154 ~~~~v-lv~p~~--~~sT~~a~~~-l~~~~~~~~~~~~--~~~~~~~~~al~~~d~~~l~~~l~nd--~~~e~~~----- 220 (298)
T 3hul_A 154 DCALI-AFIPKA--ELLTSESRGV-LPDTLPFKEAVQA--SSIANVMIAAILRNDMTLAGEMMERD--LWHEKYR----- 220 (298)
T ss_dssp -CEEE-EEECCC--CCC---------CCEEEHHHHHHH--HHHHHHHHHHHTTTCHHHHHHHHTCC--CC----------
T ss_pred CeEEE-EEECCC--CCCcHHHHHH-HhhhccHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHhhh--HHHHHHH-----
Confidence 66655 445653 5666665543 3333223344443 34678899999999999999987433 4676443
Q ss_pred ccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhhCC
Q 017031 237 IFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 295 (378)
Q Consensus 237 ~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~f~ 295 (378)
..+.|...++++.+++ .|+. ++.+|||||++|+++++++..+ +.+.|++.+.
T Consensus 221 -~~~~p~l~~l~~~~~~----~Ga~-ga~~SGsGptv~al~~~~~a~~-v~~~l~~~~~ 272 (298)
T 3hul_A 221 -SQLVPHLAQIRDVAKN----QGAY-AACLSGAGPTVLVFAPRNLANK-LQTSLQTLEI 272 (298)
T ss_dssp -CTTGGGHHHHHHHHHT----TTCC-EEEECTTSSCEEEEECGGGHHH-HHHHHHTTCC
T ss_pred -HhhCchHHHHHHHHHH----CCCE-EEEEeccchheEEEECHHHHHH-HHHHHHhcCC
Confidence 3356777777776654 5887 7889999999999999554444 8888887653
No 9
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.93 E-value=4.5e-25 Score=214.19 Aligned_cols=239 Identities=14% Similarity=0.123 Sum_probs=170.4
Q ss_pred CCCeeEEEEecCCCCCeEEECCe---eccc-CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCc
Q 017031 6 SPLIPITSVLPQPLPSVLALTKI---EISL-GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA 81 (378)
Q Consensus 6 ~~~~~~t~v~~~~~~D~i~lnG~---~~~~-~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~a 81 (378)
.+|+-+-+|.+. ++.++.+.|. ..+. +.+.+.++++.+++.++. ..+++|+++|+||.+
T Consensus 38 l~l~D~l~~~~~-~~~~i~~~g~~~~~~p~~~~Nlv~~A~~~l~~~~g~----------------~~~~~i~i~~~iP~~ 100 (306)
T 3pyf_A 38 VSLVDEVTVRNA-DVLSLELVGEGADQLPTDERNLAWQAAELMAEHVGR----------------APDVSIMIDKSIPVA 100 (306)
T ss_dssp EEEEEEEEEEEC-SSCEEEEESTTGGGSCCSTTSHHHHHHHHHHHHTTC----------------CCCEEEEEEECSCTT
T ss_pred cccCCEEEEEEC-CCCEEEEeCCCccCCCCCCccHHHHHHHHHHHHhCC----------------CCCeEEEEecCCCCC
Confidence 345555556553 2456777664 2333 368899999999987764 358999999999999
Q ss_pred ccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEE
Q 017031 82 AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVII 161 (378)
Q Consensus 82 aGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~v 161 (378)
+|||||||.++|++.|+|++|+++++.+||.++|.+.++++++|++||+++ ..|.++ ...+++.+ ++++++
T Consensus 101 ~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~~Dv~~~~~Gg~~~-~~g~ge-----~~~~l~~~---~~~~~v 171 (306)
T 3pyf_A 101 GGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLGSDVPFALHGGTAL-GTGRGE-----ELATVLSR---NTFHWV 171 (306)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTHHHHHHBSEEE-ECSSSS-----CCEEECCS---SCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCceeecCceEE-EEeeCC-----eEEEccCC---CCcEEE
Confidence 999999999999999999999999999999999999999999999999975 444321 23455322 345554
Q ss_pred EEEECCCCCccCchhhhhhhhccchhHHHHHhhh-chHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCcccc
Q 017031 162 IAVVSSRQKETSSTTGMRESVETSLLLQHRAKEV-VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYM 240 (378)
Q Consensus 162 ilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~-~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl 240 (378)
++.|+. .++|.+..+.. +.. ... ..+ ...+...++.++.++|++.|++.+ . |.|+... +.+
T Consensus 172 -l~~P~~--~vsT~~a~~~l-~~~---~~~-~~~~~~~~~~~~~~al~~~d~~~l~~~l-~--n~le~~~-------~~~ 233 (306)
T 3pyf_A 172 -LAFADS--GLLTSAVYNEL-DRL---REV-GDPPRLGEPGPVLAALAAGDPDQLAPLL-G--NEMQAAA-------VSL 233 (306)
T ss_dssp -EEECSS--CCCHHHHHHHH-HHH---HHH-SCCCCCCCHHHHHHHHHHTCHHHHGGGC-E--ETTHHHH-------HHH
T ss_pred -EEECCC--CCcHHHHHHhh-hhh---ccc-cccccccCHHHHHHHHHhCCHHHHHHHh-c--cchHHHH-------HHh
Confidence 445653 56665554332 110 000 011 123678999999999999999865 2 4465543 344
Q ss_pred CchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHhh
Q 017031 241 NDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFF 293 (378)
Q Consensus 241 ~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~~ 293 (378)
.|...++++.+.+ .|+. ++.+|||||++|+++++++.++++.+.|++.
T Consensus 234 ~P~l~~i~~~~~~----~Ga~-ga~mSGsGptvfal~~~~~~a~~~~~~l~~~ 281 (306)
T 3pyf_A 234 DPALARALRAGVE----AGAL-AGIVSGSGPTCAFLCTSASSAIDVGAQLSGA 281 (306)
T ss_dssp CTHHHHHHHHHHH----TTCS-EEEECTTSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHh----cCCC-EEEEcCcchhheEEeCCHHHHHHHHHHHHhc
Confidence 5677777766654 6887 7889999999999998876555588877764
No 10
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.92 E-value=1.1e-23 Score=205.12 Aligned_cols=258 Identities=14% Similarity=0.111 Sum_probs=170.3
Q ss_pred cccCCCCeeEEEEecCCCCCeEE-ECCee-ccc----CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEe
Q 017031 2 IASASPLIPITSVLPQPLPSVLA-LTKIE-ISL----GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASF 75 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~~~~~D~i~-lnG~~-~~~----~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~ 75 (378)
|+.+.+++++.+|.+...++.+. .++.. .+. ..+.+.++++.+++..+.. ....+++|+++
T Consensus 37 l~~ai~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~-------------~~~~g~~i~i~ 103 (332)
T 2hfs_A 37 IVAGISEYTECRLEINPGVPGLQVDDQRPAIPGYIAQKRDEQIKAHQLVLDHLKVD-------------LSGDGLKMFIG 103 (332)
T ss_dssp EEEEEEEEEEEEEEEETTCCSEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHTTBC-------------CSSSEEEEEEE
T ss_pred EEEEecccEEEEEEEcCCCCCeEEEecCccccccccccchhHHHHHHHHHHHcCCc-------------cCCCceEEEEE
Confidence 44556678777887653223343 23321 111 1244566677666655431 01257999999
Q ss_pred cCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---------cchhccccCeEEEecccCCCCCCceE
Q 017031 76 NNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---------SACRSLFGGFVKWILGKEGNGSDSLA 146 (378)
Q Consensus 76 nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsG---------sa~rsl~GG~v~~~~g~~~dg~ds~~ 146 (378)
++||.++|||||||.++|++.|++++++++++.++|.++|+++++ |.++|+|||++.+..+.+ +...
T Consensus 104 ~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~D~~~~~~Gg~~~~~~~~g----~~~~ 179 (332)
T 2hfs_A 104 GPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGADNTAATYGGLILYRRQNG----KSVF 179 (332)
T ss_dssp CSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSHHHHHHHHCEEEEEEECSS----SEEE
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcHhHHHHhcCCeEEEecCCC----Ccce
Confidence 999999999999999999999999999999999999999987652 678899999988765532 1235
Q ss_pred EEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhcc----chhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhc
Q 017031 147 VQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVET----SLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCAD 222 (378)
Q Consensus 147 ~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~t----s~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~d 222 (378)
++++. +|+++++ ++.|. ..++|.+.++..... .+.++...+. ...++.+++++|.++|++.|++++..+
T Consensus 180 ~~~~~---~~~~~~v-l~~~~--~~~~T~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~l~~~~~~~ 252 (332)
T 2hfs_A 180 KPIAF---QQRLYLV-VVGTG--INASTAKVVNDVHKMKQQQPVQFKRLYDN-YTHIVSQAREALQKGDLQRLGQLMNAN 252 (332)
T ss_dssp EEECC---CSCEEEE-EEECS--CCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred eeecC---CCCcEEE-EEECC--CCccHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56542 2456655 44454 356666555432211 1111112222 245678899999999999999987543
Q ss_pred hhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCc--eeEEEecCcchHHHHHHHHHhhCCC
Q 017031 223 SNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 223 sn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP--~v~~i~~~~~~~~~v~~~l~~~f~~ 296 (378)
.+.++. +. ...|...++++.+++ .|+. ++.+||||| ++|+++++++..+++.+.+++.|..
T Consensus 253 ~~~l~~-~~-------~~~p~l~~l~~~~~~----~Ga~-ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~~~ 315 (332)
T 2hfs_A 253 HDLCRQ-ID-------VSCRELESIVQTCRT----YGAL-GAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPE 315 (332)
T ss_dssp HHHHHH-TT-------CCCHHHHHHHHHHHH----TTCS-EEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-cC-------CCCHHHHHHHHHHHH----cCCc-eEEeccCCCCcEEEEEecCcccHHHHHHHHHHHHhc
Confidence 334443 21 245566666666553 5887 788899999 8999998765444488888887754
No 11
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.92 E-value=4.5e-25 Score=209.97 Aligned_cols=221 Identities=13% Similarity=0.084 Sum_probs=158.0
Q ss_pred CCCeeEEEEecCCCCCeEEECCeeccc-CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccC
Q 017031 6 SPLIPITSVLPQPLPSVLALTKIEISL-GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 84 (378)
Q Consensus 6 ~~~~~~t~v~~~~~~D~i~lnG~~~~~-~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGL 84 (378)
.+++.+. +.+ ++++.++|...+. ..+.+.++++.+++.++. ..+++|+++|+||+++||
T Consensus 37 i~l~~~v-~~~---~~~i~i~~~~~~~~~~nlv~~a~~~~~~~~g~----------------~~g~~i~i~~~IP~g~GL 96 (271)
T 2v8p_A 37 IPFYDEI-YIR---EGVLRVETNIGIPQEENLVYKGLREFERITGI----------------EINYSIFIQKNIPPGAGL 96 (271)
T ss_dssp EEEEEEE-EEE---ESSCEEEESSCCCTTTCHHHHHHHHHHHHHCC----------------CCCEEEEEECCSCTTSSS
T ss_pred cCcccEE-EEe---CCeEEEEeCCCCCCCchHHHHHHHHHHHHhCC----------------CCCeEEEEEeCCCCCCCC
Confidence 3456666 654 3456666632222 257888999999887654 257999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCC-CceEEEE
Q 017031 85 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN-DLVIIIA 163 (378)
Q Consensus 85 gSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp-~l~~vil 163 (378)
|||||.++|++.|+|++|+++++.+||.++|+++++++++|++||++++. |.+ ...++++ +| +++++++
T Consensus 97 GsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e~dv~~~~~gg~~~~~-g~g-----~~~~~l~----~~~~~~~vl~ 166 (271)
T 2v8p_A 97 GGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADAPFFLLGKSAIGR-GKG-----EVLEPVE----TEISGKITLV 166 (271)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCTTTGGGGTCSEEEEE-TTT-----TEEEECC----CCCCSEEEEE
T ss_pred chHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHHHHhcCCeEEEE-EcC-----CEEEEcc----CCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999998753 331 1245553 35 6666544
Q ss_pred EECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCch
Q 017031 164 VVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDT 243 (378)
Q Consensus 164 vv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~ 243 (378)
.|. ..++|.+.++. ++.. . ..++..+ .+|.++|++.|++++ . |.||+... .+.|.
T Consensus 167 -~p~--~~~sT~~~~~~-~~~~-------~---~~~~~~~-~al~~~d~~~~~~~~-~--n~l~~~~~-------~~~p~ 221 (271)
T 2v8p_A 167 -IPQ--VSSSTGRVYSS-LREE-------H---FVTPEYA-EEKIQRIISGEVEEI-E--NVLGDIAR-------ELYPE 221 (271)
T ss_dssp -ECS--SCCCHHHHHHT-CCTT-------S---CCCHHHH-HHHHHHHHTTCGGGC-C--BHHHHHHH-------HHCHH
T ss_pred -eCC--CCCCHHHHHHh-cccc-------c---CcchhHH-HHhhcCCHHHHHHHH-h--CChhhHhH-------HhChH
Confidence 454 35665554443 2211 1 1245556 999999999998864 3 67888643 34556
Q ss_pred HHHHHHHHHHHHHhcCCCeEEE-EeCCCceeEEEecCcchHHHHHH
Q 017031 244 SHRIISYVERWNRSVGSPQVAY-TFDAGPNAVLIARNRKIATELLQ 288 (378)
Q Consensus 244 s~~ii~~v~~~~~~~G~~~~a~-tsgAGP~v~~i~~~~~~~~~v~~ 288 (378)
..++++.+++ .|+ +. +|||||++|+++++++.++++.+
T Consensus 222 l~~~~~~~~~----~Ga---a~~mSGsG~~v~~l~~~~~~a~~~~~ 260 (271)
T 2v8p_A 222 INEVYRFVEY----LGF---KPFVSGSGSTVYFFGGASEELKKAAK 260 (271)
T ss_dssp HHHHHHHHHH----TTC---CCEECTTSSCEEESSCCCHHHHHHHH
T ss_pred HHHHHHHHHh----CCC---ccCccccCcCeEEEeCCHHHHHHHHh
Confidence 6666666554 465 66 89999999999987765553554
No 12
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.91 E-value=5.6e-23 Score=196.00 Aligned_cols=243 Identities=12% Similarity=0.023 Sum_probs=156.2
Q ss_pred ccCC-CCeeEEEEecCCCCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCc
Q 017031 3 ASAS-PLIPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA 81 (378)
Q Consensus 3 ~~~~-~~~~~t~v~~~~~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~a 81 (378)
+.+. +++++.+|.+. ++.+.+++... .+.+.++.+. +.+. ...+++|+++++||.+
T Consensus 30 ~~ai~~~~~~v~v~~~--~~~~~i~~~~~---~~~~~~~~~~---~~~~---------------~~~g~~i~i~~~iP~g 86 (292)
T 2oi2_A 30 SLPLLEVEVTCKVVPA--ESPWRLYEEDT---LSMAVYASLE---YLNI---------------TEACIRCEIDSAIPEK 86 (292)
T ss_dssp EEEEEEEEEEEEEEEC--SSCCCCCCCSH---HHHHHHHHHH---HHTC---------------SCCCEEEEEC----CC
T ss_pred EEEEcCcEEEEEEEEC--CCceEEEecCc---cchhhhhhHH---Hhcc---------------cCCceEEEEEecCCCC
Confidence 3444 77888888764 23455554321 1233333322 2121 1247999999999999
Q ss_pred ccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc----cCcchh-----ccccCeEEEecccCCCCCCceEEEccCC
Q 017031 82 AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG----SGSACR-----SLFGGFVKWILGKEGNGSDSLAVQLVDE 152 (378)
Q Consensus 82 aGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~g----sGsa~r-----sl~GG~v~~~~g~~~dg~ds~~~~i~~~ 152 (378)
+|||||||.++|++.|++++++++++.+||.++|+++ +|.+|. +.+||++.+..+. ..++++.
T Consensus 87 ~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~d~~~~~~gg~~~~~~~~-------~~~~~~~- 158 (292)
T 2oi2_A 87 RGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGLDAKTCLSDQPIRFIKNV-------GFTELEM- 158 (292)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSHHHHHHTCSSCEEEETTT-------EEEECCC-
T ss_pred CCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCchhHHHHhcCceEEEEcCC-------CceeecC-
Confidence 9999999999999999999999999999999999875 444443 7899998875442 2455532
Q ss_pred CCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhccc
Q 017031 153 EHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLD 232 (378)
Q Consensus 153 ~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~ 232 (378)
.++.+ ++++.. ...++|.+..+......+..+..+.. ..+...+++.+|.++|++.|++++..+.+.+++.
T Consensus 159 -~~~~~---~~i~~~-~~~~sT~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~~--- 229 (292)
T 2oi2_A 159 -DLSAY---LVIADT-GVYGHTREAIQVVQNKGKDALPFLHA-LGELTQQAEIAISQKDAEGLGQILSQAHLHLKEI--- 229 (292)
T ss_dssp -CCSCE---EEEEEC-SSCCCHHHHHHHHHHTGGGGHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---
T ss_pred -CCCCE---EEEEEC-CCCCcHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---
Confidence 23432 333333 24556655544332222221233333 2345678899999999999999886555666652
Q ss_pred CCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCc--eeEEEecCcchHHHHHHHHHhhCC
Q 017031 233 TSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFFFP 295 (378)
Q Consensus 233 ~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP--~v~~i~~~~~~~~~v~~~l~~~f~ 295 (378)
...+|...++++.+++ .|+. ++.+||||| ++|+++++++..+++.+.|++.+.
T Consensus 230 -----~~~~p~l~~l~~~~~~----~Ga~-ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~~~ 284 (292)
T 2oi2_A 230 -----GVSSLEADSLVETALS----HGAL-GAKMSGGGLGGCIIALVTNLTHAQELAERLEEKGA 284 (292)
T ss_dssp -----TCCCHHHHHHHHHHHT----TTCS-EEEEESSSSSSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred -----CCCcHHHHHHHHHHHh----CCCc-eeeeccCCCCcEEEEEecCchHHHHHHHHHHhcCc
Confidence 2445666666666554 5887 788899999 999999874444448888887654
No 13
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.89 E-value=6.2e-23 Score=195.31 Aligned_cols=225 Identities=14% Similarity=0.051 Sum_probs=155.6
Q ss_pred CCCCeeEEEEecCCCCCeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCcccC
Q 017031 5 ASPLIPITSVLPQPLPSVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 84 (378)
Q Consensus 5 ~~~~~~~t~v~~~~~~D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGL 84 (378)
+.+++.+.+|.++ ..++..++ ..+ ..+.+.++++.+++..+. ..+++|+++|+||+++||
T Consensus 32 ai~l~~~v~~~~~--~~~i~~~~-~~~-~~n~v~~a~~~~~~~~g~----------------~~g~~i~i~~~IP~g~GL 91 (275)
T 1uek_A 32 PFSLADRLVVEPV--SSGLHFQG-PYG-RENLAYRAASLYLEAAGQ----------------PGGVRILLEKRIPEGAGL 91 (275)
T ss_dssp EEEEEEEEEEEEE--SSCEEEES-TTG-GGSHHHHHHHHHHHHTTC----------------CCEEEEEEECCSCSSSSS
T ss_pred EcCCCCEEEEEEC--cEEEEEcC-CCC-CccHHHHHHHHHHHHhCC----------------CCCEEEEEecCCCCcCcc
Confidence 3456777777763 34566666 322 457888899988887653 357999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEE
Q 017031 85 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAV 164 (378)
Q Consensus 85 gSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilv 164 (378)
|||||.++|++.|+|++|++++ +|.++|++.++++++|++||++.+ .|.+ . ..++++ .|+++++++
T Consensus 92 GSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g~dv~~~~~Gg~~~~-~g~g---~--~~~~l~----~~~~~~vl~- 157 (275)
T 1uek_A 92 GGGSSDAAQVLLALQALYPAEV---DLFALARTLGADVPFFLLGRGAEA-RGVG---E--RLKPLA----LPPVPAVVF- 157 (275)
T ss_dssp CHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHCTTHHHHHHCSEEEE-ETTT---T--EEEEEC----CCCEEEEEE-
T ss_pred cHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhCCChHHHhcCCeEEE-EccC---c--eeEEcc----CCCcEEEEE-
Confidence 9999999999999999999998 999999999999999999999865 3331 1 345553 356666544
Q ss_pred ECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchH
Q 017031 165 VSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTS 244 (378)
Q Consensus 165 v~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s 244 (378)
.|. ..++|.+.++..... .+. ...++..++.+|.++ ++. + .| |.|+... +.+.|..
T Consensus 158 ~p~--~~~sT~~~~~~~~~~------~~~--~~~~~~~~~~al~~~-~~~--~-~~---n~l~~~~-------~~~~p~l 213 (275)
T 1uek_A 158 FPG--LRVPTPLVYRAVRPE------DFG--PDLPVEAILEALARG-EEP--P-YW---NSLEGPA-------FRLFPEL 213 (275)
T ss_dssp ECC--CCCCHHHHHHTCCGG------GCC--CCCCHHHHHHHHHHT-CCC--S-CC---BTTHHHH-------HHHCTHH
T ss_pred eCC--CCCchHHHHHhCchh------hcc--cCCChHHHHHHHHhc-ccc--c-cc---cchHHHH-------HHhChHH
Confidence 454 366665555432111 010 123466788888877 543 2 22 3354433 3345677
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHh
Q 017031 245 HRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLF 292 (378)
Q Consensus 245 ~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~ 292 (378)
.++++.+++ .|+. ++.+|||||++|+++++++..+++.+.+.+
T Consensus 214 ~~l~~~~~~----~Ga~-ga~~SGsG~~v~~l~~~~~~~~~~~~~l~~ 256 (275)
T 1uek_A 214 KEVRGRMRA----LGLR-GVLMSGSGSAFFGLAEGPDHARRAAEALRA 256 (275)
T ss_dssp HHHHHHHHH----TTCE-EEEECTTSSCEEEECSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHh----CCCC-EEEEeccccCeEEEeCCHHHHHHHHHHhhh
Confidence 777766654 5876 788999999999999875434336666654
No 14
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.89 E-value=1.8e-22 Score=194.55 Aligned_cols=199 Identities=18% Similarity=0.211 Sum_probs=136.4
Q ss_pred ceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--------C-cchhccccCeEEEecccCC
Q 017031 69 HLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS--------G-SACRSLFGGFVKWILGKEG 139 (378)
Q Consensus 69 ~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs--------G-sa~rsl~GG~v~~~~g~~~ 139 (378)
+++|.++++||.++|||||||.++|++.|++++|+++++.++|.++|.+++ | +.+.|++||++.++.|.
T Consensus 86 g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG~d~~~~~~g~~~~~~~g~-- 163 (308)
T 2x7i_A 86 PLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGIDTQTIVSGKPVWFQKGH-- 163 (308)
T ss_dssp CEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHHHHHHHHHTSCEEEETTE--
T ss_pred CeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchHHHHHhhCCceEEEEcCC--
Confidence 789999999999999999999999999999999999999999999998873 3 34567899998776442
Q ss_pred CCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhc---cchhHHHHHhhhchHhHHHHHHHHHcCCHHHHH
Q 017031 140 NGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE---TSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFA 216 (378)
Q Consensus 140 dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~---ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~ 216 (378)
..++++.+ +++.+ ++++.. .+++|.+.++.+.. ..+.... +.+ ...++.+++++|.++|++.|+
T Consensus 164 -----~~~~~~~~---~~~~~--vi~~~~-~~~sT~~~~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~al~~~d~~~l~ 230 (308)
T 2x7i_A 164 -----AETLKTLS---LDGYM--VVIDTG-VKGSTRQAVHDVHKLCEDPQYMSH-VKH-IGKLVLRASDVIEHHKFEALA 230 (308)
T ss_dssp -----EEECSCCC---BSSEE--EEEECC-C--CCSCCCC--------CCHHHH-HHH-HHHHHHHHHHHHHTTCHHHHH
T ss_pred -----CceEeccC---CCceE--EEEECc-CCCCHHHHHHHHHHHHhcCchHHH-HHH-HHHHHHHHHHHHHcCCHHHHH
Confidence 13444321 13333 333332 34566554433221 1111111 333 244677888999999999999
Q ss_pred HHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCc--eeEEEecCcchHHHHHHHHHhhC
Q 017031 217 QLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFFF 294 (378)
Q Consensus 217 ~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP--~v~~i~~~~~~~~~v~~~l~~~f 294 (378)
+++ |.+|..+.+ + ....|...++++.+++ .|+. ++.+||||| ++|+++++++..+++.+.|++.+
T Consensus 231 ~~~----~~~~~~~~~-~---~~~~p~l~~l~~~~~~----~Ga~-ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~~~ 297 (308)
T 2x7i_A 231 DIF----NECHADLKA-L---TVSHDKIEQLMKIGKE----NGAI-AGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAG 297 (308)
T ss_dssp HHH----HHHHHHHHH-H---SCCCHHHHHHHHHHHH----TTCS-EEEESBTTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHH----HHHHHHHHH-h---CCCCHHHHHHHHHHHH----CCCc-EEEeeccCCCcEEEEEeCChhHHHHHHHHHHhCC
Confidence 986 346666654 1 2345666666666654 5887 788899999 99999987444444888888776
Q ss_pred C
Q 017031 295 P 295 (378)
Q Consensus 295 ~ 295 (378)
.
T Consensus 298 ~ 298 (308)
T 2x7i_A 298 A 298 (308)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.88 E-value=2.7e-21 Score=194.74 Aligned_cols=223 Identities=16% Similarity=0.129 Sum_probs=146.4
Q ss_pred chHHHHHHHHHHh-cccccccccccccccccccccceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHH
Q 017031 35 GRYQNCLKEIRSR-ACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSA 113 (378)
Q Consensus 35 ~r~~~~l~~~r~~-~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~ 113 (378)
+.++.++..+++. ++. ..+++|.++++||+++|||||||.++|++.|++++++++++.++|.+
T Consensus 122 n~v~~~~~~l~~~g~~~----------------~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~ 185 (419)
T 1pie_A 122 NYVKGMIVMLKGAGYEI----------------DKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQ 185 (419)
T ss_dssp HHHHHHHHHHHHTTCCC----------------CSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC----------------CCCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4566677777654 111 25799999999999999999999999999999999999999999999
Q ss_pred HHHhc--------cC--cchhccccC--eEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCc------h
Q 017031 114 IARQG--------SG--SACRSLFGG--FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSS------T 175 (378)
Q Consensus 114 lAr~g--------sG--sa~rsl~GG--~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsS------t 175 (378)
+|.++ +| +.++|+||| .++|..+.+ ...++++.+ +++++++ ++.|.....+++ +
T Consensus 186 la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~-----~~~~~l~~~--~~~~~~v-l~~~~~~~~t~~~~y~~r~ 257 (419)
T 1pie_A 186 LGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNT-----LKYEMVPVE--LRDYDIV-IMNTNKPRALTESKYNERF 257 (419)
T ss_dssp HHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTT-----CCEEEEECC--CTTEEEE-EEECCCCCCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCC-----CceEEeecC--CCCcEEE-EEECCCccccccchHHHHH
Confidence 99874 33 667899998 444443321 124566422 2456654 444543222221 0
Q ss_pred ---hhhhhhhc----------cch-h------------HHHHHhhhc--hHhHHHHHHHHHcCCHHHHHHHHHhchhhhh
Q 017031 176 ---TGMRESVE----------TSL-L------------LQHRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADSNQFH 227 (378)
Q Consensus 176 ---~~m~~~~~----------ts~-~------------~~~~i~~~~--~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lh 227 (378)
+...+.+. ..+ . ...+..+++ ..++..++++|.++|++.|++++..+.+.++
T Consensus 258 ~~~~~a~~~l~~~~~v~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~ 337 (419)
T 1pie_A 258 AETREALKRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLK 337 (419)
T ss_dssp HHHHHHHHHHHHHCCCSSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11111111 000 0 111222211 2368889999999999999999865555565
Q ss_pred hhcccCCCCccccCchHHHHHHHHHHHHHhc-CCCeEEEEeCCC--ceeEEEecCcchHHHHHHHHHhhC
Q 017031 228 AVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLFFF 294 (378)
Q Consensus 228 a~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~-G~~~~a~tsgAG--P~v~~i~~~~~~~~~v~~~l~~~f 294 (378)
..+ ...+|...++++.+++ . |+. ++.+|||| |+++++++++..++ +.+.|++.|
T Consensus 338 ~~~-------~~~~p~l~~l~~~a~~----~~Ga~-ga~lsGaG~Gg~v~al~~~~~a~~-~~~~l~~~~ 394 (419)
T 1pie_A 338 DDY-------EVTGLELDTLAETAQK----QAGVL-GARMTGAGFGGCAIALVAHDNVSA-FRKAVGQVY 394 (419)
T ss_dssp HTS-------CCCCHHHHHHHHHHHH----STTEE-EEEECSSCSSSEEEEEEEGGGHHH-HHHHHHHHH
T ss_pred Hhh-------CCCCHHHHHHHHHHHh----cCCCc-eeeEecCCCCeEEEEEEchhhHHH-HHHHHHHHH
Confidence 532 1245666666665554 4 877 77888998 99999998866555 888887655
No 16
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.88 E-value=3.1e-21 Score=188.12 Aligned_cols=195 Identities=17% Similarity=0.114 Sum_probs=134.8
Q ss_pred ccceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc---------CcchhccccCeEEEeccc
Q 017031 67 KLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS---------GSACRSLFGGFVKWILGK 137 (378)
Q Consensus 67 ~~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs---------Gsa~rsl~GG~v~~~~g~ 137 (378)
..+++|.++++||.++|||||||.++|++.|++++++++++.++|.++|.+++ .|.+.|+|||+++. +.
T Consensus 95 ~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~~D~~~~~~Gg~~~~--~~ 172 (321)
T 4hac_A 95 INGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAASPTDTYVSTFGGVVTI--PE 172 (321)
T ss_dssp CCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCSEEEE--TT
T ss_pred CCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHcCCeEEE--cC
Confidence 35799999999999999999999999999999999999999999999998765 25788999999875 32
Q ss_pred CCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhh---ccch-hHHHHHhhhchHhHHHHHHHHHcCCHH
Q 017031 138 EGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESV---ETSL-LLQHRAKEVVPKRIVQMEEAIQNHDFS 213 (378)
Q Consensus 138 ~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~---~ts~-~~~~~i~~~~~~~~~~l~~Ai~~~D~~ 213 (378)
+ +++. +|+++++ ++.|.. ..+|.+..+... ...+ .++..+.+ ......++++||.++|++
T Consensus 173 ---~-----~~l~----~p~~~~v-lv~p~~--~~sT~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~ 236 (321)
T 4hac_A 173 ---R-----RKLK----TPDCGIV-IGDTGV--FSSTKELVANVRQLRESYPDLIEPLMTS-IGKISRIGEQLVLSGDYA 236 (321)
T ss_dssp ---C-----CEEC----CCCCEEE-EEECCC--CCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHTCHH
T ss_pred ---C-----ceec----cCCCEEE-EEECCC--CccHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHhCCHH
Confidence 1 1232 2455554 444543 455544433321 1111 12222332 234566788999999999
Q ss_pred HHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCc--eeEEEecCcchHHHHHHHHH
Q 017031 214 SFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLL 291 (378)
Q Consensus 214 ~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP--~v~~i~~~~~~~~~v~~~l~ 291 (378)
.|++++..+.+.+... ...+|...++++.+++ .|+. ++.+||||| ++++++++++..+ +.+.|+
T Consensus 237 ~lg~~~~~~~~~~~~~--------~v~~p~l~~l~~~a~~----~Ga~-ga~~SGaG~GG~v~al~~~~~a~~-~~~~l~ 302 (321)
T 4hac_A 237 SIGRLMNVNQGLLDAL--------GVNILELSQLIYSARA----AGAF-GAKITGAGGGGCMVALTAPEKCNQ-VAEAVA 302 (321)
T ss_dssp HHHHHHHHHHHHHHHH--------TCCCHHHHHHHHHHHH----TTCS-EEEECSSCSSSEEEEEECSTTHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHH----CCCC-EEEECccCCCCEEEEEcCHHHHHH-HHHHHH
Confidence 9999874332222221 1245666666666654 5887 788899999 8999995554444 888887
Q ss_pred hh
Q 017031 292 FF 293 (378)
Q Consensus 292 ~~ 293 (378)
+.
T Consensus 303 ~~ 304 (321)
T 4hac_A 303 GA 304 (321)
T ss_dssp HT
T ss_pred hC
Confidence 64
No 17
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.88 E-value=9.6e-22 Score=192.31 Aligned_cols=259 Identities=14% Similarity=0.089 Sum_probs=159.0
Q ss_pred cccCCCCeeEEEEecCCCCCeEEECCee-------c--c--cC-cchHHHHHHHHHHhcccccccccccccccccccccc
Q 017031 2 IASASPLIPITSVLPQPLPSVLALTKIE-------I--S--LG-GGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLH 69 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~~~~~D~i~lnG~~-------~--~--~~-~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 69 (378)
|+.+.+++++.+|.+.. ++.+.+.+.. . . .. .+.++.++..+++. +. ...+
T Consensus 25 l~~ai~~~~~v~v~~~~-~~~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~~---------------~~~g 87 (350)
T 2cz9_A 25 MPMAINLYTKIEAEKHG-EVILYSEHFGEERKFSLNDLRKENSWIDYVKGIFWVLKES-DY---------------EVGG 87 (350)
T ss_dssp EEEEEEEEEEEEEEEES-SEEEEETTTTEEEEECTTCCCCCSSTHHHHHHHHHHHHHT-TC---------------CCCE
T ss_pred EEEEeeceEEEEEEECC-CCeEEEEECCCCccccccCCCCCCcHHHHHHHHHHHHHhc-CC---------------CCCC
Confidence 34455677777777642 2345554321 1 1 11 34555666666553 21 0257
Q ss_pred eEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---cchhccccCeEEEecccC----CCCC
Q 017031 70 LHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---SACRSLFGGFVKWILGKE----GNGS 142 (378)
Q Consensus 70 v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsG---sa~rsl~GG~v~~~~g~~----~dg~ 142 (378)
++|.++++||.++|||||||.++|++.|++++++++++.+||.++|.+++. ..+.+++|+++.+..+.. .|..
T Consensus 88 ~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~ 167 (350)
T 2cz9_A 88 IKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTH 167 (350)
T ss_dssp EEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEETT
T ss_pred eEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEEecC
Confidence 999999999999999999999999999999999999999999999988764 222244343332111000 0001
Q ss_pred CceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhh----------hh-----c---------cchhHHHHHhhhc--
Q 017031 143 DSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE----------SV-----E---------TSLLLQHRAKEVV-- 196 (378)
Q Consensus 143 ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~----------~~-----~---------ts~~~~~~i~~~~-- 196 (378)
+...++++.+ +++++++ +.|.....+++.. +.. .+ . ..+.+..+..+++
T Consensus 168 ~~~~~~l~~~---~~~~~vl-~~~~~~~~~~t~~-~~~r~~~~~~a~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~~~ 242 (350)
T 2cz9_A 168 TLDYEYIPFP---KDVSILV-FYTGVRRELASSE-YAERKHIAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIVRE 242 (350)
T ss_dssp TCCEEEEECC---TTEEEEE-EECSCC----CHH-HHHHHHHHHHHHHHHTCSCGGGCCGGGGGGSCHHHHHHHHHHHHH
T ss_pred CCcEEEEcCC---CCcEEEE-EECCCCCccccch-HHHHHHHHHHHHHHhChhhhhhCCHHHHhhCCHHHHHHHHHHhhH
Confidence 1235666432 4566554 4455433354432 211 00 0 0111111222211
Q ss_pred hHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCC--ceeE
Q 017031 197 PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAV 274 (378)
Q Consensus 197 ~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAG--P~v~ 274 (378)
..++..++.+|.++|++.|++++..+.+.||+... ..+|...++++.+++ .|+. ++.+|||| |+++
T Consensus 243 ~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~-------~~~p~l~~l~~~~~~----~Ga~-ga~lsGaG~G~~v~ 310 (350)
T 2cz9_A 243 NARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYE-------VSCKELDFFVERALK----LGAY-GARLTGAGFGGSAI 310 (350)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHH----TTCS-EEEECSSCSSSEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHH----cCCC-EEEEecCCCceEEE
Confidence 23588899999999999999998777778887432 245666666666654 5887 77889998 9999
Q ss_pred EEecCcchHHHHHHHHHhhCC
Q 017031 275 LIARNRKIATELLQRLLFFFP 295 (378)
Q Consensus 275 ~i~~~~~~~~~v~~~l~~~f~ 295 (378)
+++++++.++ +.+.+++.|.
T Consensus 311 ~l~~~~~~~~-~~~~l~~~~~ 330 (350)
T 2cz9_A 311 ALVDKEDAET-IGEEILREYL 330 (350)
T ss_dssp EEEEGGGHHH-HHHHHHHHHH
T ss_pred EEEchhhHHH-HHHHHHHHHH
Confidence 9998866555 8888776553
No 18
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.87 E-value=7.4e-21 Score=183.91 Aligned_cols=193 Identities=16% Similarity=0.161 Sum_probs=132.8
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--------C-cchhccccCeEEEecccC
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS--------G-SACRSLFGGFVKWILGKE 138 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs--------G-sa~rsl~GG~v~~~~g~~ 138 (378)
.+++|.++++||.++|||||||.++|++.|++++++++++.++|.++|.+++ | |+++|+|||++++ .+.
T Consensus 98 ~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg~D~~~~~~Gg~~~~-~~~- 175 (317)
T 1kkh_A 98 TGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGILEI-KNN- 175 (317)
T ss_dssp SCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCSHHHHHHHHCSEEEE-SSS-
T ss_pred CCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHhCCeEEE-cCC-
Confidence 5799999999999999999999999999999999999999999999998763 4 7899999999876 321
Q ss_pred CCCCCceEEEccCCCCCCC-c---eEEEEEECCCCCccCchhhhhhhhcc-chhHHHHHhhhchHhHHHHHHHHHcCCHH
Q 017031 139 GNGSDSLAVQLVDEEHWND-L---VIIIAVVSSRQKETSSTTGMRESVET-SLLLQHRAKEVVPKRIVQMEEAIQNHDFS 213 (378)
Q Consensus 139 ~dg~ds~~~~i~~~~~wp~-l---~~vilvv~~~~k~vsSt~~m~~~~~t-s~~~~~~i~~~~~~~~~~l~~Ai~~~D~~ 213 (378)
. .++++. .||+ + +.++++.|.. ..+|.+..+ .++. .+. ...+. .....+.+++..+|++
T Consensus 176 ----~--~~~~~~--~~~~~l~~~~~~vl~~~~~--~~~T~~~~~-~~~~~~~~-~~~~~----~~~~~~~~a~~~~d~~ 239 (317)
T 1kkh_A 176 ----K--FRKIKG--EFEEFLKNCKFLIVYAEKR--KKKTAELVN-EVAKIENK-DEIFK----EIDKVIDEALKIKNKE 239 (317)
T ss_dssp ----C--EEEECH--HHHHHHHTCCEEEEEEECC--CSCHHHHHH-HHHTCTTH-HHHHH----HHHHHHHHHHHCCSHH
T ss_pred ----C--ceEecC--CcccccccCcEEEEEECCC--cCcHHHHHH-HHHHhhcc-HHHHH----HHHHHHHHHHHcCCHH
Confidence 1 345531 1332 2 2334444543 455444433 2322 221 22222 2233467889999999
Q ss_pred HHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCc--eeEEEecCcchHHHHHHHHH
Q 017031 214 SFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLL 291 (378)
Q Consensus 214 ~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP--~v~~i~~~~~~~~~v~~~l~ 291 (378)
.|++++.. .|....+ + .+..|...++++.+++ .| . ++.+||||| ++++++++++..+ +.+.|+
T Consensus 240 ~l~~~~~~----~~~~~~~-~---~~~~p~l~~~~~~~~~----~G-~-ga~~sGaG~GG~v~~l~~~~~~~~-~~~~l~ 304 (317)
T 1kkh_A 240 DFGKLMTK----NHELLKK-L---NISTPKLDRIVDIGNR----FG-F-GAKLTGAGGGGCVIILVNEEKEKE-LLKELN 304 (317)
T ss_dssp HHHHHHHH----HHHHHHT-T---TCCCHHHHHHHHHHHH----HS-S-EEEECSSSSSEEEEEECCGGGHHH-HHHHHH
T ss_pred HHHHHHHH----HHHHHHh-c---CCCCHHHHHHHHHHHh----cC-c-eeEEeecCCCCEEEEEechhhHHH-HHHHHH
Confidence 99998743 2333221 1 2346677777666654 47 6 788899999 9999998777444 888877
Q ss_pred hh
Q 017031 292 FF 293 (378)
Q Consensus 292 ~~ 293 (378)
+.
T Consensus 305 ~~ 306 (317)
T 1kkh_A 305 KE 306 (317)
T ss_dssp TS
T ss_pred hc
Confidence 53
No 19
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.86 E-value=1e-21 Score=188.44 Aligned_cols=222 Identities=9% Similarity=0.017 Sum_probs=146.6
Q ss_pred CCCCeeEEEEecCCCCCeEEECCee--cccCcchHHHHHHHHHHhc------ccccccccccccccccccccceEEEEec
Q 017031 5 ASPLIPITSVLPQPLPSVLALTKIE--ISLGGGRYQNCLKEIRSRA------CDVEDTEKGIKIEKKDWQKLHLHIASFN 76 (378)
Q Consensus 5 ~~~~~~~t~v~~~~~~D~i~lnG~~--~~~~~~r~~~~l~~~r~~~------~~~~~~~~~~~~~~~~~~~~~v~I~s~n 76 (378)
+.+++.+.+|.+.. ++++.+.+.. .+.+.+.+.++++.+++.+ +. ..+++|+++|
T Consensus 34 ai~l~~~v~v~~~~-~~~i~i~~~~~~~~~~~nlv~~a~~~~~~~~~~~~~~g~----------------~~g~~i~i~~ 96 (283)
T 2ww4_A 34 FLDYGDTISIELRD-DGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLPT----------------GSGANISIDK 96 (283)
T ss_dssp EEEEEEEEEEEEES-SSCEEECSCBTTBCGGGSHHHHHHHHHHHHHHHTTCSCT----------------TCEEEEEEEC
T ss_pred ECCCCcEEEEEECC-CCcEEEEeCCCCCCCcccHHHHHHHHHHHHhhhhcccCC----------------CCceEEEEEe
Confidence 44677777777643 3457676541 1112567888888887765 32 3579999999
Q ss_pred CCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcchhccccCeEEEecccCCCCCCceEEEccCCCCCC
Q 017031 77 NFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN 156 (378)
Q Consensus 77 niP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsGsa~rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp 156 (378)
+||.++|||||||.++|++.|+|++++++++.+||.++|.+.++++++|++||+++ ..|.+ ...++++ .|
T Consensus 97 ~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e~dv~~~~~gg~~~-~~g~g-----~~~~~l~----~~ 166 (283)
T 2ww4_A 97 RLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAF-AEGVG-----EILTPVD----PP 166 (283)
T ss_dssp CCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTHHHHHHTBCEE-EETTT-----TEEEECC----CC
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCHHHhhcCCeEE-EEecC-----ccceEcC----CC
Confidence 99999999999999999999999999999999999999999999999999999985 44432 1245553 35
Q ss_pred CceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCC
Q 017031 157 DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPP 236 (378)
Q Consensus 157 ~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~ 236 (378)
+++++ ++.|. ..++|.+.++. .. .+ .... ... +.++.++++ + |.++. +
T Consensus 167 ~~~~v-l~~p~--~~~sT~~~~~~-~~-~~-----~~~~-~~~----l~~l~~~~~-------~---nd~~~-------~ 214 (283)
T 2ww4_A 167 EKWYL-VAHPG--VSIPTPVIFKD-PE-LP-----RNTP-KRS----IETLLKCEF-------S---NDCEV-------I 214 (283)
T ss_dssp CCEEE-EECCS--CCCCHHHHHTC-TT-SC-----CCCC-CCC----HHHHHTSCC-------C---BTTHH-------H
T ss_pred CcEEE-EEeCC--CCCchHHHHhc-cc-cc-----ccch-HHH----HHHHHhhhh-------c---CchHH-------H
Confidence 55654 44454 35666555443 21 10 0111 111 123444442 1 33443 3
Q ss_pred ccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHHh
Q 017031 237 IFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLF 292 (378)
Q Consensus 237 ~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~~ 292 (378)
...+.|...++++.+++ .| ++.+|||||++|+++.+++..+++.+.+.+
T Consensus 215 ~~~~~p~l~~i~~~~~~----~G---~a~~SGsG~tvf~l~~~~~~a~~~~~~l~~ 263 (283)
T 2ww4_A 215 ARKRFREVDAVLSWLLE----YA---PSRLTGTGACVFAEFDTESEARQVLEQAPE 263 (283)
T ss_dssp HHHHCHHHHHHHHHHHT----TS---CEEECTTSSCEEEEESSHHHHHHHHHHCCC
T ss_pred HHhcChHHHHHHHHHHH----cC---CceECCcccceEEEeCCHHHHHHHHHHhhh
Confidence 45566777777777654 46 367899999999999876544435555443
No 20
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.85 E-value=1.5e-19 Score=180.89 Aligned_cols=205 Identities=16% Similarity=0.114 Sum_probs=134.9
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc--------cC--cchhccccCe--EEEec
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--------SG--SACRSLFGGF--VKWIL 135 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~g--------sG--sa~rsl~GG~--v~~~~ 135 (378)
.+++|.++++||.++|||||||.++|++.|++++++++++.++|.++|.++ +| |.+.|+|||+ +++..
T Consensus 130 ~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~ 209 (399)
T 1wuu_A 130 PGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLID 209 (399)
T ss_dssp CEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEE
T ss_pred CCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEe
Confidence 479999999999999999999999999999999999999999999999875 34 6678999994 33322
Q ss_pred ccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCch--------hhhh---hhhc-----c-------------ch
Q 017031 136 GKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSST--------TGMR---ESVE-----T-------------SL 186 (378)
Q Consensus 136 g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt--------~~m~---~~~~-----t-------------s~ 186 (378)
+. +...++++.+ +|+++++++ .|.. ..+|. ..++ +.+. . .+
T Consensus 210 ~~-----~~~~~~~~~~--~~~~~~vl~-~~~~--~~~t~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~l~~ 279 (399)
T 1wuu_A 210 CR-----SLETSLVPLS--DPKLAVLIT-NSNV--RHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARDLVSK 279 (399)
T ss_dssp TT-----TCCEEEEECC--CSSEEEEEE-EEEE--EC--CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHHHTTGGGGSCH
T ss_pred cC-----CCceEEecCC--CCCeEEEEE-ECCC--ccccccccHHHHHHHHHHHHHHhChhhhhcCCHHHHHHHHhhcCH
Confidence 22 1124555421 245665544 3432 23332 1111 1110 0 01
Q ss_pred hHHHHHhhhc--hHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEE
Q 017031 187 LLQHRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVA 264 (378)
Q Consensus 187 ~~~~~i~~~~--~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a 264 (378)
....|..+++ ..++..++++|.++|++.|++++..+++.++..+ ...+|...++++.+++. .|+. ++
T Consensus 280 ~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~-------~~~~p~l~~l~~~a~~~---~Ga~-ga 348 (399)
T 1wuu_A 280 EGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDY-------EVSCPELDQLVEAALAV---PGVY-GS 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTS-------CCCCHHHHHHHHHHHTS---TTEE-EE
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHhc---CCce-EE
Confidence 1111122221 2357889999999999999998855444554422 22355566665555431 4876 77
Q ss_pred EEeCCC--ceeEEEecCcchHHHHHHHHHhhC
Q 017031 265 YTFDAG--PNAVLIARNRKIATELLQRLLFFF 294 (378)
Q Consensus 265 ~tsgAG--P~v~~i~~~~~~~~~v~~~l~~~f 294 (378)
.+|||| |+++++++++..++ +.+.|++.|
T Consensus 349 ~~sGaG~Gg~v~~l~~~~~~~~-~~~~l~~~~ 379 (399)
T 1wuu_A 349 RMTGGGFGGCTVTLLEASAAPH-AMRHIQEHY 379 (399)
T ss_dssp EECSSCSEEEEEEEEEGGGHHH-HHHHHHHHC
T ss_pred eeecCCCccEEEEEEccchHHH-HHHHHHHHh
Confidence 889998 99999998866555 888888776
No 21
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.83 E-value=4e-19 Score=174.30 Aligned_cols=258 Identities=10% Similarity=0.057 Sum_probs=163.5
Q ss_pred cccCCCCeeEEEEecCCCCCeEEECCee--cc---c-CcchHHHHHHHHHHhcccccccccccccccccccccceEEEEe
Q 017031 2 IASASPLIPITSVLPQPLPSVLALTKIE--IS---L-GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASF 75 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~~~~~D~i~lnG~~--~~---~-~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~ 75 (378)
|+.+.+++++.+|.+.. +-+|.-++.. .+ . ..+.++.++..+++++.... ....+++|.++
T Consensus 28 l~~Ai~~~~~v~v~~~~-~~~i~s~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~g------------~~~~g~~i~i~ 94 (337)
T 2pg9_A 28 LIKDIPIYMRAEIAFSD-SYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRG------------QNLRPFSLAIY 94 (337)
T ss_dssp EEEEEEEEEEEEEEECS-SCEEEETTSSSCBCSSCCTTTHHHHHHHHHHHHHHHHTT------------CCCCCEEEEEE
T ss_pred EEEEccccEEEEEEeCC-cEEEecCCCCceeeecCCCCcHHHHHHHHHHHHHHHhcC------------CCCCCEEEEEE
Confidence 44556678888887653 2234332211 11 1 13567778888877653210 01357999999
Q ss_pred cCCCCc---ccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--------C-cchhccccCeEEEec-ccCC---
Q 017031 76 NNFPTA---AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS--------G-SACRSLFGGFVKWIL-GKEG--- 139 (378)
Q Consensus 76 nniP~a---aGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs--------G-sa~rsl~GG~v~~~~-g~~~--- 139 (378)
++||.+ +|||||||.++|++.|++++|+++++.++|.++|.+.+ | |.+.|+|||++.+.. +...
T Consensus 95 s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~ 174 (337)
T 2pg9_A 95 GKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAA 174 (337)
T ss_dssp CCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHH
T ss_pred ccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCEEEEecCChHHhhh
Confidence 999999 99999999999999999999999999999999997642 2 578899999987642 1100
Q ss_pred ------------CCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHH
Q 017031 140 ------------NGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 207 (378)
Q Consensus 140 ------------dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai 207 (378)
...+...++++.+ ++++++++ .+. ...+|.+..+ .++... .+..+.+ ...+..+++.||
T Consensus 175 ~~~~~~~~~~l~~~~~~~~~~l~~~---~~~~lvl~-~~~--~~~~T~~~~~-~~~~~~-~~~~~~~-~~~~~~~~~~aL 245 (337)
T 2pg9_A 175 WLEEENLATVLERDWGFSISQVKPT---LECDFLVG-WTK--EVAVSSHMVQ-QIKQNI-NQNFLTS-SKETVVSLVEAL 245 (337)
T ss_dssp HHHHSCHHHHHHSCCCCEEEECCCC---SCCEEEEE-ECC--CCCCHHHHHH-HHGGGC-CHHHHHH-HHHHHHHHHHHH
T ss_pred hhcccchhhhcccccccceeeecCC---CCceEEEE-ECC--CccchHHHHH-HHHHHH-HHHHHHH-HHHHHHHHHHHH
Confidence 0001134566432 34555543 443 2444444433 333211 1223333 356778899999
Q ss_pred HcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCC--ceeEEEecCcchHHH
Q 017031 208 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATE 285 (378)
Q Consensus 208 ~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAG--P~v~~i~~~~~~~~~ 285 (378)
.++|++.|++++..+...++.... ...+|...++++.++ +.|+. +.+|||| |++++++++++..++
T Consensus 246 ~~~d~~~lg~~m~~~~~~l~~l~~------~v~~p~l~~l~~~a~----~~Ga~--ak~sGaGgGg~vial~~~~~~~~~ 313 (337)
T 2pg9_A 246 EQGKSEKIIEQVEVASKLLEGLST------DIYTPLLRQLKEASQ----DLQAV--AKSSGAGGGDCGIALSFDAQSTKT 313 (337)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCT------TTCCHHHHHHHHTTT----TSSEE--EEECTTCSSSEEEEEECSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcC------cCCCHHHHHHHHHHH----HCCCE--EEEeCCCCccEEEEEECCHHHHHH
Confidence 999999999988554444554320 124455555554443 35764 6678999 999999987654444
Q ss_pred HHHHHHhh
Q 017031 286 LLQRLLFF 293 (378)
Q Consensus 286 v~~~l~~~ 293 (378)
+.+.|++.
T Consensus 314 ~~~~l~~~ 321 (337)
T 2pg9_A 314 LKNRWADL 321 (337)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 77777653
No 22
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=7.5e-20 Score=180.93 Aligned_cols=256 Identities=12% Similarity=0.176 Sum_probs=147.6
Q ss_pred cccCCCCeeEEEEecCCCCCeEEE---C-Ce--ecc--------cCcchHHHHHHHHHHhcccccccccccccccccccc
Q 017031 2 IASASPLIPITSVLPQPLPSVLAL---T-KI--EIS--------LGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQK 67 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~~~~~D~i~l---n-G~--~~~--------~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~ 67 (378)
|..|.+++++..+.+.. ++++.+ + +. +.+ ...+.++.+++.+++.... ..
T Consensus 33 l~~AId~~~~v~i~~~~-d~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~---------------~~ 96 (357)
T 3k85_A 33 LNATINLYAYCTIEETN-SGRIEINAYDAQCCKSYLSMSQLEIDGEASLIKGVYNRIIRDYRL---------------EP 96 (357)
T ss_dssp EEEEEEEEEEEEEEECS-SSEEEEEETTTTEEEEEECCSSCCCCSSSHHHHHHHHHHHHHTTC---------------CC
T ss_pred EEEEEeCcEEEEEEECC-CCeEEEEECCCCceEEEeccccccccchHHHHHHHHHHHHHhcCC---------------CC
Confidence 44566677777887653 344544 1 11 111 1256788898888875431 02
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--------C--cchhccccCeEEEeccc
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGS--------G--SACRSLFGGFVKWILGK 137 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gs--------G--sa~rsl~GG~v~~~~g~ 137 (378)
.+++|.++++||.++|||||||.++|++.|++++++++++.++|.++|.+.+ | |...|+|||++....-
T Consensus 97 ~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~- 175 (357)
T 3k85_A 97 KSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFL- 175 (357)
T ss_dssp CCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEE-
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEe-
Confidence 5899999999999999999999999999999999999999999999998664 4 4556789999864321
Q ss_pred CCCCCCceEEEccCCCCCC----CceEEEEEECCCCCccCchhhhhhhhccch----hHHHHHhhhchHhHHHHHHHHHc
Q 017031 138 EGNGSDSLAVQLVDEEHWN----DLVIIIAVVSSRQKETSSTTGMRESVETSL----LLQHRAKEVVPKRIVQMEEAIQN 209 (378)
Q Consensus 138 ~~dg~ds~~~~i~~~~~wp----~l~~vilvv~~~~k~vsSt~~m~~~~~ts~----~~~~~i~~~~~~~~~~l~~Ai~~ 209 (378)
++......+++.+ .|. ++.++ ++... .+.++++..+..++... .+...+.. +.++..+++.||.+
T Consensus 176 --~~~~~~~~~l~~~-~~~~~~l~~~lv--i~~t~-~~~~a~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~aL~~ 248 (357)
T 3k85_A 176 --QNDLVIVNPLKMK-RWIVDELESSMV--LYFTG-RSRSSAAIINEQKKNTSEGNQTAIEAMHK-IKQSAIDTKLALLK 248 (357)
T ss_dssp --TTTEEEEEEECCC-HHHHHHHHHTEE--EECC----------------------CCTTHHHHH-HHHHHHHHHHHHTT
T ss_pred --CCCceeEEEEecC-hhhhhhcCceEE--EEECC-CcccHHHHHHHHHHHhhcCcHHHHHHHHH-HHHHHHHHHHHHHc
Confidence 1112234555432 111 12333 23332 33444444333221110 00112222 24577889999999
Q ss_pred CCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCCce--eEEEecCcchHHHHH
Q 017031 210 HDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPN--AVLIARNRKIATELL 287 (378)
Q Consensus 210 ~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAGP~--v~~i~~~~~~~~~v~ 287 (378)
+|++.|++++.. .+|......+ ..-+|...++++. .++.|++ ++-+|||||+ ++++++++..++ +.
T Consensus 249 ~d~~~lg~lm~~---~~~~l~~~~~---~vs~p~ld~l~~~----a~~~Ga~-GaklsGaG~gG~vial~~~~~~~~-~~ 316 (357)
T 3k85_A 249 GDVGEFARILGE---GWENKKKMAG---AITNPMIQEAFDV----ATGAGAM-AGKVSGAGGGGFIMFVVEPTRKEE-VV 316 (357)
T ss_dssp TCHHHHHHHHHH---HHHHTTC--------------CCSCT----TTTSCCS-EEEECCCC---CEEEECCHHHHHH-HH
T ss_pred CCHHHHHHHHHH---HHHHHHhcCC---CCCCHHHHHHHHH----HHhcCCe-EeEecccCCCCEEEEEecHHHHHH-HH
Confidence 999999998742 2333221100 0011333323222 2346888 6778899999 888887765555 88
Q ss_pred HHHHhh
Q 017031 288 QRLLFF 293 (378)
Q Consensus 288 ~~l~~~ 293 (378)
+.|++.
T Consensus 317 ~~l~~~ 322 (357)
T 3k85_A 317 RALNNL 322 (357)
T ss_dssp HHHHTS
T ss_pred HHHHHC
Confidence 888754
No 23
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.80 E-value=7.1e-18 Score=167.31 Aligned_cols=263 Identities=12% Similarity=0.057 Sum_probs=165.0
Q ss_pred cccCCCCeeEEEEecCCCCCeEEECCee--cc------c-----CcchHHHHHHHHHHhccccccccccccccccccccc
Q 017031 2 IASASPLIPITSVLPQPLPSVLALTKIE--IS------L-----GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKL 68 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~~~~~D~i~lnG~~--~~------~-----~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 68 (378)
|+.+.+++++..|.+.. +.++...+.. .. . ..+.++.++..+.++..... ....
T Consensus 31 l~~Ai~~~~~v~v~~~~-~~~i~s~~~~~~~~~~~~~~~~~~~~~~~yv~~~i~~~~~~~~~~g------------~~~~ 97 (365)
T 3k17_A 31 ILTAVNRYITLTLEDSE-RNELWIPHYENPVSWPIGGELKPDGEHWTFTAEAINIATTFLKSEG------------IELT 97 (365)
T ss_dssp EEEEEEEEEEEEEEECS-SCEEECTTCSSCBCCCTTSCCCCSCGGGHHHHHHHHHHHHHHHHTT------------CCCC
T ss_pred EEEEccCcEEEEEEECC-CcEEEecCCCcceeeecccCCCCCCChHHHHHHHHHHHHHHHHhcC------------CCCC
Confidence 44566678888887754 2345443311 00 0 12456667776655432210 0135
Q ss_pred ceEEEEecCCCC----cccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------ccC-cchhccccCeEEEec
Q 017031 69 HLHIASFNNFPT----AAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQ--------GSG-SACRSLFGGFVKWIL 135 (378)
Q Consensus 69 ~v~I~s~nniP~----aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~--------gsG-sa~rsl~GG~v~~~~ 135 (378)
+++|.++++||. ++|||||||.++|++.|++++|+++++.++|.++|.+ ++| |.+.|+|||++.+..
T Consensus 98 g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g~~~g~D~~~~~~Gg~~~~~~ 177 (365)
T 3k17_A 98 PVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSCGDIASCMYGGWIAYTT 177 (365)
T ss_dssp CEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEEEC
T ss_pred CEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccHHHHhcCCEEEEec
Confidence 799999999996 6799999999999999999999999999999999964 333 578999999988753
Q ss_pred ccC------CC----------CC-CceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhcc----chhHHHHHhh
Q 017031 136 GKE------GN----------GS-DSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVET----SLLLQHRAKE 194 (378)
Q Consensus 136 g~~------~d----------g~-ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~t----s~~~~~~i~~ 194 (378)
... .+ .+ +...++++.+ ++ +++ ++.+. ...+|.+..+.+... ...+++.+.+
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~---~~-~ll-l~~t~--~~~sT~~~~~~v~~~~~~~~~~~~~~~~~ 250 (365)
T 3k17_A 178 FDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEP---VP-TFS-VGWTG--TPVSTGKLVSQIHAFKQEDSKNYQHFLTR 250 (365)
T ss_dssp CCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCC---SS-EEE-EEECS--CCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCHHHhhhhcccchhhhhhccCCCCcceeeccCC---cc-cEE-EEECC--CccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 210 00 00 1234555422 23 433 43343 244554444332111 1112333333
Q ss_pred hchHhHHHHHHHHHcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCC--ce
Q 017031 195 VVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PN 272 (378)
Q Consensus 195 ~~~~~~~~l~~Ai~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAG--P~ 272 (378)
...+..+++.||.++|++.|++++..+.+.|+.+... +...+.+|...++++..++ .|+. +-++||| ++
T Consensus 251 -~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~l~v~--~~~~is~p~ld~l~~~a~~----~Ga~--ak~sGAGgGg~ 321 (365)
T 3k17_A 251 -NNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTK--AGVNIETSLLKELADSAEN----MGGA--GKSSGSGGGDC 321 (365)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH--HTCCCSCHHHHHHHHHHHH----TTSE--EEECTTCSSSE
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhh--cCCcccCHHHHHHHHHHHh----cCCE--EEecCCCCCCE
Confidence 2456789999999999999999986655666663321 1223355666666666654 5764 6678999 89
Q ss_pred eEEEecCcchHHHHHHHHHhh
Q 017031 273 AVLIARNRKIATELLQRLLFF 293 (378)
Q Consensus 273 v~~i~~~~~~~~~v~~~l~~~ 293 (378)
+++++++++..+++.+.|++.
T Consensus 322 vial~~~~~~~~~l~~~l~~~ 342 (365)
T 3k17_A 322 GIAFSKTKELAEKLVNEWEKL 342 (365)
T ss_dssp EEEEESSHHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHHC
Confidence 999998765445477777753
No 24
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.77 E-value=1.5e-17 Score=165.93 Aligned_cols=197 Identities=15% Similarity=0.187 Sum_probs=124.8
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCC-----CCC-------HHHHHHHHHh---------ccC---cch
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNL-----KEN-------QSQLSAIARQ---------GSG---SAC 123 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l-----~ls-------~~eLs~lAr~---------gsG---sa~ 123 (378)
.+++|.++++||.++|||||||.++|++.|+++++++ +++ ..|+.+|++. |.+ |.+
T Consensus 127 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~D~~ 206 (395)
T 1kvk_A 127 PSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNS 206 (395)
T ss_dssp CCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCcchH
Confidence 5799999999999999999999999999999999999 888 8666666432 433 567
Q ss_pred hccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhc---c-chhHHHHHhhhchHh
Q 017031 124 RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE---T-SLLLQHRAKEVVPKR 199 (378)
Q Consensus 124 rsl~GG~v~~~~g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~---t-s~~~~~~i~~~~~~~ 199 (378)
.|+|||++.+..+ ..++++. .|+++++ ++.+.. +.+|.+..+.... . ...++...+. ....
T Consensus 207 ~~~~Gg~~~~~~~--------~~~~l~~---~~~~~~v-l~~~~~--~~~T~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 271 (395)
T 1kvk_A 207 VSTWGGALRYQQG--------KMSSLKR---LPALQIL-LTNTKV--PRSTKALVAGVRSRLIKFPEIMAPLLTS-IDAI 271 (395)
T ss_dssp HHHHCSEEEESSS--------CEEECSC---CCCEEEE-EEECCC--CCCHHHHHHHHHHHHHHSHHHHHHHHHH-HHHH
T ss_pred HhhhcceEEEcCC--------CceeccC---CCCcEEE-EEECCC--CCchHHHHHHHHHHHHHCHHHHHHHHHH-HHHH
Confidence 7999999986432 2466642 2456654 334432 3444433221111 0 1111111111 1112
Q ss_pred HHHHHHHH-------HcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCC--
Q 017031 200 IVQMEEAI-------QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG-- 270 (378)
Q Consensus 200 ~~~l~~Ai-------~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAG-- 270 (378)
+.++..++ .++|++.|++++..+++.||+.. ..+|...++++.+++ .|+ ++.+||||
T Consensus 272 ~~~~~~~l~~~~~al~~~d~~~lg~lm~~~~~~l~~~~--------~~~p~l~~l~~~a~~----~Ga--ga~~sGaG~G 337 (395)
T 1kvk_A 272 SLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALG--------VGHASLDQLCQVTAA----HGL--HSKLTGAGGG 337 (395)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHT--------CCCHHHHHHHHHHHH----TTC--EEEECSSCSS
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHH----cCC--ceeeccCCCC
Confidence 33333444 44899999999876667777521 235566666666654 576 56678988
Q ss_pred ceeEEEecCcchHHHHHHHHHhhC
Q 017031 271 PNAVLIARNRKIATELLQRLLFFF 294 (378)
Q Consensus 271 P~v~~i~~~~~~~~~v~~~l~~~f 294 (378)
|+++++++++..++ +.+.+.+.|
T Consensus 338 g~v~~l~~~~~~~~-~~~~~~~~~ 360 (395)
T 1kvk_A 338 GCGITLLKPGLERA-KVEAAKQAL 360 (395)
T ss_dssp SEEEEEECTTCCHH-HHHHHHHHH
T ss_pred CEEEEEecCCCCHH-HHHHHHHHH
Confidence 99999998765444 555555443
No 25
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.76 E-value=1.3e-16 Score=154.23 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=160.2
Q ss_pred cccCCCCeeEEEEecCCCCCeEEECCeec--c----cCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEe
Q 017031 2 IASASPLIPITSVLPQPLPSVLALTKIEI--S----LGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASF 75 (378)
Q Consensus 2 ~~~~~~~~~~t~v~~~~~~D~i~lnG~~~--~----~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~ 75 (378)
|+.+.+++++.+|.+.. +.+|+.+.-.. + ...+.++.++..+.++..... ....+++|.+.
T Consensus 26 la~ai~~~~~v~i~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~------------~~~~~~~i~I~ 92 (335)
T 3gon_A 26 LIKDIPIYMRAEIAFSD-SYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRG------------QNLRPFSLAIY 92 (335)
T ss_dssp EEEEEEEEEEEEEEECS-SCEEEETTSSSCBCSSCCTTTHHHHHHHHHHHHHHHHTT------------CCCCCEEEEEE
T ss_pred EEEEecceEEEEEEECC-CCEEEEeCCCcccccCcCCCcHHHHHHHHHHHHHHHHcC------------CCCCceEEEEE
Confidence 45666788888888763 35565433221 1 113455666665555443211 11357889999
Q ss_pred cCCCCc---ccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc--------cC-cchhccccCeEEEecccCC----
Q 017031 76 NNFPTA---AGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQG--------SG-SACRSLFGGFVKWILGKEG---- 139 (378)
Q Consensus 76 nniP~a---aGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~g--------sG-sa~rsl~GG~v~~~~g~~~---- 139 (378)
+++|.+ +|||||||..+|++.|++++++++++.+++.++|... +| |.+.|.|||++.+......
T Consensus 93 s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg~D~a~a~~Gg~i~~~~~~~~~~~~ 172 (335)
T 3gon_A 93 GKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAA 172 (335)
T ss_dssp CCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHH
T ss_pred ecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCCCCcceeecCCeEEEEeCCccccce
Confidence 999987 6999999999999999999999999999999999653 33 5678999999876532100
Q ss_pred ------------CCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhhhhhhccchhHHHHHhhhchHhHHHHHHHH
Q 017031 140 ------------NGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAI 207 (378)
Q Consensus 140 ------------dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m~~~~~ts~~~~~~i~~~~~~~~~~l~~Ai 207 (378)
........++.++ +++++++. .+.. ..+| ..+...+.... .+..+.. ...++.++..+|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~-~~~~--~~~t-~~~v~~v~~~~-~~~~~~~-~~~~~~~~~~aL 243 (335)
T 3gon_A 173 WLEEENLATVLERDWGFSISQVKPT---LECDFLVG-WTKE--VAVS-SHMVQQIKQNI-NQNFLTS-SKETVVSLVEAL 243 (335)
T ss_dssp HHHHSCHHHHHHSCCCCEEEECCCC---SCCEEEEE-ECCC--CCCH-HHHHHHHGGGC-CHHHHHH-HHHHHHHHHHHH
T ss_pred eecccchhheecccccceeEEcCCc---cccceEEe-ecCC--hhhH-HHHHHHHHHHh-HHHHHHH-HHHHHHHHHHHH
Confidence 0011223444432 23444433 3332 3333 33333232211 1222222 356789999999
Q ss_pred HcCCHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCC--ceeEEEecCcchHHH
Q 017031 208 QNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATE 285 (378)
Q Consensus 208 ~~~D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAG--P~v~~i~~~~~~~~~ 285 (378)
+++|++.|+++|..+++.|+.+... ..+|...++++..+ +.|+ ++-++||| +.+++++++++..++
T Consensus 244 ~~~d~~~lg~lm~~~h~~l~~l~~~------is~p~ld~l~~~a~----~~g~--~akltGAG~Ggc~ial~~~~~~~~~ 311 (335)
T 3gon_A 244 EQGKSEKIIEQVEVASKLLEGLSTD------IYTPLLRQLKEASQ----DLQA--VAKSSGAGGGDCGIALSFDAQSTKT 311 (335)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCTT------TCCHHHHHHHHTTT----TSSE--EEEECTTCSSSEEEEEECSHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHhCCCc------CCCHHHHHHHHHHH----hCCc--EEEEccccchheEEEEECCHHHHHH
Confidence 9999999999997666667765332 23455555554443 3564 34566877 678889877665555
Q ss_pred HHHHHHhh
Q 017031 286 LLQRLLFF 293 (378)
Q Consensus 286 v~~~l~~~ 293 (378)
+.++|++.
T Consensus 312 i~~~~~~~ 319 (335)
T 3gon_A 312 LKNRWADL 319 (335)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 77777654
No 26
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.70 E-value=1.8e-15 Score=154.91 Aligned_cols=205 Identities=19% Similarity=0.221 Sum_probs=133.4
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC---------cchhcccc---CeEEEec
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG---------SACRSLFG---GFVKWIL 135 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~~l~ls~~eLs~lAr~gsG---------sa~rsl~G---G~v~~~~ 135 (378)
.+++|.++++||.++|||||||.++|++.|++++++++++.++|.++|.+++. +.+.|+|| |++..+.
T Consensus 148 ~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~f 227 (478)
T 2a2c_A 148 TGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEF 227 (478)
T ss_dssp CCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEET
T ss_pred CceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEEc
Confidence 57999999999999999999999999999999999999999999999987652 34458887 7765442
Q ss_pred ccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchhhh-------h---hhhcc---------------------
Q 017031 136 GKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGM-------R---ESVET--------------------- 184 (378)
Q Consensus 136 g~~~dg~ds~~~~i~~~~~wp~l~~vilvv~~~~k~vsSt~~m-------~---~~~~t--------------------- 184 (378)
. +....+++.+ +++.++|+ -+........|..+ + +.+..
T Consensus 228 ~------~~~~~~~~~~---~~~~~vi~-~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~~~~~~~~~~~~l~d~~~~~~~ 297 (478)
T 2a2c_A 228 S------PLRATDVKLP---SGAVFVIA-NSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGI 297 (478)
T ss_dssp T------TTEEEEECCC---TTEEEEEE-ECCCCCCGGGSSHHHHHHHHHHHHHHHHHHHTTCCTTTCCCHHHHHHHHTC
T ss_pred C------CCceEEecCC---CCcEEEEE-eCCCcccccccchhHHHHHHHHHHHHHHHhhhcccccccchHHhhhhhhcc
Confidence 1 1235555422 24554433 33221111111000 0 00000
Q ss_pred --------------------c----------------------------hhHHHHHhhh--chHhHHHHHHHHHc---CC
Q 017031 185 --------------------S----------------------------LLLQHRAKEV--VPKRIVQMEEAIQN---HD 211 (378)
Q Consensus 185 --------------------s----------------------------~~~~~~i~~~--~~~~~~~l~~Ai~~---~D 211 (378)
. .+++ |..++ -..|+..++.|+.+ +|
T Consensus 298 ~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-ra~h~~~e~~rv~~~~~aL~~~~~~d 376 (478)
T 2a2c_A 298 SLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQ-RAKHVYSEAARVLQFKKICEEAPENM 376 (478)
T ss_dssp CHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTTCCCBCHHH-HHHHHHHHHHHHHHHHHHHHHCCTTH
T ss_pred cHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccccchhHHHHH-HHHHHHHHHHHHHHHHHHHHhccccH
Confidence 0 0011 11111 13467888899999 99
Q ss_pred HHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHHHHHhcCCCeEEEEeCCC--ceeEEEecCcchHHHHHHH
Q 017031 212 FSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQR 289 (378)
Q Consensus 212 ~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~~~~~~G~~~~a~tsgAG--P~v~~i~~~~~~~~~v~~~ 289 (378)
++.|+++| ++.|..+.+-+ ...+|...++++.+++ .|++ ++-++||| ++++++++++..++ +.+.
T Consensus 377 ~~~lg~lm----~~sh~slr~l~---~vs~peld~l~~~a~~----~Ga~-GarltGAG~GG~viaLv~~~~~~~-~~~~ 443 (478)
T 2a2c_A 377 VQLLGELM----NQSHMSCRDMY---ECSCPELDQLVDICRK----FGAQ-GSRLTGAGWGGCTVSMVPADKLPS-FLAN 443 (478)
T ss_dssp HHHHHHHH----HHHHHHHHHTS---CCCCHHHHHHHHHHHH----TTCS-EEEECTTCSSSEEEEEEEGGGHHH-HHHH
T ss_pred HHHHHHHH----HHHHHHHHhcc---cCCCHHHHHHHHHHHh----CCCc-EEEeccCCCccEEEEEEcHHHHHH-HHHH
Confidence 99999987 34666665432 1235666666665553 5887 66677886 99999998766555 8888
Q ss_pred HHhhCCC
Q 017031 290 LLFFFPP 296 (378)
Q Consensus 290 l~~~f~~ 296 (378)
|++.|..
T Consensus 444 l~~~y~~ 450 (478)
T 2a2c_A 444 VHKAYYQ 450 (478)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8876644
No 27
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.24 E-value=3.2e-10 Score=117.08 Aligned_cols=207 Identities=18% Similarity=0.194 Sum_probs=129.8
Q ss_pred cceEEEEecCCCCcccCccchHHHHHHHHHHHHHh---CCCCCHHHHHHHHHhcc---C------cchhccccC---eEE
Q 017031 68 LHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLM---NLKENQSQLSAIARQGS---G------SACRSLFGG---FVK 132 (378)
Q Consensus 68 ~~v~I~s~nniP~aaGLgSSAA~aAAlv~Al~~l~---~l~ls~~eLs~lAr~gs---G------sa~rsl~GG---~v~ 132 (378)
.++.|.+.++||.++|| |||..+|++.|+++++ ++++++.+|.++|.+++ | |-..|+||| ++.
T Consensus 146 ~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~l~ 223 (520)
T 3v2u_C 146 VGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALY 223 (520)
T ss_dssp CCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBEEE
T ss_pred CceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeEEE
Confidence 58999999999999999 8899999999999999 78899999999997654 2 224589997 665
Q ss_pred EecccCCCCCCceEEEccCCC-CCCCceEEEEEECCCC---CccC--ch---------hhhhhh----------------
Q 017031 133 WILGKEGNGSDSLAVQLVDEE-HWNDLVIIIAVVSSRQ---KETS--ST---------TGMRES---------------- 181 (378)
Q Consensus 133 ~~~g~~~dg~ds~~~~i~~~~-~wp~l~~vilvv~~~~---k~vs--St---------~~m~~~---------------- 181 (378)
.+... . -...+++.+. ..+++.++| ++... |... +. .+.+.+
T Consensus 224 id~~~---~--l~~~~v~~p~~~~~~~~~vI--~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~ 296 (520)
T 3v2u_C 224 VEFRP---K--LKATPFKFPQLKNHEISFVI--ANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSN 296 (520)
T ss_dssp EECSS---S--CEEEEECCCCCSSCEEEEEE--EECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSS
T ss_pred EEcCC---C--ceeEEeeCCCccCCCeEEEE--EECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCcccccccccc
Confidence 54321 0 1234443221 113444443 33322 1100 00 000000
Q ss_pred ---------------------------------------------hcc------------------ch------------
Q 017031 182 ---------------------------------------------VET------------------SL------------ 186 (378)
Q Consensus 182 ---------------------------------------------~~t------------------s~------------ 186 (378)
+.. ..
T Consensus 297 ~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~~ 376 (520)
T 3v2u_C 297 SERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVR 376 (520)
T ss_dssp CTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCEE
T ss_pred cccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhccccccc
Confidence 000 00
Q ss_pred ----hHHHHHhhhc--hHhHHHHHHHHHcC-------CHHHHHHHHHhchhhhhhhcccCCCCccccCchHHHHHHHHHH
Q 017031 187 ----LLQHRAKEVV--PKRIVQMEEAIQNH-------DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVER 253 (378)
Q Consensus 187 ----~~~~~i~~~~--~~~~~~l~~Ai~~~-------D~~~~~~l~~~dsn~lha~~~~~~P~~~yl~~~s~~ii~~v~~ 253 (378)
....|..+++ ..|+.++..|+.++ |++.|+++| ++.|..+.+.|- --+|+...+++..+
T Consensus 377 ~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm----~~sH~slr~~~~---vS~peld~lv~~a~- 448 (520)
T 3v2u_C 377 FQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLM----NESQASCDKLYE---CSCIETNQICSIAL- 448 (520)
T ss_dssp ESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH----HHHHHHHHHTSC---CCCHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHH----HHHHHHHHHhcC---CCcHHHHHHHHHHH-
Confidence 0122444432 45888899999997 599999988 457777665431 11344555555444
Q ss_pred HHHhcCCCeEEEEeCCC--ceeEEEe---cCcchHHHHHHHHHhhCCC
Q 017031 254 WNRSVGSPQVAYTFDAG--PNAVLIA---RNRKIATELLQRLLFFFPP 296 (378)
Q Consensus 254 ~~~~~G~~~~a~tsgAG--P~v~~i~---~~~~~~~~v~~~l~~~f~~ 296 (378)
+.|++ ++-++|+| +++++++ +++..++ +.+.+.+.|..
T Consensus 449 ---~~Ga~-GarlTGaG~GGc~iaLv~~~~~~~~~~-~~~~l~~~y~~ 491 (520)
T 3v2u_C 449 ---ANGSF-GSRLTGAGWGGCTIHLVPSGANGNVEQ-VRKALIEKFYN 491 (520)
T ss_dssp ---HTTCS-EEEECSSCSSSEEEEEEEESTTCSHHH-HHHHHHHHTHH
T ss_pred ---hCCCC-EEEEecCCCCceEEEEEcCCCHHHHHH-HHHHHHHHHHh
Confidence 36888 67777998 9999999 6666666 98888877643
No 28
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A
Probab=26.76 E-value=97 Score=27.32 Aligned_cols=82 Identities=13% Similarity=0.117 Sum_probs=43.2
Q ss_pred eeEEEEecCCCC--CeEEECCeecccCcchHHHHHHHHHHhcccccccccccccccccccccceEEEEecCCCCc-ccCc
Q 017031 9 IPITSVLPQPLP--SVLALTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTA-AGLA 85 (378)
Q Consensus 9 ~~~t~v~~~~~~--D~i~lnG~~~~~~~~r~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~a-aGLg 85 (378)
..++.|.+.... -++.+.|...+...++..+++..+++..+. .+....++|.+ |-+ --..
T Consensus 30 ~Iev~v~~s~g~~~p~~~~~G~~~~~~~es~~~v~a~l~~~~g~-------------~~~~~di~vnl----~~g~~~k~ 92 (207)
T 1z0w_A 30 PIIAEVTPSMSKSEGRVIATGRLQEIAREAVMNVSAIIKKYTGR-------------DISNMDVHIQF----VGTYEGVE 92 (207)
T ss_dssp EEEEEEEECC---CCCEECCSTTHHHHHHHHHHHHHHHHHHHCC-------------CGGGEEEEEEE----SSCCTTEE
T ss_pred EEEEEEEecCCCCCCeEEEeCCchhhhHHHHHHHHHHHHHhcCC-------------CCCCceEEEEE----eccccccc
Confidence 455566665433 578888865433345566666666555443 12345566654 444 3445
Q ss_pred cchHHHHHHHHHHHHHhCCCCC
Q 017031 86 SSAAGFACLVFSLAKLMNLKEN 107 (378)
Q Consensus 86 SSAA~aAAlv~Al~~l~~l~ls 107 (378)
+.+++.+-.+.-++.+.+.++.
T Consensus 93 GpsadLaia~AilSa~~~~p~~ 114 (207)
T 1z0w_A 93 GDSASISIATAVISAIEGIPVD 114 (207)
T ss_dssp CCTTBHHHHHHHHHHHHTCCEE
T ss_pred CCcchHHHHHHHHHHcCCCCCC
Confidence 5555554444444555566553
No 29
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=23.97 E-value=1.8e+02 Score=23.65 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCCeEEEEeCCCceeEEEecCcchHHHHHHHHH
Q 017031 250 YVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLL 291 (378)
Q Consensus 250 ~v~~~~~~~G~~~~a~tsgAGP~v~~i~~~~~~~~~v~~~l~ 291 (378)
..+++..+++...-+-.+|+|+.++.+.-+-+.-+.+..+++
T Consensus 61 eaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalk 102 (170)
T 4hhu_A 61 EAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALK 102 (170)
T ss_dssp HHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHH
Confidence 333444455665334458999998887654443332444444
Done!