BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017032
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A48|A Chain A, Saicar Synthase
pdb|2CNQ|A Chain A, Atomic Resolution Structure Of Saicar-Synthase From
Saccharomyces Cerevisiae Complexed With Adp, Aicar,
Succinate
pdb|2CNU|A Chain A, Atomic Resolution Structure Of Saicar-Synthase From
Saccharomyces Cerevisiae Complexed With Aspartic Acid
pdb|2CNV|A Chain A, Saicar-Synthase From Saccharomyces Cerevisiae Complexed
Saicar
pdb|1OBD|A Chain A, Saicar-Synthase Complexed With Atp
Length = 306
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 139/264 (52%), Gaps = 40/264 (15%)
Query: 117 TRGKVRDIY--DGGDYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWF-----DQTR 168
RGKVRDIY D G L+ V TDR SA+D I+ SIP KG +L + S +WF D
Sbjct: 16 ARGKVRDIYEVDAGT-LLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRN 74
Query: 169 H---ITPN--------AVISSP------DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLW 211
H I P A +S P + + K +IP+E +VRG++TGS W
Sbjct: 75 HLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSA----W 130
Query: 212 TVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAE--DHDVPVTPDEIVKLGLMTEAE 269
Y K G P GL ++Q+ P I TP+TKAE +HD ++P + +L + E
Sbjct: 131 KEYVK-TGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENISPAQAAEL--VGEDL 187
Query: 270 FDEASRKALRLFEYGQRVASEHGLILVDTKYEFG-KSSDDSILLIDEVHTPDSSRYWIAH 328
+ A++L+ + A E G+I+ DTK+EFG + I+L+DEV TPDSSR+W
Sbjct: 188 SRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSSRFWNGA 247
Query: 329 SYEERFQSGLEPENVDKEFLRLWF 352
SY + G ++ DK+FLR W
Sbjct: 248 SY----KVGESQDSYDKQFLRDWL 267
>pdb|1OBG|A Chain A, Saicar-Synthase Complexed With Atp
Length = 305
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 139/264 (52%), Gaps = 40/264 (15%)
Query: 117 TRGKVRDIY--DGGDYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWF-----DQTR 168
RGKVRDIY D G L+ V TDR SA+D I+ SIP KG +L + S +WF D
Sbjct: 15 ARGKVRDIYEVDAGT-LLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRN 73
Query: 169 H---ITPN--------AVISSP------DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLW 211
H I P A +S P + + K +IP+E +VRG++TGS W
Sbjct: 74 HLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSA----W 129
Query: 212 TVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAE--DHDVPVTPDEIVKLGLMTEAE 269
Y K G P GL ++Q+ P I TP+TKAE +HD ++P + +L + E
Sbjct: 130 KEYVK-TGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENISPAQAAEL--VGEDL 186
Query: 270 FDEASRKALRLFEYGQRVASEHGLILVDTKYEFG-KSSDDSILLIDEVHTPDSSRYWIAH 328
+ A++L+ + A E G+I+ DTK+EFG + I+L+DEV TPDSSR+W
Sbjct: 187 SRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSSRFWNGA 246
Query: 329 SYEERFQSGLEPENVDKEFLRLWF 352
SY + G ++ DK+FLR W
Sbjct: 247 SY----KVGESQDSYDKQFLRDWL 266
>pdb|3R9R|A Chain A, Structure Of A
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 301
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 133/247 (53%), Gaps = 26/247 (10%)
Query: 119 GKVRDIYDGGD-YLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAVI 176
GKVR++Y D +L+ V TDR SAFD +L + IP KG++L S+++F PN +
Sbjct: 18 GKVRELYRVDDEHLLFVATDRISAFDFVLDTPIPDKGRILTAMSVFFFGLL--TVPNHLA 75
Query: 177 SSPDK---------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALP 227
PD + ++ ++PVE V RG++TGS L G CG+ LP
Sbjct: 76 GPPDDPRIPEEVLGRALLVRRLDMLPVECVARGYLTGS---GLLDYQRTG--AVCGHVLP 130
Query: 228 DGLVKNQKLPANILTPTTKAE--DHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQ 285
GL + +L + TP TKA+ +HD+ V D +GL+ ++ + ++++
Sbjct: 131 QGLGEASRLDPPLFTPATKADIGEHDMNV--DFAAVVGLVGAVRANQLRDETIKIYTRAA 188
Query: 286 RVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDK 345
A G+IL DTK+EFG + +++L DEV TPDSSRYW A Y Q G+ ++ DK
Sbjct: 189 AHALHKGIILADTKFEFGVDIEGNLVLADEVFTPDSSRYWDAAHY----QPGVVQDSFDK 244
Query: 346 EFLRLWF 352
+F+R W
Sbjct: 245 QFVRNWL 251
>pdb|2YWV|A Chain A, Crystal Structure Of Saicar Synthetase From Geobacillus
Kaustophilus
pdb|2YWV|B Chain B, Crystal Structure Of Saicar Synthetase From Geobacillus
Kaustophilus
Length = 244
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 24/219 (10%)
Query: 119 GKVRDIY--DGGDYLVLVTTDRQSAFD-RILASIPFKGQVLNETSLWWFDQTRHI-TPNA 174
GK + IY D D L + D +AF+ A+I KG++ NE S F + R N
Sbjct: 13 GKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLKLREAGIANH 72
Query: 175 VISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQ 234
I + ++ ++IP+E VVR V GS + GL +
Sbjct: 73 FIEKLSPTEQLVRRVTIIPLEVVVRNVVAGSLAKRI------------------GLEEGT 114
Query: 235 KLPANILTPTTKAEDHDVPVT-PDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGL 293
L A ++ K +D P+ D I L L + E + AL + + + +E +
Sbjct: 115 PLEAPLVEFYYKNDDLGDPLLLEDHIFILKLASREEVAALKQAALAVNDVLRLHFAERNV 174
Query: 294 ILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEE 332
L+D K EFG+++D +ILL DE+ +PD+ R W A + E+
Sbjct: 175 RLIDFKLEFGRTADGAILLADEI-SPDTCRLWDAKTNEK 212
>pdb|2YZL|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole-
Succinocarboxamide Synthase With Adp From
Methanocaldococcus Jannaschii
pdb|2Z02|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazolesuccinocarboxamide Synthase
Wit Atp From Methanocaldococcus Jannaschii
pdb|2Z02|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazolesuccinocarboxamide Synthase
Wit Atp From Methanocaldococcus Jannaschii
Length = 242
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 20/143 (13%)
Query: 184 TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTP 243
IAKK +IP+E +VR GS R Y + ++LP I+
Sbjct: 85 MIAKKVEIIPIEVIVRNIAAGSL-----------CRRYP-------FEEGKELPFPIVQF 126
Query: 244 TTKAEDHDVPVTPDEI-VKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEF 302
K +++ P+ ++I V LGL T E ++ AL++ E +++ E G+ILVD K E
Sbjct: 127 DYKNDEYGDPMLNEDIAVALGLATREELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEI 186
Query: 303 GKSSDDSILLIDEVHTPDSSRYW 325
GK + ++L+ DE+ +PD+ R W
Sbjct: 187 GKDREGNLLVADEI-SPDTMRLW 208
>pdb|3U55|A Chain A, Crystal Structure (Type-2) Of Saicar Synthetase From
Pyrococcus Horikoshii Ot3
Length = 238
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 32/222 (14%)
Query: 120 KVRDIYDG---------GDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTR- 168
K+ ++Y+G D L++ D +AFD A KG + + S+ +F
Sbjct: 3 KLMEVYEGKAKKMIPIDDDKLIMEFKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEE 62
Query: 169 HITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPD 228
H I N I +K + P+E VVR V GS L LP+
Sbjct: 63 HGIKTHFIGVAGGNRLIVEKLDMYPLEVVVRNVVAGSLKKRL--------------PLPE 108
Query: 229 GLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRV 287
G +LP I+ K ++ HD + LG+ + E + AL++ E +
Sbjct: 109 G----YELPEPIVELYYKNDELHDPMINYYHAKVLGISLD-EIKKIEEIALKVNEILKDY 163
Query: 288 ASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHS 329
++ G+ILVD K EFGK + I+L DE+ +PD+ R+W A +
Sbjct: 164 LAKKGIILVDFKLEFGKDKNGDIVLADEI-SPDTCRFWDAKT 204
>pdb|3U54|A Chain A, Crystal Structure (Type-1) Of Saicar Synthetase From
Pyrococcus Horikoshii Ot3
pdb|3U54|B Chain B, Crystal Structure (Type-1) Of Saicar Synthetase From
Pyrococcus Horikoshii Ot3
Length = 238
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 96/222 (43%), Gaps = 32/222 (14%)
Query: 120 KVRDIYDG---------GDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQ-TR 168
K+ ++Y+G D L+ D +AFD A KG + + S+ +F
Sbjct: 3 KLXEVYEGKAKKMIPIDDDKLIXEFKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEE 62
Query: 169 HITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPD 228
H I N I +K P+E VVR V GS L LP+
Sbjct: 63 HGIKTHFIGVAGGNRLIVEKLDXYPLEVVVRNVVAGSLKKRL--------------PLPE 108
Query: 229 GLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRV 287
G +LP I+ K ++ HD + LG+ + E + AL++ E +
Sbjct: 109 G----YELPEPIVELYYKNDELHDPXINYYHAKVLGISLD-EIKKIEEIALKVNEILKDY 163
Query: 288 ASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHS 329
++ G+ILVD K EFGK + I+L DE+ +PD+ R+W A +
Sbjct: 164 LAKKGIILVDFKLEFGKDKNGDIVLADEI-SPDTCRFWDAKT 204
>pdb|4JA0|A Chain A, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|B Chain B, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|C Chain C, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|D Chain D, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
Length = 425
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 28/218 (12%)
Query: 119 GKVRDIYDGGD---YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHI-TPN 173
GK + ++D D Y +L+ DR +A D + A + K + N+T+ F+ +
Sbjct: 19 GKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKSAGIKT 78
Query: 174 AVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKN 233
A + + ++KKC +IP+E+V R TGS + N G+ P+G
Sbjct: 79 AFVKIASETAFLSKKCEMIPIEWVTRRLATGS-----FLKRNPGV--------PEGF--- 122
Query: 234 QKLPANILTPTTKAEDHDVPVTPDEIVKLG------LMTEAEFDEASRKALRLFEYGQRV 287
+ P T +HD + ++I+ L+ E D + + +FE ++
Sbjct: 123 RFTPPKQETFFKDDANHDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKA 182
Query: 288 ASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYW 325
+ L+D K EFG ++ SI+L D + + DS R W
Sbjct: 183 WALRDCALIDMKIEFGVDTEGSIVLADVIDS-DSWRLW 219
>pdb|3NUA|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Clostridium Perfringens
pdb|3NUA|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Clostridium Perfringens
Length = 238
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 27/229 (11%)
Query: 110 VPGLKSKTRGKVRDIY--DGGDYLVLVTTDRQSAFD-RILASIPFKGQVLNETSLWWFDQ 166
V L+ GK + IY D D +++ D +AF+ A I KG + NE + F+
Sbjct: 5 VNQLEMLYEGKAKKIYATDKEDMVIVHYKDDATAFNGEKKAQIESKGVLNNEITSLIFEM 64
Query: 167 TRH--ITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGN 224
I + V D++ + KK ++P+E +VR GS L
Sbjct: 65 LNKEGIKTHFVEKLNDRD-QLCKKVEIVPLEVIVRNVAAGSMAKRL-------------- 109
Query: 225 ALPDGLVKNQKLPANILTPTTKAEDHDVPVTPD-EIVKLGLMTEAEFDEASRKALRLFEY 283
GL + +L + + K + P+ D V +G T E ++ ++ E
Sbjct: 110 ----GLEEGYELKTTVFELSYKDDSLGDPLINDYHAVGIGATTFEELNKIYEITAKVNEI 165
Query: 284 GQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEE 332
+ + + L+D K EFG+ + + ILL DE+ +PD+ R+W A + E+
Sbjct: 166 LKEAFKKQNINLIDFKLEFGRYNGE-ILLADEI-SPDTCRFWDATTGEK 212
>pdb|1KUT|A Chain A, Structural Genomics, Protein Tm1243, (Saicar Synthetase)
pdb|1KUT|B Chain B, Structural Genomics, Protein Tm1243, (Saicar Synthetase)
Length = 230
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 93/213 (43%), Gaps = 32/213 (15%)
Query: 119 GKVRDIYDGGDYLVLVTTDRQSAFDRILASI-PFKGQVLNETS--LWWFDQTRHITPNAV 175
GK + + GDY +L D +A D + + KG + ET+ L + + I + V
Sbjct: 5 GKTKIVKVTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILXKYLSEKGIKTHLV 64
Query: 176 ISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQK 235
P + + + P+E VVR GS +R Y G + +
Sbjct: 65 EYIPPRTLKVIP-LKXFPLEVVVRLKKAGSF-----------VRRYGG-------AEGED 105
Query: 236 LPANILTPTTKA-EDHDVPVTPDEIVKLGLMTEAEFDEASRKALR----LFEYGQRVASE 290
LP ++ K E HD V D + LG+ T+ + ++ A++ L E+ +R E
Sbjct: 106 LPVPLVEFFIKDDERHDPXVCVDHLEILGIATKKQAEKXKEAAVKITLALKEFFERANFE 165
Query: 291 HGLILVDTKYEFGKSSDDSILLIDEVHTPDSSR 323
L D KYEFG D +++L DE+ +PD+ R
Sbjct: 166 ----LWDIKYEFGLDKDGNVVLGDEI-SPDTFR 193
>pdb|3KRE|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazole-succinocarboxamide Synthase
From Ehrlichia Chaffeensis At 1.8a Resolution
Length = 263
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 41/221 (18%)
Query: 124 IYDGGDYLVLVT----------TDRQSAFDRILASIPFKGQVLNE--TSLWWFDQTRHIT 171
IY+G ++ T D +AF+ A+I + +LN +S
Sbjct: 28 IYEGKAKIIFATLNPLEVIQHFKDEITAFNNKKAAIIHEKGILNNYISSFLMKKLIDKGI 87
Query: 172 PNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLV 231
IS ++ + KK ++IP+E V+R G+ ++K + G ++
Sbjct: 88 KTHFISLLNQREQLVKKITIIPIEVVIRNLAAGN--------FSKRFQIADGTPFKSPII 139
Query: 232 ----KNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRV 287
KN +L D V+ I+ +T E ++ +L++ +
Sbjct: 140 EFYYKNDELS-------------DPMVSEGHILSFQWLTNQELEKIKILSLKINNILSEL 186
Query: 288 ASEHGLILVDTKYEFGKSSDDS---ILLIDEVHTPDSSRYW 325
G+ LVD K EFGK +D + L DE+ +PD+ R W
Sbjct: 187 FFNVGIKLVDFKLEFGKLHNDEQSDLFLADEI-SPDTCRLW 226
>pdb|2GQS|A Chain A, Saicar Synthetase Complexed With Cair-Mg2+ And Adp
pdb|2GQS|B Chain B, Saicar Synthetase Complexed With Cair-Mg2+ And Adp
Length = 237
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 91/229 (39%), Gaps = 27/229 (11%)
Query: 118 RGKVRDIY--DGGDYLVLVTTDRQSAFDRI-LASIPFKGQVLNETSLWWFDQTRHI-TPN 173
RGK + +Y + D LVL + SA D + KG V N+ + + + P
Sbjct: 9 RGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSKLAEAGIPT 68
Query: 174 AVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKN 233
+ + KK ++PVE VVR GS L +GI L D +KN
Sbjct: 69 QMERLLSDTECLVKKLDMVPVECVVRNRAAGSLVKRLGI--EEGIE--LNPPLFDLFLKN 124
Query: 234 QKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGL 293
+ HD V G +++ + + +++ + GL
Sbjct: 125 DAM-------------HDPMVNESYCETFGWVSKENLARMKELTYKANDVLKKLFDDAGL 171
Query: 294 ILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYE----ERFQSGL 338
ILVD K EFG + ++L DE +PD SR W + E +RF+ L
Sbjct: 172 ILVDFKLEFGLYKGE-VVLGDE-FSPDGSRLWDKETLEKMDKDRFRQSL 218
>pdb|2GQR|A Chain A, Saicar Synthetase Complexed With Adp-Mg2+
pdb|2GQR|B Chain B, Saicar Synthetase Complexed With Adp-Mg2+
Length = 237
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 88/229 (38%), Gaps = 27/229 (11%)
Query: 118 RGKVRDIY--DGGDYLVLVTTDRQSAFDRI-LASIPFKGQVLNETSLWWFDQTRHI-TPN 173
RGK + +Y + D LVL + SA D + KG V N+ + + + P
Sbjct: 9 RGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGXVNNKFNYFIXSKLAEAGIPT 68
Query: 174 AVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKN 233
+ KK +PVE VVR GS L +GI L D +KN
Sbjct: 69 QXERLLSDTECLVKKLDXVPVECVVRNRAAGSLVKRLGI--EEGIE--LNPPLFDLFLKN 124
Query: 234 QKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGL 293
HD V G +++ + + +++ + GL
Sbjct: 125 DAX-------------HDPXVNESYCETFGWVSKENLARXKELTYKANDVLKKLFDDAGL 171
Query: 294 ILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYE----ERFQSGL 338
ILVD K EFG + ++L DE +PD SR W + E +RF+ L
Sbjct: 172 ILVDFKLEFGLYKGE-VVLGDE-FSPDGSRLWDKETLEKXDKDRFRQSL 218
>pdb|2H31|A Chain A, Crystal Structure Of Human Paics, A Bifunctional
Carboxylase And Synthetase In Purine Biosynthesis
Length = 425
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 22/147 (14%)
Query: 185 IAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPT 244
IA +C IP+E+V R TGS + N G++ + P +
Sbjct: 87 IAPQCEXIPIEWVCRRIATGS-----FLKRNPGVKE-----------GYKFYPPKVELFF 130
Query: 245 TKAEDHDVPVTPDEIVKLG------LMTEAEFDEASRKALRLFEYGQRVASEHGLILVDT 298
++D + ++++ L+ + E D S +FE ++ LVD
Sbjct: 131 KDDANNDPQWSEEQLIAAKFCFAGLLIGQTEVDIXSHATQAIFEILEKSWLPQNCTLVDX 190
Query: 299 KYEFGKSSDDSILLIDEVHTPDSSRYW 325
K EFG +++ +V DS R W
Sbjct: 191 KIEFGVDVTTKEIVLADVIDNDSWRLW 217
>pdb|2OT9|A Chain A, Crystal Structure Of Yaeq Protein From Pseudomonas
Syringae
Length = 180
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 275 RKALRL----FEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSR 323
R +RL F Y +++A GL VD + KS DD +L EV PD+ R
Sbjct: 39 RXTVRLLAYAFWYNEQLAFGRGLSDVDEPALWEKSLDDRVLHWIEVGQPDADR 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,985,483
Number of Sequences: 62578
Number of extensions: 444439
Number of successful extensions: 1007
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 16
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)