Query 017032
Match_columns 378
No_of_seqs 155 out of 1156
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:00:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02544 phosphoribosylaminoim 100.0 8E-100 2E-104 753.8 32.2 332 43-378 9-340 (370)
2 PRK12607 phosphoribosylaminoim 100.0 6.7E-88 1.5E-92 658.8 28.6 273 97-378 3-278 (313)
3 PRK13961 phosphoribosylaminoim 100.0 1.6E-83 3.5E-88 624.8 27.9 263 100-378 3-282 (296)
4 cd01414 SAICAR_synt_Sc non-met 100.0 1.8E-82 3.8E-87 613.9 28.0 253 115-378 1-269 (279)
5 PRK13960 phosphoribosylaminoim 100.0 9.3E-78 2E-82 596.2 27.2 270 100-378 6-332 (367)
6 TIGR02735 purC_vibrio phosphor 100.0 1E-75 2.2E-80 581.3 26.5 271 100-378 5-331 (365)
7 PRK13959 phosphoribosylaminoim 100.0 4.1E-72 9E-77 552.7 26.6 245 118-378 1-312 (341)
8 cd01415 SAICAR_synt_PurC bacte 100.0 3.8E-72 8.3E-77 529.0 23.3 211 115-354 1-216 (230)
9 PRK09362 phosphoribosylaminoim 100.0 4E-72 8.6E-77 531.3 23.1 214 112-354 3-221 (238)
10 cd01416 SAICAR_synt_Ade5 Ade5_ 100.0 4.8E-71 1E-75 527.2 23.0 213 113-352 4-229 (252)
11 COG0152 PurC Phosphoribosylami 100.0 2.1E-70 4.5E-75 520.2 20.8 228 113-377 4-236 (247)
12 PF01259 SAICAR_synt: SAICAR s 100.0 1.5E-72 3.3E-77 536.9 5.0 238 113-371 1-248 (248)
13 TIGR00081 purC phosphoribosyla 100.0 8.6E-69 1.9E-73 508.2 23.5 217 112-353 5-226 (237)
14 cd00476 SAICAR_synt 5-aminoimi 100.0 3.2E-68 6.9E-73 502.4 23.6 199 115-331 1-203 (230)
15 KOG2835 Phosphoribosylamidoimi 100.0 5.6E-29 1.2E-33 247.3 6.1 261 111-378 10-333 (373)
16 KOG2835 Phosphoribosylamidoimi 99.0 3.3E-11 7.1E-16 121.0 -2.7 112 231-352 118-234 (373)
17 COG0152 PurC Phosphoribosylami 64.3 12 0.00025 36.9 5.0 113 221-350 112-233 (247)
18 PF01259 SAICAR_synt: SAICAR s 63.2 0.21 4.5E-06 48.6 -7.3 36 224-259 108-143 (248)
19 COG1718 RIO1 Serine/threonine 53.0 68 0.0015 32.1 8.1 80 279-377 174-254 (268)
20 KOG2270 Serine/threonine prote 43.9 62 0.0014 34.6 6.5 41 275-316 268-309 (520)
21 PF13421 Band_7_1: SPFH domain 42.0 47 0.001 31.5 5.0 36 266-301 155-191 (211)
22 PF14398 ATPgrasp_YheCD: YheC/ 38.0 1.9E+02 0.0041 28.0 8.6 54 268-324 185-238 (262)
23 PF12260 PIP49_C: Protein-kina 36.9 64 0.0014 29.7 4.9 46 268-314 56-105 (188)
24 PF07478 Dala_Dala_lig_C: D-al 27.6 1.2E+02 0.0025 28.4 5.0 44 265-316 129-172 (203)
25 PF14468 DUF4427: Protein of u 27.1 81 0.0018 28.3 3.6 33 271-303 4-36 (132)
26 COG0478 RIO-like serine/threon 26.3 82 0.0018 32.0 4.0 39 274-314 205-245 (304)
27 PF14832 Tautomerase_3: Putati 24.4 1.3E+02 0.0029 26.8 4.6 57 273-355 79-135 (136)
28 PRK14645 hypothetical protein; 23.6 2E+02 0.0043 26.2 5.6 34 279-314 10-45 (154)
29 PRK14640 hypothetical protein; 22.6 1.6E+02 0.0036 26.5 4.9 25 276-300 4-28 (152)
30 PRK14631 hypothetical protein; 22.3 1.2E+02 0.0025 28.3 3.9 27 274-300 4-30 (174)
31 PRK14643 hypothetical protein; 21.3 1.9E+02 0.0041 26.7 5.0 30 274-305 5-34 (164)
32 PRK14646 hypothetical protein; 20.9 2.2E+02 0.0047 25.9 5.3 24 277-300 6-29 (155)
33 PF09851 SHOCT: Short C-termin 20.7 1.6E+02 0.0034 19.7 3.3 21 257-277 9-29 (31)
34 PF04380 BMFP: Membrane fusoge 20.5 2.4E+02 0.0052 22.8 5.0 33 256-288 38-70 (79)
35 cd00468 HIT_like HIT family: H 20.4 1.1E+02 0.0024 23.4 2.9 38 255-292 25-62 (86)
36 TIGR01205 D_ala_D_alaTIGR D-al 20.3 2.1E+02 0.0044 27.6 5.4 43 265-316 239-281 (315)
37 PF01361 Tautomerase: Tautomer 20.1 1.8E+02 0.004 21.3 4.0 35 273-322 16-50 (60)
No 1
>PLN02544 phosphoribosylaminoimidazole-succinocarboxamide synthase
Probab=100.00 E-value=8e-100 Score=753.76 Aligned_cols=332 Identities=72% Similarity=1.172 Sum_probs=314.8
Q ss_pred CCCCCCceeeccccccccccccCcccccccccchhhHHhhccchhhhHHhHHHhhhhcccccccccCCCCCCcccccccc
Q 017032 43 NSNNYPRISLSVMSNKNQNQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVR 122 (378)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lyeGKvK 122 (378)
....++..++.++.+.+....++. ..++++.+.+.+++++++++.+++.+|++||++|+|+.++|+|+++|+||||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~lyeGKvK 84 (370)
T PLN02544 9 EFMKPASPSSGVGGASGKFRAQQL----PSPALSLDDLSSSGRRPEVLGAIKEALSNCLTETNLDLTVPGLGSRRRGKVR 84 (370)
T ss_pred cccCCccccccccccccccccccC----CCCCccccccccccccHHHHHHHHHHHHhhhhhccccccCCCCccccccccc
Confidence 334555555666666665555544 6778889999999999999999999999999999999899999999999999
Q ss_pred eeeecCCeEEEEEcCCccccccccCCCCchhHHHHHHHHHHHHhccCCCCCccccCCCCceEEEeccceeeeEEEEeeee
Q 017032 123 DIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFV 202 (378)
Q Consensus 123 dVY~~~d~ll~~fkDriSAfD~~~~~IpgKG~vln~iS~~~Fe~L~~gIpTHfi~~~~~~~~lvkk~~miPlEvVvRn~a 202 (378)
+||+.++.+||+||||+||||+.++.|||||++||+||+|||+++++|||||||+.+++++|+||||+|||||||||||+
T Consensus 85 dvY~~~d~ll~vfkDriSAFD~~~~~IpgKG~vln~iS~~wF~~l~~~IptH~i~~~~~~~mlVkk~~~iPlEvVvR~y~ 164 (370)
T PLN02544 85 DIYDLGDYLVLVTTDRQSAFDRVLASIPFKGQVLNQTSAWWFNNTKHITPNALVSSPDPNVTIAKKCSVFPVEFVVRGYM 164 (370)
T ss_pred eEEecCCeEEEEEeCCcccccccCCCCCChhHHHHHHHHHHHHHhhCcCCcceeccCCCceEEEEEeeeeeEEEEEEeee
Confidence 99999889999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeeccCCCCCCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 017032 203 TGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFE 282 (378)
Q Consensus 203 tGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~ttK~d~~Dp~Is~e~i~~lglvt~ee~~~i~~~al~I~~ 282 (378)
|||++||+|++|++|.+++||++||+|+++|++|++|||||+||+|+||++||+++++++|+++++|+++|+++|++||+
T Consensus 165 tGS~~~slw~~Y~~g~~~~~Gi~lpeGl~eg~kLp~PI~tpstK~d~hD~~Is~~~i~~~g~~~~ee~~~i~~~alki~~ 244 (370)
T PLN02544 165 TGSTSTSLWTVYNKGVRNYCGNDLPDGMVKNQKLPANILTPTTKAADHDVPISPEEIVEEGLMTQEDFDEVSSKALALFA 244 (370)
T ss_pred eccchHHHHHHHhccCcccccccCCCCccccCCCCCCeEEEeeccccCCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCCcccccccchhhhhcCCCCCCCcHHHHHHHHHhcCCCCCCC
Q 017032 283 YGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDE 362 (378)
Q Consensus 283 iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~~~~~DKq~~R~w~~~~~~~~~~~ 362 (378)
+++++|+++||+|||||||||++.+|+|+|+|||+||||||||++++|+.||+.|..|+++||||+|+||+++|++|+++
T Consensus 245 ~l~~~~~~~GiiLvD~K~EFG~d~~G~IvL~DEI~TPDSsR~Wd~~tye~~~~~G~~~~s~DKq~vR~wl~~~~~~~~~~ 324 (370)
T PLN02544 245 FGQEVAAEHGLILVDTKYEFGKDADGTILLIDEVHTPDSSRYWLADSYEERHAAGLEPENIDKEFLRLWFKENCDPYKDE 324 (370)
T ss_pred HHHHHHHHCCCeEEEeeEEeeECCCCcEEEEEeccCCCceeeeecCCccccccCCCCCCCcChHHHHHHHHccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889998
Q ss_pred CCCCCcHHHHHHHhcC
Q 017032 363 VLPDAPEELICELAWR 378 (378)
Q Consensus 363 ~~P~lP~e~v~~~~~r 378 (378)
++|+||+|+|++|++|
T Consensus 325 ~~P~lP~evv~~ts~r 340 (370)
T PLN02544 325 VLPEAPAELVCELSWR 340 (370)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999999986
No 2
>PRK12607 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=100.00 E-value=6.7e-88 Score=658.83 Aligned_cols=273 Identities=55% Similarity=0.983 Sum_probs=259.6
Q ss_pred hhhcccccccccCCCCCCcccccccceeeecCC-eEEEEEcCCccccccccCCCCchhHHHHHHHHHHHHhccCCCCCcc
Q 017032 97 LSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGD-YLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAV 175 (378)
Q Consensus 97 ~~~~~~~~~~~~~~p~l~~lyeGKvKdVY~~~d-~ll~~fkDriSAfD~~~~~IpgKG~vln~iS~~~Fe~L~~gIpTHf 175 (378)
+.++++++++ |+++++|+||||+||++++ .+||+||||+||||++++.|||||++||+||+|||++|+++|||||
T Consensus 3 ~~~~~~~~~~----~~~~~~y~GKvKdvY~~~~~~ll~v~~DriSAfD~~~~~IpgKG~vl~~iS~~wF~~l~~~ip~H~ 78 (313)
T PRK12607 3 LPRTLTEFNF----PELPNVYRGKVRDNYDLPDGRRVMVATDRISAFDRVLPAIPYKGQVLNQTAAFWFEATKDICPNHV 78 (313)
T ss_pred ccccccccCC----CCCchhccccCceEEEcCCCEEEEEEeCCccccCcccCCCCChHHHHHHHHHHHHHHHhccCCcce
Confidence 4567777764 8999999999999999975 8999999999999999889999999999999999999999999999
Q ss_pred ccCCCCceEEEeccceeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeeccCCCC--CCCC
Q 017032 176 ISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED--HDVP 253 (378)
Q Consensus 176 i~~~~~~~~lvkk~~miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~ttK~d~--~Dp~ 253 (378)
|+.+++++|+|++|+|||||||||||+|||+ |++|++|.+++||+.||+|+++|++||+|||||+||+|. |||+
T Consensus 79 i~~~~~~~m~vrk~~~iPiEvIvR~y~~GS~----~kry~~g~~~~~gi~lp~gl~eg~~Lp~Pi~tpstK~d~g~hD~~ 154 (313)
T PRK12607 79 LAVPDPNVVVGKRCEPFPVEMVVRGYLAGST----WRLYKAGKREMYGVTLPDGLRENQKLPEPIITPTTKAEEGGHDEP 154 (313)
T ss_pred ecCCCCceeeeeeeeeeeEEEEEEeeecchh----HHHhhccCCcccCccCCccccccCcCCCCeEeeeecCcccCCCCC
Confidence 9999999999999999999999999999997 999999999999999999999999999999999999996 9999
Q ss_pred CCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCCcccccccchhh
Q 017032 254 VTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEER 333 (378)
Q Consensus 254 Is~e~i~~lglvt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~RlWd~~t~e~r 333 (378)
||+++++++|+++++++++|+++|++||++++++|+++||+|||||||||++.+|+|+|+|||+||||||||++++|+.|
T Consensus 155 Is~~~~~~~~~~~~~~~~~i~~~al~i~~~~~~~~~~~GiiLvD~K~EFG~d~~G~ivL~DEI~TPDssR~W~~~~y~~~ 234 (313)
T PRK12607 155 ISPEEILAQGLLTPEDWDELSKYALALFARGQEMAAERGLILVDTKYEFGKDADGRIVLIDEIHTPDSSRYWYADGYEER 234 (313)
T ss_pred CCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEeeeecCCCcEEEEEeccCCCceeeeeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCcHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhcC
Q 017032 334 FQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWR 378 (378)
Q Consensus 334 fr~g~~~~~~DKq~~R~w~~~~~~~~~~~~~P~lP~e~v~~~~~r 378 (378)
|+.|..|+++|||+||+||.++++.. .+++|+||+|+|++||+|
T Consensus 235 ~~~G~~~~slDKq~~R~wl~~~~~~~-~~~~p~lP~evv~~t~~~ 278 (313)
T PRK12607 235 FAAGEPQEQLDKEFVRQWLIERCGPY-GQEIPEIPDEVIVSVSER 278 (313)
T ss_pred cccCCCccccCHHHHHHHHHhcCCCC-CCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999876422 346799999999999975
No 3
>PRK13961 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=100.00 E-value=1.6e-83 Score=624.82 Aligned_cols=263 Identities=41% Similarity=0.684 Sum_probs=246.1
Q ss_pred cccccccccCCCCCCcccccccceeeecC-CeEEEEEcCCccccccccC-CCCchhHHHHHHHHHHHHhccCCCCCcccc
Q 017032 100 RLSETNLHLTVPGLKSKTRGKVRDIYDGG-DYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHITPNAVIS 177 (378)
Q Consensus 100 ~~~~~~~~~~~p~l~~lyeGKvKdVY~~~-d~ll~~fkDriSAfD~~~~-~IpgKG~vln~iS~~~Fe~L~~gIpTHfi~ 177 (378)
|+++++ +|+|+++|+||||+||+++ +.+|++||||+||||++++ .|||||++||+||+|||++|++|||||||+
T Consensus 3 ~~~~~~----~~~~~~iy~GKvK~vY~~~~~~ll~~~~DriSAfD~~~~~~IpgKG~~l~~iS~~~F~~l~~~IptH~i~ 78 (296)
T PRK13961 3 TLMESD----LPSLPLLGRGKVRDIYAVDDDRLLMVATDRISAFDVILPEPIPDKGRVLTQMSNFWFDKLAHIVPNHLTG 78 (296)
T ss_pred cccccC----CCCCcccccccCceEEEcCCCEEEEEEeCCccccCcccCCCCCCHHHHHHHHHHHHHHHHhccCCcceec
Confidence 455555 5899999999999999985 5899999999999999976 799999999999999999999999999998
Q ss_pred -------------CCCCceEEEeccceeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeec
Q 017032 178 -------------SPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPT 244 (378)
Q Consensus 178 -------------~~~~~~~lvkk~~miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~t 244 (378)
.+++++|+|++|+|||||||||||+|||+ |+||++. +++||+.||+|+++|++||+|||||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~m~vrk~~~iPlEvIvR~y~~GS~----~kry~~~-~~~~g~~lp~gl~eg~~L~~Pi~e~~ 153 (296)
T PRK13961 79 IDVDDVVPADEADQVLGRAVVVKKLKPLPVECVVRGYLTGSG----WKDYQAT-GTVCGIKLPAGLVEASKLPEPIFTPA 153 (296)
T ss_pred cccccccchhhhhccCCceeEEEEccEeeEEEEEecccchhh----HHHhhcc-CcccCccCCCCccccCcCCCCEEeee
Confidence 77899999999999999999999999997 9999884 89999999999999999999999999
Q ss_pred cCCCC--CCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCC
Q 017032 245 TKAED--HDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSS 322 (378)
Q Consensus 245 tK~d~--~Dp~Is~e~i~~lglvt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~ 322 (378)
||+|. |||+||++++.+ +++++|+++|+++|++||++++++|+++||+|||||||||++.+|+|+|+|||+|||||
T Consensus 154 tK~d~~~hDp~Is~~~~~~--~~~~~e~~~i~~~al~v~~~l~~~~~~~GiiLvD~K~EFG~~~~g~iiL~DEI~TPDs~ 231 (296)
T PRK13961 154 TKAELGDHDENISFEEVVE--LVGAELAAQLRDATLAIYKEAADYAATRGIIIADTKFEFGLDEDGTLTLMDEVLTPDSS 231 (296)
T ss_pred ecccccCCCCCCCHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeEEceecCCCcEEEEeeccCCCcc
Confidence 99996 999999999986 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhcCCCCCCCcHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhcC
Q 017032 323 RYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWR 378 (378)
Q Consensus 323 RlWd~~t~e~rfr~g~~~~~~DKq~~R~w~~~~~~~~~~~~~P~lP~e~v~~~~~r 378 (378)
|||++++|+ .|..++++|||+||+||.++ ++.+++++|+||+|+++++++|
T Consensus 232 R~Wd~~~~e----~g~~~~~lDKq~~R~~l~~~-~~~~~~~~p~lP~ei~~~~~~~ 282 (296)
T PRK13961 232 RFWPADSYQ----PGTSQPSFDKQFVRDWLETS-GWDKTAPAPPLPADVIEKTRAK 282 (296)
T ss_pred eeccccccc----cCCcccccCHHHHHHHHHhc-CCCCCCCCCCCCHHHHHHHHHH
Confidence 999999997 48888999999999999984 3335778899999999999875
No 4
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=100.00 E-value=1.8e-82 Score=613.88 Aligned_cols=253 Identities=47% Similarity=0.768 Sum_probs=240.0
Q ss_pred cccccccceeeecCC-eEEEEEcCCccccccccC-CCCchhHHHHHHHHHHHHhccCCCCCccccC-------------C
Q 017032 115 SKTRGKVRDIYDGGD-YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHITPNAVISS-------------P 179 (378)
Q Consensus 115 ~lyeGKvKdVY~~~d-~ll~~fkDriSAfD~~~~-~IpgKG~vln~iS~~~Fe~L~~gIpTHfi~~-------------~ 179 (378)
++|+||||+||++++ .+||+||||+||||+++. .|||||++||+||+|||++|++|||||||+. +
T Consensus 1 ~~y~GKvK~iY~~~~~~ll~~f~DriSafD~~~~~~IpgKG~~l~~iS~~~F~~l~~gIptH~i~~~~~~~~~~~~~~~~ 80 (279)
T cd01414 1 LIYSGKVRDVYDLGDGRLLFVATDRISAFDVILPPDIPGKGEVLTQISAFWFELTEDIIPNHLISTDVEDLPEIKEPEDP 80 (279)
T ss_pred CcccccceEEEEcCCCEEEEEEeCCccccccccCCCCCCHHHHHHHHHHHHHHHHhccCCccEecccccccccccccccC
Confidence 479999999999986 999999999999999964 7999999999999999999999999999999 9
Q ss_pred CCceEEEeccceeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeeccCCCC-CCCCCCHHH
Q 017032 180 DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDE 258 (378)
Q Consensus 180 ~~~~~lvkk~~miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~ttK~d~-~Dp~Is~e~ 258 (378)
+++.|+|++|+|||||||||||+|||+ |+||++|... ||+.||+|+++|++||+|||||+||+|+ |||+||+++
T Consensus 81 ~~~~~~v~k~~~iPlE~IvR~y~~GS~----~~ry~~~~~~-~g~~lp~g~~eg~~L~~Pi~e~~tK~d~~~D~~Is~~~ 155 (279)
T cd01414 81 DGRSMVVKKAKPIPIECIVRGYLTGSG----WKEYQKGGTV-CGIKLPEGLREAQKLPEPIFTPSTKAEEGHDENISFEE 155 (279)
T ss_pred CCceeEEEeeeEEeEEEEEeeeecchh----HHHhhccCcc-ccccCCCCccccCcCCCCEEecccccccCCCCCCCHHH
Confidence 999999999999999999999999997 9999998655 9999999999999999999999999998 999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCCcccccccchhhhhcCC
Q 017032 259 IVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGL 338 (378)
Q Consensus 259 i~~lglvt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~ 338 (378)
+.++ ++++++++|+++|++||++++++|+++||+|||||||||++.+|+|+|+|||+||||||||++++|+ .|.
T Consensus 156 ~~~~--~~~~~~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~~~~g~ivL~DEi~TPDs~R~W~~~~~~----~g~ 229 (279)
T cd01414 156 AVEI--IGAELADELRELALALYERAAEYAAKRGLILADTKFEFGLDENGEIILIDEVLTPDSSRFWPADSYE----PGK 229 (279)
T ss_pred HHHh--cCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeeEeeEcCCCcEEEEEecCCCCcceeeeccccc----cCC
Confidence 9997 9999999999999999999999999999999999999999999999999999999999999999997 388
Q ss_pred CCCCCcHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhcC
Q 017032 339 EPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWR 378 (378)
Q Consensus 339 ~~~~~DKq~~R~w~~~~~~~~~~~~~P~lP~e~v~~~~~r 378 (378)
+++++|||+||+||.+++..+.++++|+||+|+++++|+|
T Consensus 230 ~~~~lDK~~~R~~l~~~~~~~~~~~~p~LP~~vi~~~~~~ 269 (279)
T cd01414 230 EQPSFDKQFVRDWLEASGWDKQDPPPPPLPAEVIEKTSAR 269 (279)
T ss_pred CccccChHHHHHHHHhcCCCcccCCCCCCCHHHHHHHHHH
Confidence 8999999999999999754444478999999999999975
No 5
>PRK13960 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=100.00 E-value=9.3e-78 Score=596.23 Aligned_cols=270 Identities=32% Similarity=0.506 Sum_probs=244.2
Q ss_pred cccccccccCCCCCCcccccccceeeecCC-------------------eEEEEEcCCccccccccC------CCCchhH
Q 017032 100 RLSETNLHLTVPGLKSKTRGKVRDIYDGGD-------------------YLVLVTTDRQSAFDRILA------SIPFKGQ 154 (378)
Q Consensus 100 ~~~~~~~~~~~p~l~~lyeGKvKdVY~~~d-------------------~ll~~fkDriSAfD~~~~------~IpgKG~ 154 (378)
.+.+-|-++.+++-+.+|+||||+||.+++ .+||+||||+||||+++. .|||||+
T Consensus 6 ~~~~~~~~~~~~~~~~vy~GKvr~vY~~~~~~~~~l~~~~~~~~~~~~~l~i~v~~DriSAFD~v~~~~~~~~~IpgKG~ 85 (367)
T PRK13960 6 KVLAVNDDLPIRTDKPVHSGKVRSVYWLTEEDSRRLIKEKGYNVPADAPLAIMVISDRISAFDCIWHGEGGLNGVPGKGA 85 (367)
T ss_pred heeEecCCCCCCCCCccccceeeEEEecCCCCcchhhhccccccCCCCCEEEEEEeCCcccccccccCccCCCCCCchhH
Confidence 344445566788899999999999999865 458999999999999962 4999999
Q ss_pred HHHHHHHHHHHhcc-CCC-CCccccCCCCceEEEeccceeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCccc
Q 017032 155 VLNETSLWWFDQTR-HIT-PNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVK 232 (378)
Q Consensus 155 vln~iS~~~Fe~L~-~gI-pTHfi~~~~~~~~lvkk~~miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~e 232 (378)
+||+||+|||++|+ .|| |||||+.+++++|+|+||+|||||||||||+|||+ |++|++|.+++||+.||+|+++
T Consensus 86 vln~iS~~wF~~l~~~GI~pnH~i~~~~~~~mlVrk~~~iPiEvIvR~y~tGS~----~rry~~g~~~~cGi~LpeGl~~ 161 (367)
T PRK13960 86 ALNAISNHWFKLFKENGLADSHILDIPHPFVWIVQKARPVMIEAICRQYITGSM----WRAYSKGEREFCGITLPEGLEK 161 (367)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceeccCCCceEEEEEeeeeeEEEEEeeeecchh----HHHhcccCccccCcccCccccC
Confidence 99999999999998 477 89999999999999999999999999999999996 9999999999999999999999
Q ss_pred CCCCCCceEeeccCCC---------CCCCCCC----HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeee
Q 017032 233 NQKLPANILTPTTKAE---------DHDVPVT----PDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTK 299 (378)
Q Consensus 233 g~~L~~PivE~ttK~d---------~~Dp~Is----~e~i~~lglvt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~K 299 (378)
+++|++|+|||+||++ .|||+|| .+++.++|+++.+|++.|+++++++|++++++|+++||+|||||
T Consensus 162 ~~~L~epi~tpsTK~~~g~~~~~~e~hD~~Is~~~~~~~i~~~~~~s~~e~~~~~~l~~~v~~~l~~~~~~~GiiLvDtK 241 (367)
T PRK13960 162 DQKLPELLITPSTKGILTGIPGVPEADDVNISRSDIEANYQAFNFSSADDIDLYEKLLKEGFKVISDALAKLDQIFVDTK 241 (367)
T ss_pred CCcCCCceEecccccccccccCccccCCCcCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEee
Confidence 9999999999999996 4999999 66777789999999999999999999999999999999999999
Q ss_pred eEeeec--CCC--cEEEEeeccCCCCCcccccccchhhhhcCCCCCCCcHHHHHHHHHhcCCC----CC-C--------C
Q 017032 300 YEFGKS--SDD--SILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNP----YE-D--------E 362 (378)
Q Consensus 300 lEFG~d--~~G--eIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~~~~~DKq~~R~w~~~~~~~----~~-~--------~ 362 (378)
||||++ .+| +|+|+|||||||||||||+++|+ .|..+++ ||||||+||.+++.. |. + +
T Consensus 242 ~EFG~~~d~~g~~~iiL~DEI~TPDSsR~Wd~~~Y~----~G~~~~~-dKe~vR~wl~~~~~~~~~~~~k~~~~er~~~~ 316 (367)
T PRK13960 242 FEFGYVTDAAGNEKLIYMDEVGTPDSSRIWDGAAYR----DGKIVEN-SKEGFRQFLLNHFPDPDILLNKDRMPEREALA 316 (367)
T ss_pred eECcccccCCCCeeEEEEEecCCCCccccccccccc----CCCCCcc-hHHHHHHHHHhcCCCccccccccccccccccC
Confidence 999974 345 89999999999999999999997 5888899 999999999986321 33 2 4
Q ss_pred CCCCCcHHHHHHHhcC
Q 017032 363 VLPDAPEELICELAWR 378 (378)
Q Consensus 363 ~~P~lP~e~v~~~~~r 378 (378)
++|+||+|+++++|+|
T Consensus 317 ~~p~LP~evv~~~s~~ 332 (367)
T PRK13960 317 RDNALPLEAMMDVSRT 332 (367)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 6899999999999975
No 6
>TIGR02735 purC_vibrio phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio type. Members of this protein family appear to represent a novel form of phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase), significantly different in sequence and gap pattern from a form (see TIGR00081) shared by a broad range of bacteria and eukaryotes. Members of this family are found within the gammaproteobacteria in the genera Vibrio, Shewanella, and Colwellia, and also (reported as a fragment) in the primitive eukarote Guillardia theta.
Probab=100.00 E-value=1e-75 Score=581.35 Aligned_cols=271 Identities=32% Similarity=0.508 Sum_probs=238.7
Q ss_pred cccccccccCCCCCCcccccccceeeecCC-------------------eEEEEEcCCccccccccC------CCCchhH
Q 017032 100 RLSETNLHLTVPGLKSKTRGKVRDIYDGGD-------------------YLVLVTTDRQSAFDRILA------SIPFKGQ 154 (378)
Q Consensus 100 ~~~~~~~~~~~p~l~~lyeGKvKdVY~~~d-------------------~ll~~fkDriSAfD~~~~------~IpgKG~ 154 (378)
.+.+-|-++.+++.+.+|+||||+||.+.+ .+||+||||+||||+++. .|||||+
T Consensus 5 ~~~~~~~~~~~~~~~~v~~gkvr~vy~l~~~~~~~~~~~~~~~~~~d~~~~i~v~sDriSAFD~i~~~~g~l~~IpgKG~ 84 (365)
T TIGR02735 5 QVLAVNDDLPIRTDEPVHSGKVRSVYWLTEEDSRRLIEEKGYPVAHDAPLAIMVISDRISAFDCIWHAEGGLNGVPGKGA 84 (365)
T ss_pred ceeEecCCCCCCCCCCcccceeeeeEecCccchhhhhhhccCcCCCCCCEEEEEEeCCcccccccccCcccCCCCCChhH
Confidence 344445556689999999999999998854 689999999999998853 5999999
Q ss_pred HHHHHHHHHHHhcc-CCC-CCccccCCCCceEEEeccceeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCccc
Q 017032 155 VLNETSLWWFDQTR-HIT-PNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVK 232 (378)
Q Consensus 155 vln~iS~~~Fe~L~-~gI-pTHfi~~~~~~~~lvkk~~miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~e 232 (378)
+||+||+|||++|+ .|| |||||+.+++++|+|+||+|||||||||||+|||+ |++|++|.+++||+.||+|+++
T Consensus 85 vln~IS~~wF~~l~~~GI~pnH~i~~~~~~~mlVkk~~~iPiEvIvR~y~tGS~----~rrY~~g~~~~cGi~LpeGl~~ 160 (365)
T TIGR02735 85 ALNAISNHWFKLFAEAGLAESHILDIPHPFVWIVQKAKPVKIEAICRQYITGSM----WRAYAKGERVFCGIDLPEGLAK 160 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCcceeccCCCCeEEEEEcceeeEEEEEeeeecchh----HHHhcccCCcccCccCCccccC
Confidence 99999999999997 477 99999999999999999999999999999999997 9999999999999999999999
Q ss_pred CCCCCCceEeeccCC--------CC-CCCCCCH----HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeee
Q 017032 233 NQKLPANILTPTTKA--------ED-HDVPVTP----DEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTK 299 (378)
Q Consensus 233 g~~L~~PivE~ttK~--------d~-~Dp~Is~----e~i~~lglvt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~K 299 (378)
+++|++|||||+||+ |+ ||++||+ +++.++|+++.+|++.|++++++||++++++|+++||+|||||
T Consensus 161 ~~~Lpepi~tpstK~~~g~~~g~de~hD~~Is~~~~~~~i~~~~~~~~~ei~~i~~~~~~v~~~l~~~~~~~GiiLvDtK 240 (365)
T TIGR02735 161 DQRLPELLITPSTKGILEGIPGVPAIDDVNITRADIERNWSAFNFEQPEDIDHYERLLREGFAVISDRLSKLGQLFVDTK 240 (365)
T ss_pred CCcCCCCeechhhcccccCccCccccCCCCCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 999999999999998 33 9999999 5566689999999999999999999999999999999999999
Q ss_pred eEeeec--CCC--cEEEEeeccCCCCCcccccccchhhhhcCCCCCCCc---HHHHHHHHHhcC---CCCCC------CC
Q 017032 300 YEFGKS--SDD--SILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVD---KEFLRLWFKDHC---NPYED------EV 363 (378)
Q Consensus 300 lEFG~d--~~G--eIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~~~~~D---Kq~~R~w~~~~~---~~~~~------~~ 363 (378)
||||++ .+| +|+|+|||||||||||||+++|+ .|..+++.+ ||++|+|+.+.+ ++.+. ++
T Consensus 241 ~EFG~~~d~~G~~~IiLiDEI~TPDSsR~Wd~~~Y~----~G~~~~~ske~~rQ~lr~~~~~~~~~~~k~~~~~r~~~~~ 316 (365)
T TIGR02735 241 FEFGYVTDVEGTRKLIYMDEVGTPDSSRIWDAGAYA----QGKIVENSKEGFRQALLNWFPDPDILLNKDRMVERAALAR 316 (365)
T ss_pred eECcccccCCCCeeEEEEEecCCCCccccccccccc----CCCCCccccHHHHHHHHHhhhccCccccccccccccccCC
Confidence 999985 358 99999999999999999999997 488887744 666666664431 21111 36
Q ss_pred CCCCcHHHHHHHhcC
Q 017032 364 LPDAPEELICELAWR 378 (378)
Q Consensus 364 ~P~lP~e~v~~~~~r 378 (378)
+|+||+|++.++|+|
T Consensus 317 ~p~LP~evv~~~s~~ 331 (365)
T TIGR02735 317 DNALPQEMLMDVSET 331 (365)
T ss_pred CCCCCHHHHHHHHHH
Confidence 899999999999975
No 7
>PRK13959 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=100.00 E-value=4.1e-72 Score=552.69 Aligned_cols=245 Identities=27% Similarity=0.356 Sum_probs=224.9
Q ss_pred ccccceeeecCCe-------EEEEEcCCccccc-cccC-CCCchhHHHHHHHHHHHHhccC-CCCCccccCCC-------
Q 017032 118 RGKVRDIYDGGDY-------LVLVTTDRQSAFD-RILA-SIPFKGQVLNETSLWWFDQTRH-ITPNAVISSPD------- 180 (378)
Q Consensus 118 eGKvKdVY~~~d~-------ll~~fkDriSAfD-~~~~-~IpgKG~vln~iS~~~Fe~L~~-gIpTHfi~~~~------- 180 (378)
.||||+||.+++. +||+||||+|||| ++++ .|||||++||+||+|||++|++ |||||||+.++
T Consensus 1 ~GKvkd~Y~~~d~~~~~~~~ll~vfsDriSAFD~~v~~~~IpgKG~~l~~iS~~~Fe~l~~~gI~tH~i~~~~~~~~~~~ 80 (341)
T PRK13959 1 MGSVKDFYVDEEPTETDLGRGRFVFSDRYSVFDWGIMPDEIPDKGASLCTMGAYNFELLEEEGIKTHYIGVVEDGEVVRL 80 (341)
T ss_pred CCCccEEEECCCcccccCCEEEEEEeCCcCCCCccccCCCCCCHhHHHHHHHHHHHHHHHhCCCCcceeccccccccccc
Confidence 4999999999753 9999999999999 8876 7999999999999999999996 99999999887
Q ss_pred ------CceEEEeccc------------------------eeeeEEEEeeee--ecCCcchhhHhhhcCcccc--ccccC
Q 017032 181 ------KNVTIAKKCS------------------------VIPVEFVVRGFV--TGSTDTSLWTVYNKGIRNY--CGNAL 226 (378)
Q Consensus 181 ------~~~~lvkk~~------------------------miPlEvVvRn~a--tGS~~krl~~rY~~G~~~~--~g~~l 226 (378)
++.|+|++|+ |||||||||||+ +||+ |++|++|..+. ||+.+
T Consensus 81 ~~~~~~~r~mlVkk~~v~~~~~~~~~~~~~~~~~~~~~~~~iPlEvIvR~yl~~~gS~----~~r~~~G~v~~~~~Gi~l 156 (341)
T PRK13959 81 AEASEPPNEMAVKLTQVPDLPFEGGSYDYDAYHEAAGENYLIPLEVIFRNYVPVGSSL----RDRIKEGKIKPEDLGLDA 156 (341)
T ss_pred ccccCCCceEEEEEeeccccccccccccccccccccccCcceeEEEEEeeeecCcccH----HHhhhcCcccccccCcCC
Confidence 8999999998 999999999999 7774 88999886544 99999
Q ss_pred CCCcccCCCCCCceEeeccCCCCCCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecC
Q 017032 227 PDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSS 306 (378)
Q Consensus 227 p~Gl~eg~~L~~PivE~ttK~d~~Dp~Is~e~i~~lglvt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~ 306 (378)
|+++++|++||+|||||+||+|.||++||.+++.+++++|++++++|+++|++||++++++|+++||+|||||||||++.
T Consensus 157 ~~~~~eg~kLp~Pi~e~stK~d~~D~~Is~~~~~~l~g~s~~e~~~i~e~al~i~~~l~~~~~~~GiiLvD~K~EFG~d~ 236 (341)
T PRK13959 157 DEWPEEGVKLPEPIVEFSTKYEEQDRYLSRKEADEIAGLSRAEIEELEELALKVDEIITEEAEKRGLIHEDGKIEFALYE 236 (341)
T ss_pred CCCCcccCcCCCCeEEeeecccccCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeeECeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeccCCCCCcccccccchhhhhcCCCCCCCcHHHHHHHHHhc-CC------------CCC---CCCCCCCcHH
Q 017032 307 DDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDH-CN------------PYE---DEVLPDAPEE 370 (378)
Q Consensus 307 ~GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~~~~~DKq~~R~w~~~~-~~------------~~~---~~~~P~lP~e 370 (378)
+|+|+|+|||+|||||||| |+ + +++|||+||+||+++ |. .|+ ++++|+||+|
T Consensus 237 ~g~ivL~DEI~TPDssRf~----y~-----~---~~lDKq~~R~~l~~~~w~~~~~~~~~~~~~~w~~~~~~~~P~LP~e 304 (341)
T PRK13959 237 EREIRVVDVVGTFDENRFS----YE-----G---QELSKEVVRQYYRRTEWVEAVKEAKEEDVADWRSLCEPDPPPLPDE 304 (341)
T ss_pred CCCEEEEEECCCCcccccc----CC-----C---CccCHHHHHHHHHhcCcccchhhhhhccccchhhccCCCCCCCCHH
Confidence 9999999999999999995 43 2 679999999999974 22 343 4578999999
Q ss_pred HHHHHhcC
Q 017032 371 LICELAWR 378 (378)
Q Consensus 371 ~v~~~~~r 378 (378)
+++++|+|
T Consensus 305 vv~~ts~~ 312 (341)
T PRK13959 305 VVEAVSDL 312 (341)
T ss_pred HHHHHHHH
Confidence 99999875
No 8
>cd01415 SAICAR_synt_PurC bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. A subfamily of SAICAR synthetases represented by the Thermotoga maritima (Tm) enzyme and E. coli PurC. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=100.00 E-value=3.8e-72 Score=529.02 Aligned_cols=211 Identities=32% Similarity=0.436 Sum_probs=199.5
Q ss_pred cccccccceeeecCC--eEEEEEcCCccccccccC-CCCchhHHHHHHHHHHHHhccC-CCCCccccCCCCceEEEeccc
Q 017032 115 SKTRGKVRDIYDGGD--YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRH-ITPNAVISSPDKNVTIAKKCS 190 (378)
Q Consensus 115 ~lyeGKvKdVY~~~d--~ll~~fkDriSAfD~~~~-~IpgKG~vln~iS~~~Fe~L~~-gIpTHfi~~~~~~~~lvkk~~ 190 (378)
++|+||||+||++++ .++++||||+||||++++ .|||||+++|+||++||++|++ |||||||+.+++++|+|++|+
T Consensus 1 ~ly~GK~K~vy~~~~~~~l~~~f~D~~tafDg~~~~~i~gKG~~~~~~s~~~F~~L~~~gI~tH~i~~~~~~~~~v~k~~ 80 (230)
T cd01415 1 LLYEGKAKIVYATDDPDVLIVEFKDDATAFNGKKKDTIEGKGVLNNEISALIFKYLEENGIKTHFIEKLSDREQLVKKVE 80 (230)
T ss_pred CcccccceEEEEcCCCCEEEEEEeCCccccCCccCCCCCCHhHHHHHHHHHHHHHHHhCCCCCeeecccCCCEEEEEEcc
Confidence 589999999999874 799999999999999975 7999999999999999999985 999999999999999999999
Q ss_pred eeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeeccCCCC-CCCCCCHHHHHHcCCCCHHH
Q 017032 191 VIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMTEAE 269 (378)
Q Consensus 191 miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~ttK~d~-~Dp~Is~e~i~~lglvt~ee 269 (378)
|||||||||||||||+ |+|| |+++|++|++|+|||+||+|+ |||+||+++++++|++|++|
T Consensus 81 miPlEvIvR~~a~GS~----~~ry--------------~~~eg~~l~~Pive~~~K~d~~~Dp~i~~~~~~~~~~~~~~e 142 (230)
T cd01415 81 IIPLEVVVRNIAAGSL----VKRL--------------GIEEGTVLDPPIVEFYYKNDELGDPLINEDHILALGLATEEE 142 (230)
T ss_pred cccEEEEEeccccccc----Hhhc--------------CCCCCCcCCCCEEEEEecCCCCCCCCCCHHHHHHhCCCCHHH
Confidence 9999999999999998 7777 367889999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCCcccccccchhhhhcCCCCCCCcHHHHH
Q 017032 270 FDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLR 349 (378)
Q Consensus 270 ~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~~~~~DKq~~R 349 (378)
+++|+++|++||++|+++|+++||+|||||||||++.+|+|+|+||| ||||||||++++. +++|||+||
T Consensus 143 ~~~i~~~~l~v~~~l~~~~~~~gl~LvD~K~EFG~~~~g~ivL~DEi-spDs~R~w~~~~~----------~~lDK~~~R 211 (230)
T cd01415 143 LKEIKELALKINEVLSEFFAEIGIILVDFKLEFGRDKDGEIVLADEI-SPDTCRLWDKETG----------EKLDKDRFR 211 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeeEcCCCCEEEEEee-CCCccccccCCCC----------cccCHHHHh
Confidence 99999999999999999999999999999999999999999999999 9999999998643 699999999
Q ss_pred HHHHh
Q 017032 350 LWFKD 354 (378)
Q Consensus 350 ~w~~~ 354 (378)
+|+.+
T Consensus 212 ~~~~~ 216 (230)
T cd01415 212 RDLGD 216 (230)
T ss_pred cccch
Confidence 98654
No 9
>PRK09362 phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed
Probab=100.00 E-value=4e-72 Score=531.27 Aligned_cols=214 Identities=29% Similarity=0.423 Sum_probs=202.1
Q ss_pred CCCcccccccceeeecC--CeEEEEEcCCccccccccC-CCCchhHHHHHHHHHHHHhccC-CCCCccccCCCCceEEEe
Q 017032 112 GLKSKTRGKVRDIYDGG--DYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRH-ITPNAVISSPDKNVTIAK 187 (378)
Q Consensus 112 ~l~~lyeGKvKdVY~~~--d~ll~~fkDriSAfD~~~~-~IpgKG~vln~iS~~~Fe~L~~-gIpTHfi~~~~~~~~lvk 187 (378)
.++++|+||||+||+++ +.+|++||||+||||++++ .|||||+++|+||++||++|++ |||||||+.+++++|+|+
T Consensus 3 ~~~~ly~GK~K~vy~~~~~~~ll~~f~D~isafD~~~~~~i~gKG~~~~~is~~~F~~L~~~GI~tH~i~~~~~~~~lv~ 82 (238)
T PRK09362 3 KKELLYEGKAKIVYSTDDPDLLIVEFKDDATAFNGEKKEQIDGKGVLNNQISSFIFKKLEEAGIPTHFIEKLSDREQLVK 82 (238)
T ss_pred cccccccccceEEEEcCCCCEEEEEEeCCceecCcccCCCCCCHHHHHHHHHHHHHHHHHhCCCCceEecccCCCeEEEE
Confidence 37899999999999984 4799999999999999975 8999999999999999999985 899999999999999999
Q ss_pred ccceeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeeccCCCC-CCCCCCHHHHHHcCCCC
Q 017032 188 KCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMT 266 (378)
Q Consensus 188 k~~miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~ttK~d~-~Dp~Is~e~i~~lglvt 266 (378)
+|+|||||||||||||||+ |+|| |+++|++|++|||||+||+|+ |||+||+++++++|++|
T Consensus 83 k~~~iPiEvIvR~~a~GS~----~~ry--------------g~~eg~~l~~Pive~~~K~d~~~Dp~i~~~~~~~~~~~t 144 (238)
T PRK09362 83 KVEIIPLEVVVRNVAAGSL----VKRL--------------GIEEGTVLPPPIVEFYYKNDALGDPMINEDHILALGWAT 144 (238)
T ss_pred EcceeeEEEEEeeeeceeh----hhhc--------------CCccCCcCCCCeEEEEecCCCCCCCCCCHHHHHHhCCCC
Confidence 9999999999999999998 7777 357899999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCCcccccccchhhhhcCCCCCCCcHH
Q 017032 267 EAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKE 346 (378)
Q Consensus 267 ~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~~~~~DKq 346 (378)
++|+++|+++|++||++|+++|+++||+|||||+|||++.+|+|+|+||| ||||||||++++ ++++|||
T Consensus 145 ~~e~~~i~~~al~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~g~ivL~DEi-spDs~R~W~~~~----------~~~lDK~ 213 (238)
T PRK09362 145 PEELAEIKELALKINDVLKGLFAGAGIRLVDFKLEFGRDKDGEIVLADEI-SPDTCRLWDKET----------NEKLDKD 213 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEeeEcCCCCEEEEEee-CCcccccccCCC----------CcccChH
Confidence 99999999999999999999999999999999999999999999999999 999999999876 3699999
Q ss_pred HHHHHHHh
Q 017032 347 FLRLWFKD 354 (378)
Q Consensus 347 ~~R~w~~~ 354 (378)
+||+++.+
T Consensus 214 ~~R~~~~~ 221 (238)
T PRK09362 214 RFRRDLGG 221 (238)
T ss_pred HHhcccch
Confidence 99998754
No 10
>cd01416 SAICAR_synt_Ade5 Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic group of SAICAR synthetases represented by the Drosophila melanogaster, N-terminal, SAICAR synthetase domain of bifunctional Ade5. The Ade5 gene product (CAIR-SAICARs) catalyzes the sixth and seventh steps of the de novo biosynthesis of purine nucleotides (also reported as seventh and eighth steps). SAICAR synthetase converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=100.00 E-value=4.8e-71 Score=527.22 Aligned_cols=213 Identities=25% Similarity=0.328 Sum_probs=200.3
Q ss_pred CCcccccccceeeecC---CeEEEEEcCCccccccccC-CCCchhHHHHHHHHHHHHhccC-CCCCccccCCCCceEEEe
Q 017032 113 LKSKTRGKVRDIYDGG---DYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRH-ITPNAVISSPDKNVTIAK 187 (378)
Q Consensus 113 l~~lyeGKvKdVY~~~---d~ll~~fkDriSAfD~~~~-~IpgKG~vln~iS~~~Fe~L~~-gIpTHfi~~~~~~~~lvk 187 (378)
++++|+||||+||+++ +.++++||||+||||+++. .|||||+++|+||++||++|++ |||||||+.+++++|+|+
T Consensus 4 ~~~lyeGK~K~iY~~~~~~~~li~~fkD~~sAfd~~~~~~I~gKG~~~~~is~~~F~~L~~~GI~tHfi~~~~~~~~lvk 83 (252)
T cd01416 4 GKKLIEGKTKIVYELPDQPGLVLIQSKDRITAGDGARKDEIEGKAAISNKTTSNVFELLQEAGIKTHFVKQCSPTAFIAR 83 (252)
T ss_pred cccccccCceEEEecCCCCCEEEEEEeCCCcCCCCcccCCCCCHHHHHHHHHHHHHHHHHhCCCCceeecccCCCeEEEE
Confidence 5689999999999963 4799999999999999975 7999999999999999999985 999999999999999999
Q ss_pred ccceeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeeccCCCC-CCCCCCHHHHHHcCC--
Q 017032 188 KCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGL-- 264 (378)
Q Consensus 188 k~~miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~ttK~d~-~Dp~Is~e~i~~lgl-- 264 (378)
+|+|||||||||||||||+ |+||. |+++|++|++|+|||+||+|+ |||+||+++++++||
T Consensus 84 k~~~iPlEvIvR~~a~GS~----~kry~-------------g~~eg~~l~~PivE~~~K~d~~~Dp~I~~~~~~~~~~~~ 146 (252)
T cd01416 84 KCEMIPIEWVCRRIATGSF----LKRNP-------------GVKEGYRFSPPKLEFFYKDDANHDPQWSEEQLLEAKLNC 146 (252)
T ss_pred EeeeeeEEEEEEeeeecch----HhhcC-------------CCCCcccCCCCeeeEEeeCCCCCCCCCCHHHHHHcCCcc
Confidence 9999999999999999997 77772 578899999999999999996 999999999999999
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCC-CcEEEEeeccCCCCCcccccccchhhhhcCCC
Q 017032 265 ----MTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSD-DSILLIDEVHTPDSSRYWIAHSYEERFQSGLE 339 (378)
Q Consensus 265 ----vt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~-GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~ 339 (378)
+|++++++|+++|++||++|+++|+++||+|||||+|||++.+ |+|||+||| ||||||||++++++
T Consensus 147 ~~~~~t~~e~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EFG~~~~~g~ivL~DEi-sPDs~RlW~~~~~~-------- 217 (252)
T cd01416 147 GGLKIGKKEVDIMTKSTIAIFEILEKAWATQDCTLVDMKIEFGVDVTTGEILLADVI-DNDSWRLWPSGDKR-------- 217 (252)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeeEeCCCCeEEEEEEE-CCCceeeeECCCCC--------
Confidence 9999999999999999999999999999999999999999987 999999999 99999999997653
Q ss_pred CCCCcHHHHHHHH
Q 017032 340 PENVDKEFLRLWF 352 (378)
Q Consensus 340 ~~~~DKq~~R~w~ 352 (378)
+++|||+||+|-
T Consensus 218 -~~lDK~~~R~~~ 229 (252)
T cd01416 218 -LMKDKQVYRNLK 229 (252)
T ss_pred -ccCCcHHHhcCc
Confidence 689999999984
No 11
>COG0152 PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.1e-70 Score=520.19 Aligned_cols=228 Identities=34% Similarity=0.519 Sum_probs=211.0
Q ss_pred CCcccccccceeeecCC--eEEEEEcCCccccccccC-CCCchhHHHHHHHHHHHHhccC-CCCCccccCCCCceEEEec
Q 017032 113 LKSKTRGKVRDIYDGGD--YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRH-ITPNAVISSPDKNVTIAKK 188 (378)
Q Consensus 113 l~~lyeGKvKdVY~~~d--~ll~~fkDriSAfD~~~~-~IpgKG~vln~iS~~~Fe~L~~-gIpTHfi~~~~~~~~lvkk 188 (378)
..++|+||||+||+++| .+||+||||+||||+.+. +|||||++||+||++||++|++ ||||||++.+++++++|++
T Consensus 4 ~~~ly~GKaK~vY~~~d~~~li~~f~D~~sAfdg~~~~~i~gKG~~n~~iS~~~F~~L~~~gi~tH~i~~~~~~~~lvkk 83 (247)
T COG0152 4 LRLLYEGKAKDLYETDDPDLLIMEFSDRASAFDGEKKDQIPGKGALNNQISAFIFEKLEEAGIPTHFIELLSDREQLVKK 83 (247)
T ss_pred cccccccccceeeEcCCCCEEEEEEeccceeccccccccCCChhHHHHHHHHHHHHHHHHcCCCcceeeccCCCeEEEEE
Confidence 34899999999999987 499999999999999975 7999999999999999999985 9999999999999999999
Q ss_pred cceeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeeccCCCC-CCCCCCHHHHHHcCCCCH
Q 017032 189 CSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMTE 267 (378)
Q Consensus 189 ~~miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~ttK~d~-~Dp~Is~e~i~~lglvt~ 267 (378)
++|||||||||||+|||+ |+||+. .+|+.++.|++|+.+|+|+ +||.+|++++..+|++++
T Consensus 84 ~~iiPlEvVvRn~~aGS~----~kr~~~--------------~eg~~~~~~l~e~~~k~d~l~dPiv~d~~i~~~~~~~~ 145 (247)
T COG0152 84 LEIIPLEVVVRNYAAGSL----LKRYGI--------------EEGTVLGIPLVEFLYKNDELPDPIVTDEHISALGIATP 145 (247)
T ss_pred eeEEeEEEEEeceecchh----HHHhcc--------------ccceECCCCCccccccchhcCCCccchhhcchhccCCH
Confidence 999999999999999997 677753 4666788899999999998 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCCcccccccchhhhhcCCCCCCCcHHH
Q 017032 268 AEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEF 347 (378)
Q Consensus 268 ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~~~~~DKq~ 347 (378)
+|+++|+++|++||++|+++|+++||+|||||||||++.+|+|+|+||| +||||||||+++|+ .+||||+
T Consensus 146 ee~~~i~~~alkin~~l~~~~~~~GiilvD~KlEFG~d~~g~iiLaDEi-sPDs~R~Wd~~t~~---------~~~DKd~ 215 (247)
T COG0152 146 EEIEEIKELALKINEVLKDLFAKRGIILVDFKLEFGLDEDGEIVLADEI-SPDSCRLWDAETYE---------KSLDKDF 215 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeeEEeeEcCCCCEEEEeee-CCCccccccccccc---------cccchHH
Confidence 9999999999999999999999999999999999999999999999999 69999999999995 2799999
Q ss_pred HHHHHHhcCCCCCCCCCCCCcHHHHHHHhc
Q 017032 348 LRLWFKDHCNPYEDEVLPDAPEELICELAW 377 (378)
Q Consensus 348 ~R~w~~~~~~~~~~~~~P~lP~e~v~~~~~ 377 (378)
||+++. .+|++|+|+++.++.
T Consensus 216 ~R~~~g---------~~~~~y~ev~~r~~~ 236 (247)
T COG0152 216 FRRDLG---------DLPELYEEVLERLSD 236 (247)
T ss_pred HhhcCC---------CccccHHHHHHHHHH
Confidence 998321 589999999998864
No 12
>PF01259 SAICAR_synt: SAICAR synthetase; InterPro: IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase (6.3.2.6 from EC) (SAICAR synthetase) catalyzes the seventh step in the de novo purine biosynthetic pathway; the ATP-dependent conversion of 5'-phosphoribosyl-5-aminoimidazole-4-carboxylic acid and aspartic acid to SAICAR []. In bacteria (purC), fungi (ADE1) and plants (Pur7), SAICAR synthetase is a monofunctional protein; in animals it is the N-terminal domain of a bifunctional enzyme that also catalyse phosphoribosylaminoimidazole carboxylase (AIRC) activity (see IPR000031 from INTERPRO).; GO: 0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity, 0006164 purine nucleotide biosynthetic process; PDB: 2GQS_A 2GQR_B 3KRE_A 3R9R_A 2H31_A 1A48_A 1OBD_A 2CNV_A 1OBG_A 2CNU_A ....
Probab=100.00 E-value=1.5e-72 Score=536.88 Aligned_cols=238 Identities=39% Similarity=0.691 Sum_probs=205.0
Q ss_pred CCcccccccceeeecCC-eEEEEEcCCccccccccC-CCCchhHHHHHHHHHHHHhccCCCCCccccCCCCceEEEeccc
Q 017032 113 LKSKTRGKVRDIYDGGD-YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCS 190 (378)
Q Consensus 113 l~~lyeGKvKdVY~~~d-~ll~~fkDriSAfD~~~~-~IpgKG~vln~iS~~~Fe~L~~gIpTHfi~~~~~~~~lvkk~~ 190 (378)
+++||+||||+||++++ .+||+||||+||||++++ .|||||+++|+||++||++|++.|||||++.+++++|+|++|+
T Consensus 1 ~~~ly~GK~K~vY~~~d~~l~~~~~D~isafD~~~~~~IpgKG~~~~~is~~~F~~L~~~I~tHfi~~~~~~~~lv~k~~ 80 (248)
T PF01259_consen 1 LKLLYEGKVKDVYETDDDTLLLVFKDRISAFDGVKPDTIPGKGELLNQISAFWFELLEDIIPTHFIERLDPREMLVRKCE 80 (248)
T ss_dssp CEEEEE-SSEEEEEESSTEEEEEE-SEEEETTTTEEEE-TTHHHHHHHHHHHHHHHHHHTSEBSEEEEESSSEEEEE-EE
T ss_pred CCccccCCCeEEEEcCCCEEEEEEccCCccccccccCCCCchhHHHHHHHHHHHHHHhhhCCccccccCCCceEEEEecc
Confidence 36899999999999997 999999999999999976 7999999999999999999985599999999999999999999
Q ss_pred eeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeeccCCCC-CCCCCCHH-HHHHcCCCCH-
Q 017032 191 VIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPD-EIVKLGLMTE- 267 (378)
Q Consensus 191 miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~ttK~d~-~Dp~Is~e-~i~~lglvt~- 267 (378)
|||||||||||||||+ |+||+.| .++|.+|++|++|+++|+|. +||.++.+ +++.+++++.
T Consensus 81 ~iPlEvIvR~~a~GS~----~~ry~~G------------~~~G~~l~~p~~e~~~k~d~l~dP~~k~e~~~~~l~~~~~~ 144 (248)
T PF01259_consen 81 MIPLEVIVRNYATGSF----WRRYEPG------------VEEGIKLPPPLVEFFYKDDPLFDPLTKEEEHDEALGIASAQ 144 (248)
T ss_dssp E-SEEEEEEEEE-HHH----HHHHHHT------------EETTEEEEEEEEEEEEEEGGGTS-EE-HHSHHHHTTSSHHH
T ss_pred ccceeEEEeeeeccee----eecccCC------------cccCcccCCchhhhcccCCCCCCCcccchhhhhhcchhhhh
Confidence 9999999999999996 8999664 45677799999999999998 99999999 9999999777
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCCcccccccchhhhhcCCCCCC
Q 017032 268 -----AEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPEN 342 (378)
Q Consensus 268 -----ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~~~~ 342 (378)
+|+++|+++|++||++|+++|+++||+|||||+|||++.+|+|||+|||+||||||||+.++|+ .|..+++
T Consensus 145 ~~i~~~e~~~i~~~a~~i~~~l~~~~~~~Gl~LvD~K~EFG~~~~G~ivL~DEi~TpDs~Rlw~~~~~e----~g~~~~~ 220 (248)
T PF01259_consen 145 EIIGEEELEEIREIALKINEILEEYFAKRGLILVDFKLEFGRDEDGEIVLADEISTPDSSRLWDKETYE----KGENQES 220 (248)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEETTTEEEEES--SSTTTEEEEETTT------BTS----
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeeeEEEEecCCCcEEEEEEecCCCceeEEEcCCCc----ccccccc
Confidence 9999999999999999999999999999999999999999999999999889999999999998 5888899
Q ss_pred CcHHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 017032 343 VDKEFLRLWFKDHCNPYEDEVLPDAPEEL 371 (378)
Q Consensus 343 ~DKq~~R~w~~~~~~~~~~~~~P~lP~e~ 371 (378)
+|||+||+|+.+.+..|++ +.|.||+++
T Consensus 221 lDK~~~R~~l~~~~~~y~~-v~~~l~~~~ 248 (248)
T PF01259_consen 221 LDKDFFRDWLGDLGEAYEE-VLPRLPEDI 248 (248)
T ss_dssp TSTHHHHTTHSCHHHHHHH-HHHHHTHHH
T ss_pred cccccccccccccchhhHH-HHhhcccCC
Confidence 9999999999988766663 467777764
No 13
>TIGR00081 purC phosphoribosylaminoimidazole-succinocarboxamide synthase. Check length. Longer versions may be multifunctional enzymes.
Probab=100.00 E-value=8.6e-69 Score=508.16 Aligned_cols=217 Identities=31% Similarity=0.475 Sum_probs=200.6
Q ss_pred CCCcccccccceeeecCC--eEEEEEcCCccccccccC-CCCchhHHHHHHHHHHHHhccC-CCCCccccCCCCceEEEe
Q 017032 112 GLKSKTRGKVRDIYDGGD--YLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRH-ITPNAVISSPDKNVTIAK 187 (378)
Q Consensus 112 ~l~~lyeGKvKdVY~~~d--~ll~~fkDriSAfD~~~~-~IpgKG~vln~iS~~~Fe~L~~-gIpTHfi~~~~~~~~lvk 187 (378)
.|+++|+||||+||++++ .++++||||+||||++++ .|||||++||+||++||++|++ |||||||+.+++++|+|+
T Consensus 5 ~~~~ly~GK~K~vy~~~~~~~li~~f~D~~tafdg~~~~~i~gKG~~~~~is~~~F~~L~~~GI~tH~i~~~~~~~~lv~ 84 (237)
T TIGR00081 5 KRQKLYSGKAKDIYETDDPDLLRFVFRDDISAFDGEKKDQIPGKGRLNTKISAFIFEKLEEAGIPTHYIDLIEDREMLVK 84 (237)
T ss_pred cccccccccceEEEECCCCCEEEEEEeCCccccCcccCCCCCCHHHHHHHHHHHHHHHHHhCCCCcceecccCCCEEEEE
Confidence 378999999999999864 566999999999999976 7999999999999999999985 999999999999999999
Q ss_pred ccceeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeeccCCCC-CCCCCCHHHHHHcCCCC
Q 017032 188 KCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMT 266 (378)
Q Consensus 188 k~~miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~ttK~d~-~Dp~Is~e~i~~lglvt 266 (378)
+|+|||||||||||||||+ |+|| ++.+|.+|++|++||++|+|+ |||.||.+++.++|++|
T Consensus 85 k~~~iPlEvIvR~~a~GS~----~rr~--------------~~~eG~~~~~pl~E~~~k~d~~~Dp~i~~~~~~~~~~~~ 146 (237)
T TIGR00081 85 KLDIIPLEVIVRNIAAGSL----LKRL--------------GIPEGLELEQPLVEFIFKPDEVGDPMLNESYAEALGLAT 146 (237)
T ss_pred EcceecEEEEEeccccccc----eecc--------------CCCCCCcCCCCccceEEcccccCCCCCCHhHHHHhccCC
Confidence 9999999999999999998 4554 244566799999999999998 79999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCCcccccccchhhhhcCCCCCCCcHH
Q 017032 267 EAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKE 346 (378)
Q Consensus 267 ~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~~~~~DKq 346 (378)
++|+++|+++|++||++|+++|+++||+|||||+|||++.+|+|+|+||| ||||||||++++|+. | ++++|||
T Consensus 147 ~~e~~~i~~~a~~v~~~l~~~~~~~gl~LvD~K~EFG~~~~g~ivL~DEI-sPDs~R~w~~~~~~~----g--~p~ldkd 219 (237)
T TIGR00081 147 EEELERIKELALKVNEVLKKYFDEKGIILVDFKLEFGLDEEGNLILADEV-SPDTCRLWDKETYEV----G--APKLDKD 219 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeeEcCCCCEEEEEEE-cCcceeecccccCCc----C--CCCCCHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999873 4 6789999
Q ss_pred HHHHHHH
Q 017032 347 FLRLWFK 353 (378)
Q Consensus 347 ~~R~w~~ 353 (378)
.+|.-..
T Consensus 220 v~r~~~~ 226 (237)
T TIGR00081 220 IFRRTLG 226 (237)
T ss_pred HHHhhHH
Confidence 9997543
No 14
>cd00476 SAICAR_synt 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. SAICAR synthetase (the PurC gene product) catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=100.00 E-value=3.2e-68 Score=502.44 Aligned_cols=199 Identities=28% Similarity=0.417 Sum_probs=190.1
Q ss_pred cccccccceeeecC-CeEEEEEcCCccccccccC-CCCchhHHHHHHHHHHHHhccC-CCCCccccCCCCceEEEeccce
Q 017032 115 SKTRGKVRDIYDGG-DYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRH-ITPNAVISSPDKNVTIAKKCSV 191 (378)
Q Consensus 115 ~lyeGKvKdVY~~~-d~ll~~fkDriSAfD~~~~-~IpgKG~vln~iS~~~Fe~L~~-gIpTHfi~~~~~~~~lvkk~~m 191 (378)
.+|+||||+||+++ +.++|+||||+||||++++ .|||||+++|+||++||++|++ ||||||++.+++++|+|++|+|
T Consensus 1 ~ly~GK~K~vy~~~~~~l~~~f~D~isafd~~~~~~i~gKG~~~~~is~~~F~~L~~~gI~tH~i~~~~~~~~~v~k~~m 80 (230)
T cd00476 1 TLYRGKTKIVYETKDGVLLLEFKDDISAGDGARRNFLDEKGDITAKLTLFIFKYLSEAGIPTHFVERLGPRTLLVDKLKX 80 (230)
T ss_pred CCcCccCceEEEcCCCEEEEEEeCcccccCcccCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeeeeecCCCEEEEEecCc
Confidence 47999999999987 4899999999999999975 7999999999999999999986 9999999999999999999999
Q ss_pred eeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeeccCCCC-CCCCCCHHHHHHcCCCCHHHH
Q 017032 192 IPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMTEAEF 270 (378)
Q Consensus 192 iPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~ttK~d~-~Dp~Is~e~i~~lglvt~ee~ 270 (378)
||||||||||||||+ |+|| + |+++|++|++|+|||+||+|+ |||+||+++++++|++|++|+
T Consensus 81 iPlEvIvR~~a~GS~----~rry--~-----------g~~eg~~l~~Pive~~~K~d~~~Dp~i~~~~~~~~~~~~~~e~ 143 (230)
T cd00476 81 IPLEVVVRNRATGSF----VKRY--G-----------GFKEGREFPPPLVEFFYKDDAEHDPIVSEDQLERLGFIGKVDV 143 (230)
T ss_pred ccEEEEEeeeeccch----hhhc--C-----------CCCCCCcCCCCEEEeeccCccCCCCCCCHHHHHHhcCCCHHHH
Confidence 999999999999997 7777 1 578999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCCcccccccch
Q 017032 271 DEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYE 331 (378)
Q Consensus 271 ~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~RlWd~~t~e 331 (378)
++|+++|++||++|+++|+++||+|||||+|||++.+|+|||+||| +|||||||++++|+
T Consensus 144 ~~i~~~al~v~~~l~~~~~~~gl~LvD~K~EFG~~~~g~ivL~DEi-~pDs~R~w~~~~~~ 203 (230)
T cd00476 144 ERXKELAVKINTVLKKLFSPAGLELWDFKLEFGLDEEGEIVLGDEI-SPDSSRLWRKGGEP 203 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeEecCCCCEEEEEEE-CCCceeeccCcccc
Confidence 9999999999999999999999999999999999999999999999 69999999999874
No 15
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=99.95 E-value=5.6e-29 Score=247.27 Aligned_cols=261 Identities=26% Similarity=0.255 Sum_probs=205.9
Q ss_pred CCCCcccccccceeeecC---CeEEEEEcCCccccccccC-CCCchhHHHHHHHHHHHHhcc-CCCCCccccCCCCceEE
Q 017032 111 PGLKSKTRGKVRDIYDGG---DYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTR-HITPNAVISSPDKNVTI 185 (378)
Q Consensus 111 p~l~~lyeGKvKdVY~~~---d~ll~~fkDriSAfD~~~~-~IpgKG~vln~iS~~~Fe~L~-~gIpTHfi~~~~~~~~l 185 (378)
|=.+.+++||||++|+.. +.+++..||+|+|||.++. .|++||++++++|.+||+.|. .|++|+|.+.+.++.+.
T Consensus 10 ~~~k~la~gkvr~v~~~~~~~~~vlti~kD~I~a~~~~~a~~I~~ka~il~k~t~~~F~~l~~~gv~~~~~~~~~~t~~~ 89 (373)
T KOG2835|consen 10 PLGKELAEGKVRDVYELVDSPGLVLTISKDRITALDAAMANSIQGKAAILNKITSFVFELLGEAGIETAFTEQCGETAFE 89 (373)
T ss_pred chhhhhheeeeeeecccccCCCeeEEeeccccchhhhhhhcchhhHHHHHHHhhhhhHhhhhhhhhheeeccccchhhhh
Confidence 446789999999999885 3788999999999999974 899999999999999999997 59999999998888777
Q ss_pred EeccceeeeEEEEeeeeecCCcchh---------------------hHhhhcCcccccc-----ccCCCCcccCCCCCCc
Q 017032 186 AKKCSVIPVEFVVRGFVTGSTDTSL---------------------WTVYNKGIRNYCG-----NALPDGLVKNQKLPAN 239 (378)
Q Consensus 186 vkk~~miPlEvVvRn~atGS~~krl---------------------~~rY~~G~~~~~g-----~~lp~Gl~eg~~L~~P 239 (378)
+++|.|+|+||++|..++|||.|++ |.-|.....++|+ +-.++++.++++++.+
T Consensus 90 ~~p~~~~~~~~v~~~~~ts~f~k~~~~vp~~~~~~~~~~~S~~k~~a~~~n~~g~e~~~~~~~~li~r~~~~~~~~~~~~ 169 (373)
T KOG2835|consen 90 ARPCPMTPIEWVTRRCATSSFEKKNPGVPEGYRFRGYKTESTFKDDANMDNVWGDEQIIDCAGLLIGRDEVKIMQKLPLY 169 (373)
T ss_pred cCCCCCCCceeEEeecchhhHHHhCccCccceeecCccccccccchhhcCcccchhhhhhhhhhhcchhhcccccccccc
Confidence 8877777777776666666665543 3333333333443 4557788888888888
Q ss_pred eEeeccCCC--CCCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCC-c-EEEEee
Q 017032 240 ILTPTTKAE--DHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDD-S-ILLIDE 315 (378)
Q Consensus 240 ivE~ttK~d--~~Dp~Is~e~i~~lglvt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~G-e-IvLaDE 315 (378)
+| .++|.. .||..|++..+..- +...+.+.+.+.....|...+-.....|.+++|.|+|||.++.. + ++|+||
T Consensus 170 if-es~k~~~~~h~~~I~d~~ie~g--v~~~~~~~~~a~~v~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~~ilv~~ 246 (373)
T KOG2835|consen 170 IF-ESLKAAWAGHNCAISDMKIEFG--VDVTLGEIVLASDVIDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEGLILVDE 246 (373)
T ss_pred hh-hhhhhhhcCCccccccchhhhc--cchhhhhhhhhhcccchhheEEcccCCcceeeeeeEEeccccCCccceEEEee
Confidence 88 677763 48888888887763 33444455555577778888888888899999999999988544 3 799999
Q ss_pred ccCCCCCc-----------ccccccchhhhhcCCCCCCCcHHHHHHHHHhcCCCCCC-----------------CCCCCC
Q 017032 316 VHTPDSSR-----------YWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYED-----------------EVLPDA 367 (378)
Q Consensus 316 I~TPDS~R-----------lWd~~t~e~rfr~g~~~~~~DKq~~R~w~~~~~~~~~~-----------------~~~P~l 367 (378)
++|||++| ||-+..|+ .|..|.++||||.|.|+...+..+.+ .+.+..
T Consensus 247 ~~t~~msr~a~~a~~~~~~~~iaga~~----~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~~~~~~v~v~~ 322 (373)
T KOG2835|consen 247 NTTPVMSRYATSAKSRGVVLWIAGAYK----AGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIVQMPNGVPVATVAVNN 322 (373)
T ss_pred cCchhHhhhhhhcccCceEEEEeccCC----CCCChhhHHhhccccCcceeeeecccccccccceeccCCccccccccCC
Confidence 99999999 99999997 48889999999999999776544442 367788
Q ss_pred cHHHHHHHhcC
Q 017032 368 PEELICELAWR 378 (378)
Q Consensus 368 P~e~v~~~~~r 378 (378)
|++.+..++++
T Consensus 323 p~~aa~~aar~ 333 (373)
T KOG2835|consen 323 PENAALLAARI 333 (373)
T ss_pred HHHHHHHHHHH
Confidence 99999988763
No 16
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=98.98 E-value=3.3e-11 Score=120.98 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=93.8
Q ss_pred ccCCCCCCceEeeccCCCC-CCCCCCHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecC-
Q 017032 231 VKNQKLPANILTPTTKAED-HDVPVTPDEIVKLG--LMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSS- 306 (378)
Q Consensus 231 ~eg~~L~~PivE~ttK~d~-~Dp~Is~e~i~~lg--lvt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~- 306 (378)
.++.++-.+..+-+.|++. +|+.+.++++.... ++.++++..+.+..+-+|+.+++.|+.++..|+|.|+|||++.
T Consensus 118 p~~~~~~~~~~~S~~k~~a~~~n~~g~e~~~~~~~~li~r~~~~~~~~~~~~ifes~k~~~~~h~~~I~d~~ie~gv~~~ 197 (373)
T KOG2835|consen 118 PEGYRFRGYKTESTFKDDANMDNVWGDEQIIDCAGLLIGRDEVKIMQKLPLYIFESLKAAWAGHNCAISDMKIEFGVDVT 197 (373)
T ss_pred ccceeecCccccccccchhhcCcccchhhhhhhhhhhcchhhcccccccccchhhhhhhhhcCCccccccchhhhccchh
Confidence 3344466777777788887 89999999996332 5788999999999999999999999999999999999999986
Q ss_pred CCcEEEE-eeccCCCCCcccccccchhhhhcCCCCCCCcHHHHHHHH
Q 017032 307 DDSILLI-DEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWF 352 (378)
Q Consensus 307 ~GeIvLa-DEI~TPDS~RlWd~~t~e~rfr~g~~~~~~DKq~~R~w~ 352 (378)
.++++++ |++ ..|+||.|+.++. +.+.||+++++-.
T Consensus 198 ~~~~~~a~~v~-~~~~~r~~~~~d~---------~im~D~~~~~d~~ 234 (373)
T KOG2835|consen 198 LGEIVLASDVI-DNDSWRMWPDGDG---------RIMKDKKVYFDLD 234 (373)
T ss_pred hhhhhhhhccc-chhheEEcccCCc---------ceeeeeeEEeccc
Confidence 7999999 999 9999999987654 3677888777643
No 17
>COG0152 PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism]
Probab=64.30 E-value=12 Score=36.86 Aligned_cols=113 Identities=19% Similarity=0.139 Sum_probs=61.2
Q ss_pred cccccCCCCcccCCCCCCceEeeccCCC--CCCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH------HHHCC
Q 017032 221 YCGNALPDGLVKNQKLPANILTPTTKAE--DHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRV------ASEHG 292 (378)
Q Consensus 221 ~~g~~lp~Gl~eg~~L~~PivE~ttK~d--~~Dp~Is~e~i~~lglvt~ee~~~i~~~al~I~~iL~~~------~~~~G 292 (378)
.||.+|++++.++++|+.|+|+ ++ ..+...+++++..+.=++-.-.+.++..+.+..=+|.++ ..+..
T Consensus 112 ~~~~~l~e~~~k~d~l~dPiv~----d~~i~~~~~~~~ee~~~i~~~alkin~~l~~~~~~~GiilvD~KlEFG~d~~g~ 187 (247)
T COG0152 112 VLGIPLVEFLYKNDELPDPIVT----DEHISALGIATPEEIEEIKELALKINEVLKDLFAKRGIILVDFKLEFGLDEDGE 187 (247)
T ss_pred ECCCCCccccccchhcCCCccc----hhhcchhccCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeeEEeeEcCCCC
Confidence 6789999999999999999997 22 134556677766532122222233333333332222222 12244
Q ss_pred CeEEeeeeEeeecCCCcEEEEeeccCCCCCcccccccchhhhhcCCC-CCCCcHHHHHH
Q 017032 293 LILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLE-PENVDKEFLRL 350 (378)
Q Consensus 293 l~LVD~KlEFG~d~~GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~-~~~~DKq~~R~ 350 (378)
|+|+| |++-|. -.+.=+++. +. | -..++||++++ +..+-.+++++
T Consensus 188 iiLaD---EisPDs-~R~Wd~~t~---~~---~---~DKd~~R~~~g~~~~~y~ev~~r 233 (247)
T COG0152 188 IVLAD---EISPDS-CRLWDAETY---EK---S---LDKDFFRRDLGDLPELYEEVLER 233 (247)
T ss_pred EEEEe---eeCCCc-ccccccccc---cc---c---cchHHHhhcCCCccccHHHHHHH
Confidence 88999 999652 234444433 22 1 13366777655 33344444443
No 18
>PF01259 SAICAR_synt: SAICAR synthetase; InterPro: IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase (6.3.2.6 from EC) (SAICAR synthetase) catalyzes the seventh step in the de novo purine biosynthetic pathway; the ATP-dependent conversion of 5'-phosphoribosyl-5-aminoimidazole-4-carboxylic acid and aspartic acid to SAICAR []. In bacteria (purC), fungi (ADE1) and plants (Pur7), SAICAR synthetase is a monofunctional protein; in animals it is the N-terminal domain of a bifunctional enzyme that also catalyse phosphoribosylaminoimidazole carboxylase (AIRC) activity (see IPR000031 from INTERPRO).; GO: 0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity, 0006164 purine nucleotide biosynthetic process; PDB: 2GQS_A 2GQR_B 3KRE_A 3R9R_A 2H31_A 1A48_A 1OBD_A 2CNV_A 1OBG_A 2CNU_A ....
Probab=63.17 E-value=0.21 Score=48.61 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=28.3
Q ss_pred ccCCCCcccCCCCCCceEeeccCCCCCCCCCCHHHH
Q 017032 224 NALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEI 259 (378)
Q Consensus 224 ~~lp~Gl~eg~~L~~PivE~ttK~d~~Dp~Is~e~i 259 (378)
..||+++.+++.++.|+++|++|.++||.+++.+..
T Consensus 108 ~~l~~p~~e~~~k~d~l~dP~~k~e~~~~~l~~~~~ 143 (248)
T PF01259_consen 108 IKLPPPLVEFFYKDDPLFDPLTKEEEHDEALGIASA 143 (248)
T ss_dssp EEEEEEEEEEEEEEGGGTS-EE-HHSHHHHTTSSHH
T ss_pred cccCCchhhhcccCCCCCCCcccchhhhhhcchhhh
Confidence 357889999999999999999998878888766443
No 19
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=53.04 E-value=68 Score=32.08 Aligned_cols=80 Identities=24% Similarity=0.263 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHCCCeEEeeeeEeeec-CCCcEEEEeeccCCCCCcccccccchhhhhcCCCCCCCcHHHHHHHHHhcCC
Q 017032 279 RLFEYGQRVASEHGLILVDTKYEFGKS-SDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCN 357 (378)
Q Consensus 279 ~I~~iL~~~~~~~Gl~LVD~KlEFG~d-~~GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~~~~~DKq~~R~w~~~~~~ 357 (378)
.+-+-+..++...||.+-|.. ||-.. .+|+.++|| |...... ..+..++|+|.-.++-..
T Consensus 174 ~~v~~~~~l~~~a~LVHgDLS-EyNiL~~~~~p~iID----------~~QaV~~--------~hp~a~e~L~RDv~Ni~~ 234 (268)
T COG1718 174 DVVEYMRRLYKEAGLVHGDLS-EYNILVHDGEPYIID----------VSQAVTI--------DHPNAFEFLERDVRNIAR 234 (268)
T ss_pred HHHHHHHHHHHhcCcccccch-hhheEEECCeEEEEE----------Ccccccc--------CCCchHHHHHHHHHHHHH
Confidence 344556677778999999986 88754 368999999 3222211 146677888876665321
Q ss_pred CCCCCCCCCCcHHHHHHHhc
Q 017032 358 PYEDEVLPDAPEELICELAW 377 (378)
Q Consensus 358 ~~~~~~~P~lP~e~v~~~~~ 377 (378)
.+.---+-.-++++++++.+
T Consensus 235 fF~r~gv~~d~e~~l~~i~~ 254 (268)
T COG1718 235 FFRRKGVEADPEELLEEIKG 254 (268)
T ss_pred HHHHcCCCCCHHHHHHHHhh
Confidence 11111122245666666543
No 20
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=43.89 E-value=62 Score=34.57 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEeeeeEeeec-CCCcEEEEeec
Q 017032 275 RKALRLFEYGQRVASEHGLILVDTKYEFGKS-SDDSILLIDEV 316 (378)
Q Consensus 275 ~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d-~~GeIvLaDEI 316 (378)
++=+.+-.++..++..++|.+.|+- ||-.. -+|.+++||.=
T Consensus 268 ~~Y~~~v~~MR~lY~~c~LVHADLS-EfN~LyhdG~lyiIDVS 309 (520)
T KOG2270|consen 268 ELYQQCVRIMRRLYQKCRLVHADLS-EFNLLYHDGKLYIIDVS 309 (520)
T ss_pred HHHHHHHHHHHHHHHHhceeccchh-hhhheEECCEEEEEEcc
Confidence 3344555667777889999999986 88754 58999999953
No 21
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=42.03 E-value=47 Score=31.53 Aligned_cols=36 Identities=19% Similarity=0.066 Sum_probs=30.2
Q ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHCCCeEEeeeeE
Q 017032 266 TEAEF-DEASRKALRLFEYGQRVASEHGLILVDTKYE 301 (378)
Q Consensus 266 t~ee~-~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlE 301 (378)
+-.++ ..+.+++..+.+.|...|.+.||.|+|+.+|
T Consensus 155 ~~~~i~a~~~eis~~~~~~l~~~~~~~Gi~l~~f~I~ 191 (211)
T PF13421_consen 155 SILDIPAHLDEISEALKEKLNPEFERYGIELVDFGIE 191 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEEEE
Confidence 33444 4677889999999999999999999999886
No 22
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=37.96 E-value=1.9e+02 Score=28.04 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCCcc
Q 017032 268 AEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRY 324 (378)
Q Consensus 268 ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~Rl 324 (378)
...++|.+.|+.|...+++.+... +.++=+-+|.|.+|+|.|+..=.-|.-.-|
T Consensus 185 ~~~~~l~~~a~~ia~~le~~~~~~---~gElGiDl~iD~~g~iWliEvN~kP~~~~~ 238 (262)
T PF14398_consen 185 KIREELEDLALEIAQALEKHFGGH---LGELGIDLGIDKNGKIWLIEVNSKPGKFDF 238 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc---eeEEEEEEEEcCCCCEEEEEEeCCCCcchh
Confidence 455778888888888888776542 555566678889999999987655554333
No 23
>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C). Proteins in this uncharacterised family are described as transmembrane proteins.
Probab=36.89 E-value=64 Score=29.72 Aligned_cols=46 Identities=26% Similarity=0.481 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HCCCeEEeeeeE-eeecCCCcEEEEe
Q 017032 268 AEFDEASRKALRLFEYGQRVAS---EHGLILVDTKYE-FGKSSDDSILLID 314 (378)
Q Consensus 268 ee~~~i~~~al~I~~iL~~~~~---~~Gl~LVD~KlE-FG~d~~GeIvLaD 314 (378)
..+..-.++|+.+.+++..+.. .. +.+.|++.+ ||.+.+|++.++|
T Consensus 56 ~~w~~R~~iA~~lL~~l~~l~~~~~~~-~~lcDv~~~nfgv~~~~~lk~iD 105 (188)
T PF12260_consen 56 SPWEQRAKIALQLLELLEELDHGPLGF-FYLCDVSPDNFGVNDDGRLKLID 105 (188)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCCCCc-EEEeecchHHeEEeCCCcEEEEe
Confidence 3456666789999999998877 44 999999995 9999889988887
No 24
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=27.56 E-value=1.2e+02 Score=28.37 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeec
Q 017032 265 MTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEV 316 (378)
Q Consensus 265 vt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI 316 (378)
++++..++|+++|+++|..|. -+|.--|||.+ +.+|++.+.+-=
T Consensus 129 l~~~~~~~i~~~a~~a~~~lg----~~~~~RiD~rv----~~~g~~~~lEiN 172 (203)
T PF07478_consen 129 LSEELQEKIKEIAKKAFKALG----CRGYARIDFRV----DEDGKPYFLEIN 172 (203)
T ss_dssp S-HHHHHHHHHHHHHHHHHTT----TCSEEEEEEEE----ETTTEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHc----CCCceeEEEEe----ccCCceEEEecc
Confidence 566777889999999997654 78999999987 558888887743
No 25
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=27.10 E-value=81 Score=28.32 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEee
Q 017032 271 DEASRKALRLFEYGQRVASEHGLILVDTKYEFG 303 (378)
Q Consensus 271 ~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG 303 (378)
+.+++.+.+|++++.+++......=-+.-.|||
T Consensus 4 ~~v~~~~~~i~~~i~~l~S~~d~~~~~~~~e~G 36 (132)
T PF14468_consen 4 ERVKEYADRINEYISELYSKKDFLNDDYDREFG 36 (132)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhcccchhhcC
Confidence 356788999999999999987766556666777
No 26
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=26.34 E-value=82 Score=32.02 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEeeeeEeee--cCCCcEEEEe
Q 017032 274 SRKALRLFEYGQRVASEHGLILVDTKYEFGK--SSDDSILLID 314 (378)
Q Consensus 274 ~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~--d~~GeIvLaD 314 (378)
.++...|.+.+..++ +.|+++-|+- ||-. ++||.+++||
T Consensus 205 ~~il~~il~~~~~~~-~~GiVHGDlS-efNIlV~~dg~~~vID 245 (304)
T COG0478 205 DEILDKILEEVRKAY-RRGIVHGDLS-EFNILVTEDGDIVVID 245 (304)
T ss_pred HHHHHHHHHHHHHHH-HcCccccCCc-hheEEEecCCCEEEEe
Confidence 334566677777777 9999999997 8875 4688999999
No 27
>PF14832 Tautomerase_3: Putative oxalocrotonate tautomerase enzyme; PDB: 3C6V_C 3N4D_I 3N4G_C 3N4H_A 2FLZ_C 3MF8_A 3MF7_A 2FLT_A.
Probab=24.38 E-value=1.3e+02 Score=26.84 Aligned_cols=57 Identities=26% Similarity=0.385 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCCcccccccchhhhhcCCCCCCCcHHHHHHHH
Q 017032 273 ASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWF 352 (378)
Q Consensus 273 i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~~~~~DKq~~R~w~ 352 (378)
-.+...+++++|+.+...+|+.+ | +.+||. ..++|..+ |+.++....+-=+.|+
T Consensus 79 ~~~~~~~i~~~l~p~~~~~g~~~-----e---------~~i~et----p~~lw~~~--------G~~pP~~gse~e~~W~ 132 (136)
T PF14832_consen 79 RRRLLDRIDEVLKPHTADKGYDW-----E---------FHIDET----PRDLWKEN--------GLVPPPPGSEAEKEWV 132 (136)
T ss_dssp HHHHHHHHHHHHHHHHCCGGGEE-----E---------EEEEEE-----GGGEEET--------TEEE-STTTHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCCCceE-----E---------EEEecC----CHHHHHHC--------CcCCCcccChHHHHHH
Confidence 56667899999999998887766 3 567788 66677533 6677778788778999
Q ss_pred Hhc
Q 017032 353 KDH 355 (378)
Q Consensus 353 ~~~ 355 (378)
++|
T Consensus 133 ~eN 135 (136)
T PF14832_consen 133 KEN 135 (136)
T ss_dssp HHT
T ss_pred Hhc
Confidence 875
No 28
>PRK14645 hypothetical protein; Provisional
Probab=23.59 E-value=2e+02 Score=26.25 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHCCCeEEeeeeEeeecCCCcE--EEEe
Q 017032 279 RLFEYGQRVASEHGLILVDTKYEFGKSSDDSI--LLID 314 (378)
Q Consensus 279 ~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeI--vLaD 314 (378)
+|.++++..+.+.|+.|||.+ |-....+.+ |.+|
T Consensus 10 ~i~~li~~~~~~~G~elvdve--~~~~~~~~ilrV~ID 45 (154)
T PRK14645 10 DLQQLAEGALEPLGYEVLEVQ--VQRSGGKRIVLVRID 45 (154)
T ss_pred HHHHHHHHHHHHcCCEEEEEE--EEeCCCCeEEEEEEE
Confidence 578889999999999999975 443223344 6667
No 29
>PRK14640 hypothetical protein; Provisional
Probab=22.61 E-value=1.6e+02 Score=26.52 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHCCCeEEeeee
Q 017032 276 KALRLFEYGQRVASEHGLILVDTKY 300 (378)
Q Consensus 276 ~al~I~~iL~~~~~~~Gl~LVD~Kl 300 (378)
+..+|.++++..+++.|+.|||.++
T Consensus 4 ~~~~i~~li~p~~~~~G~el~dve~ 28 (152)
T PRK14640 4 LEQRLTDLLEAPVVALGFELWGIEF 28 (152)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 3457888999999999999999754
No 30
>PRK14631 hypothetical protein; Provisional
Probab=22.29 E-value=1.2e+02 Score=28.33 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEeeee
Q 017032 274 SRKALRLFEYGQRVASEHGLILVDTKY 300 (378)
Q Consensus 274 ~~~al~I~~iL~~~~~~~Gl~LVD~Kl 300 (378)
..+..+|.++++..++..|+.|||..+
T Consensus 4 ~~~~~~i~~li~p~~~~~G~eLvdve~ 30 (174)
T PRK14631 4 SNKSQALTDIIAPAVAACGVDLWGIEF 30 (174)
T ss_pred chHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 345668999999999999999999754
No 31
>PRK14643 hypothetical protein; Provisional
Probab=21.34 E-value=1.9e+02 Score=26.66 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEeeeeEeeec
Q 017032 274 SRKALRLFEYGQRVASEHGLILVDTKYEFGKS 305 (378)
Q Consensus 274 ~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d 305 (378)
..+..+|.++++..+++.|+.|||. ||-..
T Consensus 5 ~~~~~~l~~l~~p~~~~~G~eL~di--e~~~~ 34 (164)
T PRK14643 5 ESIKFQINELVNKELEVLNLKVYEI--NNLKE 34 (164)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEE--EEEec
Confidence 3445588999999999999999996 66543
No 32
>PRK14646 hypothetical protein; Provisional
Probab=20.93 E-value=2.2e+02 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHCCCeEEeeee
Q 017032 277 ALRLFEYGQRVASEHGLILVDTKY 300 (378)
Q Consensus 277 al~I~~iL~~~~~~~Gl~LVD~Kl 300 (378)
..+|.++++..+++.|+.|||..+
T Consensus 6 ~~~i~~li~p~~~~~G~eLvdve~ 29 (155)
T PRK14646 6 KSKLEILLEKVANEFDLKICSLNI 29 (155)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEE
Confidence 447888999999999999999643
No 33
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=20.69 E-value=1.6e+02 Score=19.75 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=16.6
Q ss_pred HHHHHcCCCCHHHHHHHHHHH
Q 017032 257 DEIVKLGLMTEAEFDEASRKA 277 (378)
Q Consensus 257 e~i~~lglvt~ee~~~i~~~a 277 (378)
.++.+.|++|++|++..++.-
T Consensus 9 ~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 9 KELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHcCCCCHHHHHHHHHHH
Confidence 456677999999999888653
No 34
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=20.50 E-value=2.4e+02 Score=22.76 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=26.7
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017032 256 PDEIVKLGLMTEAEFDEASRKALRLFEYGQRVA 288 (378)
Q Consensus 256 ~e~i~~lglvt~ee~~~i~~~al~I~~iL~~~~ 288 (378)
...+..+++||.+|++...++..+.-+.+..+=
T Consensus 38 ~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LE 70 (79)
T PF04380_consen 38 QSALSKLDLVTREEFDAQKAVLARTREKLEALE 70 (79)
T ss_pred HHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999888888777653
No 35
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=20.35 E-value=1.1e+02 Score=23.44 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=25.5
Q ss_pred CHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q 017032 255 TPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHG 292 (378)
Q Consensus 255 s~e~i~~lglvt~ee~~~i~~~al~I~~iL~~~~~~~G 292 (378)
..++...+.-++++++.++...+.++...+.+.+...|
T Consensus 25 pk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 62 (86)
T cd00468 25 PKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPS 62 (86)
T ss_pred CchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33444444447888888898888888888876554333
No 36
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=20.27 E-value=2.1e+02 Score=27.60 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeec
Q 017032 265 MTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEV 316 (378)
Q Consensus 265 vt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI 316 (378)
++++..++|++.+.++++.|. -.|+.-||+++ +.+|++++++ |
T Consensus 239 l~~~~~~~i~~~a~~~~~~lg----~~G~~~vD~~~----~~~g~~~viE-v 281 (315)
T TIGR01205 239 LDEELEEKIKELALKAYKALG----CRGLARVDFFL----DEEGEIYLNE-I 281 (315)
T ss_pred CCHHHHHHHHHHHHHHHHHhC----CCceEEEEEEE----eCCCCEEEEE-e
Confidence 567778889999999988874 25888888876 4578888887 5
No 37
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=20.08 E-value=1.8e+02 Score=21.27 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCC
Q 017032 273 ASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSS 322 (378)
Q Consensus 273 i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~ 322 (378)
.++++.+|-+.+.+.+ |...+.--|+++|+ .||+|
T Consensus 16 K~~l~~~it~~~~~~l--------------g~~~~~i~V~i~E~-~~~~w 50 (60)
T PF01361_consen 16 KRELAEAITDAVVEVL--------------GIPPERISVVIEEV-PPENW 50 (60)
T ss_dssp HHHHHHHHHHHHHHHH--------------TS-GGGEEEEEEEE--CCCE
T ss_pred HHHHHHHHHHHHHHHh--------------CcCCCeEEEEEEEE-Chhhe
Confidence 4555677777777655 54455667999999 89884
Done!