RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017032
(378 letters)
>gnl|CDD|178159 PLN02544, PLN02544, phosphoribosylaminoimidazole-succinocarboxamide
synthase.
Length = 370
Score = 607 bits (1566), Expect = 0.0
Identities = 237/307 (77%), Positives = 273/307 (88%)
Query: 72 QQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYL 131
LSLD + SS R+ E+LG IK +LSN L+ETNL LTVPGL S+ RGKVRDIYD GDYL
Sbjct: 34 SPALSLDDLSSSGRRPEVLGAIKEALSNCLTETNLDLTVPGLGSRRRGKVRDIYDLGDYL 93
Query: 132 VLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSV 191
VLVTTDRQSAFDR+LASIPFKGQVLN+TS WWF+ T+HITPNA++SSPD NVTIAKKCSV
Sbjct: 94 VLVTTDRQSAFDRVLASIPFKGQVLNQTSAWWFNNTKHITPNALVSSPDPNVTIAKKCSV 153
Query: 192 IPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHD 251
PVEFVVRG++TGST TSLWTVYNKG+RNYCGN LPDG+VKNQKLPANILTPTTKA DHD
Sbjct: 154 FPVEFVVRGYMTGSTSTSLWTVYNKGVRNYCGNDLPDGMVKNQKLPANILTPTTKAADHD 213
Query: 252 VPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSIL 311
VP++P+EIV+ GLMT+ +FDE S KAL LF +GQ VA+EHGLILVDTKYEFGK +D +IL
Sbjct: 214 VPISPEEIVEEGLMTQEDFDEVSSKALALFAFGQEVAAEHGLILVDTKYEFGKDADGTIL 273
Query: 312 LIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEEL 371
LIDEVHTPDSSRYW+A SYEER +GLEPEN+DKEFLRLWFK++C+PY+DEVLP+AP EL
Sbjct: 274 LIDEVHTPDSSRYWLADSYEERHAAGLEPENIDKEFLRLWFKENCDPYKDEVLPEAPAEL 333
Query: 372 ICELAWR 378
+CEL+WR
Sbjct: 334 VCELSWR 340
>gnl|CDD|183621 PRK12607, PRK12607, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 313
Score = 423 bits (1090), Expect = e-149
Identities = 149/284 (52%), Positives = 194/284 (68%), Gaps = 10/284 (3%)
Query: 98 SNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDY-LVLVTTDRQSAFDRILASIPFKGQVL 156
+ T + P L + RGKVRD YD D V+V TDR SAFDR+L +IP+KGQVL
Sbjct: 2 MLPRTLTEFNF--PELPNVYRGKVRDNYDLPDGRRVMVATDRISAFDRVLPAIPYKGQVL 59
Query: 157 NETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNK 216
N+T+ +WF+ T+ I PN V++ PD NV + K+C PVE VVRG++ GST W +Y
Sbjct: 60 NQTAAFWFEATKDICPNHVLAVPDPNVVVGKRCEPFPVEMVVRGYLAGST----WRLYKA 115
Query: 217 GIRNYCGNALPDGLVKNQKLPANILTPTTKAED--HDVPVTPDEIVKLGLMTEAEFDEAS 274
G R G LPDGL +NQKLP I+TPTTKAE+ HD P++P+EI+ GL+T ++DE S
Sbjct: 116 GKREMYGVTLPDGLRENQKLPEPIITPTTKAEEGGHDEPISPEEILAQGLLTPEDWDELS 175
Query: 275 RKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERF 334
+ AL LF GQ +A+E GLILVDTKYEFGK +D I+LIDE+HTPDSSRYW A YEERF
Sbjct: 176 KYALALFARGQEMAAERGLILVDTKYEFGKDADGRIVLIDEIHTPDSSRYWYADGYEERF 235
Query: 335 QSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWR 378
+G E +DKEF+R W + C PY E+ P+ P+E+I ++ R
Sbjct: 236 AAGEPQEQLDKEFVRQWLIERCGPYGQEI-PEIPDEVIVSVSER 278
>gnl|CDD|133469 cd01414, SAICAR_synt_Sc, non-metazoan
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. Eukaryotic,
bacterial, and archaeal group of SAICAR synthetases
represented by the Saccharomyces cerevisiae (Sc) enzyme,
mostly absent in metazoans. SAICAR synthetase catalyzes
the seventh step of the de novo biosynthesis of purine
nucleotides (also reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 279
Score = 352 bits (905), Expect = e-121
Identities = 119/277 (42%), Positives = 156/277 (56%), Gaps = 27/277 (9%)
Query: 118 RGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHITPNAV 175
GKVRD+YD G L+ V TDR SAFD IL IP KG+VL + S +WF+ T I PN +
Sbjct: 4 SGKVRDVYDLGDGRLLFVATDRISAFDVILPPDIPGKGEVLTQISAFWFELTEDIIPNHL 63
Query: 176 ISS-------------PDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYC 222
IS+ PD + KK IP+E +VRG++TGS W Y KG C
Sbjct: 64 ISTDVEDLPEIKEPEDPDGRSMVVKKAKPIPIECIVRGYLTGSG----WKEYQKGGTV-C 118
Query: 223 GNALPDGLVKNQKLPANILTPTTKAE-DHDVPVTPDEIVKLGLMTEAEFDEASRKALRLF 281
G LP+GL + QKLP I TP+TKAE HD ++ +E V++ + DE AL L+
Sbjct: 119 GIKLPEGLREAQKLPEPIFTPSTKAEEGHDENISFEEAVEI--IGAELADELRELALALY 176
Query: 282 EYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPE 341
E A++ GLIL DTK+EFG + I+LIDEV TPDSSR+W A SYE G E
Sbjct: 177 ERAAEYAAKRGLILADTKFEFGLDENGEIILIDEVLTPDSSRFWPADSYEP----GKEQP 232
Query: 342 NVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWR 378
+ DK+F+R W + +D P P E+I + + R
Sbjct: 233 SFDKQFVRDWLEASGWDKQDPPPPPLPAEVIEKTSAR 269
>gnl|CDD|216394 pfam01259, SAICAR_synt, SAICAR synthetase. Also known as
Phosphoribosylaminoimidazole-succinocarboxamide
synthase.
Length = 243
Score = 250 bits (641), Expect = 3e-82
Identities = 107/267 (40%), Positives = 149/267 (55%), Gaps = 28/267 (10%)
Query: 109 TVPGLKSKTRGKVRDIY--DGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFD 165
+P L RGKV+DIY D + L++V DR SAFD I + IP KG++LN+TS +WF+
Sbjct: 1 KLPLLA---RGKVKDIYETDDENTLLMVAKDRISAFDGIRKNQIPGKGRILNKTSSFWFE 57
Query: 166 QTRHI-TPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGN 224
+ PN + S + KK +IP+E VVRG+ TGS Y G+ G
Sbjct: 58 FLQEAGIPNHFVESLSDTELLVKKLKMIPIEVVVRGYATGS----FLKRY-TGVV--EGI 110
Query: 225 ALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYG 284
LP GLV++ P I P+TKAE HD ++ + L+ + E D K L L+E
Sbjct: 111 KLPPGLVESFYKPDAIFDPSTKAE-HDENISFAQ--AELLVGKEEADRMKEKTLALYEKL 167
Query: 285 QRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVD 344
++ A++ G+ILVDTK+EFG D ILL DE+ PDSSR W A +YE+++ D
Sbjct: 168 KKYAADKGIILVDTKFEFGLDKDGEILLADEIS-PDSSRLWDADTYEKQY---------D 217
Query: 345 KEFLRLWFKDHCNPYEDEVLPDAPEEL 371
K+FLR W + YE EV P PE++
Sbjct: 218 KQFLRDWLGSNGEAYE-EVGPKLPEDI 243
>gnl|CDD|237571 PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 296
Score = 244 bits (626), Expect = 4e-79
Identities = 106/267 (39%), Positives = 143/267 (53%), Gaps = 28/267 (10%)
Query: 102 SETNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNET 159
T + +P L RGKVRDIY D L++V TDR SAFD IL IP KG+VL +
Sbjct: 1 MSTLMESDLPSLPLLGRGKVRDIYAVDDDRLLMVATDRISAFDVILPEPIPDKGRVLTQM 60
Query: 160 SLWWFDQTRHITPNAVISSPDKNV-------------TIAKKCSVIPVEFVVRGFVTGST 206
S +WFD+ HI PN + +V + KK +PVE VVRG++TGS
Sbjct: 61 SNFWFDKLAHIVPNHLTGIDVDDVVPADEADQVLGRAVVVKKLKPLPVECVVRGYLTGSG 120
Query: 207 DTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAE--DHDVPVTPDEIVKLGL 264
W Y CG LP GLV+ KLP I TP TKAE DHD ++ +E+V+L
Sbjct: 121 ----WKDYQAT-GTVCGIKLPAGLVEASKLPEPIFTPATKAELGDHDENISFEEVVEL-- 173
Query: 265 MTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRY 324
+ + L +++ A+ G+I+ DTK+EFG D ++ L+DEV TPDSSR+
Sbjct: 174 VGAELAAQLRDATLAIYKEAADYAATRGIIIADTKFEFGLDEDGTLTLMDEVLTPDSSRF 233
Query: 325 WIAHSYEERFQSGLEPENVDKEFLRLW 351
W A SY+ G + DK+F+R W
Sbjct: 234 WPADSYQP----GTSQPSFDKQFVRDW 256
>gnl|CDD|223230 COG0152, PurC, Phosphoribosylaminoimidazolesuccinocarboxamide
(SAICAR) synthase [Nucleotide transport and metabolism].
Length = 247
Score = 198 bits (506), Expect = 6e-62
Identities = 82/259 (31%), Positives = 119/259 (45%), Gaps = 40/259 (15%)
Query: 118 RGKVRDIYDGGD--YLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQT-RHITPN 173
GK +D+Y+ D L++ +DR SAFD IP KG + N+ S + F++ P
Sbjct: 9 EGKAKDLYETDDPDLLIMEFSDRASAFDGEKKDQIPGKGALNNQISAFIFEKLEEAGIPT 68
Query: 174 AVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKN 233
I + KK +IP+E VVR + GS L Y G L + L KN
Sbjct: 69 HFIELLSDREQLVKKLEIIPLEVVVRNYAAGS----LLKRYGIEEGTVLGIPLVEFLYKN 124
Query: 234 QKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGL 293
+LP I VT + I LG+ T E +E AL++ E + + ++ G+
Sbjct: 125 DELPDPI-------------VTDEHISALGIATPEEIEEIKELALKINEVLKDLFAKRGI 171
Query: 294 ILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFK 353
ILVD K EFG D I+L DE+ PDS R W A +YE+ DK+F R +
Sbjct: 172 ILVDFKLEFGLDEDGEIVLADEIS-PDSCRLWDAETYEKSL---------DKDFFR---R 218
Query: 354 DHCNPYEDEVLPDAPEELI 372
D + P+ EE++
Sbjct: 219 DLGDL------PELYEEVL 231
>gnl|CDD|232817 TIGR00081, purC, phosphoribosylaminoimidazole-succinocarboxamide
synthase. Alternate name: SAICAR synthetase purine de
novo biosynthesis. E.coli example noted as homotrimer.
Check length. Longer versions may be multifunctional
enzymes [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 237
Score = 134 bits (340), Expect = 2e-37
Identities = 69/218 (31%), Positives = 99/218 (45%), Gaps = 22/218 (10%)
Query: 118 RGKVRDIY--DGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHI-TPN 173
GK +DIY D D L V D SAFD IP KG++ + S + F++ P
Sbjct: 11 SGKAKDIYETDDPDLLRFVFRDDISAFDGEKKDQIPGKGRLNTKISAFIFEKLEEAGIPT 70
Query: 174 AVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKN 233
I + + KK +IP+E +VR GS ++ +P+GL
Sbjct: 71 HYIDLIEDREMLVKKLDIIPLEVIVRNIAAGS-----------LLKRL---GIPEGLELE 116
Query: 234 QKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGL 293
Q L I P E D + LGL TE E + AL++ E ++ E G+
Sbjct: 117 QPLVEFIFKP---DEVGDPMLNESYAEALGLATEEELERIKELALKVNEVLKKYFDEKGI 173
Query: 294 ILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYE 331
ILVD K EFG + +++L DEV +PD+ R W +YE
Sbjct: 174 ILVDFKLEFGLDEEGNLILADEV-SPDTCRLWDKETYE 210
>gnl|CDD|131782 TIGR02735, purC_vibrio,
phosphoribosylaminoimidazole-succinocarboxamide
synthase, Vibrio type. Members of this protein family
appear to represent a novel form of
phosphoribosylaminoimidazole-succinocarboxamide synthase
(SAICAR synthetase), significantly different in sequence
and gap pattern from a form (see TIGR00081) shared by a
broad range of bacteria and eukaryotes. Members of this
family are found within the gammaproteobacteria in the
genera Vibrio, Shewanella, and Colwellia, and also
(reported as a fragment) in the primitive eukarote
Guillardia theta [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 365
Score = 126 bits (319), Expect = 2e-33
Identities = 92/310 (29%), Positives = 134/310 (43%), Gaps = 63/310 (20%)
Query: 96 SLSNRLSETNLHLTVPGLKSKTRGKVRDIY-------------------DGGDYLVLVTT 136
SL++++ N L + + GKVR +Y ++V +
Sbjct: 1 SLADQVLAVNDDLPIRTDEPVHSGKVRSVYWLTEEDSRRLIEEKGYPVAHDAPLAIMVIS 60
Query: 137 DRQSAFDRI------LASIPFKGQVLNETSLWWFDQTRH--ITPNAVISSPDKNVTIAKK 188
DR SAFD I L +P KG LN S WF + + ++ P V I +K
Sbjct: 61 DRISAFDCIWHAEGGLNGVPGKGAALNAISNHWFKLFAEAGLAESHILDIPHPFVWIVQK 120
Query: 189 CSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTK-- 246
+ +E + R ++TGS +W Y KG R +CG LP+GL K+Q+LP ++TP+TK
Sbjct: 121 AKPVKIEAICRQYITGS----MWRAYAKGERVFCGIDLPEGLAKDQRLPELLITPSTKGI 176
Query: 247 -------AEDHDVPVTPDEI----VKLGLMTEAEFDEASRKALRLFEYGQRVASEH---- 291
DV +T +I + D RL G V S+
Sbjct: 177 LEGIPGVPAIDDVNITRADIERNWSAFNFEQPEDIDHYE----RLLREGFAVISDRLSKL 232
Query: 292 GLILVDTKYEFGKSSDDS----ILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEF 347
G + VDTK+EFG +D ++ +DEV TPDSSR W A +Y G EN + F
Sbjct: 233 GQLFVDTKFEFGYVTDVEGTRKLIYMDEVGTPDSSRIWDAGAY----AQGKIVENSKEGF 288
Query: 348 LRL---WFKD 354
+ WF D
Sbjct: 289 RQALLNWFPD 298
>gnl|CDD|184420 PRK13960, PRK13960, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 367
Score = 121 bits (306), Expect = 3e-31
Identities = 84/252 (33%), Positives = 126/252 (50%), Gaps = 40/252 (15%)
Query: 132 VLVTTDRQSAFDRI------LASIPFKGQVLNETSLWWFDQTRH--ITPNAVISSPDKNV 183
++V +DR SAFD I L +P KG LN S WF + + + ++ P V
Sbjct: 57 IMVISDRISAFDCIWHGEGGLNGVPGKGAALNAISNHWFKLFKENGLADSHILDIPHPFV 116
Query: 184 TIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTP 243
I +K + +E + R ++TGS +W Y+KG R +CG LP+GL K+QKLP ++TP
Sbjct: 117 WIVQKARPVMIEAICRQYITGS----MWRAYSKGEREFCGITLPEGLEKDQKLPELLITP 172
Query: 244 TTK---------AEDHDVPVTPDEIVKLGLMTEA-EFDEASRKAL--RLFEYGQRVAS-- 289
+TK E DV ++ +I +A F A L +L + G +V S
Sbjct: 173 STKGILTGIPGVPEADDVNISRSDIEA---NYQAFNFSSADDIDLYEKLLKEGFKVISDA 229
Query: 290 --EHGLILVDTKYEFG----KSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENV 343
+ I VDTK+EFG + ++ ++ +DEV TPDSSR W +Y + G EN
Sbjct: 230 LAKLDQIFVDTKFEFGYVTDAAGNEKLIYMDEVGTPDSSRIWDGAAY----RDGKIVEN- 284
Query: 344 DKEFLRLWFKDH 355
KE R + +H
Sbjct: 285 SKEGFRQFLLNH 296
>gnl|CDD|133468 cd00476, SAICAR_synt, 5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. SAICAR synthetase
(the PurC gene product) catalyzes the seventh step of
the de novo biosynthesis of purine nucleotides (also
reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 230
Score = 114 bits (287), Expect = 8e-30
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 27/231 (11%)
Query: 118 RGKVRDIYDGGD-YLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHI-TPNA 174
RGK + +Y+ D L+L D SA D + KG + + +L+ F P
Sbjct: 4 RGKTKIVYETKDGVLLLEFKDDISAGDGARRNFLDEKGDITAKLTLFIFKYLSEAGIPTH 63
Query: 175 VISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQ 234
+ + K IP+E VVR TGS ++ Y G + +
Sbjct: 64 FVERLGPRTLLVDKLKXIPLEVVVRNRATGSF-----------VKRY------GGFKEGR 106
Query: 235 KLPANILTPTTKAE-DHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGL 293
+ P ++ K + +HD V+ D++ +LG + + + + A+++ +++ S GL
Sbjct: 107 EFPPPLVEFFYKDDAEHDPIVSEDQLERLGFIGKVDVERXKELAVKINTVLKKLFSPAGL 166
Query: 294 ILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYE-----ERFQSGLE 339
L D K EFG + I+L DE+ +PDSSR W R ++ L
Sbjct: 167 ELWDFKLEFGLDEEGEIVLGDEI-SPDSSRLWRKGGEPYDKDLFRRRASLG 216
>gnl|CDD|133470 cd01415, SAICAR_synt_PurC, bacterial and archaeal
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. A subfamily of SAICAR
synthetases represented by the Thermotoga maritima (Tm)
enzyme and E. coli PurC. SAICAR synthetase catalyzes the
seventh step of the de novo biosynthesis of purine
nucleotides (also reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 230
Score = 97.1 bits (243), Expect = 2e-23
Identities = 66/230 (28%), Positives = 100/230 (43%), Gaps = 30/230 (13%)
Query: 119 GKVRDIYDGGD--YLVLVTTDRQSAFD--RILASIPFKGQVLNETSLWWFDQ-TRHITPN 173
GK + +Y D L++ D +AF+ + +I KG + NE S F +
Sbjct: 5 GKAKIVYATDDPDVLIVEFKDDATAFNGKKK-DTIEGKGVLNNEISALIFKYLEENGIKT 63
Query: 174 AVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKN 233
I + KK +IP+E VVR GS ++ G+ +
Sbjct: 64 HFIEKLSDREQLVKKVEIIPLEVVVRNIAAGSL-----------VKRL-------GIEEG 105
Query: 234 QKLPANILTPTTKAEDHDVP-VTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHG 292
L I+ K ++ P + D I+ LGL TE E E AL++ E +E G
Sbjct: 106 TVLDPPIVEFYYKNDELGDPLINEDHILALGLATEEELKEIKELALKINEVLSEFFAEIG 165
Query: 293 LILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYE----ERFQSGL 338
+ILVD K EFG+ D I+L DE+ +PD+ R W + E +RF+ L
Sbjct: 166 IILVDFKLEFGRDKDGEIVLADEI-SPDTCRLWDKETGEKLDKDRFRRDL 214
>gnl|CDD|181800 PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Reviewed.
Length = 238
Score = 88.6 bits (221), Expect = 3e-20
Identities = 68/236 (28%), Positives = 100/236 (42%), Gaps = 40/236 (16%)
Query: 118 RGKVRDIY--DGGDYLVLVTTDRQSAFD--RILASIPFKGQVLNETSLWWFDQ-TRHITP 172
GK + +Y D D L++ D +AF+ + I KG + N+ S + F + P
Sbjct: 9 EGKAKIVYSTDDPDLLIVEFKDDATAFNGEKK-EQIDGKGVLNNQISSFIFKKLEEAGIP 67
Query: 173 NAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNK--GIRNYCGNALPDGL 230
I + KK +IP+E VVR GS K GI G LP +
Sbjct: 68 THFIEKLSDREQLVKKVEIIPLEVVVRNVAAGS--------LVKRLGIEE--GTVLPPPI 117
Query: 231 V----KNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQR 286
V KN L D + D I+ LG T E E AL++ + +
Sbjct: 118 VEFYYKNDAL-------------GDPMINEDHILALGWATPEELAEIKELALKINDVLKG 164
Query: 287 VASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYE----ERFQSGL 338
+ + G+ LVD K EFG+ D I+L DE+ +PD+ R W + E +RF+ L
Sbjct: 165 LFAGAGIRLVDFKLEFGRDKDGEIVLADEI-SPDTCRLWDKETNEKLDKDRFRRDL 219
>gnl|CDD|133471 cd01416, SAICAR_synt_Ade5, Ade5_like
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. Eukaryotic group of
SAICAR synthetases represented by the Drosophila
melanogaster, N-terminal, SAICAR synthetase domain of
bifunctional Ade5. The Ade5 gene product (CAIR-SAICARs)
catalyzes the sixth and seventh steps of the de novo
biosynthesis of purine nucleotides (also reported as
seventh and eighth steps). SAICAR synthetase converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 252
Score = 70.4 bits (173), Expect = 8e-14
Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 31/220 (14%)
Query: 119 GKVRDIY---DGGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWWFDQTRHI-TPN 173
GK + +Y D +++ + DR +A D I K + N+T+ F+ +
Sbjct: 10 GKTKIVYELPDQPGLVLIQSKDRITAGDGARKDEIEGKAAISNKTTSNVFELLQEAGIKT 69
Query: 174 AVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKN 233
+ IA+KC +IP+E+V R TGS + N G++ G ++
Sbjct: 70 HFVKQCSPTAFIARKCEMIPIEWVCRRIATGS-----FLKRNPGVKE--GYRFSPPKLE- 121
Query: 234 QKLPANILTPTTKAED--HDVPVTPDEIVKLGLMTE------AEFDEASRKALRLFEYGQ 285
+D HD + +++++ L E D ++ + +FE +
Sbjct: 122 ----------FFYKDDANHDPQWSEEQLLEAKLNCGGLKIGKKEVDIMTKSTIAIFEILE 171
Query: 286 RVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYW 325
+ + LVD K EFG +L+ +V DS R W
Sbjct: 172 KAWATQDCTLVDMKIEFGVDVTTGEILLADVIDNDSWRLW 211
>gnl|CDD|237570 PRK13959, PRK13959, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 341
Score = 68.6 bits (168), Expect = 7e-13
Identities = 70/288 (24%), Positives = 109/288 (37%), Gaps = 69/288 (23%)
Query: 118 RGKVRDIYDGGDYL-------VLVTTDRQSAFD--RILASIPFKGQVLNETSLWWFDQ-- 166
G V+D Y + V +DR S FD + IP KG L + F+
Sbjct: 1 MGSVKDFYVDEEPTETDLGRGRFVFSDRYSVFDWGIMPDEIPDKGASLCTMGAYNFELLE 60
Query: 167 TRHITPNAVIS--SPDKNVTIAKKCSVIPVEFVVR-------GFVTGSTDTSLWTVYNK- 216
I I + V +A+ S P E V+ F GS D + Y++
Sbjct: 61 EEGI-KTHYIGVVEDGEVVRLAE-ASEPPNEMAVKLTQVPDLPFEGGSYD---YDAYHEA 115
Query: 217 GIRNY-------CGNALPD------------------GLVKN------QKLPANILTPTT 245
NY N +P GL + KLP I+ +T
Sbjct: 116 AGENYLIPLEVIFRNYVPVGSSLRDRIKEGKIKPEDLGLDADEWPEEGVKLPEPIVEFST 175
Query: 246 KAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKS 305
K E+ D ++ E ++ ++ AE +E AL++ E A + GLI D K EF
Sbjct: 176 KYEEQDRYLSRKEADEIAGLSRAEIEELEELALKVDEIITEEAEKRGLIHEDGKIEFALY 235
Query: 306 SDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFK 353
+ I ++D V T D +R+ SYE + + KE +R +++
Sbjct: 236 EEREIRVVDVVGTFDENRF----SYEGQ--------ELSKEVVRQYYR 271
>gnl|CDD|233849 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase. This
enzyme, formally named (1->4)-alpha-D-glucan
1-alpha-D-glucosylmutase, is the TreY enzyme of the
TreYZ pathway of trehalose biosynthesis, an alternative
to the OtsAB pathway. Trehalose may be incorporated into
more complex compounds but is best known as compatible
solute. It is one of the most effective osmoprotectants,
and unlike the various betaines does not require
nitrogen for its synthesis [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 825
Score = 33.5 bits (77), Expect = 0.18
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 18/77 (23%)
Query: 77 LDAVISSNRKAELLGD--------IKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDG- 127
+DAV+ + L D I L N LS+T L LT PG V DIY G
Sbjct: 616 VDAVLDPPAGSLFLTDFVAREKKLIPAGLQNSLSQTLLKLTAPG--------VPDIYQGT 667
Query: 128 -GDYLVLVTTDRQSAFD 143
L LV D + D
Sbjct: 668 EFWDLSLVDPDNRRPVD 684
>gnl|CDD|219471 pfam07574, SMC_Nse1, Nse1 non-SMC component of SMC5-6 complex. S.
cerevisiae Nse1 forms part of a complex with SMC5-SMC6
This non-structural maintenance of chromosomes (SMC)
complex plays an essential role in genomic stability,
being involved in DNA repair and DNA metabolism. It is
conserved in eukaryotes from yeast to human.
Length = 180
Score = 32.0 bits (73), Expect = 0.29
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 70 HHQQHLSLDAVISSNRKAELLGD--IKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDG 127
+ + A I ++ L D + L ++E N L+ G K K KVR DG
Sbjct: 17 SENELDKIFAAICADHGVTLPDDKTWQDKLDEFVAEINKRLSPLGYKIK---KVRYQPDG 73
Query: 128 GDYLVLVTTD 137
Y V V T
Sbjct: 74 ERYYVYVNTV 83
>gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit.
Length = 821
Score = 31.2 bits (71), Expect = 0.97
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 12/39 (30%)
Query: 292 GLILVDTKY------------EFGKSSDDSILLIDEVHT 318
GL+L TKY + + +++ IL+IDEVHT
Sbjct: 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHT 282
>gnl|CDD|218712 pfam05710, Coiled, Coiled coil. This region is found in a group
of Dictyostelium discoideum proteins. It is likely to
form a coiled-coil. Some of the proteins are regulated
by cyclic AMP and are expressed late in development.
Length = 90
Score = 29.0 bits (65), Expect = 1.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 20 KISAPKLSFSSSFSSFGTKPNSSNSN 45
I K S SS SSFG+ S SN
Sbjct: 9 SIGNSKSSSKSSISSFGSSSLSMGSN 34
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 29.6 bits (67), Expect = 3.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 301 EFGKSSDDSILLIDEVHTP 319
+ + S + IL IDE+HT
Sbjct: 256 KEVEKSKNVILFIDEIHTI 274
>gnl|CDD|215536 PLN02991, PLN02991, oxidoreductase.
Length = 543
Score = 29.2 bits (65), Expect = 4.5
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 22/82 (26%)
Query: 123 DIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSL--------------------- 161
D++ G Y VL+T D+ + I+ S F ++L T +
Sbjct: 253 DVHVGQSYSVLITADQPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQL 312
Query: 162 -WWFDQTRHITPNAVISSPDKN 182
W FDQ R I N S P N
Sbjct: 313 SWSFDQARAIKTNLTASGPRPN 334
>gnl|CDD|150363 pfam09675, Chlamy_scaf, Chlamydia-phage Chp2 scaffold
(Chlamy_scaf). Members of this entry are encoded by
genes in chlamydia-phage such as Chp2. These viruses
have around eight genes and obligately infect
intracellular bacterial pathogens of the genus
Chlamydia. This protein is annotated as VP3 or
structural protein (as if a protein of mature viral
particles), however, it is displaced from procapsids as
DNA is packaged, and therefore is more correctly
described as a scaffolding protein.
Length = 107
Score = 27.5 bits (61), Expect = 4.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 253 PVTPDEIVKLGLMTEAEFDEASRKALRL 280
P DE V LGL+ E RK L+L
Sbjct: 72 PENYDEAVSLGLLKTEMRIEVQRKRLKL 99
>gnl|CDD|218779 pfam05853, DUF849, Prokaryotic protein of unknown function
(DUF849). This family consists of several hypothetical
prokaryotic proteins with no known function.
Length = 273
Score = 28.6 bits (65), Expect = 4.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 244 TTKAEDHDVPVTPDEIV 260
T ++ +PVTP+EI
Sbjct: 13 HTPSDSPALPVTPEEIA 29
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 28.8 bits (65), Expect = 5.1
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 116 KTR-GKV-----RDIYDGGDYLVLVTTDRQSAFDRI 145
KTR GK+ R I DG DY T + S D I
Sbjct: 572 KTRSGKILRRTLRKIADGEDYKDPSTIEDPSVLDEI 607
>gnl|CDD|221427 pfam12114, Period_C, Period protein 2/3C-terminal region. This
domain is found in eukaryotes. This domain is typically
between 164 to 200 amino acids in length. This domain
is found associated with pfam08447.
Length = 190
Score = 28.2 bits (63), Expect = 6.1
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 21 ISAPKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKNQNQNQNQNHHHHQQHLS 76
S S S S G+ SSNS+ Y S+ + S + + Q+ H +Q +
Sbjct: 30 GSGSSGSGSLGSGSNGSSSGSSNSSKY-FGSIDMSSENSHKAKKTQDTHEEEQFIK 84
>gnl|CDD|241406 cd13252, PH1_ADAP, ArfGAP with dual PH domains Pleckstrin homology
(PH) domain, repeat 1. ADAP (also called centaurin
alpha) is a phophatidlyinositide binding protein
consisting of an N-terminal ArfGAP domain and two PH
domains. In response to growth factor activation, PI3K
phosphorylates phosphatidylinositol 4,5-bisphosphate to
phosphatidylinositol 3,4,5-trisphosphate. Centaurin
alpha 1 is recruited to the plasma membrane following
growth factor stimulation by specific binding of its PH
domain to phosphatidylinositol 3,4,5-trisphosphate.
Centaurin alpha 2 is constitutively bound to the plasma
membrane since it binds phosphatidylinositol
4,5-bisphosphate and phosphatidylinositol
3,4,5-trisphosphate with equal affinity. This cd
contains the first PH domain repeat. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 125
Score = 27.6 bits (62), Expect = 6.2
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 155 VLN--ETSLWWFDQTRHITPNAVISSPDKNVTIAK 187
VL+ E +L +F + P AVIS + N
Sbjct: 33 VLSEREGTLKYFVKEDAKEPKAVISIKELNAVFQP 67
>gnl|CDD|223474 COG0397, COG0397, Uncharacterized conserved protein [Function
unknown].
Length = 488
Score = 28.4 bits (64), Expect = 6.9
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 13/88 (14%)
Query: 261 KLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFG--KSSDDSILLIDEVHT 318
+LGL + AE D A L R+ +E G+ + L
Sbjct: 340 RLGLKSGAEEDIA------LVNTLLRLLAESGVDYTWFFRFLSWFGGWAAAEELALRFID 393
Query: 319 PDSSRYWIAHSYEERFQSGLEPENVDKE 346
W A Y R L E+ D +
Sbjct: 394 RAGFDAWEAR-YRLR----LALEDFDPD 416
>gnl|CDD|236460 PRK09300, PRK09300, tRNA splicing endonuclease; Reviewed.
Length = 330
Score = 28.4 bits (64), Expect = 7.0
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 13/53 (24%)
Query: 253 PVTPDEIVKLGLMTEAEFDEASR--KALRLFEYGQRVASEHGLILVDTKYEFG 303
+ DE V+ E EFD + LR E G + T ++FG
Sbjct: 219 ILDADEFVERAREVEGEFDRKLAVYRDLR----------ERGFV-PKTGFKFG 260
>gnl|CDD|234863 PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.
Length = 483
Score = 28.2 bits (64), Expect = 7.3
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 236 LPANILTPTT-------KAEDHDVPVT---PDEIVKLG 263
P NILTP A+++ + V E+ KLG
Sbjct: 183 EPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLG 220
>gnl|CDD|184907 PRK14943, PRK14943, DNA polymerase III subunit beta; Provisional.
Length = 374
Score = 28.0 bits (62), Expect = 9.3
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 100 RLSETNLHLTVPG-------LKSKTRGKVRDIYDGGDYLVLVTTDRQSAFD 143
RL+ L P L +KT G++R + D G L + DRQ+AF+
Sbjct: 175 RLALAETELEFPEDQAGDAILPAKTVGELRRLLDKGGKLKIRFNDRQAAFE 225
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.391
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,974,490
Number of extensions: 1790053
Number of successful extensions: 1322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1268
Number of HSP's successfully gapped: 42
Length of query: 378
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 279
Effective length of database: 6,546,556
Effective search space: 1826489124
Effective search space used: 1826489124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.9 bits)