RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017032
(378 letters)
>3r9r_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid; 1.85A
{Mycobacterium abscessus}
Length = 301
Score = 369 bits (950), Expect = e-128
Identities = 89/289 (30%), Positives = 146/289 (50%), Gaps = 29/289 (10%)
Query: 106 LHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWW 163
+ ++ + GKVR++Y ++L+ V TDR SAFD +L + IP KG++L S+++
Sbjct: 5 MRPSLSDYQHVASGKVRELYRVDDEHLLFVATDRISAFDFVLDTPIPDKGRILTAMSVFF 64
Query: 164 FDQTRHITPNAVISSPDK---------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVY 214
F PN + PD + ++ ++PVE V RG++TGS Y
Sbjct: 65 FGLL--TVPNHLAGPPDDPRIPEEVLGRALLVRRLDMLPVECVARGYLTGSG----LLDY 118
Query: 215 NKGIRNYCGNALPDGLVKNQKLPANILTPTTKAE--DHDVPVTPDEIVKLGLMTEAEFDE 272
+ CG+ LP GL + +L + TP TKA+ +HD+ V +V GL+ ++
Sbjct: 119 QRT-GAVCGHVLPQGLGEASRLDPPLFTPATKADIGEHDMNVDFAAVV--GLVGAVRANQ 175
Query: 273 ASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEE 332
+ ++++ A G+IL DTK+EFG + +++L DEV TPDSSRYW A Y+
Sbjct: 176 LRDETIKIYTRAAAHALHKGIILADTKFEFGVDIEGNLVLADEVFTPDSSRYWDAAHYQP 235
Query: 333 RFQSGLEPENVDKEFLRLWF---KDHCNPYEDEVLPDAPEELICELAWR 378
G+ ++ DK+F+R W + + D P P+E+ R
Sbjct: 236 ----GVVQDSFDKQFVRNWLTGPESGWDRASDTPPPPLPDEVAVATRER 280
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase,
phosphoribosylaminoimidazolesuccinocarboxamide (saicar)
SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces
cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A*
2cnv_A* 1obg_A*
Length = 306
Score = 361 bits (928), Expect = e-125
Identities = 94/305 (30%), Positives = 149/305 (48%), Gaps = 43/305 (14%)
Query: 101 LSETNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNE 158
+++T L +P + RGKVRDIY+ L+ V TDR SA+D I+ + IP KG +L +
Sbjct: 3 ITKTELDGILPLVA---RGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTK 59
Query: 159 TSLWWFDQTRHITPNAVISSPDK----------------------NVTIAKKCSVIPVEF 196
S +WF + N ++ + K +IP+E
Sbjct: 60 LSEFWFKFLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEV 119
Query: 197 VVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAE--DHDVPV 254
+VRG++TGS W Y K G P GL ++Q+ P I TP+TKAE +HD +
Sbjct: 120 IVRGYITGSA----WKEYVKT-GTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENI 174
Query: 255 TPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGK-SSDDSILLI 313
+P + +L + E + A++L+ + A E G+I+ DTK+EFG + I+L+
Sbjct: 175 SPAQAAEL--VGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILV 232
Query: 314 DEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELIC 373
DEV TPDSSR+W SY+ G ++ DK+FLR W + + P++++
Sbjct: 233 DEVLTPDSSRFWNGASYKV----GESQDSYDKQFLRDWLTANKLNGVN--GVKMPQDIVD 286
Query: 374 ELAWR 378
+
Sbjct: 287 RTRAK 291
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
structural genomics, saicar synthetase, PSI, protein
structure initiative; 2.20A {Thermotoga maritima} SCOP:
d.143.1.1
Length = 230
Score = 245 bits (627), Expect = 2e-80
Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 34/247 (13%)
Query: 118 RGKVRDIYDGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHIT-PNAV 175
GK + + GDY +L D +A D + + KG + ET+ +
Sbjct: 4 EGKTKIVKVTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEKGIKTHL 63
Query: 176 ISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQK 235
+ + P+E VVR GS Y G + +
Sbjct: 64 VEYIPPRTLKVIPLKMFPLEVVVRLKKAGS----FVRRY--------------GGAEGED 105
Query: 236 LPANILTPTTKAED-HDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLI 294
LP ++ K ++ HD V D + LG+ T+ + ++ A+++ +
Sbjct: 106 LPVPLVEFFIKDDERHDPMVCVDHLEILGIATKKQAEKMKEAAVKITLALKEFFERANFE 165
Query: 295 LVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKD 354
L D KYEFG D +++L DE+ +PD+ R + E DK+ R D
Sbjct: 166 LWDIKYEFGLDKDGNVVLGDEI-SPDTFRLR------------KKGEIFDKDVYRRDLGD 212
Query: 355 HCNPYED 361
Y +
Sbjct: 213 PLKKYRE 219
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide S; ADP complex,
structural genomics, NPPSFA; HET: ADP; 1.75A
{Geobacillus kaustophilus}
Length = 244
Score = 227 bits (580), Expect = 3e-73
Identities = 66/253 (26%), Positives = 102/253 (40%), Gaps = 32/253 (12%)
Query: 113 LKSKTRGKVRDIYDG--GDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRH 169
+ GK + IY D L + D +AF+ A+I KG++ NE S F + R
Sbjct: 7 QQLLYEGKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLKLRE 66
Query: 170 I-TPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPD 228
N I + ++ ++IP+E VVR V GS L L +
Sbjct: 67 AGIANHFIEKLSPTEQLVRRVTIIPLEVVVRNVVAGS----LAKRIGLEEGTPLEAPLVE 122
Query: 229 GLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVA 288
KN L D + D I L L + E + AL + + +
Sbjct: 123 FYYKNDDL-------------GDPLLLEDHIFILKLASREEVAALKQAALAVNDVLRLHF 169
Query: 289 SEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFL 348
+E + L+D K EFG+++D +ILL DE+ +PD+ R W A + E +DK+
Sbjct: 170 AERNVRLIDFKLEFGRTADGAILLADEI-SPDTCRLWDAKTN----------EKLDKDVF 218
Query: 349 RLWFKDHCNPYED 361
R + YE
Sbjct: 219 RRDLGSLTDAYEV 231
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer
sandwich, ligase, purine biosynthesis, structural
genomics; HET: ATP CIT; 2.03A {Methanocaldococcus
jannaschii} PDB: 2yzl_A*
Length = 242
Score = 214 bits (546), Expect = 4e-68
Identities = 63/260 (24%), Positives = 105/260 (40%), Gaps = 34/260 (13%)
Query: 109 TVPGLKSKTRGKVRDIYDGGD-YLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQ 166
+ + GK + IY+ D +++ D +A + KG + S F+
Sbjct: 7 EILKKQPLYSGKAKSIYEIDDDKVLIEFRDDITAGNGAKHDVKQGKGYLNALISSKLFEA 66
Query: 167 -TRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNA 225
+ I + IAKK +IP+E +VR GS L Y
Sbjct: 67 LEENGVKTHYIKYIEPRYMIAKKVEIIPIEVIVRNIAAGS----LCRRY----------- 111
Query: 226 LPDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYG 284
+ ++LP I+ K ++ D + D V LGL T E ++ AL++ E
Sbjct: 112 ---PFEEGKELPFPIVQFDYKNDEYGDPMLNEDIAVALGLATREELNKIKEIALKVNEVL 168
Query: 285 QRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVD 344
+++ E G+ILVD K E GK + ++L+ DE+ +PD+ R W + + +D
Sbjct: 169 KKLFDEKGIILVDFKIEIGKDREGNLLVADEI-SPDTMRLWDKETR----------DVLD 217
Query: 345 KEFLRLWFKDHCNPYEDEVL 364
K+ R D Y V
Sbjct: 218 KDVFRKDLGDVIAKYR-IVA 236
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta
structure, csgid, ligase, center for structural G of
infectious diseases; HET: ADP AMP CIT; 1.40A
{Clostridium perfringens}
Length = 238
Score = 208 bits (532), Expect = 4e-66
Identities = 56/256 (21%), Positives = 101/256 (39%), Gaps = 35/256 (13%)
Query: 111 PGLKSKTRGKVRDIYDG--GDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQ- 166
L+ GK + IY D +++ D +AF+ A I KG + NE + F+
Sbjct: 6 NQLEMLYEGKAKKIYATDKEDMVIVHYKDDATAFNGEKKAQIESKGVLNNEITSLIFEML 65
Query: 167 TRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNAL 226
+ + + + KK ++P+E +VR GS +
Sbjct: 66 NKEGIKTHFVEKLNDRDQLCKKVEIVPLEVIVRNVAAGS-----------MAKRL----- 109
Query: 227 PDGLVKNQKLPANILTPTTKAED-HDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQ 285
GL + +L + + K + D + V +G T E ++ ++ E +
Sbjct: 110 --GLEEGYELKTTVFELSYKDDSLGDPLINDYHAVGIGATTFEELNKIYEITAKVNEILK 167
Query: 286 RVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDK 345
+ + L+D K EFG+ + ILL DE+ +PD+ R+W A + E +DK
Sbjct: 168 EAFKKQNINLIDFKLEFGR-YNGEILLADEI-SPDTCRFWDATTG----------EKMDK 215
Query: 346 EFLRLWFKDHCNPYED 361
+ R + N Y +
Sbjct: 216 DRFRRDMGNVINGYRE 231
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC,
ADE2, ADE1, nucleotide complex, octahedral magnesium
coordination; HET: ADP; 2.00A {Escherichia coli} PDB:
2gqs_A*
Length = 237
Score = 202 bits (515), Expect = 1e-63
Identities = 56/249 (22%), Positives = 90/249 (36%), Gaps = 35/249 (14%)
Query: 118 RGKVRDIYDGGD--YLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHIT-PN 173
RGK + +Y + LVL + SA D KG V N+ + + + P
Sbjct: 9 RGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSKLAEAGIPT 68
Query: 174 AVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKN 233
+ + KK ++PVE VVR GS ++ G+ +
Sbjct: 69 QMERLLSDTECLVKKLDMVPVECVVRNRAAGS-----------LVKRL-------GIEEG 110
Query: 234 QKLPANILTPTTKAED-HDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHG 292
+L + K + HD V G +++ + + +++ + G
Sbjct: 111 IELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKANDVLKKLFDDAG 170
Query: 293 LILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWF 352
LILVD K EFG ++L DE +PD SR W + E +DK+ R
Sbjct: 171 LILVDFKLEFGL-YKGEVVLGDEF-SPDGSRLWDKETL----------EKMDKDRFRQSL 218
Query: 353 KDHCNPYED 361
YE
Sbjct: 219 GGLIEAYEA 227
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.80A {Ehrlichia chaffeensis str}
Length = 263
Score = 201 bits (513), Expect = 5e-63
Identities = 54/281 (19%), Positives = 104/281 (37%), Gaps = 42/281 (14%)
Query: 98 SNRLSETNLHLTVPGLKSKTRGKVRDIYDGGD--YLVLVTTDRQSAFDRIL-ASIPFKGQ 154
++ + + GK + I+ + ++ D +AF+ A I KG
Sbjct: 12 LEAQTQGPGSM--ENKEKIYEGKAKIIFATLNPLEVIQHFKDEITAFNNKKAAIIHEKGI 69
Query: 155 VLNETSLWWFDQ-TRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTV 213
+ N S + + IS ++ + KK ++IP+E V+R G+
Sbjct: 70 LNNYISSFLMKKLIDKGIKTHFISLLNQREQLVKKITIIPIEVVIRNLAAGN----FSKR 125
Query: 214 YNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEA 273
+ + + + KN +L D V+ I+ +T E ++
Sbjct: 126 FQIADGTPFKSPIIEFYYKNDEL-------------SDPMVSEGHILSFQWLTNQELEKI 172
Query: 274 SRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDS---ILLIDEVHTPDSSRYWIAHSY 330
+L++ + G+ LVD K EFGK +D + L DE+ +PD+ R W +
Sbjct: 173 KILSLKINNILSELFFNVGIKLVDFKLEFGKLHNDEQSDLFLADEI-SPDTCRLWDISTN 231
Query: 331 EERFQSGLEPENVDKEFLRLWFKDHCNPYED-----EVLPD 366
+ +DK+ RL + Y + +P+
Sbjct: 232 ----------KRLDKDRYRLNLGNVIEGYREVAHKLNAIPN 262
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
2.80A {Homo sapiens}
Length = 425
Score = 129 bits (326), Expect = 5e-34
Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 31/237 (13%)
Query: 119 GKVRDIY---DGGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNETSLWWFDQTRHIT-PN 173
GK +++Y D ++L + D+ +A + + K + N+ + F +
Sbjct: 16 GKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQLLQEAGIKT 75
Query: 174 AVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKN 233
A + IA +C +IP+E+V R TGS ++ G + +G
Sbjct: 76 AFTRKCGETAFIAPQCEMIPIEWVCRRIATGSF-----------LKRNPG--VKEG---- 118
Query: 234 QKLPANILTPTTKAED-HDVPVTPDEIVKLG------LMTEAEFDEASRKALRLFEYGQR 286
K + K + +D + ++++ L+ + E D S +FE ++
Sbjct: 119 YKFYPPKVELFFKDDANNDPQWSEEQLIAAKFCFAGLLIGQTEVDIMSHATQAIFEILEK 178
Query: 287 VASEHGLILVDTKYEFGKSSDDS-ILLIDEVHTPDSSRYWIAHSYEERFQSGLEPEN 342
LVD K EFG I+L D + DS R W + ++ +
Sbjct: 179 SWLPQNCTLVDMKIEFGVDVTTKEIVLADVI-DNDSWRLWPSGDRSQQKDKQSYRDL 234
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 9e-08
Identities = 55/361 (15%), Positives = 102/361 (28%), Gaps = 96/361 (26%)
Query: 66 QNHHHH------QQHLSLDAVISSNRKA--------ELLGDIKGSLSNRLSETNLHLTVP 111
+HHHH + ++S A ++ K LS E + +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMSK 58
Query: 112 GLKSKTRGKVRDIYDGGDYLV--LVTTDRQSAFDRILASI--PFKGQVLNETSLWWFDQT 167
S T + + +V V + + +++ I + + + +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM---YIEQ 115
Query: 168 RHITPNAVISSPDKNVTIAKK--------CSVIPVEFVV----RGFVTGST--------D 207
R N NV+ + + P + V+ G G T
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKTWVALDVCLS 173
Query: 208 TSLWTVYNKGI-----RNYCGNALPDGLVKN-QKLPANILTPTTKAEDH--DVPVTPDEI 259
+ + I +N P+ +++ QKL I T DH ++ + I
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 260 --VKLGLMTEAEFDEA--------SRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDS 309
L+ ++ + KA F + IL+ T++ K D
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-------ILLTTRF---KQVTDF 280
Query: 310 ILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPE 369
+ H + L P+ V K L + C P D P
Sbjct: 281 LSAATTTHIS-----------LDHHSMTLTPDEV-KSLLLKYL--DCRP------QDLPR 320
Query: 370 E 370
E
Sbjct: 321 E 321
Score = 40.6 bits (94), Expect = 7e-04
Identities = 58/386 (15%), Positives = 113/386 (29%), Gaps = 98/386 (25%)
Query: 62 QNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLH--LTVPGLKSKTRG 119
+ + + + + + SSN K + I+ L L L V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCLLV--------- 249
Query: 120 KVRDIYDGG--DYL-----VLVTTDRQSAFDRILASIPFKGQVLNETSLWWF--DQTRHI 170
+ ++ + + +L+TT + D + A+ + + D+ + +
Sbjct: 250 -LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT--HISLDHHSMTLTPDEVKSL 306
Query: 171 TPNAVISSPDKNVTIAKK-CSVIPVEFVVRGFVTGSTD-TSLWTVYNK-------GIRNY 221
+ P + ++ + P + D + W + I
Sbjct: 307 LLKYLDCRPQD---LPREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 222 CGNALPDGLVKN--QKL---PANILTPT-------TKAEDHDVPVTPDEIVKLGLMTEAE 269
N L + +L P + PT DV V +++ K L+ +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 270 FDEASRKALRLFEYGQRVASEHGL--ILVDTKYEFGKSSDDSILLIDEVHTPDSSRYW-- 325
+ E ++ +E+ L +VD Y K+ D D++ P +Y+
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDS-----DDLIPPYLDQYFYS 475
Query: 326 -IAH------SYEE-----------RF--------------QSGLEPENVDKEFLRLWFK 353
I H E RF + +F + +
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 354 DHCNPYEDEV------LPDAPEELIC 373
D+ YE V LP E LIC
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLIC 561
Score = 29.4 bits (65), Expect = 2.5
Identities = 38/295 (12%), Positives = 104/295 (35%), Gaps = 62/295 (21%)
Query: 15 PLHSNKISAPKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKNQNQNQNQNHHHHQQH 74
P + I+ + + +N+ ++ ++ ++ +++
Sbjct: 327 PRRLSIIAESI------------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 75 ---LSL---DAVISS--------NRKAELLGDI-----KGSLSNRLSETNLHLTVPGLKS 115
LS+ A I + + + + K SL + + +++P +
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-ESTISIPSIYL 433
Query: 116 KTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQT-RHITPNA 174
+ + K+ + Y +V D I + + +++ H+
Sbjct: 434 ELKVKLENEYALHRSIV----DH----YNIPKTFDSDDLIPPYLDQYFYSHIGHHL---- 481
Query: 175 VISSPDKNVTIAKKCSVIPVEFVVRGFV------TGSTDTSLWTVYN--KGIRNYCGNAL 226
KN+ ++ ++ + F+ F+ + + ++ N + ++ Y +
Sbjct: 482 ------KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-KPYI 534
Query: 227 PDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAE--FDEASRKALR 279
D K ++L IL K E++ + +++++ LM E E F+EA ++ R
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 9e-06
Identities = 65/411 (15%), Positives = 119/411 (28%), Gaps = 145/411 (35%)
Query: 5 MRTTLNPPKTPLHSNKISAPKLSFSSSFSSFGTKPNSSNSNNYPRIS--------LSVMS 56
+ L P T A +L F+ +P + + + L +S
Sbjct: 16 LEHVLLVP-TASFFI---ASQLQ--EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 57 NKNQNQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLH---LTVPGL 113
+ + Q D V++ L + + + L ++H +
Sbjct: 70 SLVEPSKVGQ----------FDQVLNL-----CLTEFE---NCYLEGNDIHALAAKLLQE 111
Query: 114 KSKTRGKVRDI---YDGGDYLVLVTTDR------QSAFDR-------ILASIPFKGQVLN 157
T K +++ Y + R SA R L +I F GQ
Sbjct: 112 NDTTLVKTKELIKNY----ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FGGQGNT 166
Query: 158 ETSLWWFDQTRHI--TPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYN 215
+ +F++ R + T + ++ D A+ S + + D V+
Sbjct: 167 DD---YFEELRDLYQTYHVLVG--DLIKFSAETLS---------ELIRTTLDAE--KVFT 210
Query: 216 KGI------RNYCGNALPD--------------GLVKNQKLPANILTPTTKAEDHDVPVT 255
+G+ N + PD G++ Q L A+ + T K T
Sbjct: 211 QGLNILEWLEN--PSNTPDKDYLLSIPISCPLIGVI--Q-L-AHYVV-TAKLLG----FT 259
Query: 256 PDEIVKL--GL----------------MTEAEFDEASRKALR-LFEYG---QRVASEHGL 293
P E+ G + F + RKA+ LF G L
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 294 ---ILVDTKYEFGKSSDDSIL------------LIDEV--HTPDSSRYWIA 327
IL D+ E + +L +++ H P + I+
Sbjct: 320 PPSILEDSL-ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Score = 40.8 bits (95), Expect = 8e-04
Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 68/184 (36%)
Query: 167 TRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNAL 226
TR +T +S + ++P T+ + + ++ L
Sbjct: 6 TRPLT----LSHGSLEHVL-----LVP--------------TASFFIASQ---------L 33
Query: 227 PDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVK--LGLMTE-------AEFDEASRKA 277
+ K LP PT D P TP E+V LG ++ +FD+
Sbjct: 34 QEQFNKI--LPE----PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 278 LRLFE--Y--GQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEER 333
L FE Y G + H L + LL + T ++ I + R
Sbjct: 88 LTEFENCYLEGNDI---HALA--------------AKLLQENDTTLVKTKELIKNYITAR 130
Query: 334 FQSG 337
+
Sbjct: 131 IMAK 134
Score = 31.9 bits (72), Expect = 0.44
Identities = 38/203 (18%), Positives = 58/203 (28%), Gaps = 82/203 (40%)
Query: 16 LHSNKISAPKLSFSSSFSSFGTKPNSS-----------NSNNYPRISLSVMSNKNQNQNQ 64
+ A + F + PN+S N+ P LS+ SN Q Q Q
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQ 350
Query: 65 NQ----NHH---HHQQHLSL-----DAVIS-----------------------------S 83
+ N H Q +SL + V+S S
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 84 NRKA---------------ELLGDIKGSLSNRLSETNL-----HLTVPGLKSKTRGKVRD 123
RK LL ++ L + N+ + +P V D
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP---------VYD 461
Query: 124 IYDGGDYLVLVTTDRQSAFDRIL 146
+DG D VL + + D I+
Sbjct: 462 TFDGSDLRVLSGSISERIVDCII 484
>1lni_A RNAse SA, guanyl-specific ribonuclease SA; hydrolase; 1.00A
{Streptomyces aureofaciens} SCOP: d.1.1.2 PDB: 1c54_A
1ay7_A 1rge_A* 1rgf_A 1rgg_A 1rgh_A 1t2h_A 1i70_A 1i8v_A
1ynv_X 1ucl_A 1ucj_A 1uck_A 1uci_A 1t2i_A 1box_A 1gmp_A*
1gmq_A 1gmr_A* 1rsn_A* ...
Length = 96
Score = 28.3 bits (63), Expect = 1.3
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 109 TVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRI 145
TV ++TRG R I T D + F I
Sbjct: 56 TVITPGARTRGTRRIITGEATQEDYYTGDHYATFSLI 92
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM
TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2;
2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B*
2qjk_B*
Length = 269
Score = 29.5 bits (66), Expect = 1.6
Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 16/123 (13%)
Query: 168 RHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDT----SLWTVYNKGIRNYCG 223
+ + A+ P+ + G S+ T + +
Sbjct: 88 HFPHSALENAPDLSLMAKARAGFHGPMGTGISQLFNGIGGPEYIYSVLTGFPEEPPKCAE 147
Query: 224 NALPDGLVKNQKLPANILTPTTKAEDH-----------DVPVTPDEIVKLGLMTEAEFDE 272
PDG N+ N P T + + P D++V+ +A
Sbjct: 148 GHEPDGFYYNRAFQ-NGSVPDTCKDANGVKTTAGSWIAMPPPLMDDLVEYADGHDASVHA 206
Query: 273 ASR 275
+
Sbjct: 207 MAE 209
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 29.2 bits (65), Expect = 2.2
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 20/176 (11%)
Query: 216 KGIRNYCGNALPDGLVKNQKLPANILTPT-TKAEDHDVPVTP-DEIVKLGLMTEAEFDEA 273
G + C A ++ L + + + D P++ ++ K GL + +
Sbjct: 82 VGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYS 141
Query: 274 SRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVH-------------TPD 320
+L + + + + + +++IDE H +
Sbjct: 142 LLNSLYKADV--IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDKVNELEERSLSEI 199
Query: 321 SSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELA 376
+ + I S E + L LR + E +P +E + LA
Sbjct: 200 TIQMAIKQSKSEESRRILSKLL---NQLREVVLPDEKYIKVENVPKLSKEELEILA 252
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid
biosynthesis, (S)-lysine biosynthesis VIA DAP PAT
(beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB:
4dpq_A*
Length = 360
Score = 29.2 bits (66), Expect = 2.3
Identities = 16/68 (23%), Positives = 21/68 (30%)
Query: 68 HHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDG 127
HHHH L + + E L N HL + L+ K R DI
Sbjct: 2 HHHHHHGLPIPNPLLGLDSTENLYFQGIDPFTAAVVPNFHLPMRSLEVKNRTNTDDIKAL 61
Query: 128 GDYLVLVT 135
+ T
Sbjct: 62 RVITAIKT 69
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane
protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Length = 107
Score = 27.5 bits (61), Expect = 2.7
Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 28 FSSSFS-SFGTKPNSSNSNNYPRISLSVMSNKNQNQNQNQNHHHH 71
+ S K S + S Q + +HHHH
Sbjct: 63 LVLALLLSVIPKEKGSVVEKSVQTEQSEGKGTTQESGKGHHHHHH 107
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease,
structural genomics; 2.70A {Staphylococcus aureus subsp}
Length = 515
Score = 28.9 bits (65), Expect = 2.8
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
Query: 236 LPANILTPTT-------KAEDHDVPVT---PDEIVKLG 263
+P N+LTP T ++ V V D +V G
Sbjct: 209 MPPNVLTPQTFAEDIVNHFKNTKVKVDVKDYDTLVSEG 246
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 28.9 bits (64), Expect = 2.8
Identities = 28/197 (14%), Positives = 54/197 (27%), Gaps = 32/197 (16%)
Query: 180 DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVK--NQKLP 237
K +AKK + L+ + + G D LV+ +
Sbjct: 76 KKEAKLAKK-------LGFDEEGS------LYVLKGDRTIEFDGEFAADVLVEFLLDLIE 122
Query: 238 ANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVD 297
+ +K E D+I +G F + + FE A
Sbjct: 123 DPVEIINSKLEVQAFERIEDQIKLIGF-----FKSEESEYYKAFE---EAAEHF-----Q 169
Query: 298 TKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCN 357
+F + D + + ++ E + +E L + K+H
Sbjct: 170 PYIKFFATFDKGVAKKLSLKMN-EVDFYEPFMDEPIAIPD---KPYTEEELVEFVKEHQR 225
Query: 358 PYEDEVLPDAPEELICE 374
P + P+ E +
Sbjct: 226 PTLRRLRPEDMFETWED 242
>3kys_B YAP65, 65 kDa YES-associated protein; immunoglobulin-like fold,
activator, disease mutation, DNA- binding, nucleus,
phosphoprotein, transcription; 2.80A {Homo sapiens} PDB:
3jua_B
Length = 125
Score = 27.6 bits (60), Expect = 3.3
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 10 NPPKTPLHSNKISAPKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKN-QNQNQNQNH 68
PP+ HS + S + + +S S +S ++ +
Sbjct: 51 KPPEPKSHSRQASTDAGTAGALTPQHVRAHSSPASLQLGAVSPGTLTPTGVVSGPAATPT 110
Query: 69 HHHQQHLSLD 78
H + S +
Sbjct: 111 AQHLRQSSFE 120
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 28.8 bits (65), Expect = 3.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 12/39 (30%)
Query: 292 GLILVDTKY--EFGK----------SSDDSILLIDEVHT 318
G +L TKY +F K +SIL IDE+HT
Sbjct: 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHT 289
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for
structural genomics, MCSG, H; 1.50A {Alicyclobacillus
acidocaldarius subsp}
Length = 216
Score = 28.3 bits (63), Expect = 3.8
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 6/106 (5%)
Query: 215 NKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEAS 274
N R + + + V + + + + ++ + D
Sbjct: 94 NDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMF---LLSPFYLEPNRSDPMR 150
Query: 275 RKALRLFEYGQRVASEHGLILVDTKYEF---GKSSDDSILLIDEVH 317
+ E + VA+ + VD + EF + +L D VH
Sbjct: 151 KTVDAYIEAMRDVAASEHVPFVDVQAEFDRLLAHLNTWVLAPDRVH 196
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 28.3 bits (63), Expect = 4.9
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 266 TEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYW 325
++E+ + + L G + I + F ++I LID+ + ++
Sbjct: 77 NDSEWRRFTEQYLDNPSDGILDKTRKIHIDYICDFIFDDERLENIYLIDKKN-LMRNKVQ 135
Query: 326 IAH 328
I
Sbjct: 136 IIQ 138
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A
{Candidatus cloacamonas acidaminovoransorganism_taxid}
PDB: 2y7d_A 2y7f_A* 2y7g_A
Length = 282
Score = 28.1 bits (62), Expect = 5.2
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 244 TTKAEDHDVPVTPDEIV 260
TT+A+ ++P+TP+E
Sbjct: 21 TTRADQPNLPITPEEQA 37
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic
reticulum, glycoprotein, redox-active center; 1.92A
{Rattus norvegicus}
Length = 250
Score = 27.8 bits (61), Expect = 6.1
Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 3/70 (4%)
Query: 300 YEFGKSSDDSILLIDEVHTPDSSRY---WIAHSYEERFQSGLEPENVDKEFLRLWFKDHC 356
Y+F + I +V YE R + + ++ + H
Sbjct: 55 YKFHHTFSTEIAKFLKVSLGKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHA 114
Query: 357 NPYEDEVLPD 366
P
Sbjct: 115 LPLVGHRKTS 124
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 27.8 bits (63), Expect = 6.3
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 257 DEIVKLGLMTEAEFDE 272
+ +K G++TE + +E
Sbjct: 437 ELCIKYGVLTEEQLNE 452
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein,
rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A
{Rhodobacter capsulatus}
Length = 258
Score = 27.6 bits (61), Expect = 7.3
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 8/65 (12%)
Query: 211 WTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEF 270
YNK + +PD + + P D+ V T A
Sbjct: 151 GYYYNKT---FQIGGVPDTCKDAAGVKITHGSWARMP-----PPLVDDQVTYEDGTPATV 202
Query: 271 DEASR 275
D+ ++
Sbjct: 203 DQMAQ 207
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Length = 478
Score = 27.5 bits (62), Expect = 7.5
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 257 DEIVKLGLMTEAEFDE 272
+ +++ GL+TEAE D+
Sbjct: 440 EVVLERGLLTEAELDD 455
>3fmb_A Dimeric protein of unknown function and ferredoxi fold;
YP_212648.1, stress responsive A/B barrel domain; HET:
MSE; 1.85A {Bacteroides fragilis}
Length = 118
Score = 26.3 bits (58), Expect = 8.2
Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 18/90 (20%)
Query: 67 NHHHHQQHLSLDAVI------------SSNRKAELLGDIKGSLSNRLSETNLHLTVPGLK 114
+HHHH ++L ++ K ++ K ++ L + ++
Sbjct: 7 HHHHHHENLYFQGMVKHIVLFKLRDDVPVEEKLVVMNSFKEAIE------ALPAKISVIR 60
Query: 115 SKTRGKVRDIYDGGDYLVLVTTDRQSAFDR 144
G + + + + D
Sbjct: 61 KIEVGLNMNPGETWNIALYSEFDNLDDVKF 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.391
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,725,056
Number of extensions: 340320
Number of successful extensions: 902
Number of sequences better than 10.0: 1
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 38
Length of query: 378
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 283
Effective length of database: 4,049,298
Effective search space: 1145951334
Effective search space used: 1145951334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.1 bits)