BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017033
(378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C042|Y4597_ARATH Uncharacterized protein At4g15970 OS=Arabidopsis thaliana
GN=At4g15970 PE=2 SV=1
Length = 367
Score = 295 bits (756), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 145/278 (52%), Positives = 179/278 (64%), Gaps = 10/278 (3%)
Query: 72 SLEKILKRAAMGDNTVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDSK 131
L KIL AA D TVIITTLN+AW+EPNS FD+FL SF G GT LL HLVV LD +
Sbjct: 41 KLGKILTEAATEDKTVIITTLNKAWSEPNSTFDLFLHSFHVGKGTKPLLRHLVVACLDEE 100
Query: 132 ALDHCLSTHPH-CYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVFTD 190
A C HPH CY + T G+DF+G + FMT YL+MMW RI L +L + YNF+FT
Sbjct: 101 AYSRCSEVHPHRCYFMKTPGIDFAG-DKMFMTPDYLKMMWRRIEFLGTLLKLRYNFIFTI 159
Query: 191 ADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKFWYNS 250
PF R + DFQIACDR+SG+ ++ N NGGF +VK+N RTI+FY +WY S
Sbjct: 160 --------PFPRLSKEVDFQIACDRYSGDDKDIHNAVNGGFAFVKANQRTIDFYNYWYMS 211
Query: 251 RKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTKYIAGFCQVSQDFNAVCTMHANCCFG 310
R +P HDQDVL++IK Y KI +K+RFLDTKY GFC+ S+D + VCTMHANCC G
Sbjct: 212 RLRYPDRHDQDVLDQIKGGGYPAKIGLKMRFLDTKYFGGFCEPSRDLDKVCTMHANCCVG 271
Query: 311 LEAKITDLRLALEDWRNFMELPPDQKSLPRSWTVPKKC 348
LE KI DLR + DW N++ +W P+ C
Sbjct: 272 LENKIKDLRQVIVDWENYVSAAKTTDGQIMTWRDPENC 309
>sp|Q3E6Y3|Y1869_ARATH Uncharacterized protein At1g28695 OS=Arabidopsis thaliana
GN=At1g28695 PE=2 SV=1
Length = 329
Score = 211 bits (537), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 161/281 (57%), Gaps = 16/281 (5%)
Query: 73 LEKILKRAAMGDN-TVIITTLNQAWAEP----NSIFDIFLESFRTGNGTGKLLDHLVVVA 127
LE L AA G+N TVIIT +N+A+ + +++ D+FLESF G GT LLDHL+VVA
Sbjct: 45 LEAALYTAAAGNNKTVIITMVNKAYVKEVGRGSTMLDLFLESFWEGEGTLPLLDHLMVVA 104
Query: 128 LDSKALDHCLSTHPHCYALNTS-GLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLAMGYNF 186
+D A D C HCY + T G+D G E FM+ ++EMMW R RL+ DVL GYN
Sbjct: 105 VDQTAYDRCRFKRLHCYKMETEDGVDLEG-EKVFMSKDFIEMMWRRTRLILDVLRRGYNV 163
Query: 187 VFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTIEFYKF 246
+FTD D++WL++P R + D QI+ DR + N GF +V+SNN+TI ++
Sbjct: 164 IFTDTDVMWLRSPLSRLNMSLDMQISVDRINVGG----QLINTGFYHVRSNNKTISLFQK 219
Query: 247 WYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTKYIAGFCQVSQDFNAVCTMHAN 306
WY+ R G+ +QDVL + + ++ + + FL T +GFCQ S V T+HAN
Sbjct: 220 WYDMRLNSTGMKEQDVLKNLLDSGFFNQLGLNVGFLSTTEFSGFCQDSPHMGVVTTVHAN 279
Query: 307 CCFGLEAKITDLRLALEDWRNFMELPPDQKSLP-----RSW 342
CC + AK+ DL L DW+ + + K P RSW
Sbjct: 280 CCLHIPAKVFDLTRVLRDWKRYKASHVNSKWSPHLKCSRSW 320
>sp|Q54RP0|AGTA_DICDI UDP-galactose:fucoside alpha-3-galactosyltransferase
OS=Dictyostelium discoideum GN=agtA PE=1 SV=1
Length = 648
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 21/78 (26%)
Query: 178 DVLAMGYNFVFTDADIVWLQNPFQRF------------DPDADFQIACDRFSGNSFNLRN 225
DVL GYN ++TD DIVW ++PF F D D D + D +
Sbjct: 120 DVLKKGYNVLWTDTDIVWKRDPFIHFYQDINQENQFTNDDDIDLYVQQD---------DD 170
Query: 226 EPNGGFNYVKSNNRTIEF 243
+ GF +++SN RTI+F
Sbjct: 171 DICAGFYFIRSNQRTIKF 188
>sp|P29800|MVP_TOML2 Movement protein OS=Tomato mosaic virus (strain LII) GN=MP PE=3
SV=1
Length = 264
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 276 QVKIRFLDTKYIAGFCQVSQDFNAVCTMHA-NCCFGLEAKITDLR------LALEDWRNF 328
QV + + K AG+C +S +F +VC ++ N GL K+T ++ L+ E F
Sbjct: 138 QVLVNIKNVKMSAGYCPLSLEFVSVCIVYKNNIKLGLREKVTSVKDGGPMELSEEVVDEF 197
Query: 329 MELPPDQKSLPRSWTVPKK 347
ME P L + T P K
Sbjct: 198 MENVPMSVRLAKFRTKPSK 216
>sp|P30737|MVP_TMVKR Movement protein OS=Tobacco mosaic virus (strain Korean NC 82)
GN=MP PE=3 SV=1
Length = 268
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 276 QVKIRFLDTKYIAGFCQVSQDFNAVCTMHA-NCCFGLEAKITDLR------LALEDWRNF 328
QV + + K AGFC +S +F +VC ++ N GL KIT++R L E F
Sbjct: 138 QVLVNIRNVKMSAGFCPLSLEFVSVCIVYRNNIKLGLREKITNVRDGGPMELTEEVVDEF 197
Query: 329 MELPP 333
ME P
Sbjct: 198 MEDVP 202
>sp|O91275|MVP_TMVB Movement protein OS=Tobacco mosaic virus (strain B935A) GN=MP PE=3
SV=1
Length = 268
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 276 QVKIRFLDTKYIAGFCQVSQDFNAVCTMHA-NCCFGLEAKITDLR------LALEDWRNF 328
QV + + K AGFC +S +F +VC ++ N GL KIT++R L E F
Sbjct: 138 QVLVNIRNVKMSAGFCPLSLEFVSVCIVYRNNIKLGLREKITNVRDGGPMELTEEVVDEF 197
Query: 329 MELPP 333
ME P
Sbjct: 198 MEDVP 202
>sp|P03583|MVP_TMV Movement protein OS=Tobacco mosaic virus (strain vulgare) GN=MP
PE=3 SV=1
Length = 268
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 276 QVKIRFLDTKYIAGFCQVSQDFNAVCTMHA-NCCFGLEAKITDLR------LALEDWRNF 328
QV + + K AGFC +S +F +VC ++ N GL KIT++R L E F
Sbjct: 138 QVLVNIRNVKMSAGFCPLSLEFVSVCIVYRNNIKLGLREKITNVRDGGPMELTEEVVDEF 197
Query: 329 MELPP 333
ME P
Sbjct: 198 MEDVP 202
>sp|Q98746|MVP_TMVRA Movement protein OS=Tobacco mosaic virus (strain Rakkyo) GN=MP PE=3
SV=1
Length = 268
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 276 QVKIRFLDTKYIAGFCQVSQDFNAVCTMHA-NCCFGLEAKITDLR------LALEDWRNF 328
QV + + K AGFC +S +F +VC ++ N GL KIT++R L E F
Sbjct: 138 QVLVNIRNVKMSAGFCPLSLEFVSVCIVYRNNIKIGLREKITNVRDGGPMELTEEVVDEF 197
Query: 329 MELPP 333
ME P
Sbjct: 198 MEDVP 202
>sp|P03582|MVP_TMVOM Movement protein OS=Tobacco mosaic virus (strain OM) GN=MP PE=3
SV=1
Length = 268
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 276 QVKIRFLDTKYIAGFCQVSQDFNAVCTMHA-NCCFGLEAKITDLR------LALEDWRNF 328
QV + + K AGFC +S +F +VC ++ N GL KIT +R L E F
Sbjct: 138 QVLVNIRNVKMSAGFCPLSLEFVSVCIVYRNNIKLGLREKITSVRDGGPMELTEEVVDEF 197
Query: 329 MELPPDQKSLP--RSWTVPKK-CRETPFHPPDES-PN 361
ME P L RS T K R+ D S PN
Sbjct: 198 MEDVPMSIRLAKFRSRTGKKSDVRKGKISSSDRSAPN 234
>sp|P53111|ARI1_YEAST NADPH-dependent aldehyde reductase ARI1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ARI1 PE=1 SV=1
Length = 347
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 38 FLYHTANPFEFLPRSSAYDVIAPSMKAQKSSNDPSLEKILKRAAMGDNTVIITTLNQAWA 97
+ HTA+PF F + D++ P++ KS LE I K AA VI+T+ A
Sbjct: 81 IVLHTASPFHFETTNFEKDLLTPAVNGTKS----ILEAIKKYAADTVEKVIVTSSTAALV 136
Query: 98 EPNSI 102
P +
Sbjct: 137 TPTDM 141
>sp|Q82Y30|HPRK_NITEU HPr kinase/phosphorylase OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=hprK PE=3 SV=1
Length = 323
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 92 LNQAWAEPNSIFDIFLESFRTGNGTGKLLDHL 123
LN W EP+++ D LE+ + N T +L+ HL
Sbjct: 17 LNLQWGEPSAVIDRQLENHQINNSTQELIGHL 48
>sp|Q5RA63|EIF2D_PONAB Eukaryotic translation initiation factor 2D OS=Pongo abelii
GN=EIF2D PE=2 SV=1
Length = 584
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 339 PRSWTVPKKCRETPFHPPDESPNSLPPAAPKISAQEGNNQ 378
P S T+ + RE P+HPPD P PA+ + QE ++
Sbjct: 362 PTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLFQESGHK 401
>sp|P41214|EIF2D_HUMAN Eukaryotic translation initiation factor 2D OS=Homo sapiens
GN=EIF2D PE=1 SV=3
Length = 584
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 339 PRSWTVPKKCRETPFHPPDESPNSLPPAAPKISAQEGNNQ 378
P S T+ + RE P+HPPD P PA+ + QE ++
Sbjct: 362 PTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLFQESGHK 401
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,671,113
Number of Sequences: 539616
Number of extensions: 6201612
Number of successful extensions: 13261
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 13247
Number of HSP's gapped (non-prelim): 15
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)