Query 017033
Match_columns 378
No_of_seqs 217 out of 366
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 97.8 0.00017 5.8E-09 70.6 12.5 165 85-268 3-172 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 97.4 0.00041 1.4E-08 65.9 8.5 163 85-268 4-173 (263)
3 1g9r_A Glycosyl transferase; a 96.6 0.0037 1.3E-07 59.9 7.4 178 88-285 3-206 (311)
4 3tzt_A Glycosyl transferase fa 96.5 0.0091 3.1E-07 56.5 9.6 179 88-284 8-210 (276)
5 2c0n_A A197; thermophil protei 46.1 17 0.00057 33.1 3.9 67 131-213 16-88 (203)
6 1fo8_A Alpha-1,3-mannosyl-glyc 40.6 2E+02 0.0068 27.6 11.0 111 86-204 5-121 (343)
7 3p9x_A Phosphoribosylglycinami 29.1 3E+02 0.01 24.6 9.5 44 100-147 13-59 (211)
8 1jkx_A GART;, phosphoribosylgl 25.4 3.5E+02 0.012 23.9 9.3 44 100-147 11-57 (212)
9 3kcq_A Phosphoribosylglycinami 24.2 3.5E+02 0.012 24.1 9.1 44 100-147 19-65 (215)
10 1meo_A Phosophoribosylglycinam 21.9 4.1E+02 0.014 23.4 9.9 44 100-147 11-57 (209)
11 3l9k_W Dynein intermediate cha 21.8 44 0.0015 22.3 1.8 31 157-187 7-37 (38)
12 3p0b_A TT1467 protein; glycosi 21.4 30 0.001 35.8 1.3 29 173-201 226-254 (540)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=97.79 E-value=0.00017 Score=70.60 Aligned_cols=165 Identities=19% Similarity=0.156 Sum_probs=91.0
Q ss_pred CeEEEE-EecccccCCCchHHHHHHHhhhccCCccccCcEEEEEcC---hHHHHHhHhcCCcEEEecCCCCCCCcchhcc
Q 017033 85 NTVIIT-TLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALD---SKALDHCLSTHPHCYALNTSGLDFSGKEAYF 160 (378)
Q Consensus 85 ~tVIvT-~~N~a~a~p~s~lDlfLes~r~g~~t~~l~~~llVvAlD---~~a~~~c~~~g~~cy~~~~~~~d~~~~~~~f 160 (378)
+...|| ++|..|.. + +-..+.|++.. ++ -..++|+..| ++..+.+++.+.....+..-...... ....
T Consensus 3 ~~a~vt~~~d~~Yl~-~--a~vl~~SL~~~-~s---~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~-~~~~ 74 (333)
T 1ll2_A 3 DQAFVTLTTNDAYAK-G--ALVLGSSLKQH-RT---SRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSA-HLTL 74 (333)
T ss_dssp SEEEEEEESSHHHHH-H--HHHHHHHHHHT-TC---CSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTT-HHHH
T ss_pred ceEEEEEEeCHHHHH-H--HHHHHHHHHHh-CC---CCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchh-hccc
Confidence 334444 46888851 1 12356677542 12 1345555443 56677777777555444321111111 1111
Q ss_pred ccHHHHHHHHHHHHHHHHHHHcCC-cEEEeeccEEeccCcccccCCCCcEEEeccCCCCCCCCCCCCCCceEEEEeeCHH
Q 017033 161 MTSSYLEMMWIRIRLLSDVLAMGY-NFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNR 239 (378)
Q Consensus 161 ~s~~yl~m~w~K~~~l~~vL~lGy-~vLftDvDVVWlRnPfp~~~~~aDi~issD~~~g~~~d~~~~~NtGf~yvRst~r 239 (378)
..+.+...++.|+.+.. + ..| .||+.|+|++.++|+-+.|..+ .+....|. | .....|+|++.++++..
T Consensus 75 ~~~~~~~~t~~Kl~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~-~~aAv~d~--~----~~~~fNsGvmlin~~~~ 144 (333)
T 1ll2_A 75 MKRPELGVTLTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE-ELSAAPDP--G----WPDCFNSGVFVYQPSVE 144 (333)
T ss_dssp HHCGGGHHHHHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC-SSEEEECS--S----STTSEEEEEEEECCCHH
T ss_pred ccccchHHHHHHHHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC-ceeEEecC--C----CCcceeeeEEEEeCCHH
Confidence 11112346777877664 2 345 5999999999999998888544 33333342 1 13478999999999865
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHc
Q 017033 240 TIEFYKFWYNSRKMFPGLHDQDVLNEIKF 268 (378)
Q Consensus 240 ti~f~~~W~~~r~~~p~~~DQ~vfN~il~ 268 (378)
+-+-+-.+.... ..-...||++||.+..
T Consensus 145 ~~~~l~~~~~~~-~~~~~~DQ~~LN~~f~ 172 (333)
T 1ll2_A 145 TYNQLLHVASEQ-GSFDGGDQGLLNTFFN 172 (333)
T ss_dssp HHHHHHHHHHHT-CCTTSSHHHHHHHHTT
T ss_pred HHHHHHHHHHhc-CCCCCCCHHHHHHHHH
Confidence 532222222211 1123579999999884
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=97.38 E-value=0.00041 Score=65.89 Aligned_cols=163 Identities=20% Similarity=0.159 Sum_probs=91.5
Q ss_pred CeEEEEE-ecccccCCCchHHHHHHHhhhccCCccccCcEEEEE---cChHHHHHhHhcCCcEEEecCCCCCCCcc--hh
Q 017033 85 NTVIITT-LNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVA---LDSKALDHCLSTHPHCYALNTSGLDFSGK--EA 158 (378)
Q Consensus 85 ~tVIvT~-~N~a~a~p~s~lDlfLes~r~g~~t~~l~~~llVvA---lD~~a~~~c~~~g~~cy~~~~~~~d~~~~--~~ 158 (378)
+...+|. +|..|.. | +-..+.|++.. ++. .+ ++|+. ++++..+.+++.+......+ ..+.... ..
T Consensus 4 ~~AyvTl~td~~Yl~-g--a~vL~~SL~~~-~s~--~~-lvvLvt~~vs~~~~~~L~~~~~~vi~V~--~l~~~~~~~~~ 74 (263)
T 3u2u_A 4 DQAFVTLTTNDAYAK-G--ALVLGSSLKQH-RTT--RR-LVVLATPQVSDSMRKVLETVFDEVIMVD--VLDSGDSAHLT 74 (263)
T ss_dssp TEEEEEEESSHHHHH-H--HHHHHHHHHHT-TCC--SE-EEEEECTTSCHHHHHHHHHHSSEEEECC--CCCCCCHHHHH
T ss_pred ceEEEEEEECHHHHH-H--HHHHHHHHHHh-CCC--CC-EEEEecCCCCHHHHHHHHHcCCeEEEee--ecCCcchhhhh
Confidence 4445554 4777751 1 12356677642 221 22 34443 34677788888775554433 2221110 00
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHcCC-cEEEeeccEEeccCcccccCCCCcEEEeccCCCCCCCCCCCCCCceEEEEeeC
Q 017033 159 YFMTSSYLEMMWIRIRLLSDVLAMGY-NFVFTDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSN 237 (378)
Q Consensus 159 ~f~s~~yl~m~w~K~~~l~~vL~lGy-~vLftDvDVVWlRnPfp~~~~~aDi~issD~~~g~~~d~~~~~NtGf~yvRst 237 (378)
....+.+ ..+|.|+.+.. ++ .| .||+.|+|++.++|.-+.|..+ .+....|.. .+..+|+|++.+.++
T Consensus 75 ~~~rp~~-~~~~~kl~~~~-l~--~~~~vlylD~D~~v~~~~~~Lf~~~-~~aA~~d~~------~~~~fNsGv~li~p~ 143 (263)
T 3u2u_A 75 LMKRPEL-GVTLTKLHCWS-LT--QYSKCVFMDADTLVLANIDDLFDRE-ELSAAPDPG------WPDCFNSGVFVYQPS 143 (263)
T ss_dssp HTTCTTG-GGGGGGGGGGG-CT--TCSEEEEECTTEEECSCCGGGGGSC-SSEEEECTT------STTSEEEEEEEECCC
T ss_pred hhcCcch-hHHhHHHHhcc-cc--CcceEEEEcCCEeeccCHHHHhCCC-cceEeccCC------CCccccCeEEEEccc
Confidence 1111111 23555665554 22 46 5999999999999988887654 344444421 134689999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHc
Q 017033 238 NRTIEFYKFWYNSRKMFPGLHDQDVLNEIKF 268 (378)
Q Consensus 238 ~rti~f~~~W~~~r~~~p~~~DQ~vfN~il~ 268 (378)
..+-+-+-+..... ..-...||++||.++.
T Consensus 144 ~~~~~~l~~~~~~~-~~~~~~DQd~LN~~f~ 173 (263)
T 3u2u_A 144 VETYNQLLHLASEQ-GSFDGGDQGILNTFFS 173 (263)
T ss_dssp HHHHHHHHHHHHHH-CCTTSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc-CCCCcccHHHHHHHhc
Confidence 65544333333322 2234589999999994
No 3
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=96.60 E-value=0.0037 Score=59.95 Aligned_cols=178 Identities=14% Similarity=0.189 Sum_probs=93.6
Q ss_pred EEEEecccccCCCchHHHHHHHh-hhccCCccccCcEEEEEcC--hHHHHHhHhc----CCcEEEecCCCCCCCcc-h-h
Q 017033 88 IITTLNQAWAEPNSIFDIFLESF-RTGNGTGKLLDHLVVVALD--SKALDHCLST----HPHCYALNTSGLDFSGK-E-A 158 (378)
Q Consensus 88 IvT~~N~a~a~p~s~lDlfLes~-r~g~~t~~l~~~llVvAlD--~~a~~~c~~~----g~~cy~~~~~~~d~~~~-~-~ 158 (378)
|+.++|..|.. -+-..+.|+ +. .+.. --++.|++.| ++..+.+++. +............+..- . .
T Consensus 3 I~~~~d~~Y~~---~~~vli~Sl~l~--~~~~-~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 76 (311)
T 1g9r_A 3 IVFAADDNYAA---YLCVAAKSVEAA--HPDT-EIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNI 76 (311)
T ss_dssp EEEEECGGGHH---HHHHHHHHHHHT--CTTS-CCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCCC
T ss_pred EEEECCHhHHH---HHHHHHHHHHHH--cCCC-CceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCcccc
Confidence 55667888862 223466777 43 2211 1234455544 6666666554 43333332221111110 0 1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHcCC-cEEEeeccEEeccCcccccCC---CCcEEEeccCCCC-CC--------CCCCC
Q 017033 159 YFMTSSYLEMMWIRIRLLSDVLAMGY-NFVFTDADIVWLQNPFQRFDP---DADFQIACDRFSG-NS--------FNLRN 225 (378)
Q Consensus 159 ~f~s~~yl~m~w~K~~~l~~vL~lGy-~vLftDvDVVWlRnPfp~~~~---~aDi~issD~~~g-~~--------~d~~~ 225 (378)
.+-+ ..++.|+.+ -++|. .| .||+.|+|++.++|.-+.+.. +.-+....|++.. .+ .....
T Consensus 77 ~~~s----~~~y~Rl~l-~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~ 150 (311)
T 1g9r_A 77 RHIS----ITTYARLKL-GEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEY 150 (311)
T ss_dssp TTCC----GGGGGGGGH-HHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSC
T ss_pred ccCC----HHHHHHHHH-HHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCCc
Confidence 1111 123335433 44453 44 599999999999998877753 2345444554321 00 01234
Q ss_pred CCCceEEEEeeCH----HHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCCCCceEEEEcccc
Q 017033 226 EPNGGFNYVKSNN----RTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDTK 285 (378)
Q Consensus 226 ~~NtGf~yvRst~----rti~f~~~W~~~r~~~p~~~DQ~vfN~il~~~~~~~~gl~v~~Ld~~ 285 (378)
..|+|++.+..+. ...+-+..|.......-...||+++|.+... ++..||..
T Consensus 151 yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f~~--------~~~~Lp~~ 206 (311)
T 1g9r_A 151 YFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKG--------GVCYANSR 206 (311)
T ss_dssp CEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHHTT--------SEEEECGG
T ss_pred eEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHHHHHcC--------CEEEcChh
Confidence 7899999998763 1223333454433222346799999998832 25677765
No 4
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=96.54 E-value=0.0091 Score=56.53 Aligned_cols=179 Identities=17% Similarity=0.189 Sum_probs=83.9
Q ss_pred EEEEecccccCCCchHHHHHHHhhhccCCccccCcEEEEEcC--hHHHHHhHhc----CCcEEEecCCCCCCCcchhccc
Q 017033 88 IITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALD--SKALDHCLST----HPHCYALNTSGLDFSGKEAYFM 161 (378)
Q Consensus 88 IvT~~N~a~a~p~s~lDlfLes~r~g~~t~~l~~~llVvAlD--~~a~~~c~~~----g~~cy~~~~~~~d~~~~~~~f~ 161 (378)
|+.++|..|.. -+-..+.|++.. +..---++.|+.-+ ++..+.+++. +............+.+ . -.
T Consensus 8 I~~~~d~~Y~~---~~~v~i~Sl~~~--~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~-~--~~ 79 (276)
T 3tzt_A 8 LLLTLDENYIP---QMKVLMTSIYIN--NPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSF-A--KV 79 (276)
T ss_dssp EEEECCGGGHH---HHHHHHHHHHHH--STTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred EEEEeCHhHHH---HHHHHHHHHHHh--CCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhc-C--cc
Confidence 67888999862 123356676542 11111123344433 4444444442 3322222221111221 0 01
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCC-cEEEeeccEEeccCcccccCCC---CcEEEeccCCCCCC---------CCCCCCCC
Q 017033 162 TSSYLEMMWIRIRLLSDVLAMGY-NFVFTDADIVWLQNPFQRFDPD---ADFQIACDRFSGNS---------FNLRNEPN 228 (378)
Q Consensus 162 s~~yl~m~w~K~~~l~~vL~lGy-~vLftDvDVVWlRnPfp~~~~~---aDi~issD~~~g~~---------~d~~~~~N 228 (378)
+..|...++.|+. +-+++...+ .||+.|+|++.++|.-+.+..+ .-+....|+..... .......|
T Consensus 80 ~~~~s~~~~~rl~-~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfN 158 (276)
T 3tzt_A 80 TDRYPKEMYYRLL-AGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYN 158 (276)
T ss_dssp ----CHHHHHHHT-HHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEE
T ss_pred ccccCHHHHHHHH-HHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEE
Confidence 1123334454543 334554445 6999999999999998877532 33555556533210 00125789
Q ss_pred ceEEEEeeCH-----HHHHHHHHHHHHHhcCCCCCchHHHHHHHcCCCCCCCceEEEEccc
Q 017033 229 GGFNYVKSNN-----RTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDT 284 (378)
Q Consensus 229 tGf~yvRst~-----rti~f~~~W~~~r~~~p~~~DQ~vfN~il~~~~~~~~gl~v~~Ld~ 284 (378)
+|++.+-.+. -+.+++ .|.......-...||++||.++.. ++..||.
T Consensus 159 sGV~linl~~~R~~~~~~~~~-~~~~~~~~~~~~~DQd~LN~~f~~--------~~~~Lp~ 210 (276)
T 3tzt_A 159 SGLLLINLKRAREEIDPDEIF-SFVEDNHMNLLLPDQDILNAMYGD--------RIYPLDD 210 (276)
T ss_dssp EEEEEEEHHHHHHHCCHHHHH-HHHHHC--------CHHHHHHHGG--------GEEEEEH
T ss_pred eeEEEEEHHHHHhhhHHHHHH-HHHHhccccccCCChhHHHHHHhC--------CEEECCc
Confidence 9999997764 122222 333321111235899999999842 3788886
No 5
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=46.08 E-value=17 Score=33.05 Aligned_cols=67 Identities=18% Similarity=0.236 Sum_probs=45.4
Q ss_pred HHHHHhHhcCCcEEEecCCCCCCCcchhccccHHHHHHHHHHHHHHHHHHH-cCCc-EEEeeccEEecc-Ccc---cccC
Q 017033 131 KALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLSDVLA-MGYN-FVFTDADIVWLQ-NPF---QRFD 204 (378)
Q Consensus 131 ~a~~~c~~~g~~cy~~~~~~~d~~~~~~~f~s~~yl~m~w~K~~~l~~vL~-lGy~-vLftDvDVVWlR-nPf---p~~~ 204 (378)
.....|.+.|+.++.... ++ -+...|..++.+.|+ .||+ ++|.|+|||=+. ||- ..+.
T Consensus 16 ~l~~~l~~~gi~~~l~~~-----~S-----------lI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~ 79 (203)
T 2c0n_A 16 PLIDFLVKNDIEYVILSR-----RN-----------HVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFN 79 (203)
T ss_dssp HHHHHHHHTTCCEEEECC-----CS-----------CHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEEcc-----cc-----------chHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHh
Confidence 456677788888876653 11 234568899999887 6986 889999955444 442 2234
Q ss_pred CCCcEEEec
Q 017033 205 PDADFQIAC 213 (378)
Q Consensus 205 ~~aDi~iss 213 (378)
.++|+++.+
T Consensus 80 ~g~DVV~Gs 88 (203)
T 2c0n_A 80 EGYDVVCGY 88 (203)
T ss_dssp HTCSEEEEE
T ss_pred CCCCEEEEE
Confidence 589999865
No 6
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=40.64 E-value=2e+02 Score=27.62 Aligned_cols=111 Identities=10% Similarity=0.066 Sum_probs=65.9
Q ss_pred eEEEEEecccccCCCchHHHHHHHhhhccCCccccCcEEEEEcCh---HHHHHhHhcCCcEEEecCCCCCC-Ccchhccc
Q 017033 86 TVIITTLNQAWAEPNSIFDIFLESFRTGNGTGKLLDHLVVVALDS---KALDHCLSTHPHCYALNTSGLDF-SGKEAYFM 161 (378)
Q Consensus 86 tVIvT~~N~a~a~p~s~lDlfLes~r~g~~t~~l~~~llVvAlD~---~a~~~c~~~g~~cy~~~~~~~d~-~~~~~~f~ 161 (378)
.|||.+.|.. . |...|++++.- ........+||+-|. ++.+.+++.+............. ...+...|
T Consensus 5 pViI~~yNRp-----~-l~~~L~sL~~~--~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g 76 (343)
T 1fo8_A 5 PILVIACDRS-----T-VRRCLDKLLHY--RPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRK 76 (343)
T ss_dssp CEEEEESSCT-----T-HHHHHHHHHHH--CSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGG
T ss_pred cEEEEECCcH-----H-HHHHHHHHHhc--CCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcC
Confidence 5888888854 3 67789998652 111234567887774 56666666432211111111111 10133445
Q ss_pred cHHHHHHHHHHHHHHHHHHH--cCCcEEEeeccEEeccCcccccC
Q 017033 162 TSSYLEMMWIRIRLLSDVLA--MGYNFVFTDADIVWLQNPFQRFD 204 (378)
Q Consensus 162 s~~yl~m~w~K~~~l~~vL~--lGy~vLftDvDVVWlRnPfp~~~ 204 (378)
.++|.++-..-...+..+.+ .+=.+|+.|-|.+.-.|=|.++.
T Consensus 77 ~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 77 FQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred cccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 56676665555566667666 56679999999999888787774
No 7
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=29.14 E-value=3e+02 Score=24.60 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=29.7
Q ss_pred CchHHHHHHHhhhccCCccccCcEEEEEcC---hHHHHHhHhcCCcEEEec
Q 017033 100 NSIFDIFLESFRTGNGTGKLLDHLVVVALD---SKALDHCLSTHPHCYALN 147 (378)
Q Consensus 100 ~s~lDlfLes~r~g~~t~~l~~~llVvAlD---~~a~~~c~~~g~~cy~~~ 147 (378)
|+-|.-.++.++.|+ +--.+++|..| ....++|++.|++++.+.
T Consensus 13 Gsnl~ali~~~~~~~----l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~ 59 (211)
T 3p9x_A 13 GTNAEAIIQSQKAGQ----LPCEVALLITDKPGAKVVERVKVHEIPVCALD 59 (211)
T ss_dssp CHHHHHHHHHHHTTC----CSSEEEEEEESCSSSHHHHHHHTTTCCEEECC
T ss_pred chHHHHHHHHHHcCC----CCcEEEEEEECCCCcHHHHHHHHcCCCEEEeC
Confidence 566777888887652 21234444434 467789999999998776
No 8
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=25.44 E-value=3.5e+02 Score=23.92 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=28.1
Q ss_pred CchHHHHHHHhhhccCCccc-cCcEEEEEc--ChHHHHHhHhcCCcEEEec
Q 017033 100 NSIFDIFLESFRTGNGTGKL-LDHLVVVAL--DSKALDHCLSTHPHCYALN 147 (378)
Q Consensus 100 ~s~lDlfLes~r~g~~t~~l-~~~llVvAl--D~~a~~~c~~~g~~cy~~~ 147 (378)
|+.+...++.++.|+ + .+=..|++- |....++|++.|++++...
T Consensus 11 gsnl~ali~~~~~~~----~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~ 57 (212)
T 1jkx_A 11 GSNLQAIIDACKTNK----IKGTVRAVFSNKADAFGLERARQAGIATHTLI 57 (212)
T ss_dssp CHHHHHHHHHHHTTS----SSSEEEEEEESCTTCHHHHHHHHTTCEEEECC
T ss_pred cHHHHHHHHHHHcCC----CCceEEEEEeCCCchHHHHHHHHcCCcEEEeC
Confidence 345666777776542 2 222334443 3457889999999999865
No 9
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=24.20 E-value=3.5e+02 Score=24.09 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=27.1
Q ss_pred CchHHHHHHHhhhccCCccc-cCcEEEEEc--ChHHHHHhHhcCCcEEEec
Q 017033 100 NSIFDIFLESFRTGNGTGKL-LDHLVVVAL--DSKALDHCLSTHPHCYALN 147 (378)
Q Consensus 100 ~s~lDlfLes~r~g~~t~~l-~~~llVvAl--D~~a~~~c~~~g~~cy~~~ 147 (378)
|+.+.-.++.++.| .+ .+=.+|++- |....+++++.|++++...
T Consensus 19 gsnl~all~~~~~~----~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~ 65 (215)
T 3kcq_A 19 GSNLEALAKAFSTE----ESSVVISCVISNNAEARGLLIAQSYGIPTFVVK 65 (215)
T ss_dssp CHHHHHHHHHTCCC-----CSEEEEEEEESCTTCTHHHHHHHTTCCEEECC
T ss_pred cHHHHHHHHHHHcC----CCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeC
Confidence 45566677766543 22 222344442 4456789999999999765
No 10
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=21.87 E-value=4.1e+02 Score=23.40 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=27.5
Q ss_pred CchHHHHHHHhhhccCCccccCcE-EEEEcC--hHHHHHhHhcCCcEEEec
Q 017033 100 NSIFDIFLESFRTGNGTGKLLDHL-VVVALD--SKALDHCLSTHPHCYALN 147 (378)
Q Consensus 100 ~s~lDlfLes~r~g~~t~~l~~~l-lVvAlD--~~a~~~c~~~g~~cy~~~ 147 (378)
|+.|...++.++.|+ +--.+ +|++-- ....++|++.|++++.+.
T Consensus 11 Gs~L~aLi~~~~~~~----~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~ 57 (209)
T 1meo_A 11 GSNLQALIDSTREPN----SSAQIDIVISNKAAVAGLDKAERAGIPTRVIN 57 (209)
T ss_dssp CTTHHHHHHHHHSTT----CSCEEEEEEESSTTCHHHHHHHHTTCCEEECC
T ss_pred chHHHHHHHHHhcCC----CCcEEEEEEeCCCChHHHHHHHHcCCCEEEEC
Confidence 456777788776542 11123 344332 346788999999998765
No 11
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=21.76 E-value=44 Score=22.28 Aligned_cols=31 Identities=6% Similarity=0.190 Sum_probs=26.7
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHcCCcEE
Q 017033 157 EAYFMTSSYLEMMWIRIRLLSDVLAMGYNFV 187 (378)
Q Consensus 157 ~~~f~s~~yl~m~w~K~~~l~~vL~lGy~vL 187 (378)
.....|.+|....-+..+++.+.|.-.|+++
T Consensus 7 ~~I~~S~~F~~F~~rsskviERAL~e~yDi~ 37 (38)
T 3l9k_W 7 QMIILSENFQRFVVRAGRVIERALSENVDIY 37 (38)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHccccccc
Confidence 4567789999999999999999999888864
No 12
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=21.42 E-value=30 Score=35.85 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCcEEEeeccEEeccCccc
Q 017033 173 IRLLSDVLAMGYNFVFTDADIVWLQNPFQ 201 (378)
Q Consensus 173 ~~~l~~vL~lGy~vLftDvDVVWlRnPfp 201 (378)
..+...+-+.|+..+|+|...+-...|.|
T Consensus 226 ~~l~~~L~~~Gi~y~~vd~~~~~~~~~~p 254 (540)
T 3p0b_A 226 PGVDELLMRAGIRYTFVDAHLVQGGEPLS 254 (540)
T ss_dssp CCHHHHHHHTTCCEEEECTHHHHCSSCCC
T ss_pred hhHHHHHHHcCCeEEEECchhhccCCCCC
Confidence 35677788999999999999888776655
Done!