Query 017035
Match_columns 378
No_of_seqs 414 out of 1583
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 07:52:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 1.3E-30 4.4E-35 225.5 15.2 117 200-316 7-124 (130)
2 1gcc_A Ethylene responsive ele 99.9 1.7E-22 5.7E-27 154.6 5.8 58 70-127 2-62 (63)
3 4i1k_A B3 domain-containing tr 99.7 1.1E-17 3.9E-22 147.2 13.1 89 202-299 44-132 (146)
4 1yel_A AT1G16640; CESG, protei 99.6 6E-16 2.1E-20 128.2 10.1 85 202-296 6-90 (104)
5 1na6_A Ecorii, restriction end 94.0 0.051 1.8E-06 54.5 5.1 93 202-295 16-123 (404)
6 1u3e_M HNH homing endonuclease 89.2 0.0073 2.5E-07 53.5 -6.5 57 51-109 90-146 (174)
7 3igm_B PF14_0633 protein; AP2 86.1 0.33 1.1E-05 37.9 2.1 28 66-93 3-31 (77)
8 3oug_A Aspartate 1-decarboxyla 45.5 1.3E+02 0.0045 25.0 9.0 74 206-293 13-91 (114)
9 1z1b_A Integrase; protein-DNA 45.1 17 0.00058 33.6 4.0 41 73-115 15-55 (356)
10 3m7a_A Uncharacterized protein 38.1 55 0.0019 27.9 5.8 46 244-292 84-140 (140)
11 2k75_A Uncharacterized protein 37.3 45 0.0015 26.7 4.9 30 244-293 40-69 (106)
12 1pqh_A Aspartate 1-decarboxyla 37.3 2E+02 0.0068 24.7 9.5 74 206-293 27-105 (143)
13 3k2y_A Uncharacterized protein 37.0 27 0.00094 28.6 3.6 41 281-336 26-66 (109)
14 3o27_A Putative uncharacterize 36.3 42 0.0014 25.4 4.1 40 267-308 23-62 (68)
15 2qcp_X Cation efflux system pr 36.2 43 0.0015 25.7 4.4 25 282-306 52-76 (80)
16 2vb2_X Copper protein, cation 36.1 40 0.0014 26.4 4.3 25 282-306 60-84 (88)
17 2c45_A Aspartate 1-decarboxyla 34.6 2.2E+02 0.0075 24.4 9.3 75 205-293 9-88 (139)
18 1eik_A RNA polymerase subunit 31.8 59 0.002 25.2 4.5 30 277-307 44-73 (77)
19 4ayb_H DNA-directed RNA polyme 28.0 81 0.0028 24.7 4.7 31 277-308 50-80 (84)
20 3jtz_A Integrase; four strande 28.0 1.7E+02 0.0058 22.6 6.7 42 74-115 28-75 (88)
21 1oa8_A Ataxin-1; RNA binding, 26.6 8.7 0.0003 32.9 -1.2 29 265-293 87-125 (133)
22 1hmj_A RPB5, protein (subunit 26.2 63 0.0022 25.1 3.7 30 277-307 42-71 (78)
23 3e0e_A Replication protein A; 26.1 76 0.0026 24.8 4.4 33 244-292 40-72 (97)
24 2e63_A KIAA1787 protein; struc 25.6 38 0.0013 29.7 2.7 23 282-304 116-138 (170)
25 3pjy_A Hypothetical signal pep 24.2 1.8E+02 0.0062 24.4 6.7 46 244-292 70-126 (136)
26 3dm3_A Replication factor A; p 24.1 91 0.0031 24.9 4.5 35 244-295 43-77 (105)
27 2ftc_I Mitochondrial ribosomal 21.8 1.1E+02 0.0038 25.3 4.7 37 81-117 79-115 (118)
28 2k50_A Replication factor A re 21.5 1.5E+02 0.0051 23.3 5.4 38 244-295 45-82 (115)
29 3ngh_A PDZ domain-containing p 21.1 1E+02 0.0034 23.6 4.2 48 246-293 5-53 (106)
30 1x60_A Sporulation-specific N- 20.4 57 0.0019 24.0 2.4 23 91-113 46-68 (79)
31 2l66_A SSO7C4, transcriptional 20.2 91 0.0031 21.7 3.4 20 277-296 19-38 (53)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.97 E-value=1.3e-30 Score=225.55 Aligned_cols=117 Identities=76% Similarity=1.252 Sum_probs=107.0
Q ss_pred hccccceeeeccccCCCCCCCceeechhhHhhcCCCCCCC-CCCceEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHH
Q 017035 200 LKARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS-TSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRF 278 (378)
Q Consensus 200 ~~~~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~~~~~-~~~gv~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~F 278 (378)
.+++.++|.|+||+|||+++++|+||++++++|||.++.. ..+++.|.++|.+|++|+|+|+||+++++|+|++||..|
T Consensus 7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F 86 (130)
T 1wid_A 7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF 86 (130)
T ss_dssp -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence 4688999999999999998899999999999999999853 356799999999999999999999989999999999999
Q ss_pred HhhcCCCCCCEEEEEEecCCCceEEEEEeeecCCCCCC
Q 017035 279 VKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPIENP 316 (378)
Q Consensus 279 Vk~k~Lk~GD~I~F~r~~~~~~~l~i~~r~~~~~~~~~ 316 (378)
|++|+|++||+|+|+++.+++.+|+|++|++.+..+++
T Consensus 87 V~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~~~~ 124 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDA 124 (130)
T ss_dssp HHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCSSCC
T ss_pred HHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCCccc
Confidence 99999999999999999888899999999998765433
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.86 E-value=1.7e-22 Score=154.60 Aligned_cols=58 Identities=48% Similarity=0.799 Sum_probs=55.2
Q ss_pred ceEEeEECCCCeEEEEEEe---CCeEEEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 017035 70 KYKGVVPQPNGRWGAQIYE---KHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQI 127 (378)
Q Consensus 70 ~yrGV~~~~~grW~A~I~~---~gkr~~LGtf~t~EeAArAYD~Aa~~~~G~~a~~NFp~~ 127 (378)
+||||++++||||+|+|++ +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999999999999999 479999999999999999999999999999999999973
No 3
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.74 E-value=1.1e-17 Score=147.24 Aligned_cols=89 Identities=25% Similarity=0.383 Sum_probs=78.1
Q ss_pred cccceeeeccccCCCCCCCceeechhhHhhcCCCCCCCCCCceEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHhh
Q 017035 202 ARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKE 281 (378)
Q Consensus 202 ~~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~~~~~~~~gv~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk~ 281 (378)
...+.|.|+||+|||.+.++|.||++++++|||... ..+.+.|. |+.|.|+|+|++. +++|++||..||++
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 456899999999999988899999999999999764 35677787 5999999999863 79999999999999
Q ss_pred cCCCCCCEEEEEEecCCC
Q 017035 282 KNLKAGDIVSFHRSTGGD 299 (378)
Q Consensus 282 k~Lk~GD~I~F~r~~~~~ 299 (378)
|+|++||+|+|......+
T Consensus 115 n~L~~GD~cvFeli~~~~ 132 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRD 132 (146)
T ss_dssp TTCCTTCEEEEEECSSSS
T ss_pred cCCCCCCEEEEEEecCCc
Confidence 999999999998876433
No 4
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.64 E-value=6e-16 Score=128.15 Aligned_cols=85 Identities=25% Similarity=0.422 Sum_probs=72.3
Q ss_pred cccceeeeccccCCCCCCCceeechhhHhhcCCCCCCCCCCceEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHhh
Q 017035 202 ARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKE 281 (378)
Q Consensus 202 ~~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~~~~~~~~gv~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk~ 281 (378)
...+.|.|+|+++|. ..+|.||+.+++.|.|.+. ..+.++|..|++|.++|+++ ..+++|++||.+||++
T Consensus 6 ~~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~------~~v~L~~~~G~~W~v~~~~~--~~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 6 TGEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP------ITVDLLDYSGRSWTVRMKKR--GEKVFLTVGWENFVKD 75 (104)
T ss_dssp CCCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC------SEEEEEETTSCEEEEEEEEE--TTEEEECTTHHHHHHH
T ss_pred CCCCCEEEEECCCCc--cceEECCHHHHHhcCccCC------CEEEEECCCCCEEEEEEEEE--CCcEEEccChHHHHHH
Confidence 345789999999994 4599999999977654433 35788999999999999976 4578999999999999
Q ss_pred cCCCCCCEEEEEEec
Q 017035 282 KNLKAGDIVSFHRST 296 (378)
Q Consensus 282 k~Lk~GD~I~F~r~~ 296 (378)
|+|++||.|+|....
T Consensus 76 ~~L~~GD~lvF~~~~ 90 (104)
T 1yel_A 76 NNLEDGKYLQFIYDR 90 (104)
T ss_dssp HTCCTTCEEEEEECS
T ss_pred cCCCCCCEEEEEEcC
Confidence 999999999998764
No 5
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.96 E-value=0.051 Score=54.51 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=67.5
Q ss_pred cccceeeeccccCCCC----CCCceeechhhHhhcCCCCC-CC-CCCceEE--EEEeCCCCeEEEEEEEec------CCC
Q 017035 202 ARDQLFEKAVTPSDVG----KLNRLVIPKQHAEKHFPLQS-GS-TSKGLLL--NFEDVTGKVWRFRYSYWN------SSQ 267 (378)
Q Consensus 202 ~~~~lF~K~LT~SDV~----~~~rLvIPk~~ae~~lP~~~-~~-~~~gv~l--~v~D~~Gk~W~Fr~s~~~------~s~ 267 (378)
.-...|.|.|+..|++ ++..+.||+..+..+||.+. .. ....+.+ .+-|.+.-.+.++++|.+ ...
T Consensus 16 ~~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRn 95 (404)
T 1na6_A 16 ENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRN 95 (404)
T ss_dssp SSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCC
T ss_pred ccchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCC
Confidence 3467899999999998 77789999988889998887 22 2222333 344554455599999996 346
Q ss_pred ceEEecCHHH-HHhhcCCCCCCEEEEEEe
Q 017035 268 SYVLTKGWSR-FVKEKNLKAGDIVSFHRS 295 (378)
Q Consensus 268 ~yvLt~GW~~-FVk~k~Lk~GD~I~F~r~ 295 (378)
.|.|+. |.+ +.--+...+||.++|-+.
T Consensus 96 EyRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 96 EKRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred ceEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 799995 554 555578899999999765
No 6
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=89.19 E-value=0.0073 Score=53.49 Aligned_cols=57 Identities=9% Similarity=-0.138 Sum_probs=39.5
Q ss_pred eecccccccccccCCCCCCceEEeEECCCCeEEEEEEeCCeEEEecCCCCHHHHHHHHH
Q 017035 51 VILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYD 109 (378)
Q Consensus 51 ~v~~~en~~n~~~~~~~~S~yrGV~~~~~grW~A~I~~~gkr~~LGtf~t~EeAArAYD 109 (378)
.++.++|..++........ ++||.....++|.+.|..+ +..+||.|.+.+|||++|.
T Consensus 90 ~~t~~eN~~~~~~~~~~~~-~~g~~~~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 90 WVTQKINVENQMSRGTLNV-SKAQQIAKIKNQKPIIVIS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp EECHHHHHHHHHHHTCCCC-HHHHHHHHHHTCCCEEEEC-TTSCEEEESCHHHHHHHHT
T ss_pred ECCHHHHhhcccccCcccc-eeeeeeccCCCCceEEEEc-CCceEEeeCCHHHHHHHHC
Confidence 4556777766554433322 4566442245688999888 7788999999999999964
No 7
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=86.12 E-value=0.33 Score=37.86 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=23.3
Q ss_pred CCCCceEEeEECC-CCeEEEEEEeCCeEE
Q 017035 66 LPSSKYKGVVPQP-NGRWGAQIYEKHQRV 93 (378)
Q Consensus 66 ~~~S~yrGV~~~~-~grW~A~I~~~gkr~ 93 (378)
..+|+|.||++.+ .+.|.|+-.+++++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 3579999999885 799999999888765
No 8
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=45.52 E-value=1.3e+02 Score=24.96 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=53.3
Q ss_pred eeeeccccCCCCCCCceeechhhHhhc--CCCCCCCCCCceEEEEEeC-CCCeEEEEEEEec--CCCceEEecCHHHHHh
Q 017035 206 LFEKAVTPSDVGKLNRLVIPKQHAEKH--FPLQSGSTSKGLLLNFEDV-TGKVWRFRYSYWN--SSQSYVLTKGWSRFVK 280 (378)
Q Consensus 206 lF~K~LT~SDV~~~~rLvIPk~~ae~~--lP~~~~~~~~gv~l~v~D~-~Gk~W~Fr~s~~~--~s~~yvLt~GW~~FVk 280 (378)
|-.-++|..|+...+-+.|..+.++.. +|. ..+.++|. +|..|. .|.+.. .|..-.|.+ .-
T Consensus 13 IHratVT~a~L~Y~GSitID~~Ll~aA~i~~~--------E~V~I~NvnNG~Rf~-TYvI~GerGSg~I~lNG-----AA 78 (114)
T 3oug_A 13 ISYATVTGKDLFYVGSITIDSEIMKQANIIEN--------EKVQVVNLNNGERLE-TYVIKGEPNSKTIALNG-----PA 78 (114)
T ss_dssp EEEEECCEEESSCC-CEEEEHHHHHHTTCCTT--------BEEEEEETTTCCEEE-EEEEEECTTSCCEEEEG-----GG
T ss_pred hcceEEecccccccceEEECHHHHHHcCCCcC--------CEEEEEECCCCceEE-EEEEEccCCCCEEEeCC-----HH
Confidence 455679999999999999999998774 332 34788887 687665 344553 345567766 36
Q ss_pred hcCCCCCCEEEEE
Q 017035 281 EKNLKAGDIVSFH 293 (378)
Q Consensus 281 ~k~Lk~GD~I~F~ 293 (378)
++..++||.|++.
T Consensus 79 Ar~~~~GD~vII~ 91 (114)
T 3oug_A 79 ARRCEIGDQLFII 91 (114)
T ss_dssp GGGCCTTCEEEEE
T ss_pred HhccCCCCEEEEE
Confidence 7888999999985
No 9
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=45.07 E-value=17 Score=33.59 Aligned_cols=41 Identities=15% Similarity=0.056 Sum_probs=30.9
Q ss_pred EeEECCCCeEEEEEEeCCeEEEecCCCCHHHHHHHHHHHHHhh
Q 017035 73 GVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRF 115 (378)
Q Consensus 73 GV~~~~~grW~A~I~~~gkr~~LGtf~t~EeAArAYD~Aa~~~ 115 (378)
||++++.|.|..+....|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5777778999988777899999996 8888876665554443
No 10
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=38.11 E-value=55 Score=27.93 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=31.5
Q ss_pred eEEEEEeCCCCeEEEEEEE--e-------cCCCceEE--ecCHHHHHhhcCCCCCCEEEE
Q 017035 244 LLLNFEDVTGKVWRFRYSY--W-------NSSQSYVL--TKGWSRFVKEKNLKAGDIVSF 292 (378)
Q Consensus 244 v~l~v~D~~Gk~W~Fr~s~--~-------~~s~~yvL--t~GW~~FVk~k~Lk~GD~I~F 292 (378)
+.|.+.|.+|++-...-.. | ...-.||| ..|| +.+.++++||.|.|
T Consensus 84 LDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 84 LDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred eEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 7788888888776664211 1 11246888 4555 48999999999875
No 11
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=37.33 E-value=45 Score=26.65 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=24.6
Q ss_pred eEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHhhcCCCCCCEEEEE
Q 017035 244 LLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFH 293 (378)
Q Consensus 244 v~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk~k~Lk~GD~I~F~ 293 (378)
..+.+-|..| ..+++.|+.. |++||+|.+.
T Consensus 40 ~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ 69 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRID 69 (106)
T ss_dssp EEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEE
T ss_pred EEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEE
Confidence 4578899999 5888888543 9999999996
No 12
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=37.32 E-value=2e+02 Score=24.75 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=53.8
Q ss_pred eeeeccccCCCCCCCceeechhhHhhc--CCCCCCCCCCceEEEEEeC-CCCeEEEEEEEec--CCCceEEecCHHHHHh
Q 017035 206 LFEKAVTPSDVGKLNRLVIPKQHAEKH--FPLQSGSTSKGLLLNFEDV-TGKVWRFRYSYWN--SSQSYVLTKGWSRFVK 280 (378)
Q Consensus 206 lF~K~LT~SDV~~~~rLvIPk~~ae~~--lP~~~~~~~~gv~l~v~D~-~Gk~W~Fr~s~~~--~s~~yvLt~GW~~FVk 280 (378)
|-.-++|..|+...+-+.|..+.++.. +|. ..+.++|. +|..|. .|.+.. .|..-.|.+ .-
T Consensus 27 IHRatVT~AdL~Y~GSITID~dLldaAgIl~~--------EkV~IvNvnNG~Rfe-TYvI~GerGSG~I~lNG-----AA 92 (143)
T 1pqh_A 27 LHRVKVTHADLHYEGTCAIDQDFLDAAGILEN--------EAIDIWNVTNGKRFS-TYAIAAERGSRIISVNG-----AA 92 (143)
T ss_dssp EEEEECCBCCSSSCCCEEEEHHHHHHHTCCTT--------CEEEEEETTTCCEEE-EEEEEECTTCCCEECCG-----GG
T ss_pred hcceEEeccccccceeEEECHHHHHHcCCCCC--------CEEEEEECCCCceEE-EEEEEccCCCceEEech-----HH
Confidence 445579999999999999999998774 443 33788887 577665 345553 345566665 47
Q ss_pred hcCCCCCCEEEEE
Q 017035 281 EKNLKAGDIVSFH 293 (378)
Q Consensus 281 ~k~Lk~GD~I~F~ 293 (378)
++..++||.|++.
T Consensus 93 Arl~~~GD~VII~ 105 (143)
T 1pqh_A 93 AHCASVGDIVIIA 105 (143)
T ss_dssp GGTCCTTCEEEEE
T ss_pred HccCCCCCEEEEE
Confidence 7889999999984
No 13
>3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum}
Probab=36.97 E-value=27 Score=28.60 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=26.9
Q ss_pred hcCCCCCCEEEEEEecCCCceEEEEEeeecCCCCCCCCCceeeeeeceeeeeccCC
Q 017035 281 EKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPIENPVEPVQMMRLFGVNIFKIPGN 336 (378)
Q Consensus 281 ~k~Lk~GD~I~F~r~~~~~~~l~i~~r~~~~~~~~~~~~~k~vrlfG~~~~~~p~~ 336 (378)
-+.|++||.|.|.|+.+. .+ +..+.+..-..|..|+|.|..
T Consensus 26 ~~~L~~Ge~l~L~rEp~N--~y-------------D~nAI~V~~~~g~kvGYvPr~ 66 (109)
T 3k2y_A 26 LTTLRVGMAVLLQRESGN--QY-------------DDNAISVWTLQHAKLGYIARY 66 (109)
T ss_dssp TTSCCTTCEEEEEECTTC--SS-------------CTTCEEEECTTCCEEEEECGG
T ss_pred hhcCCCCCEEEEEECCCC--cC-------------ChhHEEEEeCCCCEEEEecHH
Confidence 468999999999998432 12 112222222358999999974
No 14
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=36.28 E-value=42 Score=25.43 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=28.8
Q ss_pred CceEEecCHHHHHhhcCCCCCCEEEEEEecCCCceEEEEEee
Q 017035 267 QSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKA 308 (378)
Q Consensus 267 ~~yvLt~GW~~FVk~k~Lk~GD~I~F~r~~~~~~~l~i~~r~ 308 (378)
..|.|+= =.++++.-+|+.||.+.+.-++ .++.+.+.+||
T Consensus 23 etyYInI-PaeI~kaLgIk~gD~fel~ve~-kdgeIvLcykR 62 (68)
T 3o27_A 23 TTFYLLI-PKDIAEALDIKPDDTFILNMEQ-KDGDIVLSYKR 62 (68)
T ss_dssp CCEEEEE-CHHHHHHTTCCTTCCEEEEEEE-ETTEEEEEEEE
T ss_pred eEEEEeC-cHHHHHHhCCCCCCEEEEEEec-CCCeEEEEehh
Confidence 3455543 2679999999999999998763 34556666665
No 15
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=36.21 E-value=43 Score=25.72 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=17.0
Q ss_pred cCCCCCCEEEEEEecCCCceEEEEE
Q 017035 282 KNLKAGDIVSFHRSTGGDRQLYIDW 306 (378)
Q Consensus 282 k~Lk~GD~I~F~r~~~~~~~l~i~~ 306 (378)
.+|++||.|.|.-...++......+
T Consensus 52 ~~lk~Gd~V~F~~~~~~~~~~it~i 76 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQGNLSLLQDI 76 (80)
T ss_dssp CCCCTTCEEEEEEEEETTEEEEEEE
T ss_pred hcCCCCCEEEEEEEEeCCEEEEEEE
Confidence 5799999999976654544333443
No 16
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=36.06 E-value=40 Score=26.39 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=17.0
Q ss_pred cCCCCCCEEEEEEecCCCceEEEEE
Q 017035 282 KNLKAGDIVSFHRSTGGDRQLYIDW 306 (378)
Q Consensus 282 k~Lk~GD~I~F~r~~~~~~~l~i~~ 306 (378)
.+|++||.|.|.-...++......+
T Consensus 60 ~~lk~Gd~V~F~~~~~~~~~~it~i 84 (88)
T 2vb2_X 60 SEIKTGDKVAFNFVQQGNLSLLQDI 84 (88)
T ss_dssp CCCCTTCEEEEEEEEETTEEEEEEE
T ss_pred hcCCCCCEEEEEEEEeCCEEEEEEE
Confidence 5799999999976654544333443
No 17
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=34.62 E-value=2.2e+02 Score=24.39 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=55.0
Q ss_pred ceeeeccccCCCCCCCceeechhhHhhc--CCCCCCCCCCceEEEEEeC-CCCeEEEEEEEec--CCCceEEecCHHHHH
Q 017035 205 QLFEKAVTPSDVGKLNRLVIPKQHAEKH--FPLQSGSTSKGLLLNFEDV-TGKVWRFRYSYWN--SSQSYVLTKGWSRFV 279 (378)
Q Consensus 205 ~lF~K~LT~SDV~~~~rLvIPk~~ae~~--lP~~~~~~~~gv~l~v~D~-~Gk~W~Fr~s~~~--~s~~yvLt~GW~~FV 279 (378)
.|-.-++|..|+...+-+.|-.+.++.. +|.- .+.++|. +|..|. .|.+.. .|..-.|.+.
T Consensus 9 KIHRatVT~AdL~Y~GSITID~dLldaAgIl~~E--------kV~IvNvnNG~Rfe-TYvI~GerGSG~I~lNGA----- 74 (139)
T 2c45_A 9 KIHRATVTCADLHYVGSVTIDADLMDAADLLEGE--------QVTIVDIDNGARLV-TYAITGERGSGVIGINGA----- 74 (139)
T ss_dssp EEEEEECCCEESSSCCEEEEEHHHHHHTTCCSSC--------CEEEEETTTCCEEE-ECEEEECTTTTCEEEESS-----
T ss_pred cccceEEeccccccceeeEECHHHHHHcCCCCCC--------EEEEEECCCCceEE-EEEEEccCCCCEEEEchH-----
Confidence 3556689999999999999999998774 4433 2678887 577665 344543 3455777764
Q ss_pred hhcCCCCCCEEEEE
Q 017035 280 KEKNLKAGDIVSFH 293 (378)
Q Consensus 280 k~k~Lk~GD~I~F~ 293 (378)
-++..++||.|+++
T Consensus 75 AArl~~~GD~vII~ 88 (139)
T 2c45_A 75 AAHLVHPGDLVILI 88 (139)
T ss_dssp TTTTSCTTCEEEEE
T ss_pred HHccCCCCCEEEEE
Confidence 67888999999985
No 18
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=31.81 E-value=59 Score=25.17 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=23.0
Q ss_pred HHHhhcCCCCCCEEEEEEecCCCceEEEEEe
Q 017035 277 RFVKEKNLKAGDIVSFHRSTGGDRQLYIDWK 307 (378)
Q Consensus 277 ~FVk~k~Lk~GD~I~F~r~~~~~~~l~i~~r 307 (378)
..++.-+|+.||+|.+.|.....+. ++.+|
T Consensus 44 Pvar~~G~k~GdVvkI~R~S~taG~-~v~YR 73 (77)
T 1eik_A 44 PVAKAIGAKRGDIVKIIRKSPTAEE-FVTYR 73 (77)
T ss_dssp HHHHGGGCCTTCEEEEEEEETTTEE-EEEEE
T ss_pred HhhHHhCCCCCCEEEEEECCCCCCC-cEEEE
Confidence 5889999999999999998544333 45555
No 19
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=27.97 E-value=81 Score=24.69 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=22.6
Q ss_pred HHHhhcCCCCCCEEEEEEecCCCceEEEEEee
Q 017035 277 RFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKA 308 (378)
Q Consensus 277 ~FVk~k~Lk~GD~I~F~r~~~~~~~l~i~~r~ 308 (378)
..++..+|+.||+|.+.|.....+. ++-+|.
T Consensus 50 Pva~~~g~k~GdVvkI~R~S~tag~-~~~YR~ 80 (84)
T 4ayb_H 50 PVARSINAKPGDIIRIIRKSQLYGE-VVSYRY 80 (84)
T ss_dssp HHHHHHTCCTTCEEEEEEEETTTEE-EEEEEE
T ss_pred HhHHhhCCCCCCEEEEEEcCCCCCc-cEEEEE
Confidence 4788889999999999998543333 455554
No 20
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=27.96 E-value=1.7e+02 Score=22.56 Aligned_cols=42 Identities=17% Similarity=0.349 Sum_probs=28.1
Q ss_pred eEECCCC--eEEEEEEeCCe--EEEecCCC--CHHHHHHHHHHHHHhh
Q 017035 74 VVPQPNG--RWGAQIYEKHQ--RVWLGTFN--EEEEAARAYDIAAQRF 115 (378)
Q Consensus 74 V~~~~~g--rW~A~I~~~gk--r~~LGtf~--t~EeAArAYD~Aa~~~ 115 (378)
++..++| .|.-+.+.+|+ ++-||.|+ |.++|-..-+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4445543 58888777665 67899997 4777776666655444
No 21
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=26.62 E-value=8.7 Score=32.94 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCCceEEecCHHHH----------HhhcCCCCCCEEEEE
Q 017035 265 SSQSYVLTKGWSRF----------VKEKNLKAGDIVSFH 293 (378)
Q Consensus 265 ~s~~yvLt~GW~~F----------Vk~k~Lk~GD~I~F~ 293 (378)
.-+-||..+||+-| ..-+.|++||+|+-.
T Consensus 87 ehPFFV~gqGWsSc~P~~T~~~ygL~C~~L~vGDVClsl 125 (133)
T 1oa8_A 87 EYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISL 125 (133)
T ss_dssp TCCEEETTTEEEESCHHHHHHHHCCCCEECCTTCEEEEE
T ss_pred CCCcEEcCCcccccCHhHhhHhhCCcceecccCCEEEec
Confidence 35778889999665 355789999999874
No 22
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=26.19 E-value=63 Score=25.10 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=21.8
Q ss_pred HHHhhcCCCCCCEEEEEEecCCCceEEEEEe
Q 017035 277 RFVKEKNLKAGDIVSFHRSTGGDRQLYIDWK 307 (378)
Q Consensus 277 ~FVk~k~Lk~GD~I~F~r~~~~~~~l~i~~r 307 (378)
..++.-+|+.||+|.+.|.....+. ++.+|
T Consensus 42 Pvar~~G~k~GdVvkI~R~S~taG~-~v~YR 71 (78)
T 1hmj_A 42 PVIQEIGAKEGDVVRVIRKSPTAGV-SIAYR 71 (78)
T ss_pred HhhHHhCCCCCCEEEEEECCCCCCC-cEEEE
Confidence 5889999999999999998533332 34444
No 23
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=26.10 E-value=76 Score=24.79 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=23.9
Q ss_pred eEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHhhcCCCCCCEEEE
Q 017035 244 LLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSF 292 (378)
Q Consensus 244 v~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk~k~Lk~GD~I~F 292 (378)
..+.+.|..| ..+++.| .+.+.. .|++||+|.|
T Consensus 40 ~~~~l~DeTG---~I~~tlW------------~~~~~~-~i~~Gdvv~i 72 (97)
T 3e0e_A 40 KSLFLKDDTG---SIRGTLW------------NELADF-EVKKGDIAEV 72 (97)
T ss_dssp EEEEEEETTE---EEEEEEE------------GGGGGC-CCCTTCEEEE
T ss_pred EEEEEECCCC---cEEEEEE------------CCcccc-ccCCCCEEEE
Confidence 4567888887 5666655 444444 8999999999
No 24
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.61 E-value=38 Score=29.73 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=17.8
Q ss_pred cCCCCCCEEEEEEecCCCceEEE
Q 017035 282 KNLKAGDIVSFHRSTGGDRQLYI 304 (378)
Q Consensus 282 k~Lk~GD~I~F~r~~~~~~~l~i 304 (378)
..|++||+|.|+++.+++..++|
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~i 138 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWV 138 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEE
T ss_pred cccCCCCEEEEEEcCCcEEEEEE
Confidence 45689999999998766665554
No 25
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=24.16 E-value=1.8e+02 Score=24.40 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=31.6
Q ss_pred eEEEEEeCCCCeEEEEEEE--e-------cCCCceEE--ecCHHHHHhhcCCCCCCEEEE
Q 017035 244 LLLNFEDVTGKVWRFRYSY--W-------NSSQSYVL--TKGWSRFVKEKNLKAGDIVSF 292 (378)
Q Consensus 244 v~l~v~D~~Gk~W~Fr~s~--~-------~~s~~yvL--t~GW~~FVk~k~Lk~GD~I~F 292 (378)
+.+.+.|.+|++-.....- | ...-.||| ..|| +.+.++++||.|.+
T Consensus 70 LDiiFld~~g~Vv~i~~~~~P~~~~~~~~~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 126 (136)
T 3pjy_A 70 LDMLFIASDGTIRTIHENAVPHSEAIIDSREPVAYVLELNAGT---VKRLGVSPGDRLEG 126 (136)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEECCSCEEEEEEEETTH---HHHHTCCTTCEEEE
T ss_pred eEEEEECCCCEEEEEEccCCCCcCCCCCCCCceeEEEEeCcCh---HHhcCCCCCCEEEE
Confidence 7788888888776663221 1 12245888 5565 48899999999986
No 26
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=24.07 E-value=91 Score=24.87 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=24.5
Q ss_pred eEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHhhcCCCCCCEEEEEEe
Q 017035 244 LLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRS 295 (378)
Q Consensus 244 v~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk~k~Lk~GD~I~F~r~ 295 (378)
..+.+.|..| .++++.|+ +.+.. .|++||+|.| ..
T Consensus 43 ~~~~l~D~TG---~IrvtlW~------------~~a~~-~l~~Gdvv~i-~g 77 (105)
T 3dm3_A 43 KSFIVRDETG---SIRVTLWD------------NLTDI-DVGRGDYVRV-RG 77 (105)
T ss_dssp EEEEEEETTE---EEEEEEEG------------GGGGS-CCCTTCEEEE-EE
T ss_pred EEEEEECCCC---cEEEEEEC------------ccccc-ccCCCCEEEE-EE
Confidence 4577888887 47777663 32322 8999999999 44
No 27
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=21.84 E-value=1.1e+02 Score=25.27 Aligned_cols=37 Identities=19% Similarity=0.090 Sum_probs=30.5
Q ss_pred eEEEEEEeCCeEEEecCCCCHHHHHHHHHHHHHhhcC
Q 017035 81 RWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRG 117 (378)
Q Consensus 81 rW~A~I~~~gkr~~LGtf~t~EeAArAYD~Aa~~~~G 117 (378)
.|+|.|.....-+-++...+++.|..|...|+.+|=+
T Consensus 79 ~wva~Vk~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECCCCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 4999998777767777778899999999999988744
No 28
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=21.53 E-value=1.5e+02 Score=23.33 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=28.2
Q ss_pred eEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHhhcCCCCCCEEEEEEe
Q 017035 244 LLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRS 295 (378)
Q Consensus 244 v~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk~k~Lk~GD~I~F~r~ 295 (378)
..+.+.|..| ..++++|+... | ....|++||+|.|.-.
T Consensus 45 ~~~~l~D~TG---~I~~t~w~~~~-------~----~~~~l~~G~vv~i~g~ 82 (115)
T 2k50_A 45 ANVIIADDTG---ELRAVFWTENI-------K----LLKKFREGDVIRIKDV 82 (115)
T ss_dssp EEEEEEETTE---EEEEEEETTGG-------G----GGGTCCTTSEEEEEEE
T ss_pred EEEEEEeCCC---eEEEEEeCchh-------h----hhhcCCCCCEEEEEee
Confidence 5678999998 78889996431 2 1257999999999644
No 29
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=21.10 E-value=1e+02 Score=23.60 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=27.3
Q ss_pred EEEEeCCCCeEEEEEEEecCCCceEEec-CHHHHHhhcCCCCCCEEEEE
Q 017035 246 LNFEDVTGKVWRFRYSYWNSSQSYVLTK-GWSRFVKEKNLKAGDIVSFH 293 (378)
Q Consensus 246 l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~-GW~~FVk~k~Lk~GD~I~F~ 293 (378)
+.+....|..|-|.+.........++.. -..--....+|++||+|+=.
T Consensus 5 v~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~i 53 (106)
T 3ngh_A 5 SKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRI 53 (106)
T ss_dssp EEEECCTTCCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEEE
T ss_pred EEEEeCCCCeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEE
Confidence 4444455667777666543322222322 12235567789999998764
No 30
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=20.39 E-value=57 Score=24.02 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.6
Q ss_pred eEEEecCCCCHHHHHHHHHHHHH
Q 017035 91 QRVWLGTFNEEEEAARAYDIAAQ 113 (378)
Q Consensus 91 kr~~LGtf~t~EeAArAYD~Aa~ 113 (378)
-||++|.|.+.++|..+-+....
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 48899999999999888765443
No 31
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=20.23 E-value=91 Score=21.67 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=17.3
Q ss_pred HHHhhcCCCCCCEEEEEEec
Q 017035 277 RFVKEKNLKAGDIVSFHRST 296 (378)
Q Consensus 277 ~FVk~k~Lk~GD~I~F~r~~ 296 (378)
++.+.-+|++||.|.|.-+.
T Consensus 19 ~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 19 KVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHcCcCCCCEEEEEEEC
Confidence 57788999999999998764
Done!