Query 017035
Match_columns 378
No_of_seqs 414 out of 1583
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 07:52:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017035.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017035hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wida_ b.142.1.2 (A:) DNA-bin 100.0 1.1E-28 8.2E-33 206.7 15.2 111 202-312 2-113 (117)
2 d1gcca_ d.10.1.2 (A:) GCC-box 99.9 6.7E-23 4.9E-27 154.9 5.7 57 70-126 2-61 (63)
3 d1na6a1 b.142.1.1 (A:4-178) Re 99.7 1.3E-18 9.2E-23 153.6 6.3 111 201-311 12-138 (175)
4 d1yela1 b.142.1.2 (A:1-102) At 99.6 8E-15 5.8E-19 119.5 10.2 85 202-296 4-88 (102)
5 g1uhe.1 b.52.2.1 (B:,A:) Pyruv 54.1 31 0.0022 27.1 8.5 73 206-293 10-86 (121)
6 d1ppya_ b.52.2.1 (A:) Pyruvoyl 49.8 53 0.0039 25.5 9.3 74 206-293 10-88 (118)
7 d1hmja_ d.78.1.1 (A:) RNA poly 40.7 14 0.001 26.0 4.0 20 277-296 33-52 (68)
8 d1dgsa2 b.40.4.6 (A:315-400) N 40.6 8.4 0.00061 28.6 2.8 21 276-296 45-65 (86)
9 d1eika_ d.78.1.1 (A:) RNA poly 30.7 32 0.0023 24.6 4.7 31 277-308 44-74 (77)
10 d1zq1a1 b.38.3.1 (A:2-75) Glut 23.1 37 0.0027 24.3 3.7 53 276-334 3-60 (74)
11 d1dzfa2 d.78.1.1 (A:144-215) E 21.0 24 0.0017 25.0 2.2 20 277-296 40-59 (72)
No 1
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.96 E-value=1.1e-28 Score=206.69 Aligned_cols=111 Identities=80% Similarity=1.337 Sum_probs=103.5
Q ss_pred cccceeeeccccCCCCCCCceeechhhHhhcCCCCCCC-CCCceEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHh
Q 017035 202 ARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGS-TSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVK 280 (378)
Q Consensus 202 ~~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~~~~~-~~~gv~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk 280 (378)
...+||+|+||+|||++.+||+||++++++|||.++.. ..+++.|.+.|.+|++|+|+|++|+++++|+|+.||..||+
T Consensus 2 ~~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~ 81 (117)
T d1wida_ 2 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVK 81 (117)
T ss_dssp CCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHH
T ss_pred CCceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHH
Confidence 46789999999999998899999999999999999854 45679999999999999999999998999999999999999
Q ss_pred hcCCCCCCEEEEEEecCCCceEEEEEeeecCC
Q 017035 281 EKNLKAGDIVSFHRSTGGDRQLYIDWKARTGP 312 (378)
Q Consensus 281 ~k~Lk~GD~I~F~r~~~~~~~l~i~~r~~~~~ 312 (378)
+|+|++||+|+|+|+..++.+++|.+|++++.
T Consensus 82 ~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~ 113 (117)
T d1wida_ 82 EKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 113 (117)
T ss_dssp HTTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred HcCCCCCCEEEEEEEeCCCCEEEEEEEECCCC
Confidence 99999999999999988889999999999864
No 2
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.86 E-value=6.7e-23 Score=154.93 Aligned_cols=57 Identities=49% Similarity=0.827 Sum_probs=54.2
Q ss_pred ceEEeEECCCCeEEEEEEe---CCeEEEecCCCCHHHHHHHHHHHHHhhcCCCCCCCCCc
Q 017035 70 KYKGVVPQPNGRWGAQIYE---KHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQ 126 (378)
Q Consensus 70 ~yrGV~~~~~grW~A~I~~---~gkr~~LGtf~t~EeAArAYD~Aa~~~~G~~a~~NFp~ 126 (378)
.||||+++++|||+|+|++ +++++|||+|+|+||||+|||.|+++++|.++.+|||+
T Consensus 2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~ 61 (63)
T d1gcca_ 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCT
T ss_pred CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence 4999999899999999996 66899999999999999999999999999999999997
No 3
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.73 E-value=1.3e-18 Score=153.61 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=93.9
Q ss_pred ccccceeeeccccCCCCCCCc----eeechhhHhhcCCCCCCC--CCCc--eEEEEEeCCCCeEEEEEEEecCC------
Q 017035 201 KARDQLFEKAVTPSDVGKLNR----LVIPKQHAEKHFPLQSGS--TSKG--LLLNFEDVTGKVWRFRYSYWNSS------ 266 (378)
Q Consensus 201 ~~~~~lF~K~LT~SDV~~~~r----LvIPk~~ae~~lP~~~~~--~~~g--v~l~v~D~~Gk~W~Fr~s~~~~s------ 266 (378)
.+...+|.|.||+||++++++ |+|||++++++||.++.. ..+. +.+.+.|.+|++|+|||+|||+.
T Consensus 12 ~~~~~~F~K~LtasD~g~tg~HQaG~~IPK~~ae~~FP~l~~~~e~nP~~~l~~~i~d~~g~~w~fR~iYyn~~~~ggTR 91 (175)
T d1na6a1 12 CENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTR 91 (175)
T ss_dssp HSSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCC
T ss_pred CCceEEEEEEcccccccccCCccceeeecHHHHHHhCCCCCcccccCCCceEEEEEecCCCCeeEEEEEEECCccCCCcc
Confidence 466899999999999998887 999999999999998854 2233 44567799999999999999874
Q ss_pred CceEEecCHHHHHhhcCCCCCCEEEEEEe--cCCCceEEEEEeeecC
Q 017035 267 QSYVLTKGWSRFVKEKNLKAGDIVSFHRS--TGGDRQLYIDWKARTG 311 (378)
Q Consensus 267 ~~yvLt~GW~~FVk~k~Lk~GD~I~F~r~--~~~~~~l~i~~r~~~~ 311 (378)
..|+||++|..|+..+.+.+||.++|.+. .......+|++.+...
T Consensus 92 neyRiT~~g~~~~~~~~~n~G~l~i~af~~~~~~~~~~~~~vwvc~~ 138 (175)
T d1na6a1 92 NEKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWVCAS 138 (175)
T ss_dssp CEEEEECCCTTSGGGCGGGTTCEEEEEEECCTTSCCCCEEEEEECCS
T ss_pred ccEEEEeccccccccCccccccEEEEEeecCCCCCceeEEEEEEecC
Confidence 88999999999999999999999999884 5567778899888773
No 4
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.55 E-value=8e-15 Score=119.55 Aligned_cols=85 Identities=26% Similarity=0.441 Sum_probs=71.8
Q ss_pred cccceeeeccccCCCCCCCceeechhhHhhcCCCCCCCCCCceEEEEEeCCCCeEEEEEEEecCCCceEEecCHHHHHhh
Q 017035 202 ARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKE 281 (378)
Q Consensus 202 ~~~~lF~K~LT~SDV~~~~rLvIPk~~ae~~lP~~~~~~~~gv~l~v~D~~Gk~W~Fr~s~~~~s~~yvLt~GW~~FVk~ 281 (378)
+..+-|.|+|.+++... +|.||+.++..+.+... ..+.++|.+|+.|.+++... +...+|+.||.+||++
T Consensus 4 ~~~~~Ffkv~~~~~~~~--~L~IP~~F~~~~~~~~~------~~i~L~d~~G~~W~v~~~~~--~~~~~~~~GW~~Fv~~ 73 (102)
T d1yela1 4 TGEVQFMKPFISEKSSK--SLEIPLGFNEYFPAPFP------ITVDLLDYSGRSWTVRMKKR--GEKVFLTVGWENFVKD 73 (102)
T ss_dssp CCCEEEEEECCHHHHTT--CEECCHHHHTTCCCCCC------SEEEEEETTSCEEEEEEEEE--TTEEEECTTHHHHHHH
T ss_pred CCCCeEEEEEcCcccCC--CEECCHHHHHhCCCCCC------CEEEEEcCCCCEEEEEEEEe--CCeEEEccCHHHHHHH
Confidence 34566999999999875 89999999987766543 35788899999999998754 5678899999999999
Q ss_pred cCCCCCCEEEEEEec
Q 017035 282 KNLKAGDIVSFHRST 296 (378)
Q Consensus 282 k~Lk~GD~I~F~r~~ 296 (378)
|+|++||.|+|..+.
T Consensus 74 n~L~~GD~~vF~~~~ 88 (102)
T d1yela1 74 NNLEDGKYLQFIYDR 88 (102)
T ss_dssp HTCCTTCEEEEEECS
T ss_pred cCCCcCCEEEEEEcC
Confidence 999999999998764
No 5
>g1uhe.1 b.52.2.1 (B:,A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Helicobacter pylori [TaxId: 210]}
Probab=54.06 E-value=31 Score=27.06 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=51.9
Q ss_pred eeeeccccCCCCCCCceeechhhHhhc--CCCCCCCCCCceEEEEEeC-CCCeEEEEEEEe-cCCCceEEecCHHHHHhh
Q 017035 206 LFEKAVTPSDVGKLNRLVIPKQHAEKH--FPLQSGSTSKGLLLNFEDV-TGKVWRFRYSYW-NSSQSYVLTKGWSRFVKE 281 (378)
Q Consensus 206 lF~K~LT~SDV~~~~rLvIPk~~ae~~--lP~~~~~~~~gv~l~v~D~-~Gk~W~Fr~s~~-~~s~~yvLt~GW~~FVk~ 281 (378)
|-.-++|..|+..-| +.|..+.++.. +|.- .+.+++. +|..|.- |.+. ..+..-.|.+. -+
T Consensus 10 iHra~VT~a~l~YeG-itID~~Ll~aa~i~p~E--------~V~V~N~~NG~Rf~T-YvI~g~~sg~I~lNGA-----AA 74 (121)
T g1uhe.1 10 IHRATITDANLNYIG-ITIDEDLAKLAKLREGM--------KVEIVDVNNGERFST-YVILGKKRGEICVNGA-----AA 74 (121)
T ss_dssp EEEEECCEEETTCCC-CEEEHHHHHHTTCCTTC--------EEEEEETTTCCEEEE-ECEEECSTTCEEEEGG-----GG
T ss_pred hcCcEEeccccceeE-EEECHHHHHHcCCCCCC--------EEEEEECCCCeEEEe-EEEecCCCCEEEecCh-----hh
Confidence 445678999999888 99999998774 4433 2678887 6887653 3333 22455677663 77
Q ss_pred cCCCCCCEEEEE
Q 017035 282 KNLKAGDIVSFH 293 (378)
Q Consensus 282 k~Lk~GD~I~F~ 293 (378)
+.-++||.|++.
T Consensus 75 ~~~~~GD~vII~ 86 (121)
T g1uhe.1 75 RKVAIGDVVIIL 86 (121)
T ss_dssp GGCCTTCEEEEE
T ss_pred eecCCCCEEEEE
Confidence 888999999884
No 6
>d1ppya_ b.52.2.1 (A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Escherichia coli [TaxId: 562]}
Probab=49.78 E-value=53 Score=25.48 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=53.5
Q ss_pred eeeeccccCCCCCCCceeechhhHhhc--CCCCCCCCCCceEEEEEeC-CCCeEEEEEEEec--CCCceEEecCHHHHHh
Q 017035 206 LFEKAVTPSDVGKLNRLVIPKQHAEKH--FPLQSGSTSKGLLLNFEDV-TGKVWRFRYSYWN--SSQSYVLTKGWSRFVK 280 (378)
Q Consensus 206 lF~K~LT~SDV~~~~rLvIPk~~ae~~--lP~~~~~~~~gv~l~v~D~-~Gk~W~Fr~s~~~--~s~~yvLt~GW~~FVk 280 (378)
|-.-++|..|+..-|-+.|..+..++. +|.- .+.+++. +|..|.- |.+.. .|+.-.|.+. -
T Consensus 10 iHra~VT~a~l~YeGSitID~~Lm~aagi~~~E--------kV~V~Nv~NG~Rf~T-YvI~g~~gSg~I~lNGa-----A 75 (118)
T d1ppya_ 10 LHRVKVTHADLHYEGSCAIDQDFLDAAGILENE--------AIDIWNVTNGKRFST-YAIAAERGSRIISVNGA-----A 75 (118)
T ss_dssp EEEEECCCCSSCCTTSEEEEHHHHHHHTCCTTC--------EEEEEETTTCCEEEE-EEEEECTTCCCEECTTT-----T
T ss_pred ccCcEEeccccceeEEEEECHHHHHHcCCCCCC--------EEEEEECCCCcEEEE-EEEEcCCCCCEEEecCh-----h
Confidence 445578999999999999999998774 4432 3778887 6887763 44443 4455666664 6
Q ss_pred hcCCCCCCEEEEE
Q 017035 281 EKNLKAGDIVSFH 293 (378)
Q Consensus 281 ~k~Lk~GD~I~F~ 293 (378)
++..++||.|++.
T Consensus 76 Ar~~~~GD~vII~ 88 (118)
T d1ppya_ 76 AHCASVGDIVIIA 88 (118)
T ss_dssp GGGCCTTCEEEEE
T ss_pred heecCCCCEEEEE
Confidence 7888999999884
No 7
>d1hmja_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=40.73 E-value=14 Score=26.01 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.3
Q ss_pred HHHhhcCCCCCCEEEEEEec
Q 017035 277 RFVKEKNLKAGDIVSFHRST 296 (378)
Q Consensus 277 ~FVk~k~Lk~GD~I~F~r~~ 296 (378)
..++..+|+.||+|-+.|..
T Consensus 33 Pva~~~g~k~GdvvkI~R~S 52 (68)
T d1hmja_ 33 PVIQEIGAKEGDVVRVIRKS 52 (68)
T ss_pred HHHHHhCCCCCcEEEEEEcC
Confidence 36777899999999999984
No 8
>d1dgsa2 b.40.4.6 (A:315-400) NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}
Probab=40.59 E-value=8.4 Score=28.65 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=19.4
Q ss_pred HHHHhhcCCCCCCEEEEEEec
Q 017035 276 SRFVKEKNLKAGDIVSFHRST 296 (378)
Q Consensus 276 ~~FVk~k~Lk~GD~I~F~r~~ 296 (378)
.+|+++++|..||.|.++|..
T Consensus 45 ~~~i~~~~i~~Gd~V~i~raG 65 (86)
T d1dgsa2 45 ESYIEELDIRIGDWVLVHKAG 65 (86)
T ss_dssp HHHHHHTTCBSSCEEEEEEET
T ss_pred HHHHhhcCCCcCceEEEEECC
Confidence 679999999999999999973
No 9
>d1eika_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.67 E-value=32 Score=24.62 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=22.3
Q ss_pred HHHhhcCCCCCCEEEEEEecCCCceEEEEEee
Q 017035 277 RFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKA 308 (378)
Q Consensus 277 ~FVk~k~Lk~GD~I~F~r~~~~~~~l~i~~r~ 308 (378)
..++-.+|+.||+|.+.|.....+ -++-+|.
T Consensus 44 Pva~~~g~k~GdvvkI~R~S~tag-~~~~YR~ 74 (77)
T d1eika_ 44 PVAKAIGAKRGDIVKIIRKSPTAE-EFVTYRL 74 (77)
T ss_dssp HHHHGGGCCTTCEEEEEEEETTTE-EEEEEEE
T ss_pred HhhhhhCCcCCcEEEEEEcCCCCC-CceEEEE
Confidence 477888999999999999854333 3455553
No 10
>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Probab=23.14 E-value=37 Score=24.28 Aligned_cols=53 Identities=28% Similarity=0.488 Sum_probs=34.1
Q ss_pred HHHHhhcCCCCCCEEEEEEecCCCceEEEEEeeecCCCCCC---CCC-ceeeee-eceeeeecc
Q 017035 276 SRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPIENP---VEP-VQMMRL-FGVNIFKIP 334 (378)
Q Consensus 276 ~~FVk~k~Lk~GD~I~F~r~~~~~~~l~i~~r~~~~~~~~~---~~~-~k~vrl-fG~~~~~~p 334 (378)
.+|.+.+++.+||.|.+....+.+...|-++ .+|+ .++ .-.++| .|-+|++..
T Consensus 3 ~~fl~~~~~~~GD~Vri~~~~~~~~~~~eGi------lmP~~e~s~~~~ivlKL~nGYNiGi~~ 60 (74)
T d1zq1a1 3 DEFLKERNINVGDFVRITKEEDGEEVTYEGY------IMPPYELSAGDTLVLKLENGYNIGIAL 60 (74)
T ss_dssp HHHHHHTTCCTTCEEEEEEESSSSEEECCEE------ECCCCTTCCCSEEEEEETTSCEEEEEG
T ss_pred HHHHHHcCCCCCCEEEEEEecCCCceEEEEE------EcCCcccCCCCEEEEEecCceeeccch
Confidence 4799999999999999988765433332222 2333 222 335677 777877543
No 11
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.03 E-value=24 Score=25.04 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=17.6
Q ss_pred HHHhhcCCCCCCEEEEEEec
Q 017035 277 RFVKEKNLKAGDIVSFHRST 296 (378)
Q Consensus 277 ~FVk~k~Lk~GD~I~F~r~~ 296 (378)
..++-.+|+.||+|-+.|..
T Consensus 40 Pva~~~g~~~GdvikI~R~s 59 (72)
T d1dzfa2 40 PVALYLGLKRGEVVKIIRKS 59 (72)
T ss_dssp HHHHHHTCCTTCEEEEECTT
T ss_pred HhhhhcCCCCCCEEEEEEcC
Confidence 37888899999999999974
Done!