BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017036
(378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H4I3|TRABD_HUMAN TraB domain-containing protein OS=Homo sapiens GN=TRABD PE=1 SV=1
Length = 376
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 132/276 (47%), Gaps = 24/276 (8%)
Query: 34 PPQDFDFRTEILSDSQATIAKAC---PELLNLADDGTLVLIQK----RQFGPVPAWRSEF 86
PP + + + S++ + + P+ L+ D L+L K RQ +P ++
Sbjct: 8 PPHEANVEPVVPSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNLPRTVTQL 67
Query: 87 VEPE--NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQL 144
V + ++++GT H S DS DV + +R ++PD VVVELC+ R ++
Sbjct: 68 VAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDE-------- 119
Query: 145 RSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVA 204
S + + + +++ G + +++LL S+ I+ + G EFR A K A
Sbjct: 120 -STLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEA 178
Query: 205 EEVG-AQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSD-MSLDNLKEPSPD 262
+V + LGDRPI +T +RA +L + +K+ L G+ SD +S D+++
Sbjct: 179 SKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAW----GLCFLSDPISKDDVERCKQK 234
Query: 263 DSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRS 298
D Q+ ++ P L ++ ERD YL + L+++
Sbjct: 235 DLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQA 270
>sp|Q99JY4|TRABD_MOUSE TraB domain-containing protein OS=Mus musculus GN=Trabd PE=2 SV=1
Length = 376
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 15/210 (7%)
Query: 91 NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFS 150
++++GT H S DS DV + +R ++PD VVVELC+ R ++ +++ L
Sbjct: 73 RVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKM-----DERTLLREAKE 127
Query: 151 LSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVG-A 209
+S AV ++ + G +++LL S+ I+ + G EFR A K A +V
Sbjct: 128 VSLEKLQQAVRQNGLMSG----LMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFC 183
Query: 210 QIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSD-MSLDNLKEPSPDDSTFQL 268
+ LGDRPI +T +RA +L + +K+ L G+ SD +S D+++ D Q+
Sbjct: 184 KFHLGDRPIPVTFKRAIAALSFWQKVKLAW----GLCFLSDPISKDDVERCKQKDLLEQM 239
Query: 269 YKKLSFSCPSLLLPLIHERDKYLAWSLKRS 298
++ P L ++ ERD YL + L+++
Sbjct: 240 MAEMIGEFPDLHRTIVSERDVYLTYMLRQA 269
>sp|Q58DF3|TRABD_BOVIN TraB domain-containing protein OS=Bos taurus GN=TRABD PE=2 SV=1
Length = 377
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 17/233 (7%)
Query: 70 LIQKRQFGPVPAWRSEFVEPE--NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRS 127
L ++R+ +P +E V + ++++GT H S DS DV + +R ++PD VVVELC+
Sbjct: 51 LKRRRERPNLPHTVTELVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQY 110
Query: 128 RAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISS 187
R ++ +++ L +S + ++I G + +++LL S+ I+
Sbjct: 111 RVSMLKM-----DERTLLREAKEIS----LEKLQQAIRQNGVASGLMQMLLLKVSAHITE 161
Query: 188 DVNRPFGDEFRAARKVAEEVG-AQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGIT 246
+ G EFR A K A V + LGDRPI +T +RA +L +K+ L G+
Sbjct: 162 QLGVAPGGEFREAFKEASRVPFCKFHLGDRPIPVTFKRAIAALSLWQKVKLAW----GLC 217
Query: 247 SPSD-MSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRS 298
SD +S D+++ D Q+ ++ P L ++ ERD YL + L+++
Sbjct: 218 FLSDPISKDDVERCKQKDLLEQMMAEMVGEFPDLHRTIVSERDVYLTYMLRQA 270
>sp|Q58760|Y1365_METJA Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1365 PE=4 SV=1
Length = 397
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 32/238 (13%)
Query: 91 NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFS 150
+I+LIGT H+S+DS +VE+++ ++ P+ + VEL R + T N+++
Sbjct: 18 DIYLIGTAHVSKDSIEEVEKIISSVSPEGIAVELDDRRFFSLIT-----NEEKKVDLKKV 72
Query: 151 LSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQ 210
L F + L+LA KI G E + A ++A + G
Sbjct: 73 LKEGNFL-------------KFFIYLILANSQKKIGESFGIKPGSEMKKAIEIASKYGLP 119
Query: 211 IVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSL----DNLKEPSPDDSTF 266
I L DR I+ITL R + + + EK+ + ++ ++ D +K P +
Sbjct: 120 IYLIDRDIDITLSRLMDRMTFKEKMKIFWELLNSDEEDLELDDDLLNDMVKNP---EKFI 176
Query: 267 QLYKKLSFSCPSLLLPLIHERDKYLAWSL-KRSKAVNNSKKVVGVIGKGHMNGVIYAL 323
+L K++S P++ L+ ERD+++A L + SK N +V V+G GH+ G++ L
Sbjct: 177 KLLKEIS---PTIYEVLVDERDRFMAKRLFELSK---NKNSLVAVVGAGHVEGIVRYL 228
>sp|Q73IR2|TPIS_WOLPM Triosephosphate isomerase OS=Wolbachia pipientis wMel GN=tpiA PE=3
SV=1
Length = 242
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 64 DDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVE 123
++ T +I+ + +P V E IW IGT H+ + A + +V+ IK
Sbjct: 129 NEKTKEVIEYQCKNRLPTHGEYTVAYEPIWAIGTGHVPNNDA--IAKVIEVIK------- 179
Query: 124 LCRSRAGIMYTSNGGENDQQLRSNMFSLSGTG--FFGAVGRSIDLGGQTALALRLLLALF 181
LC S+ I+Y GG + N+ S+S G+ D + + +L
Sbjct: 180 LCTSKKHIIY---GGSVSSENIENLLSISNLSGVLIGSASLDFDHFYKIIQQVEKKFSLI 236
Query: 182 SSKISS 187
+SKIS+
Sbjct: 237 NSKISN 242
>sp|Q1J0R0|PSRP_DEIGD Putative phosphoenolpyruvate synthase regulatory protein
OS=Deinococcus geothermalis (strain DSM 11300)
GN=Dgeo_0622 PE=3 SV=1
Length = 270
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 175 RLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEIT 221
R LLA F S+ + RPF AR VA EV A G+RP+ T
Sbjct: 24 RALLAHFPSQSLKYLQRPFVASVEVARGVAREVAALAERGERPLIFT 70
>sp|A0JYN2|HEM1_ARTS2 Glutamyl-tRNA reductase OS=Arthrobacter sp. (strain FB24) GN=hemA
PE=3 SV=2
Length = 446
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 134 TSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPF 193
T GGE Q L F++S +G AV ++ GQ AL + A SS + R F
Sbjct: 91 TRTGGEVSQHL----FAVS-SGLDSAVVGEREIAGQVRRAL--INAQHEGTASSGLVRLF 143
Query: 194 GDEFRAARKVAEEVGAQIVLGDRPIEI 220
+AA K A++VGAQ LG R + I
Sbjct: 144 ----QAASKTAKDVGAQTALGSRGLSI 166
>sp|Q7SA06|IML2_NEUCR Mitochondrial outer membrane protein iml-2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=iml-2 PE=3 SV=1
Length = 811
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 22/134 (16%)
Query: 214 GDRPIEITLERAWNSLKWNE------KLNLL--INVIRGITS--PSDMSLDNLKEPSPDD 263
GDR + ++ W S K++ L LL N+ GI PS++ + L +PS
Sbjct: 392 GDR--DRGVQMLWQSTKYDNVNGAMAGLVLLQYYNLFFGIADILPSELDIQQLSKPSTGG 449
Query: 264 STFQLYKKLSFSCPSLLLPLIHERDKYLAWSLKRSKAVNNSKKVVGVIGKGHMNGVIYAL 323
+ F+ C +LL + H W L+ ++ + N++++ + A+
Sbjct: 450 AKFEAVGYPHNECTALLAQMRHRYPDSRLWRLEEARVLANARRIEEAL----------AM 499
Query: 324 VSDQGNLRFRDLAG 337
++D + + R +A
Sbjct: 500 LADNNDSKMRQIAA 513
>sp|Q8IWT3|CUL9_HUMAN Cullin-9 OS=Homo sapiens GN=CUL9 PE=1 SV=2
Length = 2517
Score = 32.0 bits (71), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 4/109 (3%)
Query: 236 NLLINVIRGITSPSDMSLDNLKEPSPDDSTFQLYKKLSFSCPSLLLPLIHERDKYLAWSL 295
NL+ ++R + ++S + P P S FQ Y S PSLLLP I + W
Sbjct: 308 NLISELVRSMGWARNLSEQGMSPPRPTRSIFQPY----ISGPSLLLPTIVTTPRRQGWVF 363
Query: 296 KRSKAVNNSKKVVGVIGKGHMNGVIYALVSDQGNLRFRDLAGKRPSGDG 344
++ ++ + + G+ ++ D + D R S +G
Sbjct: 364 RQRSEFSSRSGYGEYVQQTLQPGMRVRMLDDYEEISAGDEGEFRQSNNG 412
>sp|O19928|PSBB_CYACA Photosystem II CP47 chlorophyll apoprotein OS=Cyanidium caldarium
GN=psbB PE=3 SV=1
Length = 509
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 24/102 (23%)
Query: 80 PAWRSEFVEPENIWLIGTTHLSQDSAADV-----------ERVVRAIKPDNVVVELCRSR 128
PAW E P N I + H++ + + +R+ RA++ N+ L S
Sbjct: 183 PAWGPEGFNPFNPGGIASHHIAAGTVGILAGVFHLNVRPPQRLYRALRMGNIETVLSSSI 242
Query: 129 AGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQT 170
A + + S F +SGT ++GA I+L G T
Sbjct: 243 AAVFFAS-------------FVVSGTMWYGAASTPIELFGPT 271
>sp|Q61315|APC_MOUSE Adenomatous polyposis coli protein OS=Mus musculus GN=Apc PE=1 SV=1
Length = 2845
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 1 MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATI 52
M+ Q+A+ AN N + TK KP +KP PQ+ ++RT + ++ + +
Sbjct: 1745 MDQVQQASSTSSGANKNQVDTKKKKPTS-PVKPMPQNTEYRTRVRKNTDSKV 1795
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,194,471
Number of Sequences: 539616
Number of extensions: 6018031
Number of successful extensions: 14175
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 14159
Number of HSP's gapped (non-prelim): 12
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)