Query 017036
Match_columns 378
No_of_seqs 196 out of 516
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:53:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g5g_X Putative lipoprotein; c 93.6 0.73 2.5E-05 43.7 12.2 34 287-325 200-236 (268)
2 4ep4_A Crossover junction endo 55.7 13 0.00043 32.7 4.6 35 91-125 27-72 (166)
3 2xdq_A Light-independent proto 36.9 3.1E+02 0.011 26.8 12.8 32 88-121 195-226 (460)
4 2yqr_A KIAA0907 protein; struc 32.9 1.4E+02 0.0048 24.4 7.3 79 27-114 16-95 (119)
5 1hjr_A Holliday junction resol 30.6 30 0.001 29.9 2.9 32 95-126 30-69 (158)
6 3uqz_A DNA processing protein 28.8 89 0.003 29.7 6.1 55 54-116 79-133 (288)
7 2o0q_A Hypothetical protein CC 26.6 37 0.0013 27.9 2.6 35 95-131 31-68 (115)
8 4f1h_A Tyrosyl-DNA phosphodies 21.9 56 0.0019 27.2 3.1 19 105-123 23-41 (250)
9 2e5z_A SFRS8 protein, splicing 21.9 94 0.0032 24.5 4.1 41 21-65 8-48 (90)
10 1vhx_A Putative holliday junct 20.7 34 0.0012 29.1 1.3 35 92-126 27-65 (150)
No 1
>2g5g_X Putative lipoprotein; cofacial heme, tyrosine ligand, dimer, transport protein; HET: HEM; 1.90A {Campylobacter jejuni subsp} SCOP: c.150.1.1
Probab=93.59 E-value=0.73 Score=43.68 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHhhhhCCCCeEEEEECCCchh---hhHhhhhh
Q 017036 287 RDKYLAWSLKRSKAVNNSKKVVGVIGKGHMN---GVIYALVS 325 (378)
Q Consensus 287 RD~yma~~L~~~~~~~~~~~vVaVVGagHl~---GI~~~L~~ 325 (378)
||..||++|.+ .++++|+|.|.||+. ||-.+|..
T Consensus 200 rD~~MA~~i~~-----~~~~vv~iaG~gH~~~~~Gvp~~l~~ 236 (268)
T 2g5g_X 200 KDRRMADVLVH-----HVNKVLLLAGSYHTSKKIGIPLHIQD 236 (268)
T ss_dssp HHHHHHHHHHH-----CSSEEEEEEEHHHHCTTTSHHHHHHH
T ss_pred HHHHHHHHHHh-----CCCeEEEEeCcchhcCCCcHHHHHHH
Confidence 99999999975 357999999999998 88888865
No 2
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=55.72 E-value=13 Score=32.67 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=27.4
Q ss_pred eEEEE--eecCCChh---------hHHHHHHHHHHcCCCeEEEeec
Q 017036 91 NIWLI--GTTHLSQD---------SAADVERVVRAIKPDNVVVELC 125 (378)
Q Consensus 91 ~VyLV--GTaHvS~~---------Sa~~V~~vI~~vkPD~V~VELc 125 (378)
.+.+| |+.+.++. -.+.+.++|++.+||.|+||-.
T Consensus 27 ~~~~v~~G~I~t~~~~~~~~RL~~I~~~l~~~i~~~~Pd~vaiE~~ 72 (166)
T 4ep4_A 27 KARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQ 72 (166)
T ss_dssp CEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred eEEEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeeh
Confidence 45555 88887653 1688999999999999999954
No 3
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=36.85 E-value=3.1e+02 Score=26.83 Aligned_cols=32 Identities=6% Similarity=0.006 Sum_probs=24.8
Q ss_pred CCceEEEEeecCCChhhHHHHHHHHHHcCCCeEE
Q 017036 88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVV 121 (378)
Q Consensus 88 ~~~~VyLVGTaHvS~~Sa~~V~~vI~~vkPD~V~ 121 (378)
....|-|+|.. .+.-..++++.+++.--++++
T Consensus 195 ~~~~vnilG~~--~~~~~~ei~~lL~~~Gi~v~~ 226 (460)
T 2xdq_A 195 PHPPLVLFGSL--PDPVVTQLTLELKKQGIKVSG 226 (460)
T ss_dssp SCCCEEEESCC--CHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCcEEEEEec--CccHHHHHHHHHHHcCCeEEE
Confidence 45689999964 444467899999998888877
No 4
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.94 E-value=1.4e+02 Score=24.44 Aligned_cols=79 Identities=15% Similarity=0.265 Sum_probs=46.5
Q ss_pred cccccCCCCCCchhhhhhhhhhHHHHHhhchhhhhhhccCceeeeccccCCC-CCcccccccCCceEEEEeecCCChhhH
Q 017036 27 FKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGP-VPAWRSEFVEPENIWLIGTTHLSQDSA 105 (378)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~VyLVGTaHvS~~Sa 105 (378)
|-|++..++|+|+|+..|..---.+|.+-. .+.|..+.++.+--+- =+....+..++..|++.+. ++++.
T Consensus 16 i~ip~~~~~p~fn~ig~IIGpgG~tiK~I~------~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~---~~e~i 86 (119)
T 2yqr_A 16 LFVGLEHAVPTFNVKEKVEGPGCSYLQHIQ------IETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHP---KPEGL 86 (119)
T ss_dssp EECCCTTSCTTTCHHHHHSCGGGHHHHHHH------HHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEES---SHHHH
T ss_pred EEcCCccCCCCCCeeeeEECCCChHHHHHH------HHHCCEEEEecCCccccccccccccCCCcEEEEEeC---CHHHH
Confidence 566677678999999999875545544322 2567777776431100 0122234455667777764 55666
Q ss_pred HHHHHHHHH
Q 017036 106 ADVERVVRA 114 (378)
Q Consensus 106 ~~V~~vI~~ 114 (378)
+...+.|+.
T Consensus 87 ~~A~~~Ie~ 95 (119)
T 2yqr_A 87 AAAKKLCEN 95 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665555
No 5
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=30.59 E-value=30 Score=29.89 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=24.1
Q ss_pred EeecCCChhh--------HHHHHHHHHHcCCCeEEEeecc
Q 017036 95 IGTTHLSQDS--------AADVERVVRAIKPDNVVVELCR 126 (378)
Q Consensus 95 VGTaHvS~~S--------a~~V~~vI~~vkPD~V~VELc~ 126 (378)
.||.+.+..+ .+.+.++|++.+||.|+||---
T Consensus 30 ~G~i~t~~~~~~~Rl~~i~~~l~~~i~~~~Pd~vaiE~vf 69 (158)
T 1hjr_A 30 SGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVF 69 (158)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECC
T ss_pred eeEEECCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 4777776222 4568999999999999999543
No 6
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}
Probab=28.78 E-value=89 Score=29.67 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=37.6
Q ss_pred hhchhhhhhhccCceeeeccccCCCCCcccccccCCceEEEEeecCCChhhHHHHHHHHHHcC
Q 017036 54 KACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIK 116 (378)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~VyLVGTaHvS~~Sa~~V~~vI~~vk 116 (378)
..||+.+.-..+-+.++--+- . .++.+...|-+|||.+.|....+-.+++.++..
T Consensus 79 ~~YP~~L~~i~dpP~~Lf~~G---~-----~~ll~~~~vaIVGsR~~s~yg~~~a~~l~~~La 133 (288)
T 3uqz_A 79 DCYPWDLSEIYDAPVLLFYKG---N-----LDLLKFPKVAVVGSRACSKQGAKSVEKVIQGLE 133 (288)
T ss_dssp TTSCHHHHTSTTCCSEEEEEE---C-----GGGGGSCEEEEEECTTCCHHHHHHHHHHHHTTT
T ss_pred ccchHHHHhCCCCCeeEEEEe---C-----hHHhcCCcEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 468887777666555553221 1 233445689999999999998888888776643
No 7
>2o0q_A Hypothetical protein CC0527; PSI, protein structure initiative, northeast structural genomics consortium, NESG, structural genomics; 1.80A {Caulobacter vibrioides} SCOP: d.166.1.7 PDB: 2jqn_A 2o0p_A
Probab=26.60 E-value=37 Score=27.87 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=26.9
Q ss_pred EeecCCChhhHHHHHHHHHHc---CCCeEEEeeccchhcc
Q 017036 95 IGTTHLSQDSAADVERVVRAI---KPDNVVVELCRSRAGI 131 (378)
Q Consensus 95 VGTaHvS~~Sa~~V~~vI~~v---kPD~V~VELc~~R~~~ 131 (378)
-|-.|.|. +++|.++.+.. +.|.|++++|.++...
T Consensus 31 dGFIH~St--~~Qv~~ta~~~f~~~~~L~lL~id~~~l~~ 68 (115)
T 2o0q_A 31 DGFIHLSA--GEQAQETAAKWFRGQANLVLLAVEAEPLGE 68 (115)
T ss_dssp HTSEECEE--HHHHHHHHHHHCTTCCSEEEEEEESGGGCT
T ss_pred CCeEECCC--HHHHHHHHHHHcCCCCCEEEEEEcHHHCCC
Confidence 36679994 56677776654 7899999999999753
No 8
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=21.93 E-value=56 Score=27.23 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCCeEEEe
Q 017036 105 AADVERVVRAIKPDNVVVE 123 (378)
Q Consensus 105 a~~V~~vI~~vkPD~V~VE 123 (378)
.+.+.+.|++.+||+||+.
T Consensus 23 ~~~i~~~i~~~~pDIi~LQ 41 (250)
T 4f1h_A 23 ARGLCSYLALYTPDVVFLQ 41 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5678899999999999984
No 9
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.91 E-value=94 Score=24.45 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=30.6
Q ss_pred CCCCCccccccCCCCCCchhhhhhhhhhHHHHHhhchhhhhhhcc
Q 017036 21 TKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADD 65 (378)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (378)
+.+.+|. +.|-|||||- ..+.+.+.+-|+++=|+..+.+..
T Consensus 8 ~~~~~p~-~~ii~PPpdi---r~iIdktA~fVaknG~~FE~~i~~ 48 (90)
T 2e5z_A 8 TSALAPV-AAIIPPPPDV---QPVIDKLAEYVARNGLKFETSVRA 48 (90)
T ss_dssp CCCCCCC-CSCCCCCTTT---HHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred cccCCCC-CCccCCCHHH---HHHHHHHHHHHHHccHHHHHHHHH
Confidence 4456663 3566777773 578889999999999999988853
No 10
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=20.65 E-value=34 Score=29.12 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=27.5
Q ss_pred EEEEeecCC----ChhhHHHHHHHHHHcCCCeEEEeecc
Q 017036 92 IWLIGTTHL----SQDSAADVERVVRAIKPDNVVVELCR 126 (378)
Q Consensus 92 VyLVGTaHv----S~~Sa~~V~~vI~~vkPD~V~VELc~ 126 (378)
..-+||.+. .....+.+.++|++.+||.|+|+++-
T Consensus 27 a~p~~~I~~~~~r~~~~~~~l~~li~~~~~~~ivVGlP~ 65 (150)
T 1vhx_A 27 AQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPK 65 (150)
T ss_dssp EEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCC
T ss_pred EeeEEEEEcCCcchHHHHHHHHHHHHHcCCCEEEEeeee
Confidence 333677754 23468999999999999999999983
Done!