BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017037
(378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 275 RLDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYK 334
+D D ++YEELLALG+ +G+ S GLS D I+ ++ +Q +CVIC +Y+
Sbjct: 237 EMDPDELSYEELLALGDIVGTESRGLSADTIASLPSKRYKEGDNQNGTNESCVICRLDYE 296
Query: 335 NMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
+ +D+ L C H YH CI WL + VCP+C A V
Sbjct: 297 DDEDL-ILLPCKHSYHSECINNWLKINKVCPVCSAEV 332
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 276 LDIDNMTYEELLALGERIGSVSTGLSEDLISRCLTESI-YCSADQMQEEGN-CVICLEEY 333
+D D MTYEEL+ LGE +G+ S GLS++LI T+ + S + G CVIC +Y
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQLKY 204
Query: 334 KNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 374
K + L C H YH CI KWLS+ VCP+C + V +
Sbjct: 205 KIGERQMNLP-CKHVYHSECISKWLSINKVCPVCNSEVFGE 244
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 261 LYGSRGMLDQHR----DMRLDIDNMTYEELLALGERIGSVSTGL-SEDLISRCLTESIYC 315
+Y G+ +H + L DN YE+LLAL +G + S + + R Y
Sbjct: 696 IYVFGGLFPEHHPVLSTVSLFSDNPMYEDLLALTTYLGPAKKPVASHEDVKRSGGLFAYF 755
Query: 316 SADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKA-SVMA 373
+ +C+ICLE Y N D L++C H +H CI +WL+ N CP+C+A V
Sbjct: 756 DDASLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAHGVTT 815
Query: 374 DSEKE 378
+E+E
Sbjct: 816 QAEEE 820
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 274 MRLDIDNM---TYEELLALGERIGSVST-GLSEDLISRCLTESIYCSADQMQEEGNCVIC 329
+ LD+D++ YE LL L ER+G GL++ I + L + + E+ CV+C
Sbjct: 341 LDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADIEQ-LPSYRFNLENHQSEQTLCVVC 399
Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 369
++++ + L C H++H C+ KWL CPIC+A
Sbjct: 400 FSDFESRQLLRVLP-CNHEFHAKCVDKWLKTNRTCPICRA 438
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 282 TYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGN------------CVIC 329
+YEELL L +R+G+V+ G ++ I R Y +G C IC
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTIC 298
Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
L ++ +DV L C H +H C+ +WL+M CPIC+ +
Sbjct: 299 LSMLEDGEDVRRL-PCMHLFHQLCVDQWLAMSKKCPICRVDI 339
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 282 TYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGN------------CVIC 329
+YEELL L +R+G+V+ G ++ I R Y +G C IC
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTIC 297
Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
L ++ +DV L C H +H C+ +WL+M CPIC+ +
Sbjct: 298 LSMLEDGEDVRRL-PCMHLFHQLCVDQWLAMSKKCPICRVDI 338
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 274 MRLDIDNM---TYEELLALGERIGSVST-GLSEDLISRCLTESIYCSADQMQEEGNCVIC 329
+ LD+D++ YE LL L ER+G GL++ I + L + E+ CV+C
Sbjct: 325 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQ-LPSYRFNPDSHQSEQTLCVVC 383
Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 369
+++ + L C H++H C+ KWL CPIC+A
Sbjct: 384 FSDFEARQLLRVLP-CNHEFHTKCVDKWLKANRTCPICRA 422
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 283 YEELLALGERIGSVSTGLSEDLISRCL------TESIYCS-----ADQMQEEGNCVICLE 331
+EEL+ L ER+G+V+ G S+ I RC ++C + E C ICL
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICLS 939
Query: 332 EYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 378
+ +DV L C H +H C+ +WL CPIC+ + A E
Sbjct: 940 ILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 985
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 274 MRLDIDN---MTYEELLALGERIGSVST-GLSEDLISRCLTESIYCSADQMQEEGNCVIC 329
LD+++ YE LL L ER+G GL++ I + L + ++ E+ CV+C
Sbjct: 411 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQ-LPSYRFNPSNHQSEQTLCVVC 469
Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA---SVMADSE 376
+ ++++ + L C H++H C+ KWL CPIC+A V DSE
Sbjct: 470 MCDFESRQLLRVLP-CNHEFHAKCVDKWLKGNRTCPICRADASEVHRDSE 518
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 302 EDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK 361
ED+I++ + + + EEG C IC+E +K DDV L C H +H CIK WL +
Sbjct: 374 EDVIAKMKVQKP--PKELIDEEGECTICMEMFKINDDVIQLP-CKHYFHENCIKPWLRVN 430
Query: 362 NVCPICKASVMADSEK 377
C IC+A V +S++
Sbjct: 431 GTCAICRAPVDPNSQQ 446
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 274 MRLDIDNM---TYEELLALGERIGSVST-GLSEDLISRCLTESIYCSADQMQEEGNCVIC 329
+ LD+D++ YE LL L ER+G GL++ I + L + E+ CV+C
Sbjct: 300 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQ-LPSYRFNPDSHQSEQTLCVVC 358
Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 369
+++ + L C H++H C+ KWL CPIC+A
Sbjct: 359 FSDFEVRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 397
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 274 MRLDIDN---MTYEELLALGERIGSVST-GLSEDLISRCLTESIYCSADQMQEEGNCVIC 329
LD+++ YE LL L ER+G GL++ I + L + + E+ CV+C
Sbjct: 408 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQ-LPSYRFNPNNHQSEQTLCVVC 466
Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA---SVMADSE 376
+ ++++ + L C H++H C+ KWL CPIC+A V DSE
Sbjct: 467 MCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE 515
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 274 MRLDIDNM---TYEELLALGERIGSVST-GLSEDLISRCLTESIYCSADQMQEEGNCVIC 329
+ LD+D++ YE LL L ER+G GL++ I + L + E+ CV+C
Sbjct: 243 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQ-LPSYRFNPDSHQSEQTLCVVC 301
Query: 330 LEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 369
+++ + L C H++H C+ KWL CPIC+A
Sbjct: 302 FSDFEVRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 340
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 378
C +C+ EY + + L C H+YHV CI +WLS + CPIC+ +V+A +E
Sbjct: 570 CSVCITEYTEGNKLRKLP-CSHEYHVHCIDRWLSENSTCPICRRAVLASGNRE 621
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 374
E C ICL E++ + + L+ C H +HV CI KWLS ++ CP C+ S+ +
Sbjct: 104 EAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQ 155
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 283 YEELLALGERIGSVSTGLSEDLISRCL--------------TESIYCS-----ADQMQEE 323
+EEL+ L ER+G+V+ G S+ I RC ++C + E
Sbjct: 875 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 934
Query: 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 378
C ICL + +DV L C H +H C+ +WL CPIC+ + A E
Sbjct: 935 EKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 988
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 283 YEELLALGERIGSVSTGLSEDLISRCL--------------TESIYCS-----ADQMQEE 323
+EEL+ L ER+G+V+ G S+ I RC ++C + E
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 939
Query: 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 378
C ICL + +DV L C H +H C+ +WL CPIC+ + A E
Sbjct: 940 EKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 993
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 281 MTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVG 340
++ + L E GL+++ I T + + D ++ C +C+ EY + +
Sbjct: 527 LSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRN-FGENDALK---TCSVCITEYTEGNKLR 582
Query: 341 TLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 378
L C H+YH+ CI +WLS + CPIC+ +V+ S +E
Sbjct: 583 KLP-CSHEYHIHCIDRWLSENSTCPICRRAVLVASNRE 619
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 284 EELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLK 343
E + +RI + GL+E +I + +T Y S D + +C +CL E++ + + L
Sbjct: 101 EGFFSSTQRISTNGDGLNESMI-KSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLP 159
Query: 344 SCGHDYHVTCIKKWLSMKNVCPICKASVMA 373
C H +H+ CI WL + CP+C+A V
Sbjct: 160 KCNHAFHLPCIDTWLKSHSNCPLCRAFVTG 189
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 269 DQHRDMRLDIDNMTYEELLALGE---RIGSVSTGLSEDLISRCLTESIYCSADQMQEEGN 325
DQ + DI+ +T + LG+ + G +E +++ C T+S +QE+
Sbjct: 294 DQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPI-EHTLLQEDAE 352
Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375
C ICL Y++ ++ L CGH +H +C+ KWL + CP+CK +++ S
Sbjct: 353 CCICLSAYEDGTELRELP-CGHHFHCSCVDKWLYINATCPLCKYNILKSS 401
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 378
C +C+ EY + + L C H+YHV CI +WLS + CPIC+ +V++ +E
Sbjct: 546 CSVCITEYTEGNKLRKLP-CSHEYHVHCIDRWLSENSTCPICRRAVLSSGNRE 597
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 281 MTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVG 340
++ + L E GL+++ I T + + D ++ C +C+ EY + +
Sbjct: 544 LSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRN-FGENDALK---TCSVCITEYTEGNKLR 599
Query: 341 TLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 378
L C H+YHV CI +WLS + CPIC+ +V+ +E
Sbjct: 600 KLP-CSHEYHVHCIDRWLSENSTCPICRRAVLVAGNRE 636
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 20/108 (18%)
Query: 283 YEELLALGERIGSVSTGLSEDLISRCLTESIY--CSAD-------QMQEEG--------- 324
+EEL+ L ER+G+V+ G S+ I RC Y S D +++G
Sbjct: 840 FEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEATEEDTE 899
Query: 325 -NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
C ICL + +DV L C H +H C+ +WL CPIC+ +
Sbjct: 900 EKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 946
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 20/108 (18%)
Query: 283 YEELLALGERIGSVSTGLSEDLISRCLTESIY--CSAD-------QMQEEG--------- 324
+EEL+ L ER+G+V+ G S+ I RC Y S D +++G
Sbjct: 853 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 912
Query: 325 -NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
C ICL + +DV L C H +H C+ +WL CPIC+ +
Sbjct: 913 EKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 959
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 297 STGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKK 356
+TGL + +I+ +T Y D + E +C +CL E++ + + L C H +H++CI
Sbjct: 149 TTGLQQSIINS-ITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDT 207
Query: 357 WLSMKNVCPICKASV 371
WLS CP+C+A +
Sbjct: 208 WLSSHTNCPLCRAGI 222
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 281 MTYEELLALGERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVG 340
++ + L E GL+++ I T + Y D ++ C +C+ EY + +
Sbjct: 662 LSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRN-YGENDALK---TCSVCITEYTEGNKLR 717
Query: 341 TLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 378
L C H+YH+ CI +WLS + CPIC+ +V+ +E
Sbjct: 718 KLP-CSHEYHIHCIDRWLSENSTCPICRRAVLVAGNRE 754
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 20/108 (18%)
Query: 283 YEELLALGERIGSVSTGLSEDLISRCLTESIY--CSAD-------QMQEEG--------- 324
+EEL+ L ER+G+V+ G S+ I RC Y S D +++G
Sbjct: 809 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 868
Query: 325 -NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
C ICL + +DV L C H +H C+ +WL CPIC+ +
Sbjct: 869 EKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 915
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 20/108 (18%)
Query: 283 YEELLALGERIGSVSTGLSEDLISRCLTESIY--CSAD-------QMQEEG--------- 324
+EEL+ L ER+G+V+ G S+ I RC Y S D +++G
Sbjct: 845 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEATEEDTE 904
Query: 325 -NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
C ICL + +DV L C H +H C+ +WL CPIC+ +
Sbjct: 905 EKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 951
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 300 LSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS 359
L E LI + +T Y D E +C +CL E++ + + L C H +HV CI WL
Sbjct: 134 LDESLI-KSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLK 192
Query: 360 MKNVCPICKASVMADSEKE 378
+ CP+C+A ++ S E
Sbjct: 193 SHSNCPLCRAFIVTSSAVE 211
>sp|Q9LUZ9|ATL63_ARATH RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2
SV=1
Length = 308
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373
CVICL ++ D L++CGH +HV CI WLS + CP+C++ V+A
Sbjct: 138 CVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPVLA 185
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
C ICL E+++ + + + C H +H +CI WLS ++ CP+C+AS+
Sbjct: 128 CAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASL 173
>sp|Q8H7N9|ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp.
japonica GN=Os03g0188200 PE=2 SV=1
Length = 353
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373
C +CL E+ + D++ L +C H +H CI WL+ CP+C+A++ A
Sbjct: 132 ECAVCLAEFADSDELRVLPACCHVFHPDCIDPWLAAAVTCPLCRANLTA 180
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 298 TGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 357
+GL + LI L +Y +E +C +CL E+ D + L +C H +H+ CI W
Sbjct: 117 SGLDQALID-ALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTW 175
Query: 358 LSMKNVCPICKASVMA 373
L + CP+C+ ++ +
Sbjct: 176 LLSNSTCPLCRGTLFS 191
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372
+ E+ +C ICL Y++ ++ L C H +H TCI KWL M+ CP+CK +++
Sbjct: 301 LAEDADCCICLSSYEDGAELHALP-CNHHFHSTCIVKWLKMRATCPLCKYNIL 352
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373
QE +C +CL E+ D + L C H +H+ CI WL + CP+C+ ++ +
Sbjct: 138 QEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFS 190
>sp|Q9H9V4|RN122_HUMAN RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2
Length = 155
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 317 ADQMQEEG-NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375
A ++Q G C +CLE++K D++G L C H +H C+ KWL ++ VCP+C + + S
Sbjct: 83 AKKLQLYGQTCAVCLEDFKGKDELGVL-PCQHAFHRKCLVKWLEVRCVCPMCNKPIASPS 141
Query: 376 E 376
E
Sbjct: 142 E 142
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 298 TGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 357
+GL E LI++ +T Y D +C +CL E+ + + + L C H +H CI W
Sbjct: 130 SGLDETLINK-ITVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTW 188
Query: 358 LSMKNVCPICKASV 371
L + CP+C+A++
Sbjct: 189 LKSHSNCPLCRANI 202
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 322 EEGN---CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICK 368
EEG+ C ICL ++ + +++ L CGH +HV CI KWL ++ CP C+
Sbjct: 95 EEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCR 144
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 269 DQHRDMRLDIDNMTYEELLALG--ERIGSVSTGLSEDLISRCLTESIYCSADQMQEEGNC 326
DQ + DID M G E++ +G + +++ C T+S E+ C
Sbjct: 284 DQEGASKNDIDQMPKFRFTKTGNVEKL----SGKARGIMTECGTDSPI-ERSLSPEDAEC 338
Query: 327 VICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 378
ICL EY++ ++ L C H +H TCI KWL + + CP+CK +++ ++ E
Sbjct: 339 CICLCEYEDGVELRELP-CNHHFHCTCIDKWLHINSRCPLCKFNILKNANNE 389
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 299 GLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL 358
GL ED I + + +Y A C ICL +YK + L C H +H+ CI WL
Sbjct: 121 GLDEDTI-QSYPKILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWL 179
Query: 359 SMKNVCPICKASVM 372
+ CP+C+ S +
Sbjct: 180 RLNPTCPVCRTSPL 193
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375
+C +CL E++ D V TL C H +H+ CI +WL CP+C+ +++ +
Sbjct: 155 DCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGSA 205
>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2
SV=1
Length = 227
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371
C +CL E++ D+ L CGH +HV CI W ++ CP+C+A V
Sbjct: 108 CSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPV 153
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 293 IGSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVT 352
+ + GLS+D I L IY + ++ C +CL +Y+ + + + SCGH +H+
Sbjct: 80 LSTAELGLSKD-IREMLPVVIY-KESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHME 137
Query: 353 CIKKWLSMKNVCPICKASVM 372
CI WL+ CP+C+ S++
Sbjct: 138 CIDLWLTSHTTCPLCRLSLI 157
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 276 LDIDNMTYEELLALGERIGSVSTGL-SEDLISRCLTESIYCSADQMQEEGNCVICLEEYK 334
L D+ TYE++L L IG + S+ + + + D+ C++CL ++
Sbjct: 479 LFTDSPTYEDMLLLNSIIGIEKPPVASQKDLEKAGGVFPFSGTDER-----CLVCLSNFE 533
Query: 335 NMDDVGTLKSCGHDYHVTCIKKWL-SMKNVCPICKASVMA 373
D+ LK C H +H CI +WL S +N CP+C+ +A
Sbjct: 534 LNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTKGVA 573
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 369
Q +CVICL +++ + V + CGH +HV C+ WLS CP+C++
Sbjct: 135 QRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 293 IGSVSTGLSEDLISRCLTESIYCSADQMQEEG-NCVICLEEYKNMDDVGTLKSCGHDYHV 351
+ S + GL + LI + + + + G +C ICL E+ + + L C H +HV
Sbjct: 121 LESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHV 180
Query: 352 TCIKKWLSMKNVCPICKASVMADSEKE 378
CI +WL + CP+C+A ++ + ++
Sbjct: 181 VCIDRWLKSHSNCPLCRAKIIVPTTQQ 207
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 326 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEK 377
C ICL E ++ + V L C H +H+ CI WL CP+C++++ A S K
Sbjct: 124 CAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNK 175
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 297 STGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKK 356
+TGL + I R Y SA + C ICL E+ + D V + C H +H CI
Sbjct: 75 NTGL-DPFIIRSFPVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDL 133
Query: 357 WLSMKNVCPICKASV 371
W + CP+C+ +
Sbjct: 134 WFELHKTCPVCRCEL 148
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 374
G C+ICLEE+ +V L C H++HV CI +WL + CP C+ SV D
Sbjct: 233 GECLICLEEFHIGHEVRGLP-CAHNFHVECIDQWLRLNVKCPRCRCSVFPD 282
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372
E CV+CL E+K+ + + + C H +H C+ WLS + CPIC+A V+
Sbjct: 82 ELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKVV 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,418,788
Number of Sequences: 539616
Number of extensions: 6931049
Number of successful extensions: 16665
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 244
Number of HSP's that attempted gapping in prelim test: 16187
Number of HSP's gapped (non-prelim): 614
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)