BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017040
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 241 bits (614), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 168/302 (55%), Gaps = 13/302 (4%)
Query: 90 LRMDYYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDN 149
L++ +Y +CP E +V+ AV +RMHFHDCF+ GCD SVL+DST +N
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 150 KAEKDS-PGNLSLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPK 208
AEKD+ P N SLRG+EVI AK+ +E CP VSC AG Y +P
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 209 GRKDGRRS-KIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCSSFKS 267
GR+DG S E +P P FNA++LI +F + TA EMV LSGAH+IGVA CSSF +
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 268 RL------TGVDPTLDSDFAKTLSKTCSAGDNAEQPFDA-----TRNDFDNLYFNALIRK 316
RL +G+DPTL +A L TC A P T + DN+Y+ +
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLT 241
Query: 317 AGVLFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRK 376
G+L SDQ L+T A AAV AMN + F QAMVKMG ++V G +GE+R NC
Sbjct: 242 LGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSV 301
Query: 377 IN 378
+N
Sbjct: 302 VN 303
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 165/297 (55%), Gaps = 12/297 (4%)
Query: 90 LRMDYYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDN 149
L ++Y CP +K+AV +R+HFHDCF++GCD SVL+D T +
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 150 KAEKDS-PGNLSLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPK 208
EK + P S+RG+EVID K+Q+E CPGVVSC GG +++
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 209 GRKDGRRSKIED-TINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCSSFKS 267
GR+D + + +LP P FN S LI AF +GFT +E+V LSGAHTIG A+C++F++
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 268 RL---TGVDPTLDSDFAKTLSKTCSA--GDNAEQPFDATR-NDFDNLYFNALIRKAGVLF 321
R+ + +DPT +AK+L C + GD PFD T N FDN Y+ L K G+L
Sbjct: 182 RIYNESNIDPT----YAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLH 237
Query: 322 SDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L T + V Y+ N A F DF AM+KMG + G G++R NCRK N
Sbjct: 238 SDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 197 bits (502), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 163/294 (55%), Gaps = 8/294 (2%)
Query: 89 GLRMDYYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQD 148
GL D+Y TCP E IV+ V +R+HFHDCF++GCD SVL+D +
Sbjct: 8 GLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSAT 67
Query: 149 NKAEKDSPGNLSLR--GYEVIDDAKNQLEEQCPG-VVSCXXXXXXXXXXXXFWAGGPIYD 205
E+ +P NL+LR ++ ++D +++LE +C G VVSC +GGP Y
Sbjct: 68 GPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYR 127
Query: 206 IPKGRKDGRR-SKIEDTI-NLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCS 263
+P GR+D R + +D + +LP P+ N L+ G+ G A ++V +SG HTIG+A CS
Sbjct: 128 VPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCS 187
Query: 264 SFKSRL-TGVDPTLDSDFAKTLSKTCSA-GDNAEQPFDA-TRNDFDNLYFNALIRKAGVL 320
SF+ RL DPT+ F L +TC A G + D T N FDN Y+ L+ + G+
Sbjct: 188 SFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVRTPNVFDNKYYIDLVNREGLF 247
Query: 321 FSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNC 374
SDQ L TNA TR V +A +Q FF F ++ KMG + V+ +GEVR NC
Sbjct: 248 VSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNC 301
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 156/302 (51%), Gaps = 13/302 (4%)
Query: 90 LRMDYYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDN 149
L +Y TCP IV++ + +R+HFHDCF+ GCD S+L+D T
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 150 KAEKDSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPK 208
++EK++ N+ S RG+ V+D+ K LE CPGVVSC AGGP + +
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 209 GRKDGRRSKIED-TINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCSSFKS 267
GR+D + + ++P P + S + F G ++V LSGAHT G ARC F +
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182
Query: 268 RL-----TG-VDPTLDSDFAKTLSKTCSAGDNAEQPFD---ATRNDFDNLYFNALIRKAG 318
RL TG DPTL+S TL + C +A + +T + FDN YF L G
Sbjct: 183 RLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDG 242
Query: 319 VLFSDQTLL--TNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRK 376
+L SDQ L T + T A V +A NQ +FF F Q+M+ MG + G GE+R +C+K
Sbjct: 243 LLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKK 302
Query: 377 IN 378
+N
Sbjct: 303 VN 304
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 150/302 (49%), Gaps = 17/302 (5%)
Query: 90 LRMDYYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDN 149
L D Y +CP QIV+ V +R+HFHDCF+ GCD S+L+D
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADSE 61
Query: 150 KAEKDSPGNLSLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKG 209
K P S RG+EVID K +E CPGVVSC +GGP + + G
Sbjct: 62 KLAI--PNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALG 119
Query: 210 RKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCSSFKSRL 269
RKDG + NLP P +I F ++V LSGAHT G A+C+ F +RL
Sbjct: 120 RKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRL 179
Query: 270 ---TGV---DPTLDSDFAKTLSKTCSAGDNAE--QPFD-ATRNDFDNLYFNALIRKAGVL 320
TG D TL++ L C G N+ P D +T + FDN YF L+ G+L
Sbjct: 180 FNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLL 239
Query: 321 FSDQTLLTN----AKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRK 376
SDQ L ++ T+ V Y+ +Q++FF DF AM++MG ++ G GEVR NCR
Sbjct: 240 SSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMG--NISNGASGEVRTNCRV 297
Query: 377 IN 378
IN
Sbjct: 298 IN 299
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 165/302 (54%), Gaps = 13/302 (4%)
Query: 90 LRMDYYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDN 149
L +Y TCP IV + +R+HFHDCF++GCDGSVL+++T
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 150 KAEKDSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPK 208
++E+D+ N+ S+RG +V++D K +E CP VSC GGP + +P
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 209 GRKDG-RRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCSSFKS 267
GR+D ++ NLP P FN ++L +F +G ++V LSG HT G ARCS+F +
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 268 RL-----TG-VDPTLDSDFAKTLSKTC---SAGDNAEQPFDATRNDFDNLYFNALIRKAG 318
RL TG DPTL++ + + L C + GDN +T + FDN Y++ L++ G
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNG 241
Query: 319 VLFSDQTLLTN--AKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRK 376
+L SDQ L + A T VN ++ NQ FF +F+ +M+KMG + V G +GE+R C
Sbjct: 242 LLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNF 301
Query: 377 IN 378
+N
Sbjct: 302 VN 303
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 149/302 (49%), Gaps = 13/302 (4%)
Query: 90 LRMDYYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDN 149
L +Y TCP +V+ V +R+HFHDCF+ GCD S+L+D++
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 150 KAEKDS-PGNLSLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPK 208
+EK++ P S RG+ V+D+ K LE CPGVVSC +GGP + +
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 209 GRKDG-RRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCSSFKS 267
GR+D ++ ++P PT S + F G ++V LSGAHT G A C F +
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSN 183
Query: 268 RL------TGVDPTLDSDFAKTLSKTCSA---GDNAEQPFDATRNDFDNLYFNALIRKAG 318
RL DPTL++ TL + C G + +T + FDN YF L G
Sbjct: 184 RLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNG 243
Query: 319 VLFSDQTLL--TNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRK 376
+L SDQ L T + T A V +A NQ +FF F Q+M+ MG + G GE+R +C+K
Sbjct: 244 LLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCKK 303
Query: 377 IN 378
N
Sbjct: 304 TN 305
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 151/300 (50%), Gaps = 15/300 (5%)
Query: 94 YYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDNKAEK 153
+Y +CP IV++ + +R+HFHDCF+ GCD S+L+D+T + EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 154 DSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKGRKD 212
D+ GN S RG+ VID K +E CP VSC AGGP + +P GR+D
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 213 GRRSKIE-DTINLPFPTFNASELIRAFGQRGFT-AQEMVVLSGAHTIGVARCSSFKSRL- 269
++ ++ NLP P F +L +F G + ++V LSG HT G +C S RL
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIMDRLY 186
Query: 270 ----TGV-DPTLDSDFAKTLSKTCSAGDNAEQPFD---ATRNDFDNLYFNALIRKAGVLF 321
TG+ DPTL++ + +TL C N D T FDN Y+ L + G++
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQ 246
Query: 322 SDQTLLTNAK---TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L ++ T V +A + FF F +AM +MG + G +G++R NCR +N
Sbjct: 247 SDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 150/300 (50%), Gaps = 15/300 (5%)
Query: 94 YYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDNKAEK 153
+Y +CP IV++ + +R+HFHDCF+ GCD S+L+D+T + EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 154 DSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKGRKD 212
D+ GN S RG+ VID K +E CP VSC AGGP + +P GR+D
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 213 GRRSKIE-DTINLPFPTFNASELIRAFGQRGFT-AQEMVVLSGAHTIGVARCSSFKSRL- 269
++ ++ NLP P F +L +F G + ++V LSG HT G +C RL
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 270 ----TGV-DPTLDSDFAKTLSKTCSAGDNAEQPFD---ATRNDFDNLYFNALIRKAGVLF 321
TG+ DPTL++ + +TL C N D T FDN Y+ L + G++
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQ 245
Query: 322 SDQTLLTNAK---TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L ++ T V +A + FF F +AM +MG + G +G++R NCR +N
Sbjct: 246 SDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 150/300 (50%), Gaps = 15/300 (5%)
Query: 94 YYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDNKAEK 153
+Y +CP IV++ + +R+HFHDCF+ GCD S+L+D+T + EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 154 DSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKGRKD 212
D+ GN S RG+ VID K +E CP VSC AGGP + +P GR+D
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 213 GRRSKIE-DTINLPFPTFNASELIRAFGQRGFT-AQEMVVLSGAHTIGVARCSSFKSRL- 269
++ ++ NLP P F +L +F G + ++V LSG HT G +C RL
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 270 ----TGV-DPTLDSDFAKTLSKTCSAGDNAEQPFDA---TRNDFDNLYFNALIRKAGVLF 321
TG+ DPTL++ + +TL C N D T FDN Y+ L + G++
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQKGLIQ 246
Query: 322 SDQTLLTNAK---TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L ++ T V +A + FF F +AM +MG + G +G++R NCR +N
Sbjct: 247 SDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 150/300 (50%), Gaps = 15/300 (5%)
Query: 94 YYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDNKAEK 153
+Y +CP IV++ + +R+HFHDCF+ GCD S+L+D+T + EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 154 DSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKGRKD 212
D+ GN S RG+ VID K +E CP VSC AGGP + +P GR+D
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 213 GRRSKIE-DTINLPFPTFNASELIRAFGQRGFT-AQEMVVLSGAHTIGVARCSSFKSRL- 269
++ ++ NLP P F +L +F G + ++V LSG HT G +C RL
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 270 ----TGV-DPTLDSDFAKTLSKTCSAGDNAEQPFD---ATRNDFDNLYFNALIRKAGVLF 321
TG+ DPTL++ + +TL C N D T FDN Y+ L + G++
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQ 246
Query: 322 SDQTLLTNAK---TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L ++ T V +A + FF F +AM +MG + G +G++R NCR +N
Sbjct: 247 SDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 150/300 (50%), Gaps = 15/300 (5%)
Query: 94 YYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDNKAEK 153
+Y +CP IV++ + +R+HFHDCF+ GCD S+L+D+T + EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 154 DSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKGRKD 212
D+ GN S RG+ VID K +E CP VSC AGGP + +P GR+D
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 213 GRRSKIE-DTINLPFPTFNASELIRAFGQRGFT-AQEMVVLSGAHTIGVARCSSFKSRL- 269
++ ++ NLP P F +L +F G + ++V LSG HT G +C RL
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 270 ----TGV-DPTLDSDFAKTLSKTCSAGDNAEQPFD---ATRNDFDNLYFNALIRKAGVLF 321
TG+ DPTL++ + +TL C N D T FDN Y+ L + G++
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQ 245
Query: 322 SDQTLLTNAK---TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L ++ T V +A + FF F +AM +MG + G +G++R NCR +N
Sbjct: 246 SDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 150/300 (50%), Gaps = 15/300 (5%)
Query: 94 YYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDNKAEK 153
+Y +CP IV++ + +R+HFHDCF+ GCD S+L+D+T + EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 154 DSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKGRKD 212
D+ GN S RG+ VID K +E CP VSC AGGP + +P GR+D
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 213 GRRSKIE-DTINLPFPTFNASELIRAFGQRGFT-AQEMVVLSGAHTIGVARCSSFKSRL- 269
++ ++ NLP P F +L +F G + ++V LSG HT G +C RL
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 270 ----TGV-DPTLDSDFAKTLSKTCSAGDNAEQPFD---ATRNDFDNLYFNALIRKAGVLF 321
TG+ DPTL++ + +TL C N D T FDN Y+ L + G++
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQ 245
Query: 322 SDQTLLTNAK---TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L ++ T V +A + FF F +AM +MG + G +G++R NCR +N
Sbjct: 246 SDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 150/300 (50%), Gaps = 15/300 (5%)
Query: 94 YYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDNKAEK 153
+Y +CP IV++ + +R+HFHDCF+ GCD S+L+D+T + EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 154 DSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKGRKD 212
D+ GN S RG+ VID K +E CP VSC AGGP + +P GR+D
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 213 GRRSKIE-DTINLPFPTFNASELIRAFGQRGFT-AQEMVVLSGAHTIGVARCSSFKSRL- 269
++ ++ NLP P F +L +F G + ++V LSG HT G +C RL
Sbjct: 127 SLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 270 ----TGV-DPTLDSDFAKTLSKTCSAGDNAEQPFD---ATRNDFDNLYFNALIRKAGVLF 321
TG+ DPTL++ + +TL C N D T FDN Y+ L + G++
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQ 246
Query: 322 SDQTLLTNAK---TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L ++ T V +A + FF F +AM +MG + G +G++R NCR +N
Sbjct: 247 SDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 150/300 (50%), Gaps = 15/300 (5%)
Query: 94 YYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDNKAEK 153
+Y +CP IV++ + +R+HFHDCF+ GCD S+L+D+T + EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 154 DSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKGRKD 212
D+ GN S RG+ VID K +E CP VSC AGGP + +P GR+D
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 213 GRRSKIE-DTINLPFPTFNASELIRAFGQRGFT-AQEMVVLSGAHTIGVARCSSFKSRL- 269
++ ++ NLP P F +L +F G + ++V LSG HT G +C RL
Sbjct: 127 SLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 270 ----TGV-DPTLDSDFAKTLSKTCSAGDNAEQPFD---ATRNDFDNLYFNALIRKAGVLF 321
TG+ DPTL++ + +TL C N D T FDN Y+ L + G++
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQ 246
Query: 322 SDQTLLTNAK---TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L ++ T V +A + FF F +AM +MG + G +G++R NCR +N
Sbjct: 247 SDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 150/300 (50%), Gaps = 15/300 (5%)
Query: 94 YYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDNKAEK 153
+Y +CP IV++ + +R+HFHDCF+ GCD S+L+D+T + EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 154 DSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKGRKD 212
D+ GN S RG+ VID K +E CP VSC AGGP + +P GR+D
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 213 GRRSKIE-DTINLPFPTFNASELIRAFGQRGFT-AQEMVVLSGAHTIGVARCSSFKSRL- 269
++ ++ NLP P F +L +F G + ++V LSG H+ G +C RL
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIMDRLY 185
Query: 270 ----TGV-DPTLDSDFAKTLSKTCSAGDNAEQPFD---ATRNDFDNLYFNALIRKAGVLF 321
TG+ DPTL++ + +TL C N D T FDN Y+ L + G++
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQ 245
Query: 322 SDQTLLTNAK---TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L ++ T V +A + FF F +AM +MG + G +G++R NCR +N
Sbjct: 246 SDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 149/300 (49%), Gaps = 15/300 (5%)
Query: 94 YYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDNKAEK 153
+Y +CP IV++ + +R+HFHDCF+ GCD S+L+D+T + EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 154 DSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKGRKD 212
D+ GN S RG+ VID K +E CP VSC AGGP + +P GR+D
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 213 GRRSKIE-DTINLPFPTFNASELIRAFGQRGFT-AQEMVVLSGAHTIGVARCSSFKSRL- 269
++ ++ NLP P F +L +F G + ++V L G HT G +C RL
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIMDRLY 185
Query: 270 ----TGV-DPTLDSDFAKTLSKTCSAGDNAEQPFD---ATRNDFDNLYFNALIRKAGVLF 321
TG+ DPTL++ + +TL C N D T FDN Y+ L + G++
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQ 245
Query: 322 SDQTLLTNAK---TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L ++ T V +A + FF F +AM +MG + G +G++R NCR +N
Sbjct: 246 SDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 149/300 (49%), Gaps = 15/300 (5%)
Query: 94 YYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDNKAEK 153
+Y +CP IV++ + +R+HF DCF+ GCD S+L+D+T + EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSFRTEK 66
Query: 154 DSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKGRKD 212
D+ GN S RG+ VID K +E CP VSC AGGP + +P GR+D
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 213 GRRSKIE-DTINLPFPTFNASELIRAFGQRGFT-AQEMVVLSGAHTIGVARCSSFKSRL- 269
++ ++ NLP P F +L +F G + ++V LSG HT G +C RL
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 270 ----TGV-DPTLDSDFAKTLSKTCSAGDNAEQPFD---ATRNDFDNLYFNALIRKAGVLF 321
TG+ DPTL++ + +TL C N D T FDN Y+ L + G++
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQ 246
Query: 322 SDQTLLTNAK---TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L ++ T V +A + FF F +AM +MG + G +G++R NCR +N
Sbjct: 247 SDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 148/300 (49%), Gaps = 15/300 (5%)
Query: 94 YYIMTCPFGEQIVKNAVXXXXXXXXXXXXXXVRMHFHDCFIEGCDGSVLIDSTQDNKAEK 153
+Y +CP IV++ + + +HF DCF+ GCD S+L+D+T + EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSFRTEK 65
Query: 154 DSPGNL-SLRGYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPKGRKD 212
D+ GN S RG+ VID K +E CP VSC AGGP + +P GR+D
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 213 GRRSKIE-DTINLPFPTFNASELIRAFGQRGFT-AQEMVVLSGAHTIGVARCSSFKSRL- 269
++ ++ NLP P F +L +F G + ++V LSG HT G +C RL
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 270 ----TGV-DPTLDSDFAKTLSKTCSAGDNAEQPFD---ATRNDFDNLYFNALIRKAGVLF 321
TG+ DPTL++ + +TL C N D T FDN Y+ L + G++
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQ 245
Query: 322 SDQTLLTNAK---TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378
SDQ L ++ T V +A + FF F +AM +MG + G +G++R NCR +N
Sbjct: 246 SDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVN 305
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 75/170 (44%), Gaps = 34/170 (20%)
Query: 200 GGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIG 258
GGP GR+D E LP T + L FG+ G + Q++V LSG HTIG
Sbjct: 108 GGPEVPFHPGREDKPEPPPEG--RLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIG 165
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI--RK 316
A K R S F E P+ + FDN YF L+ K
Sbjct: 166 AAH----KER---------SGF--------------EGPWTSNPLIFDNSYFTELLTGEK 198
Query: 317 AGVL--FSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKE 364
G+L SD+ LLT++ R V YA ++ +FF D+ +A +K+ + E
Sbjct: 199 DGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELGFAE 248
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 74/173 (42%), Gaps = 37/173 (21%)
Query: 200 GGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIG 258
GGP GR+D E LP T + L FG+ G T Q++V LSG HTIG
Sbjct: 120 GGPEVPFHPGREDKPEPPPEG--RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG 177
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI--RK 316
A K R S F E P+ + FDN YF L+ K
Sbjct: 178 AAH----KER---------SGF--------------EGPWTSNPLIFDNSYFTELLSGEK 210
Query: 317 AGVL--FSDQTLLTNAKTRAAVNGYAMNQAMFFLDF---QQAMVKMGMVDVKE 364
G+L SD+ LL++ R V+ YA ++ FF D+ Q + ++G D E
Sbjct: 211 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFADAHE 263
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 200 GGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIG 258
GGP GR+D E LP T + L FG+ G T Q++V LSG HTIG
Sbjct: 108 GGPEVPFHPGREDKPEPPPEG--RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG 165
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI--RK 316
A K R S F E P+ + FDN YF L+ K
Sbjct: 166 AAH----KER---------SGF--------------EGPWTSNPLIFDNSYFTELLSGEK 198
Query: 317 AGVL--FSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G+L SD+ LL++ R V+ YA ++ FF D+ +A K+
Sbjct: 199 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 200 GGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIG 258
GGP GR+D E LP T + L FG+ G T Q++V LSG HTIG
Sbjct: 108 GGPEVPFHPGREDKPEPPPEG--RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG 165
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI--RK 316
A K R S F E P+ + FDN YF L+ K
Sbjct: 166 AAH----KER---------SGF--------------EGPWTSNPLIFDNSYFTELLSGEK 198
Query: 317 AGVL--FSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G+L SD+ LL++ R V+ YA ++ FF D+ +A K+
Sbjct: 199 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 200 GGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIG 258
GGP GR+D E LP T + L FG+ G T Q++V LSG HTIG
Sbjct: 108 GGPEVPFHPGREDKPEPPPEG--RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG 165
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI--RK 316
A K R S F E P+ + FDN YF L+ K
Sbjct: 166 AAH----KER---------SGF--------------EGPWTSNPLIFDNSYFTELLSGEK 198
Query: 317 AGVL--FSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G+L SD+ LL++ R V+ YA ++ FF D+ +A K+
Sbjct: 199 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 34/163 (20%)
Query: 200 GGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIG 258
GGP GR+D E LP T + L FG+ G T Q++V LSG HTIG
Sbjct: 120 GGPEVPFHPGREDKPEPPPEG--RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG 177
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI--RK 316
A + S F E P+ + FDN YF L+ K
Sbjct: 178 AAHKEA-------------SGF--------------EGPWTSNPLIFDNSYFTELLSGEK 210
Query: 317 AGVL--FSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G+L SD+ LL++ R V+ YA ++ FF D+ +A K+
Sbjct: 211 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 200 GGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIG 258
GGP GR+D E LP T + L FG+ G T Q++V LSG HTIG
Sbjct: 120 GGPEVPFHPGREDKPEPPPEG--RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG 177
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI--RK 316
A K R S F E P+ + FDN YF L+ K
Sbjct: 178 AAH----KER---------SGF--------------EGPWTSNPLIFDNSYFTELLSGEK 210
Query: 317 AGVL--FSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G+L SD+ LL++ R V+ YA ++ FF D+ +A K+
Sbjct: 211 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 200 GGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIG 258
GGP GR+D E LP T + L FG+ G T Q++V LSG HTIG
Sbjct: 120 GGPEVPFHPGREDKPEPPPEG--RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG 177
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI--RK 316
A K R S F E P+ + FDN YF L+ K
Sbjct: 178 AAH----KER---------SGF--------------EGPWTSNPLIFDNSYFTELLSGEK 210
Query: 317 AGVL--FSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G+L SD+ LL++ R V+ YA ++ FF D+ +A K+
Sbjct: 211 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 200 GGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIG 258
GGP GR+D E LP T + L FG+ G T Q++V LSG HTIG
Sbjct: 120 GGPEVPFHPGREDKPEPPPEG--RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG 177
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI--RK 316
A K R S F E P+ + FDN YF L+ K
Sbjct: 178 AAH----KER---------SGF--------------EGPWTSNPLIFDNSYFTELLSGEK 210
Query: 317 AGVL--FSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G+L SD+ LL++ R V+ YA ++ FF D+ +A K+
Sbjct: 211 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 200 GGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIG 258
GGP GR+D E LP T + L FG+ G T Q++V LSG HTIG
Sbjct: 108 GGPEVPFHPGREDKPEPPPEG--RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG 165
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI--RK 316
A K R S F E P+ + FDN YF L+ K
Sbjct: 166 AAH----KER---------SGF--------------EGPWTSNPLIFDNSYFTELLSGEK 198
Query: 317 AGVL--FSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G+L SD+ LL++ R V+ YA ++ FF D+ +A K+
Sbjct: 199 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 200 GGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIG 258
GGP GR+D E LP T + L FG+ G T Q++V LSG HTIG
Sbjct: 120 GGPEVPFHPGREDKPEPPPEG--RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG 177
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI--RK 316
A K R S F E P+ + FDN YF L+ K
Sbjct: 178 AAH----KER---------SGF--------------EGPWTSNPLIFDNSYFTELLSGEK 210
Query: 317 AGVL--FSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G+L SD+ LL++ R V+ YA ++ FF D+ +A K+
Sbjct: 211 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 71/163 (43%), Gaps = 34/163 (20%)
Query: 200 GGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIG 258
GGP GR+D E LP T + L FG+ G T Q++V LSG HTIG
Sbjct: 120 GGPEVPFHPGREDKPEPPPEG--RLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG 177
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI--RK 316
A K R S F E P+ + FDN YF L+ K
Sbjct: 178 AAH----KER---------SGF--------------EGPWTSNPLIFDNSYFTELLSGEK 210
Query: 317 AGVL--FSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G+L SD+ LL++ R V+ YA ++ FF D+ +A K+
Sbjct: 211 EGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 199 AGGPIYDIPKGRKD-GRRSKIEDTINLP--FPTFNASELIRAFGQRGFTAQEMVVLSGAH 255
AGGP + GR D + + LP P A L F + G +E+V LSGAH
Sbjct: 104 AGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVFYRMGLNDKEIVALSGAH 163
Query: 256 TIGVARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAE--QPFDATRNDFDNLYFNAL 313
T+G +R S + K +K G A Q + A FDN YF +
Sbjct: 164 TLGRSRPDR-------------SGWGKPETKYTKDGPGAPGGQSWTAQWLKFDNSYFKDI 210
Query: 314 IRKAG----VLFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEG 365
+ VL +D L + + YA + FF D+ +A K+ + K G
Sbjct: 211 KERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYAEAHAKLSNLGAKFG 266
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V LSGAHT+G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALSGAHTLGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAGVLF--SD 323
+ T + D+ F L + + +ND +N +++ K+G L +D
Sbjct: 188 EGPWTANNNVFDNSFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYLQLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAHT+G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ T + D+ F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPWTANNNVFDNSFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 67/169 (39%), Gaps = 48/169 (28%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVARCSSFKS 267
GR D D LP +A + +R F QR +E+V L GAHT+G
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHTLG--------- 178
Query: 268 RLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIR------------ 315
KT E P+DAT N FDN ++ L+
Sbjct: 179 ------------------KTHLKNSGYEGPWDATNNVFDNSFYLNLLNEDWKLEKNDANN 220
Query: 316 -----KAG--VLFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
K+G +L +D +L+ + K + V YA +Q FF DF +A K+
Sbjct: 221 EQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAHT+G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAGVLF--SD 323
+ T + D+ F L + + +ND +N +++ K+G L +D
Sbjct: 188 EGPWTANNNVFDNSFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYLQLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAHT+G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ T D+ F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPWTANPNVFDNSFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVARCSSFKS 267
GR D D LP +A +R F QR +E+V L GAH +G +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 184
Query: 268 RLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSDQT 325
G + ++F L + + +ND +N +++ K+G +L +D +
Sbjct: 185 EGGGANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTDYS 232
Query: 326 LLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVARCSSFKS 267
GR D D LP +A +R F QR +E+V L GAH +G +
Sbjct: 127 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 185
Query: 268 RLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSDQT 325
G + ++F L + + +ND +N +++ K+G +L +D +
Sbjct: 186 EGGGANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTDYS 233
Query: 326 LLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
L+ + K + V YA +Q FF DF +A K+
Sbjct: 234 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVARCSSFKS 267
GR D D LP +A +R F QR +E+V L GAH +G +
Sbjct: 132 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 190
Query: 268 RLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSDQT 325
G + ++F L + + +ND +N +++ K+G +L +D +
Sbjct: 191 EGGGANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTDYS 238
Query: 326 LLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
L+ + K + V YA +Q FF DF +A K+
Sbjct: 239 LIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 201 GPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGV 259
GP GR D D LP +A + +R F QR +E+V L GAH +G
Sbjct: 121 GPKIPWRAGRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGK 179
Query: 260 A--RCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKA 317
+ S ++ + ++F L + + +ND +N +++ K+
Sbjct: 180 THLKNSGYEGPWGAANNCFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KS 227
Query: 318 G--VLFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G +L +D +L+ + K + V YA +Q FF DF +A K+
Sbjct: 228 GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALKGAHALGKTHLKNSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 185 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 24/214 (11%)
Query: 150 KAEKDSPGNLSLR-GYEVIDDAKNQLEEQCPGVVSCXXXXXXXXXXXXFWAGGPIYDIPK 208
K E + P N L+ G++ ++ + ++ P + S W G P
Sbjct: 76 KKEFNDPSNAGLQNGFKFLE----PIHKEFPWISSGDLFSLGGVTAVQEWQG-PKIPWRC 130
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 128 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 186
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 187 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 234
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 235 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 268
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPWGAANNVFTNEFYLNL---------LNENWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 185 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 185 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 213 GRRSKIEDTI--NLPFPTFNA-SELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSFK 266
GR EDT N P ++ + +R F QR +E+V L GAH +G + S ++
Sbjct: 129 GRVDTPEDTTPDNGRLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE 188
Query: 267 SRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSDQ 324
+ ++F L + + +ND +N +++ K+G +L +D
Sbjct: 189 GPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTDY 236
Query: 325 TLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 237 SLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYIMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTELKNSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 185 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPFGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 185 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 185 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 201 GPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGV 259
GP GR D D LP +A + +R F QR +E+V L GAH +G
Sbjct: 114 GPKIPWRCGRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGK 172
Query: 260 A--RCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKA 317
+ S ++ + ++F L + + +ND +N +++ K+
Sbjct: 173 THLKRSGYEGPFGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KS 220
Query: 318 G--VLFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G +L +D +L+ + K + V YA +Q FF DF +A K+
Sbjct: 221 GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 262
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 132 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 190
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 191 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 238
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 239 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 128 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGY 186
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 187 EGPFGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 234
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 235 YSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKL 268
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPWGAANNVFTNEFYLNL---------LNENWKLEKNDANNEQWDS---KSGYMMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPWGAANNVFTNEFYLNL---------LNENWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 185 EGPYGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 201 GPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGV 259
GP GR D D LP +A +R F QR +E+V L GAH +G
Sbjct: 123 GPKIPWRAGRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGK 181
Query: 260 A--RCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKA 317
+ S ++ + ++F L + + +ND +N +++ K+
Sbjct: 182 THLKNSGYEGPWGCANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KS 229
Query: 318 G--VLFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
G +L +D +L+ + K + V YA +Q FF DF +A K+
Sbjct: 230 GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAGVLF--SD 323
+ + ++F L + + +ND +N +++ K+G + +D
Sbjct: 185 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMHLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPQGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDMDKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 185 EGPQGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + +++ L + + +ND +N +++ K+G +L +D
Sbjct: 185 EGPWGAANNVFTNEYYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 185 EGPGGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 190 EGPGGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPGGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 127 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 185
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 186 EGPGGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 233
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 234 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPGGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 132 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 190
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L ++
Sbjct: 191 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTE 238
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 239 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 189
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L ++
Sbjct: 190 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTN 237
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 238 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A + +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDA-DYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +
Sbjct: 188 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTX 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 59/179 (32%), Gaps = 48/179 (26%)
Query: 200 GGPIYDIPKGRKDGRRSKI-EDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIG 258
GGP GR D + + LP + S + F + GF QE V L GAHT G
Sbjct: 103 GGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG 162
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG 318
C S G P+ +N FDN +F L+ +
Sbjct: 163 --ECHIEFSGYHG-------------------------PWTHDKNGFDNSFFTQLLDEDW 195
Query: 319 V--------------------LFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
V L SD LL + R V YA + F DF A K+
Sbjct: 196 VLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKL 254
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L ++
Sbjct: 188 EGPGGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTN 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 59/179 (32%), Gaps = 48/179 (26%)
Query: 200 GGPIYDIPKGRKDGRRSKI-EDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIG 258
GGP GR D + + LP + S + F + GF QE V L GAHT G
Sbjct: 104 GGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG 163
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG 318
C S G P+ +N FDN +F L+ +
Sbjct: 164 --ECHIEFSGYHG-------------------------PWTHDKNGFDNSFFTQLLDEDW 196
Query: 319 V--------------------LFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
V L SD LL + R V YA + F DF A K+
Sbjct: 197 VLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKL 255
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 132 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 190
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +
Sbjct: 191 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTA 238
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 239 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 187
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++ L + + +ND +N +++ K+G +L +D
Sbjct: 188 EGPWGAANNVFTNEGYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 235
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 236 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GAH +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++ L + + +ND +N +++ K+G +L +D
Sbjct: 185 EGPWGAANNVFTNEKYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GA +G + S +
Sbjct: 127 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGY 185
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 186 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 233
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 234 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 58/179 (32%), Gaps = 48/179 (26%)
Query: 200 GGPIYDIPKGRKDGRRSKI-EDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIG 258
GGP GR D + + LP + S + F + GF QE V L GAHT
Sbjct: 104 GGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHT-- 161
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG 318
C +G P+ +N FDN +F L+ +
Sbjct: 162 ---CGETHIEFSGY----------------------HGPWTHDKNGFDNSFFTQLLDEDW 196
Query: 319 V--------------------LFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
V L SD LL + R V YA + F DF A K+
Sbjct: 197 VLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKL 255
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GA +G + S +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGY 184
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 185 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 232
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 233 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQR-GFTAQEMVVLSGAHTIGVA--RCSSF 265
GR D D LP +A +R F QR +E+V L GA +G + S +
Sbjct: 127 GRVDTPEDTTPDNGRLPDADKDAG-YVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGY 185
Query: 266 KSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--VLFSD 323
+ + ++F L + + +ND +N +++ K+G +L +D
Sbjct: 186 EGPWGAANNVFTNEFYLNL---------LNEDWKLEKNDANNEQWDS---KSGYMMLPTD 233
Query: 324 QTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM 357
+L+ + K + V YA +Q FF DF +A K+
Sbjct: 234 YSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 63/184 (34%), Gaps = 55/184 (29%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCSSFKSR 268
GR + ++ + + PF T + L R GF E V L AH+I A
Sbjct: 132 GRPEATQAAPDGLVPEPFHTID-QVLARMLDAGGFDEIETVXLLSAHSIAAAN------- 183
Query: 269 LTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYF-------NALIRKAGV-- 319
VDPT+ PFD+T FD+ +F A K G+
Sbjct: 184 --DVDPTISG-----------------LPFDSTPGQFDSQFFVETQLRGTAFPGKTGIQG 224
Query: 320 -----------LFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQ---QAMVKMG-----MV 360
L +D +++T + NQ DFQ A+ +G M+
Sbjct: 225 TVMSPLKGEMRLQTDHLFARDSRTACEWQSFVNNQTKLQEDFQFIFTALSTLGHDMNAMI 284
Query: 361 DVKE 364
D E
Sbjct: 285 DCSE 288
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 28/102 (27%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCSSFKSR 268
GR D + + + PF + ++ ++ G GF+ E+V L +H+I A
Sbjct: 125 GRPDAVAASPDHLVPEPFDSVDS--ILARMGDAGFSPVEVVWLLASHSIAAAD------- 175
Query: 269 LTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYF 310
GVDP++ PFD+T FD+ +F
Sbjct: 176 --GVDPSIPG-----------------TPFDSTPEVFDSQFF 198
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 28/102 (27%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCSSFKSR 268
GR D + + + PF + ++ ++ G GF+ E+V L +H+I A
Sbjct: 125 GRPDAVAASPDHLVPGPFDSVDS--ILARMGDAGFSPVEVVWLLASHSIAAAD------- 175
Query: 269 LTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYF 310
GVDP++ PFD+T FD+ +F
Sbjct: 176 --GVDPSIPG-----------------TPFDSTPEVFDSQFF 198
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 216 SKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCS-------SFKSR 268
K+E I PT A E I+ RG+ + V+SG I V + +F +R
Sbjct: 66 EKVEKAIKRITPTEGAEETIKELKNRGYV---VAVVSGGFDIAVNKIKEKLGLDYAFANR 122
Query: 269 LTGVDPTLDSDFAKTLSKTCSAGDNAEQ 296
L D L D + K + G+ E+
Sbjct: 123 LIVKDGKLTGDVEGEVLKENAKGEILEK 150
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 216 SKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCS-------SFKSR 268
K+E I PT A E I+ RG+ + V+SG I V + +F +R
Sbjct: 66 EKVEKAIKRITPTEGAEETIKELKNRGYV---VAVVSGGFDIAVNKIKEKLGLDYAFANR 122
Query: 269 LTGVDPTLDSDFAKTLSKTCSAGDNAEQ 296
L D L D + K + G+ E+
Sbjct: 123 LIVKDGKLTGDVEGEVLKENAKGEILEK 150
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 216 SKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCS-------SFKSR 268
K+E I PT A E I+ RG+ + V+SG I V + +F +R
Sbjct: 66 EKVEKAIKRITPTEGAEETIKELKNRGYV---VAVVSGGFDIAVNKIKEKLGLDYAFANR 122
Query: 269 LTGVDPTLDSDFAKTLSKTCSAGDNAEQ 296
L D L D + K + G+ E+
Sbjct: 123 LIVKDGKLTGDVEGEVLKENAKGEILEK 150
>pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
Length = 211
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 216 SKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCS-------SFKSR 268
K+E I PT A E I+ RG+ + V+SG I V + +F +R
Sbjct: 66 EKVEKAIKRITPTEGAEETIKELKNRGYV---VAVVSGGFDIAVNKIKEKLGLDYAFANR 122
Query: 269 LTGVDPTLDSDFAKTLSKTCSAGDNAEQ 296
L D L D + K + G+ E+
Sbjct: 123 LIVKDGKLTGDVEGEVLKENAKGEILEK 150
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 28/112 (25%)
Query: 199 AGGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIG 258
AGGP GR + + + + P PT +A +++ GF+ E+V L +H+I
Sbjct: 122 AGGPRLQFLAGRSNISQPSPDGLV--PDPTDSADKILARMADIGFSPTEVVHLLASHSIA 179
Query: 259 VARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYF 310
+D+D A + PFD+T + FD +F
Sbjct: 180 AQY-------------EVDTDVAGS-------------PFDSTPSVFDTQFF 205
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 28/102 (27%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCSSFKSR 268
GR D + + + PF + ++ ++ G GF+ E+V L +H+I A
Sbjct: 125 GRPDAVAASPDHLVPEPFDSVDS--ILARMGDAGFSPVEVVWLLASHSIAAA-------- 174
Query: 269 LTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYF 310
VDP++ PFD+T FD+ +F
Sbjct: 175 -AKVDPSIPG-----------------TPFDSTPGVFDSQFF 198
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 28/102 (27%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCSSFKSR 268
GR D + + + PF + ++ ++ G GF+ E+V L +H+I A
Sbjct: 125 GRPDAVAASPDHLVPEPFDSVDS--ILARMGDAGFSPVEVVYLLASHSIAAAD------- 175
Query: 269 LTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYF 310
VDP++ PFD+T FD+ +F
Sbjct: 176 --KVDPSIPG-----------------TPFDSTPGVFDSQFF 198
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 28/102 (27%)
Query: 209 GRKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCSSFKSR 268
GR D + + + PF + ++ ++ G GF+ E+V L +H+I A
Sbjct: 125 GRPDAVAASPDHLVPEPFDSVDS--ILARMGDAGFSPVEVVSLLASHSIAAAD------- 175
Query: 269 LTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYF 310
VDP++ PFD+T FD+ +F
Sbjct: 176 --KVDPSIPG-----------------TPFDSTPGVFDSQFF 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,623,580
Number of Sequences: 62578
Number of extensions: 338577
Number of successful extensions: 1013
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 139
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)