Query 017040
Match_columns 378
No_of_seqs 217 out of 1525
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 5E-104 1E-108 775.3 25.5 294 82-378 17-324 (324)
2 cd00693 secretory_peroxidase H 100.0 2.4E-97 5E-102 724.8 25.1 289 89-377 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 4E-71 8.6E-76 522.8 11.2 226 106-342 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 2E-68 4.4E-73 517.2 21.9 230 104-374 15-256 (289)
5 cd00691 ascorbate_peroxidase A 100.0 1.2E-65 2.7E-70 491.4 20.3 229 101-364 11-252 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 2.4E-64 5.3E-69 481.4 20.0 230 93-363 4-248 (250)
7 cd00692 ligninase Ligninase an 100.0 5.2E-64 1.1E-68 494.0 21.9 238 98-378 14-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 3.5E-62 7.5E-67 466.2 20.3 219 104-363 18-248 (251)
9 cd00314 plant_peroxidase_like 100.0 6E-59 1.3E-63 444.4 19.2 222 105-359 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 6.1E-56 1.3E-60 444.0 19.3 269 89-368 28-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 1.7E-53 3.6E-58 450.1 19.9 266 89-365 38-405 (716)
12 PRK15061 catalase/hydroperoxid 100.0 4E-50 8.7E-55 422.5 20.0 270 88-368 39-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 2E-49 4.3E-54 379.0 12.2 215 110-359 31-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 9.2E-39 2E-43 309.2 18.3 219 108-361 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.6E-33 3.5E-38 298.6 17.4 220 105-362 429-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 4.4E-33 9.6E-38 293.9 18.1 220 108-362 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 9E-31 2E-35 266.0 16.8 248 104-361 70-416 (730)
18 COG0376 KatG Catalase (peroxid 99.3 2.1E-11 4.5E-16 125.6 12.9 215 108-361 452-725 (730)
19 PTZ00411 transaldolase-like pr 66.0 43 0.00094 34.0 9.6 128 199-351 180-327 (333)
20 PRK12309 transaldolase/EF-hand 54.3 1E+02 0.0023 32.0 10.1 75 182-256 155-245 (391)
21 PRK12346 transaldolase A; Prov 50.9 88 0.0019 31.6 8.7 142 182-350 150-312 (316)
22 TIGR00874 talAB transaldolase. 49.3 1.1E+02 0.0025 30.9 9.2 126 198-349 167-312 (317)
23 PF11895 DUF3415: Domain of un 48.6 15 0.00033 29.9 2.4 19 345-363 2-20 (80)
24 PRK05269 transaldolase B; Prov 44.1 1.1E+02 0.0025 30.8 8.4 127 199-350 170-313 (318)
25 cd00957 Transaldolase_TalAB Tr 44.1 1E+02 0.0023 31.0 8.1 74 182-255 149-238 (313)
26 TIGR03068 srtB_sig_NPQTN sorta 40.9 41 0.00088 22.9 3.1 12 32-43 5-16 (33)
27 PLN02161 beta-amylase 26.5 70 0.0015 34.5 3.7 34 335-372 234-272 (531)
28 KOG0400 40S ribosomal protein 24.1 51 0.0011 29.4 1.9 34 229-262 31-65 (151)
29 PRK06580 putative monovalent c 22.5 1E+02 0.0022 26.2 3.3 26 35-60 7-32 (103)
30 COG3763 Uncharacterized protei 22.2 4.1E+02 0.0088 21.3 6.3 28 105-132 24-51 (71)
31 PF01446 Rep_1: Replication pr 21.9 37 0.0008 32.7 0.6 16 23-38 79-94 (233)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=5.2e-104 Score=775.32 Aligned_cols=294 Identities=43% Similarity=0.739 Sum_probs=279.1
Q ss_pred ccCCccCCCCcchhhcCCccHHHHHHHHHHHHHhcCCChhhHHHHHhhcccCccCCCceeeecCCCCCccccCCCCCCCC
Q 017040 82 GFRFGVDGLRMDYYIMTCPFGEQIVKNAVDRALDDDPTLAAALVRMHFHDCFIEGCDGSVLIDSTQDNKAEKDSPGNLSL 161 (378)
Q Consensus 82 ~~~~~~~~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~aa~lLRL~FHDcfv~GCDgSiLLd~t~~~~~E~~~~~N~~L 161 (378)
....++++|+++||++|||++|+||++.|++++.++|+++|++|||+||||||+||||||||+++ ..||++++|.+|
T Consensus 17 ~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~~l 93 (324)
T PLN03030 17 TTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNLLL 93 (324)
T ss_pred cccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCcCc
Confidence 34455578999999999999999999999999999999999999999999999999999999965 379999999999
Q ss_pred chhhhHHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCccccCCCCCCCccHHHHHHHHHhC
Q 017040 162 RGYEVIDDAKNQLEEQCPGVVSCADIIAMAARDAIFWAGGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR 241 (378)
Q Consensus 162 rg~~vId~iK~~le~~CP~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~~~LP~p~~~~~~l~~~F~~~ 241 (378)
+|||+||.||+++|++||++|||||||||||||||+++|||.|+|++||||+++|.+.++.+||.|+.+++++++.|++|
T Consensus 94 ~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~ 173 (324)
T PLN03030 94 RGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAK 173 (324)
T ss_pred chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999987766678999999999999999999
Q ss_pred CCChhhhhhhhccccccccccccCCCCCCC-------CCCCCCHHHHHHhcccCCC-CC--CCCCCCCCCCCccccHHHH
Q 017040 242 GFTAQEMVVLSGAHTIGVARCSSFKSRLTG-------VDPTLDSDFAKTLSKTCSA-GD--NAEQPFDATRNDFDNLYFN 311 (378)
Q Consensus 242 Gls~~elVaLsGAHTiG~ahc~~f~~Rl~~-------~Dp~ld~~f~~~L~~~Cp~-g~--~~~~lD~~TP~~FDN~Yyk 311 (378)
|||.+|||+||||||||++||.+|.+|||+ +||+||+.|++.||+.||. ++ +.+++|+.||.+|||+||+
T Consensus 174 Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~ 253 (324)
T PLN03030 174 GLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFS 253 (324)
T ss_pred CCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHH
Confidence 999999999999999999999999999992 5999999999999999994 22 4678999999999999999
Q ss_pred HHhhccccccchhhhhcChhhHHHHHHhhhCh----HHHHHHHHHHHHHhhcCCccCCCCCccccccccCC
Q 017040 312 ALIRKAGVLFSDQTLLTNAKTRAAVNGYAMNQ----AMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378 (378)
Q Consensus 312 nl~~~~glL~SD~~L~~d~~T~~~V~~yA~d~----~~Ff~~Fa~AmvKM~~lgvltG~~GEIR~~C~~vN 378 (378)
||+.++|+|+|||+|++|++|+++|++||.|+ +.||++|++||+|||+|+|+||.+|||||+|+++|
T Consensus 254 nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 254 NLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 99999999999999999999999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.4e-97 Score=724.81 Aligned_cols=289 Identities=55% Similarity=0.929 Sum_probs=278.6
Q ss_pred CCCcchhhcCCccHHHHHHHHHHHHHhcCCChhhHHHHHhhcccCccCCCceeeecCCCCCccccCCCCCCCCchhhhHH
Q 017040 89 GLRMDYYIMTCPFGEQIVKNAVDRALDDDPTLAAALVRMHFHDCFIEGCDGSVLIDSTQDNKAEKDSPGNLSLRGYEVID 168 (378)
Q Consensus 89 ~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~aa~lLRL~FHDcfv~GCDgSiLLd~t~~~~~E~~~~~N~~Lrg~~vId 168 (378)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||++++++.+|+++++|.+|+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 69999999999999999999999999999999999999999999999999999999987778999999999999999999
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCccccCCCCCCCccHHHHHHHHHhCCCChhhh
Q 017040 169 DAKNQLEEQCPGVVSCADIIAMAARDAIFWAGGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEM 248 (378)
Q Consensus 169 ~iK~~le~~CP~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gls~~el 248 (378)
+||+++|++||++||||||||||||+||+++|||.|+|++||+|+.++.+.+++.||+|+.+++++++.|+++||+++||
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d~ 160 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTDL 160 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHHh
Confidence 99999999999999999999999999999999999999999999998876555789999999999999999999999999
Q ss_pred hhhhccccccccccccCCCCCC------CCCCCCCHHHHHHhcccCCCC---CCCCCCCCCCCCccccHHHHHHhhcccc
Q 017040 249 VVLSGAHTIGVARCSSFKSRLT------GVDPTLDSDFAKTLSKTCSAG---DNAEQPFDATRNDFDNLYFNALIRKAGV 319 (378)
Q Consensus 249 VaLsGAHTiG~ahc~~f~~Rl~------~~Dp~ld~~f~~~L~~~Cp~g---~~~~~lD~~TP~~FDN~Yyknl~~~~gl 319 (378)
|+|+||||||++||.+|.+|+| ++||+||+.|+..|++.||.+ ++.+++|+.||.+|||+||+|++.++|+
T Consensus 161 VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~gl 240 (298)
T cd00693 161 VALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRGL 240 (298)
T ss_pred eeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcccC
Confidence 9999999999999999999998 369999999999999999953 2678899999999999999999999999
Q ss_pred ccchhhhhcChhhHHHHHHhhhChHHHHHHHHHHHHHhhcCCccCCCCCccccccccC
Q 017040 320 LFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKI 377 (378)
Q Consensus 320 L~SD~~L~~d~~T~~~V~~yA~d~~~Ff~~Fa~AmvKM~~lgvltG~~GEIR~~C~~v 377 (378)
|+|||+|+.|++|+++|++||.||+.|+++|++||+||++++|+||.+||||++|+++
T Consensus 241 L~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 241 LTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred ccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=4e-71 Score=522.82 Aligned_cols=226 Identities=51% Similarity=0.849 Sum_probs=207.5
Q ss_pred HHHHHHHHHhcCCChhhHHHHHhhcccCc-cCCCceeeecCCCCCccccCCCCCCCCc-hhhhHHHHHHHHHhhCCCCCc
Q 017040 106 VKNAVDRALDDDPTLAAALVRMHFHDCFI-EGCDGSVLIDSTQDNKAEKDSPGNLSLR-GYEVIDDAKNQLEEQCPGVVS 183 (378)
Q Consensus 106 Vr~~v~~~~~~~~~~aa~lLRL~FHDcfv-~GCDgSiLLd~t~~~~~E~~~~~N~~Lr-g~~vId~iK~~le~~CP~~VS 183 (378)
||++|++++.++++++|++|||+|||||+ +|||||||+. .+|+++++|.+|+ ++++|+.||+++|++||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 79999999999999999999999999999 9999999983 4799999999999 999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCccccCCCCCCCccHHHHHHHHHhCCCChhhhhhhhccccccccccc
Q 017040 184 CADIIAMAARDAIFWAGGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAHTIGVARCS 263 (378)
Q Consensus 184 cADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gls~~elVaLsGAHTiG~ahc~ 263 (378)
|||||+||||+||+.+|||.|+|++||+|+.+++..++.+||.|+.+++++++.|+++|||++|||||+||||||++||.
T Consensus 76 ~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~ 155 (230)
T PF00141_consen 76 CADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCS 155 (230)
T ss_dssp HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGG
T ss_pred HHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceecccccccceec
Confidence 99999999999999999999999999999999987544569999999999999999999999999999999999999999
Q ss_pred cCCCCCC-CCCCCCCHHHHHHhcccCCCCC-CCCCCCCCCCCccccHHHHHHhhccccccchhhhhcChhhHHHHHHhhh
Q 017040 264 SFKSRLT-GVDPTLDSDFAKTLSKTCSAGD-NAEQPFDATRNDFDNLYFNALIRKAGVLFSDQTLLTNAKTRAAVNGYAM 341 (378)
Q Consensus 264 ~f~~Rl~-~~Dp~ld~~f~~~L~~~Cp~g~-~~~~lD~~TP~~FDN~Yyknl~~~~glL~SD~~L~~d~~T~~~V~~yA~ 341 (378)
+|. |+| .+||+||+.|+.. .|+.++ +.+++| ||.+|||+||+++++++|+|+||++|++|++|+++|++||+
T Consensus 156 ~f~-rl~~~~dp~~d~~~~~~---~C~~~~~~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~V~~yA~ 229 (230)
T PF00141_consen 156 SFS-RLYFPPDPTMDPGYAGQ---NCNSGGDNGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPIVERYAQ 229 (230)
T ss_dssp CTG-GTSCSSGTTSTHHHHHH---SSSTSGCTCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHHHHHHHH
T ss_pred ccc-cccccccccccccccee---ccCCCcccccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHHHHHHhc
Confidence 999 999 6799999999988 895332 566778 99999999999999999999999999999999999999998
Q ss_pred C
Q 017040 342 N 342 (378)
Q Consensus 342 d 342 (378)
|
T Consensus 230 d 230 (230)
T PF00141_consen 230 D 230 (230)
T ss_dssp T
T ss_pred C
Confidence 6
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=2e-68 Score=517.16 Aligned_cols=230 Identities=29% Similarity=0.452 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHhhcccC-------ccCCCceeeecCCCCCccccCCCCCCCCc-hhhhHHHHHHHHH
Q 017040 104 QIVKNAVDRALDDDPTLAAALVRMHFHDCF-------IEGCDGSVLIDSTQDNKAEKDSPGNLSLR-GYEVIDDAKNQLE 175 (378)
Q Consensus 104 ~iVr~~v~~~~~~~~~~aa~lLRL~FHDcf-------v~GCDgSiLLd~t~~~~~E~~~~~N~~Lr-g~~vId~iK~~le 175 (378)
+.+++++ .++.++|.++|.+|||+||||| ++||||||+++ +|+++++|.||+ |+++|++||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~- 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH- 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc-
Confidence 3566777 4477899999999999999999 99999999984 699999999995 899999999987
Q ss_pred hhCCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCccccCCCCCCCccHHHHHHHHHhCCCChhhhhhhhccc
Q 017040 176 EQCPGVVSCADIIAMAARDAIFWAGGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAH 255 (378)
Q Consensus 176 ~~CP~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gls~~elVaLsGAH 255 (378)
| +|||||||+||||+||+.+|||.|+|++||+|+++++.. ++||+|+.+++++++.|+++|||++|||+|+|||
T Consensus 87 ---~-~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAH 160 (289)
T PLN02608 87 ---P-KITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEE--GRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGH 160 (289)
T ss_pred ---C-CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCcc--CCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccc
Confidence 4 899999999999999999999999999999999988532 6899999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCHHHHHHhcccCCCCCCCCCCCCCCCCccccHHHHHHhhc--ccc--ccchhhhhcChh
Q 017040 256 TIGVARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRK--AGV--LFSDQTLLTNAK 331 (378)
Q Consensus 256 TiG~ahc~~f~~Rl~~~Dp~ld~~f~~~L~~~Cp~g~~~~~lD~~TP~~FDN~Yyknl~~~--~gl--L~SD~~L~~d~~ 331 (378)
|||++||. |+ + | .+ .+..||.+|||+||+|++.+ +|+ |+|||+|++|++
T Consensus 161 TiG~ahc~----r~-g--------~---------~g-----~~~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~ 213 (289)
T PLN02608 161 TLGRAHPE----RS-G--------F---------DG-----PWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPE 213 (289)
T ss_pred cccccccc----CC-C--------C---------CC-----CCCCCCCccChHHHHHHHcCCcCCccccccCHhhhcChh
Confidence 99999995 43 0 0 00 12379999999999999999 788 799999999999
Q ss_pred hHHHHHHhhhChHHHHHHHHHHHHHhhcCCccCCCCCcccccc
Q 017040 332 TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNC 374 (378)
Q Consensus 332 T~~~V~~yA~d~~~Ff~~Fa~AmvKM~~lgvltG~~GEIR~~C 374 (378)
|+++|++||.||+.|+++|++||+||++|+|+||++||+.+.-
T Consensus 214 T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~ 256 (289)
T PLN02608 214 FRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKST 256 (289)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccC
Confidence 9999999999999999999999999999999999999998754
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.2e-65 Score=491.43 Aligned_cols=229 Identities=30% Similarity=0.394 Sum_probs=206.8
Q ss_pred cHHHHHHHHHHHHHhcCCChhhHHHHHhhcccCccCCCceeeecCC---CCCccccCCCCCCCC-chhhhHHHHHHHHHh
Q 017040 101 FGEQIVKNAVDRALDDDPTLAAALVRMHFHDCFIEGCDGSVLIDST---QDNKAEKDSPGNLSL-RGYEVIDDAKNQLEE 176 (378)
Q Consensus 101 ~~e~iVr~~v~~~~~~~~~~aa~lLRL~FHDcfv~GCDgSiLLd~t---~~~~~E~~~~~N~~L-rg~~vId~iK~~le~ 176 (378)
..+++|++.|++.+. +++++|++|||+||||| +||+|+++++. ..+.+|+++++|.+| +||++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~--~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSG--TYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHh--ccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 357799999999999 99999999999999999 48888877543 233579999999999 7999999999886
Q ss_pred hCCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCcccc-CCCCCCCccHHHHHHHHHhCCCChhhhhhhhccc
Q 017040 177 QCPGVVSCADIIAMAARDAIFWAGGPIYDIPKGRKDGRRSKIEDT-INLPFPTFNASELIRAFGQRGFTAQEMVVLSGAH 255 (378)
Q Consensus 177 ~CP~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~-~~LP~p~~~~~~l~~~F~~~Gls~~elVaLsGAH 255 (378)
| +||||||||||||+||+.+|||.|+|++||+|+.++....+ .+||.|+.+++++++.|+++|||++|||+|+|||
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 5 79999999999999999999999999999999999987666 7899999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCHHHHHHhcccCCCCCCCCCCCCCCCCccccHHHHHHhhccc--------cccchhhhh
Q 017040 256 TIGVARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG--------VLFSDQTLL 327 (378)
Q Consensus 256 TiG~ahc~~f~~Rl~~~Dp~ld~~f~~~L~~~Cp~g~~~~~lD~~TP~~FDN~Yyknl~~~~g--------lL~SD~~L~ 327 (378)
|||++||..+ . + .+ -|..||.+|||+||+||+.++| +|+||++|+
T Consensus 163 TiG~a~c~~~--~-~-------------------~g-----~~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~ 215 (253)
T cd00691 163 TLGRCHKERS--G-Y-------------------DG-----PWTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALL 215 (253)
T ss_pred eeecccccCC--C-C-------------------CC-----CCCCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHH
Confidence 9999999531 0 0 01 1236999999999999999999 999999999
Q ss_pred cChhhHHHHHHhhhChHHHHHHHHHHHHHhhcCCccC
Q 017040 328 TNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKE 364 (378)
Q Consensus 328 ~d~~T~~~V~~yA~d~~~Ff~~Fa~AmvKM~~lgvlt 364 (378)
.|++|+++|++||+|++.|+++|++||+||++++|..
T Consensus 216 ~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 216 EDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred cCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999863
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=2.4e-64 Score=481.35 Aligned_cols=230 Identities=28% Similarity=0.448 Sum_probs=205.7
Q ss_pred chhhcC--CccHHHHHHHHHHHHHhcCCChhhHHHHHhhc-----ccCcc--CCCceeeecCCCCCccccCCCCCCCC-c
Q 017040 93 DYYIMT--CPFGEQIVKNAVDRALDDDPTLAAALVRMHFH-----DCFIE--GCDGSVLIDSTQDNKAEKDSPGNLSL-R 162 (378)
Q Consensus 93 ~fY~~s--CP~~e~iVr~~v~~~~~~~~~~aa~lLRL~FH-----Dcfv~--GCDgSiLLd~t~~~~~E~~~~~N~~L-r 162 (378)
+||... |+.+++.+++.+++.+ .+++++|.+|||+|| ||+++ ||||||.. .+|+++++|.+| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~~ 76 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIHI 76 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHHH
Confidence 455533 8889999999999988 789999999999999 88876 99999944 379999999999 7
Q ss_pred hhhhHHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCccccCCCCCCCccHHHHHHHHHh-C
Q 017040 163 GYEVIDDAKNQLEEQCPGVVSCADIIAMAARDAIFWAGGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQ-R 241 (378)
Q Consensus 163 g~~vId~iK~~le~~CP~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~~~LP~p~~~~~~l~~~F~~-~ 241 (378)
||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|+++++.. ++||.|+.+++++++.|++ +
T Consensus 77 ~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--~~lP~p~~~~~~l~~~F~~~~ 149 (250)
T PLN02364 77 ALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPE--GRLPDATKGCDHLRDVFAKQM 149 (250)
T ss_pred HHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccccc--CCCCCCCcCHHHHHHHHHHhc
Confidence 999999999997 4899999999999999999999999999999999988642 6799999999999999997 5
Q ss_pred CCChhhhhhhhccccccccccccCCCCCCCCCCCCCHHHHHHhcccCCCCCCCCCCCCCCCCccccHHHHHHhhc--ccc
Q 017040 242 GFTAQEMVVLSGAHTIGVARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRK--AGV 319 (378)
Q Consensus 242 Gls~~elVaLsGAHTiG~ahc~~f~~Rl~~~Dp~ld~~f~~~L~~~Cp~g~~~~~lD~~TP~~FDN~Yyknl~~~--~gl 319 (378)
|||++|||+|+||||||++||. |+. | . + .++.||.+|||+||++|+.+ +|+
T Consensus 150 Gl~~~d~VaLsGaHTiG~~hc~----r~~---------~--------~-g-----~~~~tp~~fDn~Yy~~ll~~~~~gl 202 (250)
T PLN02364 150 GLSDKDIVALSGAHTLGRCHKD----RSG---------F--------E-G-----AWTSNPLIFDNSYFKELLSGEKEGL 202 (250)
T ss_pred CCCHHHheeeecceeeccccCC----CCC---------C--------C-C-----CCCCCCCccchHHHHHHhcCCcCCC
Confidence 9999999999999999999993 431 0 0 0 01379999999999999999 898
Q ss_pred cc--chhhhhcChhhHHHHHHhhhChHHHHHHHHHHHHHhhcCCcc
Q 017040 320 LF--SDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVK 363 (378)
Q Consensus 320 L~--SD~~L~~d~~T~~~V~~yA~d~~~Ff~~Fa~AmvKM~~lgvl 363 (378)
|. |||+|+.|++|+.+|++||.||+.|+++|++||+||++|++-
T Consensus 203 l~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 203 LQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred ccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 75 999999999999999999999999999999999999999974
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=5.2e-64 Score=494.03 Aligned_cols=238 Identities=24% Similarity=0.366 Sum_probs=214.0
Q ss_pred CCccHHHHHHHHHHHHHhcCC---ChhhHHHHHhhcccCc------------cCCCceeeecCCCCCccccCCCCCCCCc
Q 017040 98 TCPFGEQIVKNAVDRALDDDP---TLAAALVRMHFHDCFI------------EGCDGSVLIDSTQDNKAEKDSPGNLSLR 162 (378)
Q Consensus 98 sCP~~e~iVr~~v~~~~~~~~---~~aa~lLRL~FHDcfv------------~GCDgSiLLd~t~~~~~E~~~~~N~~Lr 162 (378)
.| +|..|++++++.+..+. ..++.+|||+||||++ +|||||||++.+ .|+++++|.||+
T Consensus 14 cc--~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL~ 87 (328)
T cd00692 14 CC--VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGLD 87 (328)
T ss_pred hc--chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCHH
Confidence 45 79999999999998654 4667799999999996 899999999853 699999999998
Q ss_pred hhhhHHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhh-cCCCccccCCCCCCCCCCCccccCCCCCCCccHHHHHHHHHhC
Q 017040 163 GYEVIDDAKNQLEEQCPGVVSCADIIAMAARDAIFW-AGGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQR 241 (378)
Q Consensus 163 g~~vId~iK~~le~~CP~~VScADilalAardAV~~-~GGP~~~v~~GR~D~~~s~~~~~~~LP~p~~~~~~l~~~F~~~ 241 (378)
++|+.+|..+|+.| ||||||||||||+||+. +|||.|+|++||+|++++.+. ++||.|+.+++++++.|+++
T Consensus 88 --~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~--g~LP~p~~sv~~l~~~F~~~ 160 (328)
T cd00692 88 --EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPD--GLVPEPFDSVDKILARFADA 160 (328)
T ss_pred --HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcc--cCCCCCCCCHHHHHHHHHHc
Confidence 89999999999998 99999999999999994 699999999999999988533 68999999999999999999
Q ss_pred CCChhhhhhhhccccccccccccCCCCCCCCCCCCCHHHHHHhcccCCCCCCCCCCCCCCCCccccHHHHHHh-hccc--
Q 017040 242 GFTAQEMVVLSGAHTIGVARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALI-RKAG-- 318 (378)
Q Consensus 242 Gls~~elVaLsGAHTiG~ahc~~f~~Rl~~~Dp~ld~~f~~~L~~~Cp~g~~~~~lD~~TP~~FDN~Yyknl~-~~~g-- 318 (378)
|||++|||+|+||||||++|. .||+++ ..++| .||.+|||+||+|++ .+++
T Consensus 161 Gf~~~E~VaLsGAHTiG~a~~---------~Dps~~----------------g~p~D-~TP~~FDn~Yf~~ll~~~~~~~ 214 (328)
T cd00692 161 GFSPDELVALLAAHSVAAQDF---------VDPSIA----------------GTPFD-STPGVFDTQFFIETLLKGTAFP 214 (328)
T ss_pred CCCHHHHhhhcccccccccCC---------CCCCCC----------------CCCCC-CCcchhcHHHHHHHHHcCCCCC
Confidence 999999999999999999982 477775 13567 699999999999987 4555
Q ss_pred -----------------cccchhhhhcChhhHHHHHHhhhChHHHHHHHHHHHHHhhcCCccCCCCCccccccccCC
Q 017040 319 -----------------VLFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVKEGGKGEVRHNCRKIN 378 (378)
Q Consensus 319 -----------------lL~SD~~L~~d~~T~~~V~~yA~d~~~Ff~~Fa~AmvKM~~lgvltG~~GEIR~~C~~vN 378 (378)
+|+||++|+.|++|+.+|++||+||++|+++|++||+||++|||. +..+.+|+.|+
T Consensus 215 g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~ 287 (328)
T cd00692 215 GSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSDVI 287 (328)
T ss_pred CccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcccC
Confidence 499999999999999999999999999999999999999999986 33788999875
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=3.5e-62 Score=466.22 Aligned_cols=219 Identities=27% Similarity=0.405 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHhhcccC-------ccCCCceeeecCCCCCccccCCCCCCCCc-hhhhHHHHHHHHH
Q 017040 104 QIVKNAVDRALDDDPTLAAALVRMHFHDCF-------IEGCDGSVLIDSTQDNKAEKDSPGNLSLR-GYEVIDDAKNQLE 175 (378)
Q Consensus 104 ~iVr~~v~~~~~~~~~~aa~lLRL~FHDcf-------v~GCDgSiLLd~t~~~~~E~~~~~N~~Lr-g~~vId~iK~~le 175 (378)
+-+++++.+.+ ++...+|.+|||+||||. .|||||||.+. .|+++++|.||+ ++++|++||+++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~- 89 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF- 89 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc-
Confidence 45577777776 457899999999999995 48999999863 699999999999 899999999997
Q ss_pred hhCCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCccccCCCCCCCccHHHHHHHHHhCCCChhhhhhhhccc
Q 017040 176 EQCPGVVSCADIIAMAARDAIFWAGGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSGAH 255 (378)
Q Consensus 176 ~~CP~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gls~~elVaLsGAH 255 (378)
++|||||||+||||+||+.+|||.|+|++||+|+.++.+. ++||.|+.+++++++.|+++|||++|||||+|||
T Consensus 90 ----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~--~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaH 163 (251)
T PLN02879 90 ----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPE--GRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGH 163 (251)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcc--cCCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccc
Confidence 4799999999999999999999999999999999987532 7899999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCHHHHHHhcccCCCCCCCCCCCCCCCCccccHHHHHHhhc--ccc--ccchhhhhcChh
Q 017040 256 TIGVARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRK--AGV--LFSDQTLLTNAK 331 (378)
Q Consensus 256 TiG~ahc~~f~~Rl~~~Dp~ld~~f~~~L~~~Cp~g~~~~~lD~~TP~~FDN~Yyknl~~~--~gl--L~SD~~L~~d~~ 331 (378)
|||++||. |. +| .| . ++.||.+|||+||++|+.+ +|+ |+||++|+.|++
T Consensus 164 TiG~ah~~----r~---------g~---------~g----~-~d~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~ 216 (251)
T PLN02879 164 TLGRCHKE----RS---------GF---------EG----A-WTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPL 216 (251)
T ss_pred cccccccc----cc---------cC---------CC----C-CCCCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCc
Confidence 99999995 31 00 01 1 2369999999999999999 898 679999999999
Q ss_pred hHHHHHHhhhChHHHHHHHHHHHHHhhcCCcc
Q 017040 332 TRAAVNGYAMNQAMFFLDFQQAMVKMGMVDVK 363 (378)
Q Consensus 332 T~~~V~~yA~d~~~Ff~~Fa~AmvKM~~lgvl 363 (378)
|+++|++||+||+.||++|++||+||++||+.
T Consensus 217 t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 217 FLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=6e-59 Score=444.35 Aligned_cols=222 Identities=35% Similarity=0.504 Sum_probs=205.8
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHhhcccCcc--------CCCceeeecCCCCCccccCCCCCCCC-chhhhHHHHHHHHH
Q 017040 105 IVKNAVDRALDDDPTLAAALVRMHFHDCFIE--------GCDGSVLIDSTQDNKAEKDSPGNLSL-RGYEVIDDAKNQLE 175 (378)
Q Consensus 105 iVr~~v~~~~~~~~~~aa~lLRL~FHDcfv~--------GCDgSiLLd~t~~~~~E~~~~~N~~L-rg~~vId~iK~~le 175 (378)
.|++.|++.+.+++.+++++|||+||||++. ||||||+++ +|+++++|.+| +++++|+.||+++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccHHHHHHHHHHHHHHcC
Confidence 5889999999999999999999999999986 999999997 39999999996 79999999999999
Q ss_pred hhCCCCCcHHHHHHHhhhhhhhhc--CCCccccCCCCCCCCCCC--cccc-CCCCCCCccHHHHHHHHHhCCCChhhhhh
Q 017040 176 EQCPGVVSCADIIAMAARDAIFWA--GGPIYDIPKGRKDGRRSK--IEDT-INLPFPTFNASELIRAFGQRGFTAQEMVV 250 (378)
Q Consensus 176 ~~CP~~VScADilalAardAV~~~--GGP~~~v~~GR~D~~~s~--~~~~-~~LP~p~~~~~~l~~~F~~~Gls~~elVa 250 (378)
+ |++|||||||++|+++||+.+ |||.|+|++||+|+..+. ...+ ..+|.|..+++++++.|+++|||++||||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VA 153 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVA 153 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHh
Confidence 8 899999999999999999999 999999999999999764 2234 77899999999999999999999999999
Q ss_pred hh-ccccc-cccccccCCCCCCCCCCCCCHHHHHHhcccCCCCCCCCCCCCCCCCccccHHHHHHhhcc-----------
Q 017040 251 LS-GAHTI-GVARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKA----------- 317 (378)
Q Consensus 251 Ls-GAHTi-G~ahc~~f~~Rl~~~Dp~ld~~f~~~L~~~Cp~g~~~~~lD~~TP~~FDN~Yyknl~~~~----------- 317 (378)
|+ ||||+ |++||..|..|+ |+ +|+.||.+|||+||++++.++
T Consensus 154 L~~GaHti~G~~~~~~~~~~~------------------~~-------~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~ 208 (255)
T cd00314 154 LSAGAHTLGGKNHGDLLNYEG------------------SG-------LWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPD 208 (255)
T ss_pred hccCCeeccCcccCCCCCccc------------------CC-------CCCCCCCccchHHHHHHhcCCcccccCCccCC
Confidence 99 99999 999999886663 22 467899999999999999988
Q ss_pred -----ccccchhhhhcChhhHHHHHHhhhChHHHHHHHHHHHHHhhc
Q 017040 318 -----GVLFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGM 359 (378)
Q Consensus 318 -----glL~SD~~L~~d~~T~~~V~~yA~d~~~Ff~~Fa~AmvKM~~ 359 (378)
++|+||++|+.|++|+.+|++||.|++.|+++|++||+||++
T Consensus 209 ~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 209 GVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=6.1e-56 Score=444.04 Aligned_cols=269 Identities=20% Similarity=0.261 Sum_probs=234.3
Q ss_pred CCCcch-hhcCCccHH-HHHHHHHHHHHhcC--------CChhhHHHHHhhcccCc-------cCCC-ceeeecCCCCCc
Q 017040 89 GLRMDY-YIMTCPFGE-QIVKNAVDRALDDD--------PTLAAALVRMHFHDCFI-------EGCD-GSVLIDSTQDNK 150 (378)
Q Consensus 89 ~L~~~f-Y~~sCP~~e-~iVr~~v~~~~~~~--------~~~aa~lLRL~FHDcfv-------~GCD-gSiLLd~t~~~~ 150 (378)
.+..+| |.+.+-+.. +.|++++++.+... ...+|.+|||+|||+.+ ||++ |+|.+.
T Consensus 28 p~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------ 101 (409)
T cd00649 28 PMGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------ 101 (409)
T ss_pred CCCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------
Confidence 455555 565554443 68999999999865 37999999999999974 8997 788775
Q ss_pred cccCCCCCCCCc-hhhhHHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCc-----------
Q 017040 151 AEKDSPGNLSLR-GYEVIDDAKNQLEEQCPGVVSCADIIAMAARDAIFWAGGPIYDIPKGRKDGRRSKI----------- 218 (378)
Q Consensus 151 ~E~~~~~N~~Lr-g~~vId~iK~~le~~CP~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~----------- 218 (378)
+|++++.|.+|. ..++++.||+++ |..||+||+|+||+..|||.+|||.|++..||.|...+..
T Consensus 102 pe~~~~~N~gL~~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~ 177 (409)
T cd00649 102 PLNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWL 177 (409)
T ss_pred cccCcHhhhhHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcc
Confidence 799999999997 688999999887 5569999999999999999999999999999999975432
Q ss_pred ---------------------------cccCCCCCCCccHHHHHHHHHhCCCChhhhhhh-hccccccccccccCCCCCC
Q 017040 219 ---------------------------EDTINLPFPTFNASELIRAFGQRGFTAQEMVVL-SGAHTIGVARCSSFKSRLT 270 (378)
Q Consensus 219 ---------------------------~~~~~LP~p~~~~~~l~~~F~~~Gls~~elVaL-sGAHTiG~ahc~~f~~Rl~ 270 (378)
+.+..||+|..++.+|++.|++||||++||||| +||||||++||.+|.+|+
T Consensus 178 ~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rl- 256 (409)
T cd00649 178 ADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHV- 256 (409)
T ss_pred cccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccC-
Confidence 111379999999999999999999999999999 599999999999999999
Q ss_pred CCCCCCCHHHHHHhc--ccCCCCC----CCCCCC---CCCCCccccHHHHHHhh--------------------------
Q 017040 271 GVDPTLDSDFAKTLS--KTCSAGD----NAEQPF---DATRNDFDNLYFNALIR-------------------------- 315 (378)
Q Consensus 271 ~~Dp~ld~~f~~~L~--~~Cp~g~----~~~~lD---~~TP~~FDN~Yyknl~~-------------------------- 315 (378)
++||++++.|++.|+ +.||.+. ....+| +.||++|||+||++|++
T Consensus 257 g~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~ 336 (409)
T cd00649 257 GPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTV 336 (409)
T ss_pred CCCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccC
Confidence 489999999999995 8999632 234566 68999999999999998
Q ss_pred ----------ccccccchhhhhcChhhHHHHHHhhhChHHHHHHHHHHHHHh--hcCCccCCCCC
Q 017040 316 ----------KAGVLFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM--GMVDVKEGGKG 368 (378)
Q Consensus 316 ----------~~glL~SD~~L~~d~~T~~~V~~yA~d~~~Ff~~Fa~AmvKM--~~lgvltG~~G 368 (378)
++|||+||++|+.|++|+++|++||+|++.||++|++||+|| +++|+++-..|
T Consensus 337 ~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 337 PDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred CCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 569999999999999999999999999999999999999999 69999986655
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.7e-53 Score=450.11 Aligned_cols=266 Identities=21% Similarity=0.251 Sum_probs=229.4
Q ss_pred CCCcch-hhcCCccH-HHHHHHHHHHHHhcC--------CChhhHHHHHhhcccCc-------cCCC-ceeeecCCCCCc
Q 017040 89 GLRMDY-YIMTCPFG-EQIVKNAVDRALDDD--------PTLAAALVRMHFHDCFI-------EGCD-GSVLIDSTQDNK 150 (378)
Q Consensus 89 ~L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~~--------~~~aa~lLRL~FHDcfv-------~GCD-gSiLLd~t~~~~ 150 (378)
.+..+| |.+.+-+. .+.|++++++.+... ...+|-+|||+||++.+ |||+ |+|.+.
T Consensus 38 p~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------ 111 (716)
T TIGR00198 38 PMGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------ 111 (716)
T ss_pred CCCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------
Confidence 455666 66666554 357999999999875 36999999999999975 7884 778765
Q ss_pred cccCCCCCCCCc-hhhhHHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCC------------
Q 017040 151 AEKDSPGNLSLR-GYEVIDDAKNQLEEQCPGVVSCADIIAMAARDAIFWAGGPIYDIPKGRKDGRRSK------------ 217 (378)
Q Consensus 151 ~E~~~~~N~~Lr-g~~vId~iK~~le~~CP~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~------------ 217 (378)
+|++++.|.+|. .+.+++.||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 112 P~~sw~~N~~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l 187 (716)
T TIGR00198 112 PLNSWPDNVNLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWL 187 (716)
T ss_pred cccCchhhhhHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchh
Confidence 799999999996 57888888865 8999999999999999999999999999999999994321
Q ss_pred -------------------------ccccCCCCCCCccHHHHHHHHHhCCCChhhhhhhh-ccccccccccccCCCCCCC
Q 017040 218 -------------------------IEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLS-GAHTIGVARCSSFKSRLTG 271 (378)
Q Consensus 218 -------------------------~~~~~~LP~p~~~~~~l~~~F~~~Gls~~elVaLs-GAHTiG~ahc~~f~~Rl~~ 271 (378)
+..+..+|.|..++.+|++.|++||||++|||||+ ||||||++||.+|.+|+ +
T Consensus 188 ~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-g 266 (716)
T TIGR00198 188 TSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-G 266 (716)
T ss_pred hccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-C
Confidence 01124699999999999999999999999999996 99999999999999998 6
Q ss_pred CCCCCCHHHHHHhcccCCC--C--C--CCCCCC---CCCCCccccHHHHHHhhc--------------------------
Q 017040 272 VDPTLDSDFAKTLSKTCSA--G--D--NAEQPF---DATRNDFDNLYFNALIRK-------------------------- 316 (378)
Q Consensus 272 ~Dp~ld~~f~~~L~~~Cp~--g--~--~~~~lD---~~TP~~FDN~Yyknl~~~-------------------------- 316 (378)
+||++++.|++.|+..||. | + ....+| +.||.+|||+||+||+.+
T Consensus 267 ~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~ 346 (716)
T TIGR00198 267 PDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDV 346 (716)
T ss_pred CCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccc
Confidence 9999999999999999983 2 1 234565 689999999999999974
Q ss_pred --------cccccchhhhhcChhhHHHHHHhhhChHHHHHHHHHHHHHhh--cCCccCC
Q 017040 317 --------AGVLFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKMG--MVDVKEG 365 (378)
Q Consensus 317 --------~glL~SD~~L~~d~~T~~~V~~yA~d~~~Ff~~Fa~AmvKM~--~lgvltG 365 (378)
+++|+||++|..|++|+++|++||+|++.|+++|++||+||+ .+|++.-
T Consensus 347 ~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~ 405 (716)
T TIGR00198 347 EDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSR 405 (716)
T ss_pred cccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhh
Confidence 689999999999999999999999999999999999999998 5666553
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=4e-50 Score=422.54 Aligned_cols=270 Identities=20% Similarity=0.261 Sum_probs=231.4
Q ss_pred CCCCcch-hhcCCccH-HHHHHHHHHHHHhcC--------CChhhHHHHHhhcccCc-------cCCC-ceeeecCCCCC
Q 017040 88 DGLRMDY-YIMTCPFG-EQIVKNAVDRALDDD--------PTLAAALVRMHFHDCFI-------EGCD-GSVLIDSTQDN 149 (378)
Q Consensus 88 ~~L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~~--------~~~aa~lLRL~FHDcfv-------~GCD-gSiLLd~t~~~ 149 (378)
..+..+| |.+-+-.. .+.|++++++.+... ...+|.+|||+||++.+ |||+ |+|.+.
T Consensus 39 ~p~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~----- 113 (726)
T PRK15061 39 NPMGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA----- 113 (726)
T ss_pred CCCCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc-----
Confidence 3466666 66666554 368999999998865 37999999999999975 8996 778664
Q ss_pred ccccCCCCCCCCc-hhhhHHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCc----------
Q 017040 150 KAEKDSPGNLSLR-GYEVIDDAKNQLEEQCPGVVSCADIIAMAARDAIFWAGGPIYDIPKGRKDGRRSKI---------- 218 (378)
Q Consensus 150 ~~E~~~~~N~~Lr-g~~vId~iK~~le~~CP~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---------- 218 (378)
+|++++.|.+|. ...+++.||+++ |..||+||+|+||+..|||.+|||.|++..||.|...+..
T Consensus 114 -pe~~w~~N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~ 188 (726)
T PRK15061 114 -PLNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEW 188 (726)
T ss_pred -ccccchhhhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccc
Confidence 799999999997 688999999887 5579999999999999999999999999999999865432
Q ss_pred -----------------------------cccCCCCCCCccHHHHHHHHHhCCCChhhhhhhh-ccccccccccccCCCC
Q 017040 219 -----------------------------EDTINLPFPTFNASELIRAFGQRGFTAQEMVVLS-GAHTIGVARCSSFKSR 268 (378)
Q Consensus 219 -----------------------------~~~~~LP~p~~~~~~l~~~F~~~Gls~~elVaLs-GAHTiG~ahc~~f~~R 268 (378)
+.+..+|+|..++.+|++.|++||||++|||||+ ||||||++||..|.+|
T Consensus 189 l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~r 268 (726)
T PRK15061 189 LGGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASH 268 (726)
T ss_pred cccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccc
Confidence 1123479999999999999999999999999995 9999999999999999
Q ss_pred CCCCCCCCCHHHHHHhc--ccCCCCC----CCCCCC---CCCCCccccHHHHHHhhc-----------------------
Q 017040 269 LTGVDPTLDSDFAKTLS--KTCSAGD----NAEQPF---DATRNDFDNLYFNALIRK----------------------- 316 (378)
Q Consensus 269 l~~~Dp~ld~~f~~~L~--~~Cp~g~----~~~~lD---~~TP~~FDN~Yyknl~~~----------------------- 316 (378)
+ ++||++++.+++.|. +.||.|. ....+| +.||++|||+||++|+.+
T Consensus 269 l-gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~ 347 (726)
T PRK15061 269 V-GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAED 347 (726)
T ss_pred c-CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccc
Confidence 8 699999999999984 8999642 234466 789999999999999984
Q ss_pred -------------cccccchhhhhcChhhHHHHHHhhhChHHHHHHHHHHHHHh--hcCCccCCCCC
Q 017040 317 -------------AGVLFSDQTLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKM--GMVDVKEGGKG 368 (378)
Q Consensus 317 -------------~glL~SD~~L~~d~~T~~~V~~yA~d~~~Ff~~Fa~AmvKM--~~lgvltG~~G 368 (378)
++||+||++|..||+++++|++||+|+++|+++|++||+|| ..+|+++-.-|
T Consensus 348 ~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 348 TVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred cCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 58999999999999999999999999999999999999999 55776654433
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2e-49 Score=379.00 Aligned_cols=215 Identities=25% Similarity=0.314 Sum_probs=179.2
Q ss_pred HHHHHhcCCChhhHHHHHhhcccC-------ccCCCceeeecCCCCCccccC-CCCCCCCchhhhHHHHHHHHHhhCCCC
Q 017040 110 VDRALDDDPTLAAALVRMHFHDCF-------IEGCDGSVLIDSTQDNKAEKD-SPGNLSLRGYEVIDDAKNQLEEQCPGV 181 (378)
Q Consensus 110 v~~~~~~~~~~aa~lLRL~FHDcf-------v~GCDgSiLLd~t~~~~~E~~-~~~N~~Lrg~~vId~iK~~le~~CP~~ 181 (378)
-..+...++++++++|||+||||| ++||||||+++.. .+|+. .+.|.+|++|+.|+.+ +
T Consensus 31 ~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l~~~~~i~~~----------~ 97 (264)
T cd08201 31 TDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTLNFFVNFYSP----------R 97 (264)
T ss_pred cccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhccccceeeccC----------c
Confidence 344556888999999999999999 8999999999843 36777 5567788888887643 5
Q ss_pred CcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCccccCCCCCCCccHHHHHHHHHhCCCChhhhhhhhc-ccccccc
Q 017040 182 VSCADIIAMAARDAIFWAGGPIYDIPKGRKDGRRSKIEDTINLPFPTFNASELIRAFGQRGFTAQEMVVLSG-AHTIGVA 260 (378)
Q Consensus 182 VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gls~~elVaLsG-AHTiG~a 260 (378)
||||||||||||+||+.+|||.|+|++||+|++++... .||.|+.++++|++.|++||||++|||+||| |||||++
T Consensus 98 VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~---glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~a 174 (264)
T cd08201 98 SSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA---GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGV 174 (264)
T ss_pred cCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc---cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeec
Confidence 99999999999999999999999999999999987643 4999999999999999999999999999995 9999999
Q ss_pred ccccCCCCCCCCCCCCCHHHHHHhcccCCCCCCCCCCCCCCCCccccHHHHHHhhccc----------cccchhhhhcCh
Q 017040 261 RCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIRKAG----------VLFSDQTLLTNA 330 (378)
Q Consensus 261 hc~~f~~Rl~~~Dp~ld~~f~~~L~~~Cp~g~~~~~lD~~TP~~FDN~Yyknl~~~~g----------lL~SD~~L~~d~ 330 (378)
||..|.++. +|... + +...++| .||.+|||+||++++.|.. .+.||..+++..
T Consensus 175 hc~~f~~~~---~~g~~-----------~--~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d 237 (264)
T cd08201 175 HSEDFPEIV---PPGSV-----------P--DTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSD 237 (264)
T ss_pred ccccchhhc---CCccc-----------c--CCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecC
Confidence 999987764 22110 0 0123455 7999999999999998742 468999999865
Q ss_pred hhHHHHHHhhhChHHHHHHHHHHHHHhhc
Q 017040 331 KTRAAVNGYAMNQAMFFLDFQQAMVKMGM 359 (378)
Q Consensus 331 ~T~~~V~~yA~d~~~Ff~~Fa~AmvKM~~ 359 (378)
... .++..| |++.|.+.++..+.||.+
T Consensus 238 ~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 238 GNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred ccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 544 557777 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=9.2e-39 Score=309.22 Aligned_cols=219 Identities=23% Similarity=0.258 Sum_probs=180.5
Q ss_pred HHHHHHHhcCCChhhHHHHHhhcccCc-------cCCCce-eeecCCCCCccccCCCCCCC--Cc-hhhhHHHHHHHHHh
Q 017040 108 NAVDRALDDDPTLAAALVRMHFHDCFI-------EGCDGS-VLIDSTQDNKAEKDSPGNLS--LR-GYEVIDDAKNQLEE 176 (378)
Q Consensus 108 ~~v~~~~~~~~~~aa~lLRL~FHDcfv-------~GCDgS-iLLd~t~~~~~E~~~~~N~~--Lr-g~~vId~iK~~le~ 176 (378)
+.+++.+....-..+.||||+||++.+ |||+|+ |.|. +|++++.|.+ |. .+.+++.||+++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 667777778788999999999999974 899999 6654 7999999998 86 68899999998842
Q ss_pred -hCC-CCCcHHHHHHHhhhhhhhhcCC-----CccccCCCCCCCCCCCcccc---CCCCCCC------------ccHHHH
Q 017040 177 -QCP-GVVSCADIIAMAARDAIFWAGG-----PIYDIPKGRKDGRRSKIEDT---INLPFPT------------FNASEL 234 (378)
Q Consensus 177 -~CP-~~VScADilalAardAV~~~GG-----P~~~v~~GR~D~~~s~~~~~---~~LP~p~------------~~~~~l 234 (378)
.-+ ..||.||+|+||+..|||.+|| |.+++.+||.|...+..... ..+|.+. ...+.|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 112 2699999999999999999999 99999999999987643211 1345332 235789
Q ss_pred HHHHHhCCCChhhhhhhhccc-cccccccccCCCCCCCCCCCCCHHHHHHhcccCCCCCCCCCCCCCCCCccccHHHHHH
Q 017040 235 IRAFGQRGFTAQEMVVLSGAH-TIGVARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNAL 313 (378)
Q Consensus 235 ~~~F~~~Gls~~elVaLsGAH-TiG~ahc~~f~~Rl~~~Dp~ld~~f~~~L~~~Cp~g~~~~~lD~~TP~~FDN~Yyknl 313 (378)
++.|.++|||++|||||+||| ++|+.|..++ ...++.+|.+|||.||+||
T Consensus 171 rd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~-----------------------------~G~wT~~p~~f~N~fF~nL 221 (297)
T cd08200 171 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-----------------------------HGVFTDRPGVLTNDFFVNL 221 (297)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCCC-----------------------------CCCCcCCCCccccHHHHHH
Confidence 999999999999999999997 7998875331 0124678999999999999
Q ss_pred hhc--------------------cc-----cccchhhhhcChhhHHHHHHhhhC--hHHHHHHHHHHHHHhhcCC
Q 017040 314 IRK--------------------AG-----VLFSDQTLLTNAKTRAAVNGYAMN--QAMFFLDFQQAMVKMGMVD 361 (378)
Q Consensus 314 ~~~--------------------~g-----lL~SD~~L~~d~~T~~~V~~yA~d--~~~Ff~~Fa~AmvKM~~lg 361 (378)
+.- .| .+.+|..|.+|++.|++|+.||+| |++||+||++||.|++++.
T Consensus 222 Ld~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 222 LDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred hcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 851 01 268899999999999999999998 9999999999999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.6e-33 Score=298.55 Aligned_cols=220 Identities=23% Similarity=0.279 Sum_probs=176.3
Q ss_pred HHHHHHHH---HHhcCCChhhHHHHHhhcccCc-------cCCCce-eeecCCCCCccccCCCCC--CCCc-hhhhHHHH
Q 017040 105 IVKNAVDR---ALDDDPTLAAALVRMHFHDCFI-------EGCDGS-VLIDSTQDNKAEKDSPGN--LSLR-GYEVIDDA 170 (378)
Q Consensus 105 iVr~~v~~---~~~~~~~~aa~lLRL~FHDcfv-------~GCDgS-iLLd~t~~~~~E~~~~~N--~~Lr-g~~vId~i 170 (378)
.|+++|.+ .+....-..+.|||++||++.+ ||++|+ |.|. +|++++.| .+|. .+++++.|
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~I 502 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEKI 502 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHHH
Confidence 34555554 3556667889999999999974 899999 7665 79999999 7886 58899999
Q ss_pred HHHHHhhCCCCCcHHHHHHHhhhhhhhhc---CCC--ccccCCCCCCCCCCCccccCCCC---CC------------Ccc
Q 017040 171 KNQLEEQCPGVVSCADIIAMAARDAIFWA---GGP--IYDIPKGRKDGRRSKIEDTINLP---FP------------TFN 230 (378)
Q Consensus 171 K~~le~~CP~~VScADilalAardAV~~~---GGP--~~~v~~GR~D~~~s~~~~~~~LP---~p------------~~~ 230 (378)
|++..+ ..||.||+|+||+..|||.+ ||| .+++.+||.|............| .+ ...
T Consensus 503 k~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~ 579 (716)
T TIGR00198 503 QAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTP 579 (716)
T ss_pred HHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCH
Confidence 988731 26999999999999999998 998 57899999999876432112222 11 223
Q ss_pred HHHHHHHHHhCCCChhhhhhhhcc-ccccccccccCCCCCCCCCCCCCHHHHHHhcccCCCCCCCCCCCCCCCCccccHH
Q 017040 231 ASELIRAFGQRGFTAQEMVVLSGA-HTIGVARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLY 309 (378)
Q Consensus 231 ~~~l~~~F~~~Gls~~elVaLsGA-HTiG~ahc~~f~~Rl~~~Dp~ld~~f~~~L~~~Cp~g~~~~~lD~~TP~~FDN~Y 309 (378)
...|++.|.++|||+.|||||+|| |++|++|..++. ..++.+|.+|||.|
T Consensus 580 ~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~~-----------------------------G~~T~~p~~f~Ndf 630 (716)
T TIGR00198 580 EELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSKH-----------------------------GVFTDRVGVLSNDF 630 (716)
T ss_pred HHHHHHHHHhCCCChHHHHheecchhhccccCCCCCC-----------------------------CCCcCCCCccccHH
Confidence 567899999999999999999999 599999864321 12357899999999
Q ss_pred HHHHhhcc--------------------c---c--ccchhhhhcChhhHHHHHHhhhCh--HHHHHHHHHHHHHhhcCCc
Q 017040 310 FNALIRKA--------------------G---V--LFSDQTLLTNAKTRAAVNGYAMNQ--AMFFLDFQQAMVKMGMVDV 362 (378)
Q Consensus 310 yknl~~~~--------------------g---l--L~SD~~L~~d~~T~~~V~~yA~d~--~~Ff~~Fa~AmvKM~~lgv 362 (378)
|+||+.-. | + ..+|..|.+|++.|++|+.||+|+ ++||+||++||.|+.+++-
T Consensus 631 F~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 631 FVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred HHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCCC
Confidence 99998610 1 2 278999999999999999999997 8999999999999999874
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=4.4e-33 Score=293.93 Aligned_cols=220 Identities=22% Similarity=0.249 Sum_probs=181.0
Q ss_pred HHHHHHHhcCCChhhHHHHHhhcccCc-------cCCCce-eeecCCCCCccccCCCCCC--CCc-hhhhHHHHHHHHHh
Q 017040 108 NAVDRALDDDPTLAAALVRMHFHDCFI-------EGCDGS-VLIDSTQDNKAEKDSPGNL--SLR-GYEVIDDAKNQLEE 176 (378)
Q Consensus 108 ~~v~~~~~~~~~~aa~lLRL~FHDcfv-------~GCDgS-iLLd~t~~~~~E~~~~~N~--~Lr-g~~vId~iK~~le~ 176 (378)
..+++.+....-..+.|||++||++.+ ||++|+ |.|. +|++++.|. +|. .+++++.||++...
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 567777777777899999999999974 899999 7775 799999998 886 58999999999854
Q ss_pred hC--CCCCcHHHHHHHhhhhhhhhc---CC--CccccCCCCCCCCCCCcccc---CCCCCCC------------ccHHHH
Q 017040 177 QC--PGVVSCADIIAMAARDAIFWA---GG--PIYDIPKGRKDGRRSKIEDT---INLPFPT------------FNASEL 234 (378)
Q Consensus 177 ~C--P~~VScADilalAardAV~~~---GG--P~~~v~~GR~D~~~s~~~~~---~~LP~p~------------~~~~~l 234 (378)
.- ...||.||+|+||+..|||.+ || |.+++..||.|......... ..+|.+. ...+.|
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHH
Confidence 32 125999999999999999998 68 99999999999987543221 2456543 134789
Q ss_pred HHHHHhCCCChhhhhhhhccc-cccccccccCCCCCCCCCCCCCHHHHHHhcccCCCCCCCCCCCCCCCCccccHHHHHH
Q 017040 235 IRAFGQRGFTAQEMVVLSGAH-TIGVARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNAL 313 (378)
Q Consensus 235 ~~~F~~~Gls~~elVaLsGAH-TiG~ahc~~f~~Rl~~~Dp~ld~~f~~~L~~~Cp~g~~~~~lD~~TP~~FDN~Yyknl 313 (378)
++.|.++|||+.|||||+||| ++|+.|..++. ..++.+|.+|||.||+||
T Consensus 596 ~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~~-----------------------------G~~T~~p~~fsNdfFvnL 646 (726)
T PRK15061 596 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGSKH-----------------------------GVFTDRPGVLTNDFFVNL 646 (726)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCCCC-----------------------------CCCcCCCCccccHHHHHH
Confidence 999999999999999999997 78888744310 123578999999999999
Q ss_pred hhc----------c----------c---c--ccchhhhhcChhhHHHHHHhhhC--hHHHHHHHHHHHHHhhcCCc
Q 017040 314 IRK----------A----------G---V--LFSDQTLLTNAKTRAAVNGYAMN--QAMFFLDFQQAMVKMGMVDV 362 (378)
Q Consensus 314 ~~~----------~----------g---l--L~SD~~L~~d~~T~~~V~~yA~d--~~~Ff~~Fa~AmvKM~~lgv 362 (378)
+.- . | + +.+|..|.+|++.|++|+.||+| +++||+||++||.|+.+++-
T Consensus 647 Ldm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeldr 722 (726)
T PRK15061 647 LDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLDR 722 (726)
T ss_pred hcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence 851 1 1 1 47899999999999999999999 99999999999999999873
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9e-31 Score=265.98 Aligned_cols=248 Identities=22% Similarity=0.285 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHhcCC--------ChhhHHHHHhhcccCc-------cCCCceeeecCCCCCccccCCCCCCCCc-hhhhH
Q 017040 104 QIVKNAVDRALDDDP--------TLAAALVRMHFHDCFI-------EGCDGSVLIDSTQDNKAEKDSPGNLSLR-GYEVI 167 (378)
Q Consensus 104 ~iVr~~v~~~~~~~~--------~~aa~lLRL~FHDcfv-------~GCDgSiLLd~t~~~~~E~~~~~N~~Lr-g~~vI 167 (378)
..|++++.+.+.... ..+|-+|||+||-+.+ ||..+. .-++.++.++|.|.+|+ ++.++
T Consensus 70 ~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G-----~qRFaPlnSWPDN~nLDKarRLL 144 (730)
T COG0376 70 AAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGG-----QQRFAPLNSWPDNANLDKARRLL 144 (730)
T ss_pred HHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCC-----ceecccccCCCcccchHHHHHHh
Confidence 356677777766542 4889999999999864 343331 12356899999999997 79999
Q ss_pred HHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCCccccCCCCCCCCCCCc-----------------------------
Q 017040 168 DDAKNQLEEQCPGVVSCADIIAMAARDAIFWAGGPIYDIPKGRKDGRRSKI----------------------------- 218 (378)
Q Consensus 168 d~iK~~le~~CP~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~----------------------------- 218 (378)
..||+++ ++.+|+||++.|++..|++.+|++.+.+..||.|-..+..
T Consensus 145 WPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaav 220 (730)
T COG0376 145 WPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAV 220 (730)
T ss_pred hhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhh
Confidence 9999987 6789999999999999999999999999999999877654
Q ss_pred ---------cccCCCCCCCccHHHHHHHHHhCCCChhhhhhhh-ccccccccccccCCCCCCCCCCCCCHHHHHHh--cc
Q 017040 219 ---------EDTINLPFPTFNASELIRAFGQRGFTAQEMVVLS-GAHTIGVARCSSFKSRLTGVDPTLDSDFAKTL--SK 286 (378)
Q Consensus 219 ---------~~~~~LP~p~~~~~~l~~~F~~~Gls~~elVaLs-GAHTiG~ahc~~f~~Rl~~~Dp~ld~~f~~~L--~~ 286 (378)
++++..|+|-.+..+++..|++|++|++|.|||+ ||||+|++|...-.+ ..+++|.-.+--.+.| ++
T Consensus 221 qMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~-~vg~ePe~a~ie~qGlGW~~ 299 (730)
T COG0376 221 QMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPAS-NVGPEPEAAPIEQQGLGWAN 299 (730)
T ss_pred eeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchh-hcCCCccccchhhhcccccc
Confidence 2336689999999999999999999999999999 699999999876322 2257776544444444 45
Q ss_pred cCCCCC-------CCCCCCCCCCCccccHHHHHHhhc-----------------------------------cccccchh
Q 017040 287 TCSAGD-------NAEQPFDATRNDFDNLYFNALIRK-----------------------------------AGVLFSDQ 324 (378)
Q Consensus 287 ~Cp~g~-------~~~~lD~~TP~~FDN~Yyknl~~~-----------------------------------~glL~SD~ 324 (378)
.|..|. .....++.||++|||+||.+|++- ..||.+|.
T Consensus 300 ~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDl 379 (730)
T COG0376 300 TYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDL 379 (730)
T ss_pred ccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccch
Confidence 555331 234457889999999999999762 14899999
Q ss_pred hhhcChhhHHHHHHhhhChHHHHHHHHHHHHHhhcCC
Q 017040 325 TLLTNAKTRAAVNGYAMNQAMFFLDFQQAMVKMGMVD 361 (378)
Q Consensus 325 ~L~~d~~T~~~V~~yA~d~~~Ff~~Fa~AmvKM~~lg 361 (378)
+|.-||..+++.++|..|++.|.+.|+.||-||..-+
T Consensus 380 aLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 380 ALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred hhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999997543
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.30 E-value=2.1e-11 Score=125.64 Aligned_cols=215 Identities=23% Similarity=0.267 Sum_probs=153.8
Q ss_pred HHHHHHHhcCCChhhHHHHHhhcccCc-------cCCCce-eeecCCCCCccccCCCCCCC--Cc-hhhhHHHHHHHHHh
Q 017040 108 NAVDRALDDDPTLAAALVRMHFHDCFI-------EGCDGS-VLIDSTQDNKAEKDSPGNLS--LR-GYEVIDDAKNQLEE 176 (378)
Q Consensus 108 ~~v~~~~~~~~~~aa~lLRL~FHDcfv-------~GCDgS-iLLd~t~~~~~E~~~~~N~~--Lr-g~~vId~iK~~le~ 176 (378)
..+++.+....-....|+-.+|-.+-+ ||.+|. |.|. +.++++.|.. |. -+.+++.|.+...
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 456677777777788999999988753 788887 5554 6899999964 33 4777788877765
Q ss_pred hCCCCCcHHHHHHHhhhhhhhh---cCCCc--cccCCCCCCCCCCCcccc--CCC-CCC------------CccHHHHHH
Q 017040 177 QCPGVVSCADIIAMAARDAIFW---AGGPI--YDIPKGRKDGRRSKIEDT--INL-PFP------------TFNASELIR 236 (378)
Q Consensus 177 ~CP~~VScADilalAardAV~~---~GGP~--~~v~~GR~D~~~s~~~~~--~~L-P~p------------~~~~~~l~~ 236 (378)
..||.||+|+|++..+||. .+|-. +++..||.|+........ ..| |-. ...-.-|++
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvD 601 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVD 601 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHH
Confidence 4699999999999999987 46765 466789999976543211 111 211 112444778
Q ss_pred HHHhCCCChhhhhhhhccc-cccccccccCCCCCCCCCCCCCHHHHHHhcccCCCCCCCCCCCCCCCCccccHHHHHHhh
Q 017040 237 AFGQRGFTAQEMVVLSGAH-TIGVARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFDATRNDFDNLYFNALIR 315 (378)
Q Consensus 237 ~F~~~Gls~~elVaLsGAH-TiG~ahc~~f~~Rl~~~Dp~ld~~f~~~L~~~Cp~g~~~~~lD~~TP~~FDN~Yyknl~~ 315 (378)
+-+-.+||.-||++|.||- -+|..+..+ ...+. +..|.++.|.||.||+.
T Consensus 602 kAqlL~LtapemtVLiGGlRvLg~n~g~s---------------------------~~GVf--T~~pg~LtndFFvnLlD 652 (730)
T COG0376 602 KAQLLTLTAPEMTVLIGGLRVLGANYGGS---------------------------KHGVF--TDRPGVLTNDFFVNLLD 652 (730)
T ss_pred HHHHhccCCccceEEEcceEeeccCCCCC---------------------------cccee--ccCcccccchhhhhhhh
Confidence 8888999999999999874 334332111 01122 23678888888888875
Q ss_pred c----------c----------cc-----ccchhhhhcChhhHHHHHHhhhC--hHHHHHHHHHHHHHhhcCC
Q 017040 316 K----------A----------GV-----LFSDQTLLTNAKTRAAVNGYAMN--QAMFFLDFQQAMVKMGMVD 361 (378)
Q Consensus 316 ~----------~----------gl-----L~SD~~L~~d~~T~~~V~~yA~d--~~~Ff~~Fa~AmvKM~~lg 361 (378)
= + |- -..|..+-+++..|.+.+.||+| ++.|.+||.+||.|..++.
T Consensus 653 M~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 653 MGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred ccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 1 1 21 25677777889999999999975 8999999999999998875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=66.04 E-value=43 Score=34.05 Aligned_cols=128 Identities=13% Similarity=0.156 Sum_probs=68.2
Q ss_pred cCCCccccCCCCCCCCCCCccccCCCCC----CCccHHHHHHHHHhCCC----------Chhhhhhhhcccccccccccc
Q 017040 199 AGGPIYDIPKGRKDGRRSKIEDTINLPF----PTFNASELIRAFGQRGF----------TAQEMVVLSGAHTIGVARCSS 264 (378)
Q Consensus 199 ~GGP~~~v~~GR~D~~~s~~~~~~~LP~----p~~~~~~l~~~F~~~Gl----------s~~elVaLsGAHTiG~ahc~~ 264 (378)
.|-..+..+.||.|...-........+. +-..+.++.+.|++.|+ |.+|+..|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l------- 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL------- 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE-------
Confidence 4777889999998665322111111221 12357788888988876 45777777777643
Q ss_pred CCCCCCCCCCCCCHHHHHHhcccC-CC-CC----CCCCCCCCCCCccccHHHHHHhhccccccchhhhhcChhhHHHHHH
Q 017040 265 FKSRLTGVDPTLDSDFAKTLSKTC-SA-GD----NAEQPFDATRNDFDNLYFNALIRKAGVLFSDQTLLTNAKTRAAVNG 338 (378)
Q Consensus 265 f~~Rl~~~Dp~ld~~f~~~L~~~C-p~-g~----~~~~lD~~TP~~FDN~Yyknl~~~~glL~SD~~L~~d~~T~~~V~~ 338 (378)
+++|...+.|...- .. .. ....-....+..+|-..|+-..+..++ .-.+...-++.
T Consensus 253 ----------Ti~p~ll~~L~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~fr~~~~~d~m--------a~ekl~~gir~ 314 (333)
T PTZ00411 253 ----------TISPKLLEELANTEDGPVERKLDPEKLTEDTEKLPELTEKEFRWELNEDAM--------ATEKLAEGIRN 314 (333)
T ss_pred ----------eCCHHHHHHHHhCCCcccCcccCcccccccccccCCCCHHHHHHHhCCCcc--------hHHHHHHHHHH
Confidence 34455666654321 10 00 001111112356688888643322222 11234467788
Q ss_pred hhhChHHHHHHHH
Q 017040 339 YAMNQAMFFLDFQ 351 (378)
Q Consensus 339 yA~d~~~Ff~~Fa 351 (378)
|+.|+....+-..
T Consensus 315 F~~d~~~Le~~i~ 327 (333)
T PTZ00411 315 FAKDLEKLENVIR 327 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 8887766554443
No 20
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=54.32 E-value=1e+02 Score=31.97 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=42.9
Q ss_pred CcHHHHHHHhhhhhh--hhcCCCccccCCCCCCCCCCCccccCCCCCCC----ccHHHHHHHHHhCCC----------Ch
Q 017040 182 VSCADIIAMAARDAI--FWAGGPIYDIPKGRKDGRRSKIEDTINLPFPT----FNASELIRAFGQRGF----------TA 245 (378)
Q Consensus 182 VScADilalAardAV--~~~GGP~~~v~~GR~D~~~s~~~~~~~LP~p~----~~~~~l~~~F~~~Gl----------s~ 245 (378)
|.|-=.+.|....|+ ...|-..+..+.||.|...-.......+|... ..+.++.+.|++.|+ +.
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~ 234 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNI 234 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCH
Confidence 444444444444433 23577889999999887432211111244332 247888888888775 34
Q ss_pred hhhhhhhcccc
Q 017040 246 QEMVVLSGAHT 256 (378)
Q Consensus 246 ~elVaLsGAHT 256 (378)
+|+..|.|+|.
T Consensus 235 ~~v~~laG~d~ 245 (391)
T PRK12309 235 GEIIELAGCDL 245 (391)
T ss_pred HHHHHHHCCCe
Confidence 55666666553
No 21
>PRK12346 transaldolase A; Provisional
Probab=50.86 E-value=88 Score=31.62 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=74.6
Q ss_pred CcHHHHHHHhhhhhh--hhcCCCccccCCCCCCCCCCCccccCCCCC----CCccHHHHHHHHHhCCC----------Ch
Q 017040 182 VSCADIIAMAARDAI--FWAGGPIYDIPKGRKDGRRSKIEDTINLPF----PTFNASELIRAFGQRGF----------TA 245 (378)
Q Consensus 182 VScADilalAardAV--~~~GGP~~~v~~GR~D~~~s~~~~~~~LP~----p~~~~~~l~~~F~~~Gl----------s~ 245 (378)
|+|-=.+.|....++ ...|-..+..+.||.|...-.......++. +-..+.++.+.|++.|+ |.
T Consensus 150 I~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~ 229 (316)
T PRK12346 150 INCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRT 229 (316)
T ss_pred CceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCH
Confidence 555544555554444 336888899999999875322111111211 12457888889988875 45
Q ss_pred hhhhhhhccccccccccccCCCCCCCCCCCCCHHHHHHhcccCCCCCCCCCCCC-----CCCCccccHHHHHHhhccccc
Q 017040 246 QEMVVLSGAHTIGVARCSSFKSRLTGVDPTLDSDFAKTLSKTCSAGDNAEQPFD-----ATRNDFDNLYFNALIRKAGVL 320 (378)
Q Consensus 246 ~elVaLsGAHTiG~ahc~~f~~Rl~~~Dp~ld~~f~~~L~~~Cp~g~~~~~lD~-----~TP~~FDN~Yyknl~~~~glL 320 (378)
+|+.+|.|+|.+ +++|...++|...-..-. ..+++ ..|..+|..=|+- .+
T Consensus 230 ~qi~alaG~d~l-----------------Ti~p~ll~~L~~~~~~~~--~~l~~~~~~~~~~~~~~e~~fr~------~~ 284 (316)
T PRK12346 230 EQILALAGCDRL-----------------TISPNLLKELQESESPVE--RKLIPSSQTFPRPAPMSEAEFRW------EH 284 (316)
T ss_pred HHHHHHhCCCEE-----------------eCCHHHHHHHHhcCCCcc--cccChhhhcccCCCCCCHHHHHH------Hh
Confidence 666777776643 455666666644211000 00111 1144556555542 12
Q ss_pred cchhhhhcChhhHHHHHHhhhChHHHHHHH
Q 017040 321 FSDQTLLTNAKTRAAVNGYAMNQAMFFLDF 350 (378)
Q Consensus 321 ~SD~~L~~d~~T~~~V~~yA~d~~~Ff~~F 350 (378)
+.|.. .-.+..+=++.|+.|+....+-+
T Consensus 285 ~~d~m--A~ekl~eGIr~F~~d~~~Le~~i 312 (316)
T PRK12346 285 NQDAM--AVEKLSEGIRLFAVDQRKLEDLL 312 (316)
T ss_pred CcCHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33321 11235666788888876655444
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=49.30 E-value=1.1e+02 Score=30.85 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=67.2
Q ss_pred hcCCCccccCCCCCCCCCCCccccCCCC----CCCccHHHHHHHHHhCCCC----------hhhhhhhhccccccccccc
Q 017040 198 WAGGPIYDIPKGRKDGRRSKIEDTINLP----FPTFNASELIRAFGQRGFT----------AQEMVVLSGAHTIGVARCS 263 (378)
Q Consensus 198 ~~GGP~~~v~~GR~D~~~s~~~~~~~LP----~p~~~~~~l~~~F~~~Gls----------~~elVaLsGAHTiG~ahc~ 263 (378)
..|-..+..+.||.|...-........+ ++-..+.++.+.|++.|+. .+|+.+|.|+|.+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~~------ 240 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDRL------ 240 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCeE------
Confidence 3577889999999876422111000111 1234678888899888864 4555566665532
Q ss_pred cCCCCCCCCCCCCCHHHHHHhcccC-CCCC-----CCCCCCCCCCCccccHHHHHHhhccccccchhhhhcChhhHHHHH
Q 017040 264 SFKSRLTGVDPTLDSDFAKTLSKTC-SAGD-----NAEQPFDATRNDFDNLYFNALIRKAGVLFSDQTLLTNAKTRAAVN 337 (378)
Q Consensus 264 ~f~~Rl~~~Dp~ld~~f~~~L~~~C-p~g~-----~~~~lD~~TP~~FDN~Yyknl~~~~glL~SD~~L~~d~~T~~~V~ 337 (378)
+++|...++|...- |-.. .....+ ..|..+|...|+-..+..++ .-.+...-++
T Consensus 241 -----------Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~-~~~~~~~e~~fr~~~~~d~m--------a~ekl~~gir 300 (317)
T TIGR00874 241 -----------TISPALLDELKESTGPVERKLDPESAKKVD-KQPIILDESEFRFLHNEDAM--------ATEKLAEGIR 300 (317)
T ss_pred -----------eCCHHHHHHHHhCCCCcCccCCcccccccc-ccCCCCCHHHHHHHhCCCcc--------hHHHHHHHHH
Confidence 45566666664321 1000 000011 23456788888643333222 1123456677
Q ss_pred HhhhChHHHHHH
Q 017040 338 GYAMNQAMFFLD 349 (378)
Q Consensus 338 ~yA~d~~~Ff~~ 349 (378)
.|+.|+....+-
T Consensus 301 ~F~~d~~~Le~~ 312 (317)
T TIGR00874 301 KFAADQEKLEKL 312 (317)
T ss_pred HHHHHHHHHHHH
Confidence 788777655443
No 23
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=48.61 E-value=15 Score=29.87 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhcCCcc
Q 017040 345 MFFLDFQQAMVKMGMVDVK 363 (378)
Q Consensus 345 ~Ff~~Fa~AmvKM~~lgvl 363 (378)
...++|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 3578999999999999753
No 24
>PRK05269 transaldolase B; Provisional
Probab=44.10 E-value=1.1e+02 Score=30.78 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=65.8
Q ss_pred cCCCccccCCCCCCCCCCCccccCCC----CCCCccHHHHHHHHHhCCCCh----------hhhhhhhcccccccccccc
Q 017040 199 AGGPIYDIPKGRKDGRRSKIEDTINL----PFPTFNASELIRAFGQRGFTA----------QEMVVLSGAHTIGVARCSS 264 (378)
Q Consensus 199 ~GGP~~~v~~GR~D~~~s~~~~~~~L----P~p~~~~~~l~~~F~~~Gls~----------~elVaLsGAHTiG~ahc~~ 264 (378)
.|-..+..+.||.|...-...+.... -++-..+.++.+.|++.|+.. .++..|.|+|++
T Consensus 170 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~~~v~~laG~d~v------- 242 (318)
T PRK05269 170 AGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQILELAGCDRL------- 242 (318)
T ss_pred cCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCHHHHHHHhCCCeE-------
Confidence 57788899999998642211110001 112346888889999888754 344444444432
Q ss_pred CCCCCCCCCCCCCHHHHHHhccc-CCCCCCCCCCC--CCCCCccccHHHHHHhhccccccchhhhhcChhhHHHHHHhhh
Q 017040 265 FKSRLTGVDPTLDSDFAKTLSKT-CSAGDNAEQPF--DATRNDFDNLYFNALIRKAGVLFSDQTLLTNAKTRAAVNGYAM 341 (378)
Q Consensus 265 f~~Rl~~~Dp~ld~~f~~~L~~~-Cp~g~~~~~lD--~~TP~~FDN~Yyknl~~~~glL~SD~~L~~d~~T~~~V~~yA~ 341 (378)
+++|...+.|... .+-.....+.+ ...+..+|-..|+..++..+ .......+-++.|+.
T Consensus 243 ----------Ti~p~ll~~l~~~~~~~~~~l~~~~~~~~~~~~~~e~~f~~~~~~d~--------ma~ekl~egi~~F~~ 304 (318)
T PRK05269 243 ----------TISPALLEELAASEGELERKLSPPGEAKARPVPLTEAEFRWQHNEDA--------MATEKLAEGIRKFAK 304 (318)
T ss_pred ----------ECCHHHHHHHHhcCCCccccCCCccccccccccCCHHHHHHHhCccc--------chHHHHHHHHHHHHH
Confidence 5567777777532 22110000000 11245567777765333222 122334566777777
Q ss_pred ChHHHHHHH
Q 017040 342 NQAMFFLDF 350 (378)
Q Consensus 342 d~~~Ff~~F 350 (378)
|++...+-+
T Consensus 305 ~~~~L~~~i 313 (318)
T PRK05269 305 DQEKLEKLI 313 (318)
T ss_pred HHHHHHHHH
Confidence 766554443
No 25
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=44.08 E-value=1e+02 Score=31.02 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=41.0
Q ss_pred CcHHHHHHHhhhhhhh--hcCCCccccCCCCCCCCCCCccccCCCCC----CCccHHHHHHHHHhCCCC----------h
Q 017040 182 VSCADIIAMAARDAIF--WAGGPIYDIPKGRKDGRRSKIEDTINLPF----PTFNASELIRAFGQRGFT----------A 245 (378)
Q Consensus 182 VScADilalAardAV~--~~GGP~~~v~~GR~D~~~s~~~~~~~LP~----p~~~~~~l~~~F~~~Gls----------~ 245 (378)
|+|-=.+.|....|+. ..|-..+..+.||.|-..-........+. +-..+.++.+.|++.|+. .
T Consensus 149 I~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfRn~ 228 (313)
T cd00957 149 IHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNI 228 (313)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccCCH
Confidence 4444444444444332 34777889999999865221111011111 224588888899888874 4
Q ss_pred hhhhhhhccc
Q 017040 246 QEMVVLSGAH 255 (378)
Q Consensus 246 ~elVaLsGAH 255 (378)
+|+..|.|+|
T Consensus 229 ~~v~~laG~d 238 (313)
T cd00957 229 GQILALAGCD 238 (313)
T ss_pred HHHHHHhCCC
Confidence 4555555554
No 26
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=40.88 E-value=41 Score=22.91 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=9.3
Q ss_pred ccCchhHHHHHH
Q 017040 32 SHSIPAYLYIFV 43 (378)
Q Consensus 32 ~~~~~~~~~~~~ 43 (378)
|-++|+|+|+..
T Consensus 5 s~gtp~y~y~Ip 16 (33)
T TIGR03068 5 NAGTPAYIYAIP 16 (33)
T ss_pred CCCCcchhhHHH
Confidence 568999999743
No 27
>PLN02161 beta-amylase
Probab=26.49 E-value=70 Score=34.47 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=23.8
Q ss_pred HHHHhhhChHHHHHHHHHHHHHhh-----cCCccCCCCCcccc
Q 017040 335 AVNGYAMNQAMFFLDFQQAMVKMG-----MVDVKEGGKGEVRH 372 (378)
Q Consensus 335 ~V~~yA~d~~~Ff~~Fa~AmvKM~-----~lgvltG~~GEIR~ 372 (378)
-++.|. .|.+.|.+.|.-.. +|.|=-|+.||.|-
T Consensus 234 plq~Y~----Dfm~SFr~~F~~~~~~~I~eI~VGlGP~GELRY 272 (531)
T PLN02161 234 AVQCYE----DFMLSFSTKFEPYIGNVIEEISIGLGPSGELRY 272 (531)
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCceEEEEeccccCccccC
Confidence 456674 37777777777653 55566699999985
No 28
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=24.14 E-value=51 Score=29.41 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhCCCChhhh-hhhhcccccccccc
Q 017040 229 FNASELIRAFGQRGFTAQEM-VVLSGAHTIGVARC 262 (378)
Q Consensus 229 ~~~~~l~~~F~~~Gls~~el-VaLsGAHTiG~ahc 262 (378)
+++.+.+-.|++|||++.++ |.|--+|-||+++-
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r~ 65 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVRF 65 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhhe
Confidence 45667778999999999997 44558999998853
No 29
>PRK06580 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=22.49 E-value=1e+02 Score=26.17 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=21.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhH
Q 017040 35 IPAYLYIFVLFYDIILVNMLLKSRMS 60 (378)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (378)
|-...|++.+++||+..|..++++.-
T Consensus 7 i~~~~y~~~~~~eiv~sni~Va~~vl 32 (103)
T PRK06580 7 IKFILYFPWLLLEIWKSAFSVIKIIW 32 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567899999999999998888744
No 30
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.23 E-value=4.1e+02 Score=21.26 Aligned_cols=28 Identities=21% Similarity=0.572 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHhhccc
Q 017040 105 IVKNAVDRALDDDPTLAAALVRMHFHDC 132 (378)
Q Consensus 105 iVr~~v~~~~~~~~~~aa~lLRL~FHDc 132 (378)
+.|+.+.+.++++|.+-...||+.+---
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qm 51 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQM 51 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8899999999999999999999987643
No 31
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=21.87 E-value=37 Score=32.66 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=11.6
Q ss_pred cCCCceeeeccCchhH
Q 017040 23 FTHPHIHIYSHSIPAY 38 (378)
Q Consensus 23 ~~~~~~~~~~~~~~~~ 38 (378)
..|||+||----.|.|
T Consensus 79 ~~HPH~Hvll~v~~~y 94 (233)
T PF01446_consen 79 SWHPHFHVLLFVKKSY 94 (233)
T ss_pred eeccceEEEEEecccc
Confidence 4899999975555554
Done!