BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017042
         (378 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DD5|C Chain C, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
           Native Holo-Enzyme
 pdb|2DD5|F Chain F, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
           Native Holo-Enzyme
 pdb|2DD5|I Chain I, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
           Native Holo-Enzyme
 pdb|2DD5|L Chain L, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
           Native Holo-Enzyme
 pdb|2DXB|C Chain C, Recombinant Thiocyanate Hydrolase Comprising
           Partially-Modified Cobalt Centers
 pdb|2DXB|F Chain F, Recombinant Thiocyanate Hydrolase Comprising
           Partially-Modified Cobalt Centers
 pdb|2DXB|I Chain I, Recombinant Thiocyanate Hydrolase Comprising
           Partially-Modified Cobalt Centers
 pdb|2DXB|L Chain L, Recombinant Thiocyanate Hydrolase Comprising
           Partially-Modified Cobalt Centers
 pdb|2DXB|O Chain O, Recombinant Thiocyanate Hydrolase Comprising
           Partially-Modified Cobalt Centers
 pdb|2DXB|R Chain R, Recombinant Thiocyanate Hydrolase Comprising
           Partially-Modified Cobalt Centers
 pdb|2DXB|U Chain U, Recombinant Thiocyanate Hydrolase Comprising
           Partially-Modified Cobalt Centers
 pdb|2DXB|X Chain X, Recombinant Thiocyanate Hydrolase Comprising
           Partially-Modified Cobalt Centers
 pdb|2DXC|C Chain C, Recombinant Thiocyanate Hydrolase, Fully-Matured Form
 pdb|2DXC|F Chain F, Recombinant Thiocyanate Hydrolase, Fully-Matured Form
 pdb|2DXC|I Chain I, Recombinant Thiocyanate Hydrolase, Fully-Matured Form
 pdb|2DXC|L Chain L, Recombinant Thiocyanate Hydrolase, Fully-Matured Form
 pdb|2ZZD|C Chain C, Recombinant Thiocyanate Hydrolase, Air-Oxidized Form Of
           Holo-Enzyme
 pdb|2ZZD|F Chain F, Recombinant Thiocyanate Hydrolase, Air-Oxidized Form Of
           Holo-Enzyme
 pdb|2ZZD|I Chain I, Recombinant Thiocyanate Hydrolase, Air-Oxidized Form Of
           Holo-Enzyme
 pdb|2ZZD|L Chain L, Recombinant Thiocyanate Hydrolase, Air-Oxidized Form Of
           Holo-Enzyme
          Length = 243

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 155 QPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDK 214
           +P P+ + +   D EI+ +  + E + EKG+  ++D + + DYV     G    A+L+ K
Sbjct: 16  KPAPMVEEV--SDFEILEMA-VRELAIEKGLFSAEDHRVWKDYVHTL--GPLPAARLVAK 70

Query: 215 IR---RLKKKCVNNLRKSAKKGGVRTFSNPHEQ 244
                  KK C+ +  +++K  GV   ++P  Q
Sbjct: 71  AWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQ 103


>pdb|2DD4|C Chain C, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
           Recombinant Apo-Enzyme
 pdb|2DD4|F Chain F, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
           Recombinant Apo-Enzyme
 pdb|2DD4|I Chain I, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
           Recombinant Apo-Enzyme
 pdb|2DD4|L Chain L, Thiocyanate Hydrolase (Scnase) From Thiobacillus Thioparus
           Recombinant Apo-Enzyme
          Length = 243

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 155 QPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDK 214
           +P P+ + +   D EI+ +  + E + EKG+  ++D + + DYV     G    A+L+ K
Sbjct: 16  KPAPMVEEV--SDFEILEMA-VRELAIEKGLFSAEDHRVWKDYVHTL--GPLPAARLVAK 70

Query: 215 IR---RLKKKCVNNLRKSAKKGGVRTFSNPHEQ 244
                  KK C+ +  +++K  GV   ++P  Q
Sbjct: 71  AWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQ 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.127    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,400,640
Number of Sequences: 62578
Number of extensions: 288546
Number of successful extensions: 535
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 6
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)