BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017042
         (378 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SB42|MDA1_ARATH Mediator-associated protein 1 OS=Arabidopsis thaliana GN=At4g25210
           PE=1 SV=1
          Length = 368

 Score =  118 bits (296), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 159/303 (52%), Gaps = 38/303 (12%)

Query: 94  GSEPGASPKPSEATKPTSS--KRPNEAENKEAANAK---DSKRAKKNGGADEELHKKEPG 148
           G++P      S AT P SS  KRP +    EA   +   D++  KK    DE   KK   
Sbjct: 77  GTKPIPETSGSAATVPESSTAKRPLKEAAPEAIKKQKTSDTEHVKKPITNDE--VKKISS 134

Query: 149 EDTKKQQPPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTK 208
           ED KK     +FQRL+SE DEI +L+ +I++++ KG DP +D  AF  YVK  +  D TK
Sbjct: 135 EDAKK-----MFQRLFSETDEIALLQGIIDFTSTKG-DPYEDIDAFCIYVKKLIDFDATK 188

Query: 209 AQLMDKIRRLKKKCVNNLRKSAKKGGVRT---FSNPHEQRAYDLSKKLW---------EG 256
            Q++ K++RLKKK  N ++ S KKG       F+   EQ+ ++LS+K+W         + 
Sbjct: 189 NQIVTKLQRLKKKFNNAVKNSLKKGKTEDDIEFAKDLEQKGFELSRKIWGSNGVLVTGKS 248

Query: 257 SEESTGGV-----MALSAAKSYKKNQSQRGNNELLAALKAELLGEEGAVGDKKGNAAVFF 311
           S +  GG      M L A  + KK Q +    E     +A+++    ++G +    A F 
Sbjct: 249 SRKKVGGTPAPKEMKLVAHSTPKKQQEEAKKPE---RTEAKVVNTGLSIGKE---IASFL 302

Query: 312 DKTLG-VAGLEEFVLHDGFNMIS-GAKKAELEERWKNLQVAQLKLFLQRNELIKEQALLI 369
           +   G   GL+E  L   +  ++ GA+K E+EE+WK L+  Q +L LQR+ L+ E A +I
Sbjct: 303 NADNGSSCGLDESTLTAVWAKVADGAEKREVEEKWKKLKAKQFELCLQRSGLVNETAKMI 362

Query: 370 LEA 372
            +A
Sbjct: 363 FKA 365


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.302    0.122    0.326 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,299,534
Number of Sequences: 539616
Number of extensions: 6508164
Number of successful extensions: 85561
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 3102
Number of HSP's that attempted gapping in prelim test: 49537
Number of HSP's gapped (non-prelim): 21888
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 62 (28.5 bits)