Query 017042
Match_columns 378
No_of_seqs 135 out of 168
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 84.5 2.7 9.3E-05 31.7 6.6 64 159-242 7-70 (72)
2 2ebi_A DNA binding protein GT- 76.5 4.6 0.00016 31.4 5.5 63 161-227 4-71 (86)
3 2yum_A ZZZ3 protein, zinc fing 66.1 7.4 0.00025 29.3 4.5 64 157-234 4-67 (75)
4 1x41_A Transcriptional adaptor 62.0 12 0.0004 27.2 4.7 51 158-227 5-55 (60)
5 1wgx_A KIAA1903 protein; MYB D 61.9 4.2 0.00014 31.6 2.3 54 156-218 3-56 (73)
6 1ug2_A 2610100B20RIK gene prod 56.4 32 0.0011 28.0 6.6 58 159-226 31-88 (95)
7 2roh_A RTBP1, telomere binding 55.3 94 0.0032 26.2 10.5 84 159-257 29-114 (122)
8 1x58_A Hypothetical protein 49 48.6 5.1 0.00017 30.3 0.8 48 160-219 7-56 (62)
9 2cjj_A Radialis; plant develop 48.3 36 0.0012 27.3 5.8 64 159-236 6-69 (93)
10 2cqr_A RSGI RUH-043, DNAJ homo 46.8 44 0.0015 25.6 5.9 54 158-227 15-68 (73)
11 2yus_A SWI/SNF-related matrix- 46.1 25 0.00086 27.2 4.5 34 159-200 16-49 (79)
12 2cqq_A RSGI RUH-037, DNAJ homo 45.3 33 0.0011 26.1 5.0 61 160-236 7-67 (72)
13 2k9n_A MYB24; R2R3 domain, DNA 44.9 58 0.002 25.9 6.7 51 160-223 52-102 (107)
14 3osg_A MYB21; transcription-DN 44.3 52 0.0018 27.1 6.5 72 159-253 9-80 (126)
15 2hzd_A Transcriptional enhance 42.4 56 0.0019 25.9 6.0 61 161-223 6-76 (82)
16 3sjm_A Telomeric repeat-bindin 41.5 52 0.0018 24.3 5.4 48 161-219 11-59 (64)
17 3rjp_A COVR; winged helix-turn 41.2 37 0.0013 25.9 4.8 52 167-224 25-76 (96)
18 1h8a_C AMV V-MYB, MYB transfor 40.6 57 0.002 26.7 6.2 77 157-256 23-99 (128)
19 2ckx_A NGTRF1, telomere bindin 38.7 71 0.0024 25.0 6.1 52 162-221 1-52 (83)
20 3osg_A MYB21; transcription-DN 38.5 1E+02 0.0035 25.2 7.4 51 160-223 61-111 (126)
21 3kmi_A Putative membrane prote 36.9 49 0.0017 29.3 5.5 58 168-225 83-142 (177)
22 2elk_A SPCC24B10.08C protein; 36.3 26 0.00089 25.2 3.0 35 158-199 6-40 (58)
23 1wi9_A Protein C20ORF116 homol 33.2 23 0.0008 27.5 2.3 41 171-220 7-47 (72)
24 2z9m_A Response regulator YYCF 33.0 43 0.0015 26.9 4.1 52 167-224 39-90 (120)
25 2aje_A Telomere repeat-binding 31.4 71 0.0024 26.2 5.2 52 159-221 11-65 (105)
26 2juh_A Telomere binding protei 31.4 1.4E+02 0.0047 25.1 7.0 86 159-257 15-100 (121)
27 1gv2_A C-MYB, MYB proto-oncoge 29.3 85 0.0029 24.6 5.2 73 161-256 4-76 (105)
28 2hwv_A DNA-binding response re 29.3 73 0.0025 25.8 4.9 52 167-224 46-97 (121)
29 2k9n_A MYB24; R2R3 domain, DNA 29.2 1.1E+02 0.0039 24.1 6.0 72 162-256 2-73 (107)
30 3zq7_A KDP operon transcriptio 28.9 59 0.002 25.0 4.2 52 167-224 31-82 (102)
31 2zxj_A Transcriptional regulat 28.9 67 0.0023 26.4 4.7 53 166-224 38-90 (120)
32 1ity_A TRF1; helix-turn-helix, 26.1 58 0.002 23.9 3.5 53 157-227 6-59 (69)
33 1gv2_A C-MYB, MYB proto-oncoge 25.7 75 0.0026 24.9 4.3 47 159-218 54-100 (105)
34 1h89_C C-MYB, MYB proto-oncoge 24.9 1.7E+02 0.0058 24.6 6.7 75 159-256 56-130 (159)
35 2lr8_A CAsp8-associated protei 29.0 17 0.00059 28.1 0.0 53 160-223 13-65 (70)
36 2oku_A Acyl-COA dehydrogenase 22.4 90 0.0031 26.7 4.3 61 193-254 13-76 (131)
37 2pmu_A Response regulator PHOP 22.4 85 0.0029 24.7 4.0 52 166-223 36-87 (110)
38 1sb0_B Protein C-MYB; CREB-bin 22.2 50 0.0017 20.7 1.9 16 345-360 1-16 (26)
39 1gxq_A PHOB, phosphate regulon 22.0 81 0.0028 24.5 3.8 53 166-224 33-85 (106)
40 2jzy_A Transcriptional regulat 21.4 73 0.0025 25.3 3.4 52 166-223 30-81 (112)
41 2hqn_A Putative transcriptiona 21.1 53 0.0018 25.7 2.5 52 167-224 32-83 (109)
42 2kmu_A ATP-dependent DNA helic 20.5 73 0.0025 23.4 2.9 35 177-221 18-53 (56)
43 2iw5_B Protein corest, REST co 20.5 68 0.0023 30.1 3.4 48 161-221 133-180 (235)
44 2k4j_A Putative transcriptiona 20.5 95 0.0033 24.8 4.0 52 167-224 44-95 (115)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=84.46 E-value=2.7 Score=31.75 Aligned_cols=64 Identities=13% Similarity=0.202 Sum_probs=42.1
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 017042 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTF 238 (378)
Q Consensus 159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p~f 238 (378)
.....||.+++..||+++..| |. +|..+..+|.+. |..|+ |.||.+.+.++.+.|..+..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~----G~----~W~~Ia~~~~~R-----t~~q~-------k~r~~~~l~~~~~~g~~~~~ 66 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKF----GR----RWTKISKLIGSR-----TVLQV-------KSYARQYFKNKVKCGLDKET 66 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHT----CS----CHHHHHHHHSSS-----CHHHH-------HHHHHHHHHHHSCSCTTCCC
T ss_pred cCCCCCCHHHHHHHHHHHHHH----Cc----CHHHHHHHcCCC-----CHHHH-------HHHHHHHHHHHHhcCCCCCc
Confidence 445689999999999988765 63 677766665443 44444 56666666655566776654
Q ss_pred CChh
Q 017042 239 SNPH 242 (378)
Q Consensus 239 ~~~H 242 (378)
..-|
T Consensus 67 ~si~ 70 (72)
T 2cu7_A 67 PNQK 70 (72)
T ss_dssp SCCC
T ss_pred cccc
Confidence 4444
No 2
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=76.53 E-value=4.6 Score=31.37 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=42.3
Q ss_pred cCCCCchhHHHHHHHHHHH--HHhhCCCCCccHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHhh
Q 017042 161 QRLWSEDDEIIVLKRMIEY--STEKGIDPSQDTQAFYDYVKNSLH---GDYTKAQLMDKIRRLKKKCVNNLR 227 (378)
Q Consensus 161 qR~WS~eDEI~ILqgli~~--~~~~G~~P~~D~~af~~~ik~sL~---~~~s~~QL~~KvRrLKkKY~~~~~ 227 (378)
...|+.+.=+.||+..-.+ .-..|. + -..+|+.|...|. +..|..|..+|+..|+++|..+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~-~---~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSK-S---NKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSS-C---CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccc-c---chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3479996555555555331 112233 2 1457777666655 789999999999999999997653
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.15 E-value=7.4 Score=29.35 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=37.8
Q ss_pred CCcccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCC
Q 017042 157 PPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGG 234 (378)
Q Consensus 157 ~~~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~ 234 (378)
|......||.+++..||+++..|-..+ ....+|..+..+|.+ =|..| .|.||.+.+.+..+.|.
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g~~~--~~~~~W~~IA~~~~~-----Rt~~q-------cr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYPPEE--VESRRWQKIADELGN-----RTAKQ-------VASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSCCCS--CHHHHHHHHHHHHSS-----SCHHH-------HHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC--CCcccHHHHHHHhCC-----CCHHH-------HHHHHHHHHHHHHhcCC
Confidence 345567899999999999887663111 001456666655543 24444 44666655553445663
No 4
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=62.02 E-value=12 Score=27.19 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=34.9
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 017042 158 PLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLR 227 (378)
Q Consensus 158 ~~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~ 227 (378)
......||.+++..||+++..| |. .+|..+..+|.++ |.. ..|.||.+.+.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~----G~---~~W~~Ia~~~~~R-----t~~-------qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDC----GF---GNWQDVANQMCTK-----TKE-------ECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHT----CT---TCHHHHHHHHTTS-----CHH-------HHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHH----Cc---CcHHHHHHHhCCC-----CHH-------HHHHHHHHHcc
Confidence 4567789999999999998665 52 4677766666432 333 45677777764
No 5
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=61.89 E-value=4.2 Score=31.62 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=33.0
Q ss_pred CCCcccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 017042 156 PPPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRL 218 (378)
Q Consensus 156 ~~~~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrL 218 (378)
|+......||.++...|+++|+.|-.. .| .+++.|...+.. =|..|+..+...|
T Consensus 3 ~~~~~~~~WT~eE~k~fe~ALa~~~~~---tp-----~rWe~IA~~V~g-KT~eE~~~hY~~l 56 (73)
T 1wgx_A 3 SGSSGDKEWNEKELQKLHCAFASLPKH---KP-----GFWSEVAAAVGS-RSPEECQRKYMEN 56 (73)
T ss_dssp CCCCSSSCCCHHHHHHHHHHHHHSCSS---SS-----SHHHHHHHHTTT-SCHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCC---Cc-----cHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 344456689999999999999988421 12 244444444332 4666666444333
No 6
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=56.38 E-value=32 Score=28.04 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=39.1
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh
Q 017042 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNL 226 (378)
Q Consensus 159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~ 226 (378)
-.-=+||.++...||+. | ++.|..|. -+. +|...|. +-+.+|+.+.++-|-+=|....
T Consensus 31 e~VvlWTRe~DR~IL~~---c-Q~~G~s~~-tFa----~iA~~L~-Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 31 EKVVLWTREADRVILTM---C-QEQGAQPH-TFS----VISQQLG-NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCCSSSCHHHHHHHHHH---H-HHTTSCTT-THH----HHHHHHS-SCCHHHHHHHHHHHHHHHHHCS
T ss_pred CEEEEeccccCHHHHHH---H-HhcCCChh-HHH----HHHHHHc-cCCHHHHHHHHHHHHHHHHHHh
Confidence 34668999999999875 3 46685553 122 2333221 3478999999999988887664
No 7
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=55.30 E-value=94 Score=26.16 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=50.9
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 017042 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTF 238 (378)
Q Consensus 159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p~f 238 (378)
.-.+.||.+.+-.|++|+-.| |. ..|..+.......+ .+=|..||.+|-|.|.++-...- .++.| .
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~----G~---g~W~~I~~~~~~~~-~~RT~vdlKdRWrnllk~~~~~p--~~kr~----~ 94 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHL----GT---GRWRDVKFRAFENV-HHRTYVDLKDKWKTLVHTASIAP--QQRRG----A 94 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHH----SS---SCHHHHHHHHHSSS-CCCCHHHHHHHHHHHHHHHHSCT--TTCCC----S
T ss_pred CCCCCCCHHHHHHHHHHHHHH----CC---CChHHHHHHhcccc-CCCCHHHHHHHHHHHHhhccCCc--cccCC----C
Confidence 347799999999888888766 52 24655544332222 35578899888888865433221 12333 2
Q ss_pred CChhH--HHHHHHHHHhcCCC
Q 017042 239 SNPHE--QRAYDLSKKLWEGS 257 (378)
Q Consensus 239 ~~~HD--~~~feLSk~IWG~~ 257 (378)
..|.+ .+|+.+ ...||..
T Consensus 95 ~~p~e~~~~v~~~-h~~~g~~ 114 (122)
T 2roh_A 95 PVPQELLDRVLAA-QAYWSVD 114 (122)
T ss_dssp SCCHHHHHHHHHH-HHHHHSS
T ss_pred CCCHHHHHHHHHH-HHHHhhH
Confidence 33444 667664 5569876
No 8
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=48.59 E-value=5.1 Score=30.35 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=29.5
Q ss_pred ccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCC--CCCHHHHHHHHHHHH
Q 017042 160 FQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHG--DYTKAQLMDKIRRLK 219 (378)
Q Consensus 160 fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~--~~s~~QL~~KvRrLK 219 (378)
-.+-||++++-.||+|+-.| |. .|.. |.....| .=|.-.|.+|.|.|.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~----G~----~W~~----I~~~y~f~~~RT~VdLKdk~r~L~ 56 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTM----GN----HWNS----ILWSFPFQKGRRAVDLAHKYHRLI 56 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHH----CS----CHHH----HHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH----hH----hHHH----HHHhCCCccCcccchHHHHHHHHH
Confidence 35689999999999999877 63 3433 3332232 235555555555553
No 9
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=48.26 E-value=36 Score=27.31 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=38.3
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 017042 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVR 236 (378)
Q Consensus 159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p 236 (378)
.....||.+++..|+++|..|-..+ | ..| ..|...|. .=|..|+......|-.... .+..|.+|
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~---~-~rW----~~IA~~vp-GRT~~q~k~ry~~l~~dv~-----~iesg~vp 69 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDT---P-DRW----ANVARAVE-GRTPEEVKKHYEILVEDIK-----YIESGKVP 69 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTC---T-THH----HHHHHHST-TCCHHHHHHHHHHHHHHHH-----HHHHSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCC---C-chH----HHHHHHcC-CCCHHHHHHHHHHHHHHHH-----HhhcCCCC
Confidence 3456899999999999998774221 2 234 44444443 3467777665555543322 34678766
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=46.84 E-value=44 Score=25.57 Aligned_cols=54 Identities=7% Similarity=0.212 Sum_probs=35.4
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 017042 158 PLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLR 227 (378)
Q Consensus 158 ~~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~ 227 (378)
......||.+++..|+++|..|- . +....+..|...|. .=|..|+. .||..++.
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g----~----~~~~rW~~IA~~vp-GRT~~qcr-------~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYP----R----GSSDCWDKIARCVP-SKSKEDCI-------ARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSC----S----SSHHHHHHHGGGCS-SSCHHHHH-------HHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcC----C----CCCchHHHHHHHcC-CCCHHHHH-------HHHHHHHH
Confidence 34567899999999999998773 1 12345666766654 34555554 56666653
No 11
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=46.09 E-value=25 Score=27.20 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=26.1
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHh
Q 017042 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKN 200 (378)
Q Consensus 159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~ 200 (378)
.....||.+++..||++|..| | .+|..+..+|.+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~----G----~~W~~IA~~v~~ 49 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMY----K----DDWNKVSEHVGS 49 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHS----S----SCHHHHHHHHSS
T ss_pred ccCCCcCHHHHHHHHHHHHHh----C----CCHHHHHHHcCC
Confidence 355689999999999998766 5 578777776643
No 12
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=45.28 E-value=33 Score=26.13 Aligned_cols=61 Identities=18% Similarity=0.326 Sum_probs=39.1
Q ss_pred ccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 017042 160 FQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVR 236 (378)
Q Consensus 160 fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p 236 (378)
....||.++.-.|.++|+-|-. | .| ..|..+..+| + -|..|+..+...|.... .+..|.+|
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~--~-t~-~RW~~IA~~l-g-----Rt~~eV~~~y~~L~~d~------~~~~G~vp 67 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPG--G-TP-GRWEKIAHEL-G-----RSVTDVTTKAKQLKDSV------TCSPGMVS 67 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCT--T-CT-THHHHHHHHH-T-----SCHHHHHHHHHHHHHSC------CCCSCCCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCC--C-CC-cHHHHHHHHh-C-----CCHHHHHHHHHHHHHhc------CccCCCCC
Confidence 3568999999999999987731 2 12 2354444444 2 47888887777775542 13567766
No 13
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=44.86 E-value=58 Score=25.91 Aligned_cols=51 Identities=12% Similarity=0.355 Sum_probs=34.5
Q ss_pred ccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Q 017042 160 FQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCV 223 (378)
Q Consensus 160 fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~ 223 (378)
-...||.+++..||+++..| |. .|..+..+|. .=|..|+.++.+.|.++..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~----G~----~W~~Ia~~l~-----gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEY----GP----KWNKISKFLK-----NRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHT----CS----CHHHHHHHHS-----SSCHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHh----Cc----CHHHHHHHCC-----CCCHHHHHHHHHHHHhhHH
Confidence 35589999999998877665 62 5666555543 3477788777666665543
No 14
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=44.29 E-value=52 Score=27.05 Aligned_cols=72 Identities=10% Similarity=0.134 Sum_probs=46.7
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 017042 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTF 238 (378)
Q Consensus 159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p~f 238 (378)
.-...||++++-.|++++..| |. +|..+..+|.+ =+..| .+.||.+.+.-.++.| .|
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~----G~----~W~~Ia~~~~~-----Rt~~q-------cr~Rw~~~l~p~~~~~---~W 65 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQH----GS----DWKMIAATFPN-----RNARQ-------CRDRWKNYLAPSISHT---PW 65 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH----TT----CHHHHHHTCTT-----CCHHH-------HHHHHHHHTSTTSCCS---CC
T ss_pred CCCCCCCHHHHHHHHHHHHHh----CC----CHHHHHHHcCC-----CCHHH-------HHHHHhhhcccccccc---cC
Confidence 445689999988888888766 63 66655444322 23434 5667877764223333 47
Q ss_pred CChhHHHHHHHHHHh
Q 017042 239 SNPHEQRAYDLSKKL 253 (378)
Q Consensus 239 ~~~HD~~~feLSk~I 253 (378)
+..-|..|.+|-...
T Consensus 66 T~eEd~~L~~~v~~~ 80 (126)
T 3osg_A 66 TAEEDALLVQKIQEY 80 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888899888887654
No 15
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=42.42 E-value=56 Score=25.88 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=42.7
Q ss_pred cCCCCchhHHHHHHHHHHHH---------HhhCCCCCccHHHHH-HHHHhccCCCCCHHHHHHHHHHHHHHHH
Q 017042 161 QRLWSEDDEIIVLKRMIEYS---------TEKGIDPSQDTQAFY-DYVKNSLHGDYTKAQLMDKIRRLKKKCV 223 (378)
Q Consensus 161 qR~WS~eDEI~ILqgli~~~---------~~~G~~P~~D~~af~-~~ik~sL~~~~s~~QL~~KvRrLKkKY~ 223 (378)
--+|+++=|-.+++||.-|. ...|.+|-.+ .|+ +||.-.-...-+..|+..-|--||++..
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRN--elIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRN--ELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTH--HHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchh--HHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 45899999999999999997 2234444333 333 3555444456688999999888887754
No 16
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=41.48 E-value=52 Score=24.26 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=29.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCC-CCCHHHHHHHHHHHH
Q 017042 161 QRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHG-DYTKAQLMDKIRRLK 219 (378)
Q Consensus 161 qR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~-~~s~~QL~~KvRrLK 219 (378)
.+.||++++..|++++..| |. .+|..+..+ +.+ .=|..|+.++-+.|.
T Consensus 11 k~~WT~eED~~L~~~V~~~----G~---~~W~~Ia~~----~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKY----GE---GNWAAISKN----YPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHH----CT---TCHHHHHHH----SCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcc----CC---CchHHHHhh----cCCCCCCHHHHHHHHHHHh
Confidence 3579999999999888666 52 246554432 222 346777666555543
No 17
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=41.19 E-value=37 Score=25.91 Aligned_cols=52 Identities=13% Similarity=0.017 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Q 017042 167 DDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVN 224 (378)
Q Consensus 167 eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~ 224 (378)
.-|..||..|+.+. |..-.. ..|++.|-+. ...++.+.|..-|.|||+|...
T Consensus 25 ~~E~~lL~~L~~~~---g~~vsr--~~L~~~vw~~-~~~~~~~~l~~~I~rLRkkL~~ 76 (96)
T 3rjp_A 25 KREYDLLNILMTNM---NRVMTR--EELLSNVWKY-DEAVETNVVDVYIRYLRGKIDI 76 (96)
T ss_dssp HHHHHHHHHHHHTT---TSCBCH--HHHHHHHSSS-CSSCCTHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCC---CeeEcH--HHHHHHHcCC-CCCCCcchHHHHHHHHHHHhcc
Confidence 45899999998764 433333 3688887653 3456778999999999999863
No 18
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=40.62 E-value=57 Score=26.70 Aligned_cols=77 Identities=18% Similarity=0.362 Sum_probs=47.6
Q ss_pred CCcccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 017042 157 PPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVR 236 (378)
Q Consensus 157 ~~~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p 236 (378)
|......||.+++..|++++..| |. .+|..+..+|.+ -+..| .+.||.+.+...++.|
T Consensus 23 p~~~k~~Wt~eED~~L~~~v~~~----g~---~~W~~Ia~~l~~-----Rt~~q-------cr~Rw~~~l~p~~~~~--- 80 (128)
T 1h8a_C 23 PELNKGPWTKEEDQRVIEHVQKY----GP---KRWSDIAKHLKG-----RIGKQ-------CRERWHNHLNPEVKKT--- 80 (128)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHT----CS---CCHHHHHHHSSS-----CCHHH-------HHHHHHHTTCSSSCCS---
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----CC---CCHHHHHHHhcC-----CcHHH-------HHHHHHHhcccccccc---
Confidence 33445689999998888877655 52 356555554432 24444 4567877764222333
Q ss_pred CCCChhHHHHHHHHHHhcCC
Q 017042 237 TFSNPHEQRAYDLSKKLWEG 256 (378)
Q Consensus 237 ~f~~~HD~~~feLSk~IWG~ 256 (378)
.|+..-|..|.++-.. .|.
T Consensus 81 ~WT~eEd~~L~~~~~~-~G~ 99 (128)
T 1h8a_C 81 SWTEEEDRIIYQAHKR-LGN 99 (128)
T ss_dssp CCCHHHHHHHHHHHHH-HCS
T ss_pred cCCHHHHHHHHHHHHH-HCc
Confidence 3788888888888664 453
No 19
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=38.68 E-value=71 Score=24.96 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=33.0
Q ss_pred CCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q 017042 162 RLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKK 221 (378)
Q Consensus 162 R~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkK 221 (378)
|.||.+.+-.|++|+-.| |. ..|..+...-...| ..=|..||.+|-|.|.++
T Consensus 1 r~WT~eEd~~L~~gv~k~----G~---g~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHL----GT---GRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCCHHHHHHHHHHHHHH----CS---SCHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH----CC---CCcHHHHHhhcccc-CCCCHHHHHHHHHHHHHh
Confidence 579999999999888766 53 24544333211111 244778888888887553
No 20
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=38.50 E-value=1e+02 Score=25.24 Aligned_cols=51 Identities=12% Similarity=0.327 Sum_probs=33.2
Q ss_pred ccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Q 017042 160 FQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCV 223 (378)
Q Consensus 160 fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~ 223 (378)
....||.+++..||+++..| |. .|.. |...|. .=|..|+.++.+.|.+|+.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~----G~----~W~~----Ia~~l~-gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEY----GR----QWAI----IAKFFP-GRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHH----CS----CHHH----HHTTST-TCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHH----Cc----CHHH----HHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 34579999999999988776 52 3433 433332 4477777776666665543
No 21
>3kmi_A Putative membrane protein COG4129; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.96A {Clostridium difficile}
Probab=36.93 E-value=49 Score=29.28 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHhhCCCC-C-ccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Q 017042 168 DEIIVLKRMIEYSTEKGIDP-S-QDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNN 225 (378)
Q Consensus 168 DEI~ILqgli~~~~~~G~~P-~-~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~ 225 (378)
..+.||+.|..+...--..| + ..++.|+..+..+++..-+...|.++|..|+..|+..
T Consensus 83 ~Q~~iL~~m~~~i~~i~~~~~q~~~iA~~~~~~a~~~~e~n~a~~ll~~L~~l~~~fr~~ 142 (177)
T 3kmi_A 83 SQRDILENLYSYVSQLNSTPPQAHILSAFIHKIGYTEFEAETGNLLLEELKRLMISMKNQ 142 (177)
T ss_dssp HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHhcC
Confidence 45789999999886654444 2 4588999999999999999999999999999999865
No 22
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=36.29 E-value=26 Score=25.20 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=25.9
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHH
Q 017042 158 PLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVK 199 (378)
Q Consensus 158 ~~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik 199 (378)
|.+...||.+++..||+++..| | ..+|..+-.+|.
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~----G---~~~W~~IA~~~~ 40 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETL----G---LGNWADIADYVG 40 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHT----T---TTCHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHH----C---cCCHHHHHHHHC
Confidence 4667789999999999988665 5 246777666654
No 23
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=33.17 E-value=23 Score=27.48 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Q 017042 171 IVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKK 220 (378)
Q Consensus 171 ~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKk 220 (378)
.+|+.+++|...+-..+..|+.+ +|.+....++++|+.|-.
T Consensus 7 ~ll~~Fi~yIk~~Kvv~LedLA~---------~F~l~t~~~i~RI~~Le~ 47 (72)
T 1wi9_A 7 GFLTEFINYIKKSKVVLLEDLAF---------QMGLRTQDAINRIQDLLT 47 (72)
T ss_dssp CHHHHHHHHHHHCSEECHHHHHH---------HHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCeeeHHHHHH---------HhCCChHHHHHHHHHHHH
Confidence 47899999999988888777544 578899999999998843
No 24
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=33.04 E-value=43 Score=26.90 Aligned_cols=52 Identities=15% Similarity=0.074 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Q 017042 167 DDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVN 224 (378)
Q Consensus 167 eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~ 224 (378)
.-|..||.-|+.+. |..-.. ..|++.|-+. ....+.+.|.--|.|||+|...
T Consensus 39 ~~E~~lL~~L~~~~---g~vvsr--~~L~~~vW~~-~~~~~~~~l~~~I~rLRkkL~~ 90 (120)
T 2z9m_A 39 HREFELFHYLSKHM---GQVMTR--EHLLQTVWGY-DYFGDVRTVDVTIRRLREKIED 90 (120)
T ss_dssp HHHHHHHHHHHTTT---TCCEEH--HHHHHHHHCT-TCCSCTHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCC---CceEcH--HHHHHHHhCC-CCCCCcchHHHHHHHHHHHhhc
Confidence 46899999998764 443333 3788888764 3456778899999999999863
No 25
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=31.44 E-value=71 Score=26.17 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=33.3
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHH
Q 017042 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLH---GDYTKAQLMDKIRRLKKK 221 (378)
Q Consensus 159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~---~~~s~~QL~~KvRrLKkK 221 (378)
.-.+.||.+.+-.|++|+-.| |. ..|.. |...+. ..=|..||.+|-|.|.++
T Consensus 11 r~r~~WT~EEd~~L~~gV~k~----G~---g~W~~----I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQAVEKL----GT---GRWRD----VKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCSCCHHHHHHHHHHHHHH----CS---SSHHH----HHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHh----CC---CChHH----HHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 456789999999988888766 53 23433 333221 244677877777776543
No 26
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=31.41 E-value=1.4e+02 Score=25.11 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=48.9
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 017042 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTF 238 (378)
Q Consensus 159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p~f 238 (378)
.-.+.||.+.+-.|++|+-.| |. ..|..+...+...| .+=|..||.+|-|.|.++-. +-. .++.|. | +
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~----G~---G~W~~Ia~~~~~~f-~~RT~v~lKdRWrnllk~~~-~~p-~~krg~-~-~ 82 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHL----GT---GRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTAS-IAP-QQRRGE-P-V 82 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH----GG---GCHHHHHHHHCSCC-SSCCSHHHHHHHHHHHHHHH-TCS-TTCCCS-C-C
T ss_pred CCCCCCCHHHHHHHHHHHHHH----CC---CCHHHHHHHhcccc-CCCCHHHHHHHHHHHHhhhc-cCC-cccCCC-C-C
Confidence 457799999999999998877 41 24555444332212 24477888888888866422 111 223341 1 2
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 017042 239 SNPHEQRAYDLSKKLWEGS 257 (378)
Q Consensus 239 ~~~HD~~~feLSk~IWG~~ 257 (378)
...-+.+|+.|= ..||..
T Consensus 83 p~e~~~rv~~~h-~~~gn~ 100 (121)
T 2juh_A 83 PQDLLDRVLAAH-AYWSQQ 100 (121)
T ss_dssp CHHHHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHH-HHHccc
Confidence 333336666544 447653
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=29.31 E-value=85 Score=24.63 Aligned_cols=73 Identities=18% Similarity=0.343 Sum_probs=44.9
Q ss_pred cCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCC
Q 017042 161 QRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSN 240 (378)
Q Consensus 161 qR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p~f~~ 240 (378)
...||.+++-.|++++-.| |. .+|..+..+|. .-+..|+ +.||.+.+.-.++.| .|+.
T Consensus 4 k~~WT~eED~~L~~~v~~~----g~---~~W~~Ia~~l~-----~Rt~~qc-------r~Rw~~~l~p~~~~~---~Wt~ 61 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKY----GP---KRWSVIAKHLK-----GRIGKQC-------RERWHNHLNPEVKKT---SWTE 61 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHH----CT---TCHHHHHTTST-----TCCHHHH-------HHHHHHTTCCCCCCC---CCCH
T ss_pred CCCCCHHHHHHHHHHHHHh----CC---CcHHHHhhhhc-----CCCHHHH-------HHHHHhccCCccccc---CCCH
Confidence 4689999998888887665 52 34544433332 2345554 467777664222333 4788
Q ss_pred hhHHHHHHHHHHhcCC
Q 017042 241 PHEQRAYDLSKKLWEG 256 (378)
Q Consensus 241 ~HD~~~feLSk~IWG~ 256 (378)
.-|..|+++-.. .|.
T Consensus 62 eEd~~L~~~~~~-~G~ 76 (105)
T 1gv2_A 62 EEDRIIYQAHKR-LGN 76 (105)
T ss_dssp HHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHH-hCC
Confidence 888888887664 353
No 28
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=29.28 E-value=73 Score=25.80 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Q 017042 167 DDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVN 224 (378)
Q Consensus 167 eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~ 224 (378)
.-|..||..|+.+. |..-.. ..|++.|-+. ...++.+.|..-|.|||+|...
T Consensus 46 ~~E~~LL~~L~~~~---g~vvsr--e~L~~~vW~~-~~~~~~~tl~~~I~rLRkkL~~ 97 (121)
T 2hwv_A 46 HREFELLYYLAKHI---GQVMTR--EHLLQTVWGY-DYFGDVRTVDVTVRRLREKIED 97 (121)
T ss_dssp HHHHHHHHHHHHTT---TCCBCH--HHHHHHHTCG-GGTTCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcC---CeEEcH--HHHHHHHcCC-CCCCCccHHHHHHHHHHHHHhh
Confidence 56889999888764 443333 3688888654 2346788999999999999853
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=29.17 E-value=1.1e+02 Score=24.14 Aligned_cols=72 Identities=10% Similarity=0.191 Sum_probs=45.4
Q ss_pred CCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCh
Q 017042 162 RLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNP 241 (378)
Q Consensus 162 R~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p~f~~~ 241 (378)
..||.+++-.|++++..| |. .+|..+..+|.+ =+..|+ +.||.+.+.-.++.| .|+..
T Consensus 2 ~~Wt~eED~~L~~~v~~~----g~---~~W~~Ia~~~~~-----Rt~~qc-------r~Rw~~~L~p~i~~~---~WT~e 59 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRY----GA---KDWIRISQLMIT-----RNPRQC-------RERWNNYINPALRTD---PWSPE 59 (107)
T ss_dssp CSSCHHHHHHHHHHHHHH----CS---SCHHHHHHHTTT-----SCHHHH-------HHHHHHHSSSCCTTC---CCCHH
T ss_pred CCCCHHHHHHHHHHHHHH----CC---CCHHHHhhhcCC-----CCHHHH-------HHHHHHHHccccccc---ccCHH
Confidence 369999998888888766 42 467666555532 244444 457777664222333 37878
Q ss_pred hHHHHHHHHHHhcCC
Q 017042 242 HEQRAYDLSKKLWEG 256 (378)
Q Consensus 242 HD~~~feLSk~IWG~ 256 (378)
-|..|.+|-.. .|.
T Consensus 60 Ed~~L~~~~~~-~G~ 73 (107)
T 2k9n_A 60 EDMLLDQKYAE-YGP 73 (107)
T ss_dssp HHHHHHHHHHH-TCS
T ss_pred HHHHHHHHHHH-hCc
Confidence 88888887654 454
No 30
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=28.86 E-value=59 Score=25.02 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Q 017042 167 DDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVN 224 (378)
Q Consensus 167 eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~ 224 (378)
.-|..||..|+.+. |..-.. ..|++.|-+. ....+.+.|..-|.|||+|...
T Consensus 31 ~~e~~lL~~L~~~~---g~~vsr--~~L~~~vw~~-~~~~~~~~l~~~I~rLRkkL~~ 82 (102)
T 3zq7_A 31 PIEFRLLAVLLNNA---GKVLTQ--RQLLNQVWGP-NAVEHSHYLRIYMGHLRQKLEQ 82 (102)
T ss_dssp HHHHHHHHHHHHTT---TCEEEH--HHHHHHHTSS-SCSTTHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCC---CeeECH--HHHHHHhcCC-CCCCccchHHHHHHHHHHHhhc
Confidence 46889999998764 433232 3688887663 3446677899999999999864
No 31
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=28.85 E-value=67 Score=26.37 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=37.3
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Q 017042 166 EDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVN 224 (378)
Q Consensus 166 ~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~ 224 (378)
..-|..||..|+.+. |..-..+ .|++.|-+. ....+.+-|---|+|||+|...
T Consensus 38 t~~E~~lL~~L~~~~---g~vvsre--~L~~~vWg~-~~~~~~~~l~v~I~rLRkKL~~ 90 (120)
T 2zxj_A 38 THREFELFHYLSKHM---GQVMTRE--HLLQTVWGY-DYFGDVRTVDVTIRRLREKIED 90 (120)
T ss_dssp CHHHHHHHHHHHTTT---TCCBCHH--HHHHHHHCT-TCCSCTHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHhCC---CceEcHH--HHHHHhcCC-CCCCCCcChHHHHHHHHHHHhh
Confidence 456888998887654 6544444 788888764 3445556677789999999864
No 32
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=26.06 E-value=58 Score=23.93 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=33.0
Q ss_pred CCcccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHhh
Q 017042 157 PPLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHG-DYTKAQLMDKIRRLKKKCVNNLR 227 (378)
Q Consensus 157 ~~~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~-~~s~~QL~~KvRrLKkKY~~~~~ 227 (378)
|....+.||.+.+..|++++..| |. ..|..+..++ .+ .-+..| +|.||.+.+.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~----G~---~~W~~Ia~~~----~~~~Rt~~q-------cr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKY----GE---GNWSKILLHY----KFNNRTSVM-------LKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHH----CS---SCHHHHHHHS----CCSSCCHHH-------HHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----CC---CcHHHHHHHc----CcCCCCHHH-------HHHHHHHHcC
Confidence 33456789999999998888766 52 3565554443 32 334544 4566777664
No 33
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=25.68 E-value=75 Score=24.92 Aligned_cols=47 Identities=13% Similarity=0.266 Sum_probs=28.6
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 017042 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRL 218 (378)
Q Consensus 159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrL 218 (378)
.-...||.+++..||+++..| | ..|.. |...|. .=|..|+.++.+.|
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~----G----~~W~~----Ia~~l~-gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRL----G----NRWAE----IAKLLP-GRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHH----S----SCHHH----HHTTCT-TCCHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHh----C----CCHHH----HHHHcC-CCCHHHHHHHHHHH
Confidence 345589999999999987665 5 24543 333332 34666665544443
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=24.85 E-value=1.7e+02 Score=24.65 Aligned_cols=75 Identities=19% Similarity=0.356 Sum_probs=45.8
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Q 017042 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVRTF 238 (378)
Q Consensus 159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p~f 238 (378)
.....||.+++..|++++-.| |. .+|..+..+|. .-+..|+ |.||.+.+...++.| .|
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~----g~---~~W~~Ia~~l~-----~Rt~~qc-------r~Rw~~~l~p~~~~~---~W 113 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKY----GP---KRWSVIAKHLK-----GRIGKQC-------RERWHNHLNPEVKKT---SW 113 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH----CS---CCHHHHHHTST-----TCCHHHH-------HHHHHHTTCTTSCCS---CC
T ss_pred cCCCCCChHHHHHHHHHHHHh----Cc---ccHHHHHHHcC-----CCCHHHH-------HHHHHHHhCcccccc---CC
Confidence 345689999999888887655 52 34544433332 2344444 457777664222332 37
Q ss_pred CChhHHHHHHHHHHhcCC
Q 017042 239 SNPHEQRAYDLSKKLWEG 256 (378)
Q Consensus 239 ~~~HD~~~feLSk~IWG~ 256 (378)
+...|..|+++-.. .|.
T Consensus 114 T~eEd~~L~~~~~~-~g~ 130 (159)
T 1h89_C 114 TEEEDRIIYQAHKR-LGN 130 (159)
T ss_dssp CHHHHHHHHHHHHH-HCS
T ss_pred ChHHHHHHHHHHHH-HCC
Confidence 88888888888764 453
No 35
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=29.01 E-value=17 Score=28.08 Aligned_cols=53 Identities=21% Similarity=0.459 Sum_probs=35.3
Q ss_pred ccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Q 017042 160 FQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCV 223 (378)
Q Consensus 160 fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~ 223 (378)
.-=+||.+|.-.||.. .++.|..|. -|.+|...| +=|.+||.+.++-|-+=|.
T Consensus 13 ~vvlWTReeDR~IL~~----cq~~G~s~~-----tfa~iA~~L--nks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 13 IIILWTRNDDRVILLE----CQKRGPSSK-----TFAYLAAKL--DKNPNQVSERFQQLMKLFE 65 (70)
Confidence 4568999999998865 346786552 234455555 5678888877777655554
No 36
>2oku_A Acyl-COA dehydrogenase family protein; the acyl-COA dehydrogenase, PSI-2, structural genomics, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.48.5.1
Probab=22.41 E-value=90 Score=26.74 Aligned_cols=61 Identities=3% Similarity=0.121 Sum_probs=46.9
Q ss_pred HHHHHHHh-ccCCCCCHHH--HHHHHHHHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHhc
Q 017042 193 AFYDYVKN-SLHGDYTKAQ--LMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLW 254 (378)
Q Consensus 193 af~~~ik~-sL~~~~s~~Q--L~~KvRrLKkKY~~~~~~k~k~G~~p~f~~~HD~~~feLSk~IW 254 (378)
.++..|+. .+..+++..- |...|..|..+|...+. +.+......+..-|=++||++.-.|-
T Consensus 13 tyl~~irE~y~~~~~~~el~~l~~rl~k~~~~~ee~v~-~vke~~nqe~~Df~ARrLvemaa~ii 76 (131)
T 2oku_A 13 TYIARIREEYQQTEVKPELQPMKEALARMTDRAEALIA-FVTEQKDQELLDFQARRLVEMTAHAV 76 (131)
T ss_dssp HHHHHHHHTGGGCCCCGGGHHHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH-HHHhccChHHHHHHHHHHHHHHHHHH
Confidence 34567888 7777776544 88999999999999997 77766666666677788888877664
No 37
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=22.37 E-value=85 Score=24.65 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Q 017042 166 EDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCV 223 (378)
Q Consensus 166 ~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~ 223 (378)
..-|..||..|+.+. |..-.. ..|++.|-+. ....+.+.|..-|.|||+|..
T Consensus 36 t~~E~~lL~~L~~~~---g~~vsr--~~L~~~vW~~-~~~~~~~~l~~~I~rLRkkL~ 87 (110)
T 2pmu_A 36 SPTEFTLLRYFVINA---GTVLSK--PKILDHVWRY-DFGGDVNVVESYVSYLRRKID 87 (110)
T ss_dssp CHHHHHHHHHHHHTT---TSCBCH--HHHHHHHSCT-TCCSSSCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHCC---CEEEcH--HHHHHHHcCC-CCCCccchHHHHHHHHHHHhc
Confidence 456889999988764 443333 3678877553 234567788889999999875
No 38
>1sb0_B Protein C-MYB; CREB-binding protein, transcriptional activation, constitutive activation, LXXLL motif, KIX; NMR {Mus musculus} PDB: 2agh_A
Probab=22.19 E-value=50 Score=20.68 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 017042 345 KNLQVAQLKLFLQRNE 360 (378)
Q Consensus 345 KKqr~~Elel~LrR~d 360 (378)
|.+|++|+++.|+-.+
T Consensus 1 kEkriKElELLLMS~E 16 (26)
T 1sb0_B 1 KEKRIKELELLLMSTE 16 (26)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhhH
Confidence 3578999999887543
No 39
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=21.95 E-value=81 Score=24.51 Aligned_cols=53 Identities=17% Similarity=0.086 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Q 017042 166 EDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVN 224 (378)
Q Consensus 166 ~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~ 224 (378)
..-|..||..|+.+. |..-. ...|++.|-+. ....+.+.|..=|.|||+|...
T Consensus 33 t~~E~~lL~~L~~~~---g~vvs--r~~L~~~vW~~-~~~~~~~~l~~~I~rLRkkL~~ 85 (106)
T 1gxq_A 33 GPTEFKLLHFFMTHP---ERVYS--REQLLNHVWGT-NVYVEDRTVDVHIRRLRKALEP 85 (106)
T ss_dssp CHHHHHHHHHHHHSC---SSEEC--HHHHHHHHTCS-SSCCCTHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHCC---CeeEc--HHHHHHHHcCC-CCCCCcccHHHHHHHHHHHhcc
Confidence 356889999988764 43323 33788888654 3345788999999999999864
No 40
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=21.40 E-value=73 Score=25.27 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Q 017042 166 EDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCV 223 (378)
Q Consensus 166 ~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~ 223 (378)
..-|..||..|+.+. |..-.. ..|++.|-+. ....+.+.|..=|.|||+|..
T Consensus 30 t~~E~~lL~~L~~~~---g~vvsr--e~L~~~vW~~-~~~~~~~~l~~~I~rLRkkL~ 81 (112)
T 2jzy_A 30 TGKEYVLLELLLQRT---GEVLPR--SLISSLVWNM-NFDSDTNVIDVAVRRLRSKID 81 (112)
T ss_dssp CHHHHHHHHHHHHTT---TSCBCH--HHHHHHHTCC-CSSCSTTHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHCC---CceEcH--HHHHHHhcCC-CCCCCcchHHHHHHHHHHHhc
Confidence 367889999988764 543333 3788888654 234567788889999999874
No 41
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=21.14 E-value=53 Score=25.69 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Q 017042 167 DDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVN 224 (378)
Q Consensus 167 eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~ 224 (378)
.-|..||..|+.+. |..-. ...|++.|-+. ...++.+.|..-|.|||+|...
T Consensus 32 ~~E~~lL~~L~~~~---g~~vs--r~~L~~~vW~~-~~~~~~~~l~~~I~rLRkkL~~ 83 (109)
T 2hqn_A 32 GKPFEVLTHLARHR---DQIVS--KEQLLDAIWEE-PEMVTPNVIEVAINQIRQKMDK 83 (109)
T ss_dssp CSTHHHHHHHHHHT---CSEEE--HHHHHHHHCCS-CGGGCTTHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCC---CeeEc--HHHHHHHHcCC-CCCCCcchHHHHHHHHHHHhcc
Confidence 34788999988775 43222 33688877553 2345678899999999999753
No 42
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=20.54 E-value=73 Score=23.41 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=24.1
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHH
Q 017042 177 IEYSTEKGIDPSQDTQAFYDYVKNSLHGDYT-KAQLMDKIRRLKKK 221 (378)
Q Consensus 177 i~~~~~~G~~P~~D~~af~~~ik~sL~~~~s-~~QL~~KvRrLKkK 221 (378)
-+|.+.||+.|..+ -|..+.. ..++|.-.++||+.
T Consensus 18 ~~F~~~~GRkP~k~----------DIk~~p~~I~~~YK~Y~~Lk~~ 53 (56)
T 2kmu_A 18 RAFRRQRGRRPSQD----------DVEAAPEETRALYREYRTLKRT 53 (56)
T ss_dssp HHHHHHTCSCCCHH----------HHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHH----------HHHcCHHHHHHHHHHHHHHHhc
Confidence 47999999999754 1233444 67778777787754
No 43
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=20.54 E-value=68 Score=30.08 Aligned_cols=48 Identities=19% Similarity=0.499 Sum_probs=31.6
Q ss_pred cCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q 017042 161 QRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKK 221 (378)
Q Consensus 161 qR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkK 221 (378)
...||++.-..||+||..| | .||..+..+|... |..|+..-....|+|
T Consensus 133 s~~WTeEE~~lFleAl~kY----G----KDW~~IAk~VgTK-----T~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKY----G----RDFQAISDVIGNK-----SVVQVKNFFVNYRRR 180 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHH----S----SCHHHHHHHHSSC-----CHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHH----C----cCHHHHHHHcCCC-----CHHHHHHHHHHHHHH
Confidence 4479999999999999887 5 4676666665443 566665433333333
No 44
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=20.48 E-value=95 Score=24.84 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Q 017042 167 DDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVN 224 (378)
Q Consensus 167 eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~ 224 (378)
.-|..||..|+.+. |..-.. ..|++.|-+. ...++.+.|..-|.|||+|...
T Consensus 44 ~~E~~LL~~L~~~~---g~vvsr--e~L~~~vW~~-~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 44 RAEYEILSLLISKK---GYVFSR--ESIAIESESI-NPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp HHHHHHHHHHHHHC---CCEECH--HHHHHHTCCS-SCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CcEEcH--HHHHHHHcCC-CCCCchhHHHHHHHHHHHHhhc
Confidence 56889999988764 433233 3677777553 2356788999999999999864
Done!