Query 017042
Match_columns 378
No_of_seqs 135 out of 168
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 07:58:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017042.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017042hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cjja1 a.4.1.3 (A:8-70) Radia 83.5 1.5 0.00011 30.8 6.4 61 162-236 2-62 (63)
2 d2iw5b1 a.4.1.3 (B:376-440) RE 72.9 1.8 0.00013 30.4 4.0 49 162-223 6-54 (65)
3 d1w0ta_ a.4.1.4 (A:) DNA-bindi 68.8 3.9 0.00028 27.5 4.9 48 162-220 3-51 (52)
4 d1jhfa1 a.4.5.2 (A:2-72) LexA 68.4 6.1 0.00044 28.1 6.2 46 169-221 7-52 (71)
5 d2cqra1 a.4.1.3 (A:7-66) DnaJ 61.8 14 0.00098 25.1 6.8 52 158-218 9-60 (60)
6 d1w0ua_ a.4.1.4 (A:) Telomeric 51.7 14 0.0011 24.7 5.4 48 162-220 3-51 (55)
7 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 49.4 23 0.0017 24.0 6.4 42 162-216 3-44 (65)
8 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 45.8 13 0.00092 25.9 4.4 49 162-220 2-50 (59)
9 d1p2fa1 a.4.6.1 (A:121-217) Re 43.7 11 0.00081 27.4 4.1 55 163-225 24-78 (97)
10 d2okua1 a.48.5.1 (A:443-564) U 40.5 27 0.0019 27.6 6.0 61 193-254 13-76 (122)
11 d1f44a1 a.60.9.1 (A:20-129) Cr 40.1 34 0.0025 25.4 6.6 53 172-224 29-82 (110)
12 d1ys7a1 a.4.6.1 (A:128-233) Tr 36.4 20 0.0014 26.6 4.5 51 167-223 35-85 (106)
13 d1gxqa_ a.4.6.1 (A:) PhoB {Esc 35.4 17 0.0012 27.0 3.9 57 162-224 28-84 (105)
14 d1opca_ a.4.6.1 (A:) OmpR {Esc 34.4 11 0.00082 27.6 2.7 54 166-225 26-79 (99)
15 d1xc5a1 a.4.1.3 (A:413-480) Nu 33.4 18 0.0013 25.1 3.5 20 160-179 16-35 (68)
16 d2ckxa1 a.4.1.3 (A:578-660) Te 30.4 63 0.0046 23.0 6.4 49 162-218 1-49 (83)
17 d1ug2a_ a.4.1.3 (A:) 2610100b2 29.3 1.1E+02 0.0078 23.0 8.7 58 159-226 31-88 (95)
18 d1wi9a_ a.4.5.47 (A:) Hypothet 27.2 16 0.0012 26.6 2.3 39 172-219 8-46 (72)
19 d1mc0a2 d.110.2.1 (A:402-555) 26.4 13 0.00097 27.4 1.9 21 160-181 117-137 (154)
20 d1stza1 a.4.5.51 (A:14-100) He 26.4 43 0.0032 24.5 4.9 47 169-221 6-52 (87)
21 d1jt6a2 a.121.1.1 (A:73-187) M 26.2 1.2E+02 0.0087 22.7 7.7 50 172-227 6-56 (115)
22 d1x41a1 a.4.1.1 (A:8-54) Trans 24.9 17 0.0012 23.7 1.9 37 164-212 4-40 (47)
23 d1kgsa1 a.4.6.1 (A:124-225) Ph 21.0 27 0.002 25.6 2.7 52 166-223 30-81 (102)
24 d1a0pa1 a.60.9.1 (A:3-100) Rec 20.7 1.3E+02 0.0098 21.1 6.9 43 170-212 3-54 (98)
No 1
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=83.45 E-value=1.5 Score=30.81 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=39.8
Q ss_pred CCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 017042 162 RLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKSAKKGGVR 236 (378)
Q Consensus 162 R~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~~k~k~G~~p 236 (378)
+.||.++...|++++..|-. | .| ..+..|...|. .=|..|+......|..... ++.+|.+|
T Consensus 2 ~~WT~eEd~~L~~~v~~~~~--~-~~-----~~W~~Ia~~l~-gRt~~qc~~r~~~L~~dik-----~iesg~vp 62 (63)
T d2cjja1 2 RPWSAKENKAFERALAVYDK--D-TP-----DRWANVARAVE-GRTPEEVKKHYEILVEDIK-----YIESGKVP 62 (63)
T ss_dssp CSCCHHHHHHHHHHHHHSCT--T-CT-----THHHHHHHHST-TCCHHHHHHHHHHHHHHHH-----HHHHSSCC
T ss_pred cCCCHHHHHHHHHHHHHHCC--C-Cc-----hHHHHHHHHcC-CCCHHHHHHHHHHHHHHhh-----ccccCCCC
Confidence 56999999999999987731 1 11 23445555544 2378888877766655443 44678766
No 2
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.91 E-value=1.8 Score=30.37 Aligned_cols=49 Identities=18% Similarity=0.449 Sum_probs=35.4
Q ss_pred CCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Q 017042 162 RLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCV 223 (378)
Q Consensus 162 R~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~ 223 (378)
-.||+++...|++++..| | .||..+..+|.+ =|..|+......+++++.
T Consensus 6 ~~WT~eE~~~f~~~~~~~----G----~~w~~Ia~~~~~-----kt~~q~~~~y~~~~k~~~ 54 (65)
T d2iw5b1 6 ARWTTEEQLLAVQAIRKY----G----RDFQAISDVIGN-----KSVVQVKNFFVNYRRRFN 54 (65)
T ss_dssp SSCCHHHHHHHHHHHHHH----S----SCHHHHHHHHSS-----CCHHHHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHh----C----chHHHHHHHcCC-----CCHHHHHHHHHHHHhhcC
Confidence 359999999999998877 5 467676666644 477787777766665543
No 3
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.77 E-value=3.9 Score=27.53 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=33.1
Q ss_pred CCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Q 017042 162 RLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLH-GDYTKAQLMDKIRRLKK 220 (378)
Q Consensus 162 R~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~-~~~s~~QL~~KvRrLKk 220 (378)
+.||++++-.|++++..| |. .+|..+. ..+. .+-+..|+.++-+.|++
T Consensus 3 ~~WT~eED~~L~~~v~~~----G~---~~W~~I~----~~~~~~~Rt~~q~r~Rw~nl~K 51 (52)
T d1w0ta_ 3 QAWLWEEDKNLRSGVRKY----GE---GNWSKIL----LHYKFNNRTSVMLKDRWRTMKK 51 (52)
T ss_dssp CCCCHHHHHHHHHHHHHH----CT---TCHHHHH----HHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH----CC---CCHHHHH----hhcCCCCCCHHHHHHHHHHHHC
Confidence 579999999999888766 52 2454443 2333 34578899888888753
No 4
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=68.44 E-value=6.1 Score=28.12 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q 017042 169 EIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKK 221 (378)
Q Consensus 169 EI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkK 221 (378)
.-.||+-|..|..++|..|... -|...+.+. |.+.+..-|.+|.+|
T Consensus 7 Q~~vL~~I~~~~~~~G~~Ps~r------ei~~~~g~~-S~stv~~~l~~Le~k 52 (71)
T d1jhfa1 7 QQEVFDLIRDHISQTGMPPTRA------EIAQRLGFR-SPNAAEEHLKALARK 52 (71)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHH------HHHHHTTCS-SHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHH------HHHHHcCCC-CHHHHHHHHHHHHHC
Confidence 4679999999999999999733 233333333 888999999999765
No 5
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.79 E-value=14 Score=25.14 Aligned_cols=52 Identities=10% Similarity=0.287 Sum_probs=34.8
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 017042 158 PLFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRL 218 (378)
Q Consensus 158 ~~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrL 218 (378)
....+.||.++...|+++|..|- .. ....+..|...|. .=|..|+....+.|
T Consensus 9 ~~~~~~WT~eEd~~L~~~v~~~~----~~----~~~~W~~IA~~l~-~Rt~~qc~~R~~~L 60 (60)
T d2cqra1 9 RSAEEPWTQNQQKLLELALQQYP----RG----SSDCWDKIARCVP-SKSKEDCIARYKLL 60 (60)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSC----SS----SHHHHHHHGGGCS-SSCHHHHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHcC----Cc----cchHHHHHHHHcC-CCCHHHHHHHHHHC
Confidence 34566899999999999998773 21 1234566666554 45777777766554
No 6
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.70 E-value=14 Score=24.71 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=30.7
Q ss_pred CCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccC-CCCCHHHHHHHHHHHHH
Q 017042 162 RLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLH-GDYTKAQLMDKIRRLKK 220 (378)
Q Consensus 162 R~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~-~~~s~~QL~~KvRrLKk 220 (378)
+.||.+++-.||.++-.| |. .+|..+. ..+. ..-|..|+.++-|.|.+
T Consensus 3 ~~WT~eEd~~L~~~V~~~----G~---~~W~~I~----~~~~~~~Rt~~q~k~Rwrn~~k 51 (55)
T d1w0ua_ 3 QKWTVEESEWVKAGVQKY----GE---GNWAAIS----KNYPFVNRTAVMIKDRWRTMKR 51 (55)
T ss_dssp CCCCHHHHHHHHHHHHHH----CT---TCHHHHH----HHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh----CC---ChHHHHH----hhcCCCCcCHHHHHHHHHHHhc
Confidence 479999999999988666 62 2454433 2222 24577887777766643
No 7
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.38 E-value=23 Score=23.98 Aligned_cols=42 Identities=12% Similarity=0.250 Sum_probs=28.2
Q ss_pred CCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHH
Q 017042 162 RLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIR 216 (378)
Q Consensus 162 R~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvR 216 (378)
--||.+++..||+++..| | .+|..+-.+|.+ =|..|+..-..
T Consensus 3 ~~WT~eEd~~l~~~~~~~----G----~~W~~Ia~~~~~-----Rt~~q~k~ry~ 44 (65)
T d2cu7a1 3 VKWTIEEKELFEQGLAKF----G----RRWTKISKLIGS-----RTVLQVKSYAR 44 (65)
T ss_dssp CCCCHHHHHHHHHHHHHT----C----SCHHHHHHHHSS-----SCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh----c----chHHHHHHHcCC-----CCHHHHHHHHH
Confidence 459999999999998666 6 366665555433 36666655443
No 8
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.76 E-value=13 Score=25.93 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=33.7
Q ss_pred CCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Q 017042 162 RLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKK 220 (378)
Q Consensus 162 R~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKk 220 (378)
.-||.+|-..|-++|+-|=. | .| .-|....++| + =+..|++.+++.|+.
T Consensus 2 ~eWT~ee~~~le~Al~~~P~--g-t~-~RW~~IA~~v-g-----kt~~ev~~~~k~l~e 50 (59)
T d2cqqa1 2 PEWTEEDLSQLTRSMVKFPG--G-TP-GRWEKIAHEL-G-----RSVTDVTTKAKQLKD 50 (59)
T ss_dssp CCCCHHHHHHHHHHHHHSCT--T-CT-THHHHHHHHH-T-----SCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCC--C-Cc-HHHHHHHHHH-C-----CCHHHHHHHHHHHHH
Confidence 46999999999999998842 3 22 2354554454 2 478888888877764
No 9
>d1p2fa1 a.4.6.1 (A:121-217) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=43.73 E-value=11 Score=27.42 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=39.9
Q ss_pred CCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Q 017042 163 LWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNN 225 (378)
Q Consensus 163 ~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~ 225 (378)
+-=..-|..||..|+.+. |..-.. ..+++.|-+. +++.+-|..-|.|||+|+...
T Consensus 24 i~Lt~~E~~lL~~L~~~~---g~vvsr--~~l~~~vw~~---~~~~~~l~~~I~rLR~kl~~~ 78 (97)
T d1p2fa1 24 IHLPKKEFEILLFLAENA---GKVVTR--EKLLETFWED---PVSPRVVDTVIKRIRKAIEDD 78 (97)
T ss_dssp CCCCHHHHHHHHHHHHTT---TSCEEH--HHHHHHHCSS---CCCTHHHHHHHHHHHHHHCSS
T ss_pred EEcCHHHHHHHHHHhhhh---hhhhhh--hhhheeeeec---ccCCcccccHHHHHHHHHhhC
Confidence 334567999999998754 543333 3788888653 456788999999999998754
No 10
>d2okua1 a.48.5.1 (A:443-564) Uncharacterized protein PG0775 {Porphyromonas gingivalis [TaxId: 837]}
Probab=40.50 E-value=27 Score=27.65 Aligned_cols=61 Identities=3% Similarity=0.119 Sum_probs=48.1
Q ss_pred HHHHHHH-hccCCCCC--HHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHhc
Q 017042 193 AFYDYVK-NSLHGDYT--KAQLMDKIRRLKKKCVNNLRKSAKKGGVRTFSNPHEQRAYDLSKKLW 254 (378)
Q Consensus 193 af~~~ik-~sL~~~~s--~~QL~~KvRrLKkKY~~~~~~k~k~G~~p~f~~~HD~~~feLSk~IW 254 (378)
.++..|| ..-..+|+ ..-|.++|..|..||...+. +.+..+++.+-.-|=|+|++..-.|-
T Consensus 13 ty~~~ir~Eye~~~~~pEl~~lk~rl~~m~~r~ea~v~-~V~E~kdqel~Df~ARRLvEma~h~i 76 (122)
T d2okua1 13 TYIARIREEYQQTEVKPELQPMKEALARMTDRAEALIA-FVTEQKDQELLDFQARRLVEMTAHAV 76 (122)
T ss_dssp HHHHHHHHTGGGCCCCGGGHHHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 7888897 55557776 57899999999999999997 66766666666677888888876653
No 11
>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
Probab=40.11 E-value=34 Score=25.37 Aligned_cols=53 Identities=8% Similarity=0.045 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhCCCCC-ccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Q 017042 172 VLKRMIEYSTEKGIDPS-QDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVN 224 (378)
Q Consensus 172 ILqgli~~~~~~G~~P~-~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~ 224 (378)
-|..+++|...+|..|. .+...+..||.......++.+-|..+|-.||.-|..
T Consensus 29 dl~~f~~w~~~~~~~~l~~~~~~v~~yl~~l~~~g~s~sTi~R~lsair~f~r~ 82 (110)
T d1f44a1 29 VCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHRR 82 (110)
T ss_dssp HHHHHHHHHHHTTCCTTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccchhhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 46677888889998764 345556666655444678888888999999877653
No 12
>d1ys7a1 a.4.6.1 (A:128-233) Transcriptional regulatory protein PrrA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=36.37 E-value=20 Score=26.63 Aligned_cols=51 Identities=16% Similarity=0.010 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Q 017042 167 DDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCV 223 (378)
Q Consensus 167 eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~ 223 (378)
.-|..||..|+.+. |..-.. ..+++.|-+. ...++.+-|---|.|||+|+.
T Consensus 35 ~~E~~lL~~L~~~~---g~~vsr--~~L~~~vw~~-~~~~~~~~l~~~I~rLRkkl~ 85 (106)
T d1ys7a1 35 KREFDLLAVLAEHK---TAVLSR--AQLLELVWGY-DFAADTNVVDVFIGYLRRKLE 85 (106)
T ss_dssp HHHHHHHHHHHHTT---TCCBCH--HHHHHHHHCC-CCC-CCCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHhhhh---hhhhhH--HHHHhhhcCC-CCCCCchhHHHHHHHHHHHhc
Confidence 46889999988764 443333 3788888754 344555568888999999985
No 13
>d1gxqa_ a.4.6.1 (A:) PhoB {Escherichia coli [TaxId: 562]}
Probab=35.43 E-value=17 Score=27.03 Aligned_cols=57 Identities=18% Similarity=0.075 Sum_probs=40.3
Q ss_pred CCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Q 017042 162 RLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVN 224 (378)
Q Consensus 162 R~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~ 224 (378)
.+-=..-|..||..|+.+. |..-.. ..|++.|-+. ...++.+-|.--|+|||+|+..
T Consensus 28 ~i~Lt~~E~~lL~~L~~~~---g~vvsr--~~L~~~vw~~-~~~~~~~~l~~~I~rLRkKl~~ 84 (105)
T d1gxqa_ 28 PLEMGPTEFKLLHFFMTHP---ERVYSR--EQLLNHVWGT-NVYVEDRTVDVHIRRLRKALEP 84 (105)
T ss_dssp ECCCCHHHHHHHHHHHHSC---SSEECH--HHHHHHHTCS-SSCCCTHHHHHHHHHHHHHHGG
T ss_pred EEEccHHHHHHHHHHHhCc---cccccH--HHHhccccCC-CCCCCCcchHHHHHHHHHHhcc
Confidence 3444567999999988764 443333 3688888765 3456667788889999999864
No 14
>d1opca_ a.4.6.1 (A:) OmpR {Escherichia coli [TaxId: 562]}
Probab=34.39 E-value=11 Score=27.55 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=37.4
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Q 017042 166 EDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNN 225 (378)
Q Consensus 166 ~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~ 225 (378)
..-|..||..|+.+. |..-..+ .|++.|-+. ....+.+-|..-|.|||+|+...
T Consensus 26 t~~E~~lL~~L~~~~---g~~vsr~--~L~~~vwg~-~~~~~~~~l~~~I~rLRkkl~~~ 79 (99)
T d1opca_ 26 TSGEFAVLKALVSHP---REPLSRD--KLMNLARGR-EYSAMERSIDVQISRLRRMVEED 79 (99)
T ss_dssp CHHHHHHHHHHHHST---TCCEEHH--HHHHHHCCS-SSCTTSSCHHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHhcc---ceeccHH--HHHHHhcCC-ccccccccHHHHHHHHHHHHhhC
Confidence 566899999998775 5444434 688888653 23344455778899999998744
No 15
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.42 E-value=18 Score=25.10 Aligned_cols=20 Identities=15% Similarity=0.486 Sum_probs=16.5
Q ss_pred ccCCCCchhHHHHHHHHHHH
Q 017042 160 FQRLWSEDDEIIVLKRMIEY 179 (378)
Q Consensus 160 fqR~WS~eDEI~ILqgli~~ 179 (378)
....||.++...|++++..|
T Consensus 16 ~~~~WT~eE~~~f~~~~~~~ 35 (68)
T d1xc5a1 16 VMNMWSEQEKETFREKFMQH 35 (68)
T ss_dssp TTTCCCTTTHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 34569999999999998766
No 16
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=30.43 E-value=63 Score=23.03 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=30.5
Q ss_pred CCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 017042 162 RLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRL 218 (378)
Q Consensus 162 R~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrL 218 (378)
|.||.+++-.|+.|+-.| |.. .|..+...+. ....+-|..|+.++-|.|
T Consensus 1 r~WT~eEd~~L~~~V~~~----G~~---~W~~I~~~~~-~~~~~Rt~~qck~RWrn~ 49 (83)
T d2ckxa1 1 RPFSVAEVEALVEAVEHL----GTG---RWRDVKMRAF-DNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCCHHHHHHHHHHHHHH----CSS---CHHHHHHHHC-TTCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH----Ccc---cHHHHHHHHH-hhccCCCHHHHHHHHHHH
Confidence 789999998888887655 532 3544322211 111345788888877775
No 17
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.31 E-value=1.1e+02 Score=22.96 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=38.7
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh
Q 017042 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNL 226 (378)
Q Consensus 159 ~fqR~WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~ 226 (378)
.....||.++.-.||+.+ +++|..+ .-|..+-.+|.+ =+-+||.+..+.|-+.|....
T Consensus 31 ~~~~~WTrEEDriIL~~~----q~~G~~~-~tw~~Ia~~L~~-----Rs~~qvr~Rf~~Lm~lf~~~~ 88 (95)
T d1ug2a_ 31 EKVVLWTREADRVILTMC----QEQGAQP-HTFSVISQQLGN-----KTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCCSSSCHHHHHHHHHHH----HHTTSCT-TTHHHHHHHHSS-----CCHHHHHHHHHHHHHHHHHCS
T ss_pred CccCCcCHHHHHHHHHHH----HHcCCcH-HHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHHhh
Confidence 456789999998888764 4667222 224333333433 377899999888988888654
No 18
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.21 E-value=16 Score=26.57 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Q 017042 172 VLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLK 219 (378)
Q Consensus 172 ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLK 219 (378)
+|+.+|+|...+-..+..|+.+ +|++...+.+++|+.|-
T Consensus 8 lL~~FI~~Ik~~Kvv~LedLAa---------~F~lktqd~i~RIq~Le 46 (72)
T d1wi9a_ 8 FLTEFINYIKKSKVVLLEDLAF---------QMGLRTQDAINRIQDLL 46 (72)
T ss_dssp HHHHHHHHHHHCSEECHHHHHH---------HHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEeeHHHHHH---------HcCCcHHHHHHHHHHHH
Confidence 7888888888888777777544 57888888888888773
No 19
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.41 E-value=13 Score=27.40 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=16.7
Q ss_pred ccCCCCchhHHHHHHHHHHHHH
Q 017042 160 FQRLWSEDDEIIVLKRMIEYST 181 (378)
Q Consensus 160 fqR~WS~eDEI~ILqgli~~~~ 181 (378)
..+.|+++| |.||+.|+.+.+
T Consensus 117 ~~~~f~~~d-~~ll~~la~q~a 137 (154)
T d1mc0a2 117 NGPWFSKFD-EDLATAFSIYCG 137 (154)
T ss_dssp TSSSCCHHH-HHHHHHHHHHHH
T ss_pred ccccccHHH-HHHHHHHHHHHH
Confidence 356788765 999999999873
No 20
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=26.40 E-value=43 Score=24.51 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q 017042 169 EIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKK 221 (378)
Q Consensus 169 EI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkK 221 (378)
...||..|+++-..+|..|..- .|...+.+.+|..-+..=|..|.++
T Consensus 6 q~~IL~~Ive~y~~~g~Pv~s~------~i~~~~~l~~S~aTIRn~m~~LE~~ 52 (87)
T d1stza1 6 QRKVLYCIVREYIENKKPVSSQ------RVLEVSNIEFSSATIRNDMKKLEYL 52 (87)
T ss_dssp HHHHHHHHHHHHHHHCSCBCHH------HHHHHSCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCccCHH------HHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 4579999999999999777643 4666677889999999888888664
No 21
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=26.22 E-value=1.2e+02 Score=22.73 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhC-CCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 017042 172 VLKRMIEYSTEKG-IDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLR 227 (378)
Q Consensus 172 ILqgli~~~~~~G-~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~~~~~ 227 (378)
=|=||+.|...+- ..|...+.. ++. ....-...+..+|++|+++|.....
T Consensus 6 klyg~a~~~~~~~~~~Pl~~a~~--EF~----~~~~~~~e~~~~i~~lr~~y~~~~~ 56 (115)
T d1jt6a2 6 KFYLYNELSLTTEYYYPLQNAII--EFY----TEYYKTNSINEKMNKLENKYIDAYH 56 (115)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHH--HHH----TTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHhcCHHHHHHH--HHH----HhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3667887655432 155544322 222 2233345889999999999999776
No 22
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.88 E-value=17 Score=23.65 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=26.0
Q ss_pred CCchhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHH
Q 017042 164 WSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLM 212 (378)
Q Consensus 164 WS~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~ 212 (378)
||.+++..||+++..| | ..+|...-.+|.++ |..|..
T Consensus 4 Wt~eEd~~L~~~v~~~----G---~~nW~~Ia~~~~~R-----t~~Qcr 40 (47)
T d1x41a1 4 WTAQEEMALLEAVMDC----G---FGNWQDVANQMCTK-----TKEECE 40 (47)
T ss_dssp SCHHHHHHHHHHHHHT----C---TTCHHHHHHHHTTS-----CHHHHH
T ss_pred CCHHHHHHHHHHHHHH----C---CccHHHHHHHcCCC-----CHHHHH
Confidence 9999999999998654 5 34676666666543 555554
No 23
>d1kgsa1 a.4.6.1 (A:124-225) PhoB {Thermotoga maritima [TaxId: 2336]}
Probab=21.05 E-value=27 Score=25.59 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Q 017042 166 EDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCV 223 (378)
Q Consensus 166 ~eDEI~ILqgli~~~~~~G~~P~~D~~af~~~ik~sL~~~~s~~QL~~KvRrLKkKY~ 223 (378)
..-|..||.-|+.+. |..-..+ .+++.|-+. ...++.+-|.--|.|||+|..
T Consensus 30 t~~E~~lL~~L~~~~---g~vvs~~--~l~~~vw~~-~~~~~~~~l~~~I~rLRkkL~ 81 (102)
T d1kgsa1 30 TKKEYQILEYLVMNK---NRVVTKE--ELQEHLWSF-DDEVFSDVLRSHIKNLRKKVD 81 (102)
T ss_dssp CHHHHHHHHHHHHTT---TSCEEHH--HHHHHCC------CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc---ccccCHH--HHHHhhcCC-CcccchhHHHHHHHHHHHHhh
Confidence 345788998888764 4433333 566666542 234455567777999999975
No 24
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=20.72 E-value=1.3e+02 Score=21.10 Aligned_cols=43 Identities=12% Similarity=0.270 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHH-hhCCCC------CccHHHHHHHHHhc-cC-CCCCHHHHH
Q 017042 170 IIVLKRMIEYST-EKGIDP------SQDTQAFYDYVKNS-LH-GDYTKAQLM 212 (378)
Q Consensus 170 I~ILqgli~~~~-~~G~~P------~~D~~af~~~ik~s-L~-~~~s~~QL~ 212 (378)
+..|+.+++|-. ++|.+| ..|+..|+.++... ++ .+++..+|.
T Consensus 3 ~~~ie~fl~~l~~erg~S~~Ti~aY~~dl~~f~~~l~~~~~~~~~i~~~~i~ 54 (98)
T d1a0pa1 3 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQ 54 (98)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHH
Confidence 455667777765 356666 24666666666543 22 345555553
Done!