BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017043
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AEZ|C Chain C, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|F Chain F, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|I Chain I, Crystal Structure Of Mitotic Checkpoint Complex
Length = 223
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 4/179 (2%)
Query: 22 KENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDKYEG-DDPLQPWLECI 80
KEN+ P K G + L + + +++ L R I+ E DDPLQ W++ I
Sbjct: 20 KENIEPRKAGHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVWIDYI 79
Query: 81 KWVQEAFPAG-GDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQV-IFS 138
KW + FP G +SGLV + E+C R F + YKDD+RYL +W++Y N ID V +FS
Sbjct: 80 KWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYV-NYIDEPVELFS 138
Query: 139 FLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVR 197
FL + IG+ S++Y YA + ES+ + A++++ G A+P + + Y++F R
Sbjct: 139 FLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197
>pdb|3SI5|A Chain A, Kinetochore-Bubr1 Kinase Complex
pdb|3SI5|B Chain B, Kinetochore-Bubr1 Kinase Complex
Length = 176
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 76/139 (54%)
Query: 64 IDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVW 123
I Y G+DPL W I W ++ +P GG S + + E+ V + Y D R+LN+W
Sbjct: 22 IRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLW 81
Query: 124 LEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183
L+ C + ++S+L IG + + +YI++A E++ + A+ +F GI + A+P
Sbjct: 82 LKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 141
Query: 184 TEKLKDAYKKFLVRSMRKT 202
E+L+ +++F R R+T
Sbjct: 142 LERLQSQHRQFQARVSRQT 160
>pdb|2WVI|A Chain A, Crystal Structure Of The N-Terminal Domain Of Bubr1
Length = 164
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 76/139 (54%)
Query: 64 IDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVW 123
I Y G+DPL W I W ++ +P GG S + + E+ V + Y D R+LN+W
Sbjct: 10 IRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLW 69
Query: 124 LEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183
L+ C + ++S+L IG + + +YI++A E++ + A+ +F GI + A+P
Sbjct: 70 LKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129
Query: 184 TEKLKDAYKKFLVRSMRKT 202
E+L+ +++F R R+T
Sbjct: 130 LERLQSQHRQFQARVSRQT 148
>pdb|4A1G|A Chain A, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|B Chain B, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|C Chain C, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|D Chain D, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
Length = 152
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 55 DNRRRLIEA-IDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCY 113
+N +++EA + Y+G+DPL W I+WV+E FP + L+ + E ++ F + Y
Sbjct: 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEY--LITLLEHLMKEFLDKKKY 64
Query: 114 KDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLF 173
+D R+++ L++AE D F FL + IG S YIA+A H+E++ +++ A+ +
Sbjct: 65 HNDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVL 124
Query: 174 SLGISRNAQPTEKLKDAYKKFLVR 197
GI A+P E L+ Y+ F R
Sbjct: 125 QRGIQNQAEPREFLQQQYRLFQTR 148
>pdb|2LAH|A Chain A, Solution Nmr Structure Of Mitotic Checkpoint
SerineTHREONINE-Protein Kinase Bub1 N-Terminal Domain
From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr5460a (Methods Development)
Length = 160
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 55 DNRRRLIEA-IDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCY 113
+N +++EA + Y+G+DPL W I+WV+E FP + L+ + E ++ F + Y
Sbjct: 15 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEY--LITLLEHLMKEFLDKKKY 72
Query: 114 KDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLF 173
+D R+++ L++AE D F FL + IG S YIA+A H+E++ +++ A+ +
Sbjct: 73 HNDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVL 132
Query: 174 SLGISRNAQPTEKLKDAYKKFLVR 197
GI A+P E L+ Y+ F R
Sbjct: 133 QRGIQNQAEPREFLQQQYRLFQTR 156
>pdb|3ESL|A Chain A, Crystal Structure Of The Conserved N-Terminal Domain Of
The Mitotic Checkpoint Component Bub1
pdb|3ESL|B Chain B, Crystal Structure Of The Conserved N-Terminal Domain Of
The Mitotic Checkpoint Component Bub1
Length = 202
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 70 DDPLQPWLECIKWVQEAFPAGGDSSGLVVI---YEQCVRRFWHSQCYKDDLRYLNVWLEY 126
DDPL +L+ + W+ ++ SG V+ E+C+ + Y++D R+L +W+ Y
Sbjct: 27 DDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86
Query: 127 -----AENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181
+ N +++ F ++ IG S++Y ++ +E+ A L LG N
Sbjct: 87 INLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146
Query: 182 QPTEKL 187
+P +L
Sbjct: 147 RPYNRL 152
>pdb|4GGD|C Chain C, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|D Chain D, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 23
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 16 NEWELFKENVRPLKRGRNIRLL 37
+EWEL KENV+PL++GR + L
Sbjct: 1 DEWELSKENVQPLRQGRIMSTL 22
>pdb|2ZKR|TT Chain t, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 145
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 132 DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGI--SRNAQPTEKLKD 189
+ QV+ IGK VY Y +++E + KA +GI S+ KL
Sbjct: 54 EVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDK 113
Query: 190 AYKKFLVRSMRKTQVIDEDSK 210
KK L R + QV E K
Sbjct: 114 DRKKILERKAKSRQVGKEKGK 134
>pdb|1BWV|A Chain A, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|C Chain C, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|E Chain E, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|G Chain G, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
Length = 493
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 222 VLAREENRRQAMQSSDMQRKKLKPDGNHRAPFSVYKDTNVDITSCHQPDNSKT 274
+LAR ENR + ++ R+ K G R ++KD + TS D +T
Sbjct: 436 ILARNENRDYLTEGPEILREAAKTCGALRTALDLWKDITFNYTSTDTSDFVET 488
>pdb|1IWA|A Chain A, Rubisco From Galdieria Partita
pdb|1IWA|C Chain C, Rubisco From Galdieria Partita
pdb|1IWA|E Chain E, Rubisco From Galdieria Partita
pdb|1IWA|G Chain G, Rubisco From Galdieria Partita
pdb|1IWA|I Chain I, Rubisco From Galdieria Partita
pdb|1IWA|K Chain K, Rubisco From Galdieria Partita
pdb|1IWA|M Chain M, Rubisco From Galdieria Partita
pdb|1IWA|O Chain O, Rubisco From Galdieria Partita
Length = 493
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 222 VLAREENRRQAMQSSDMQRKKLKPDGNHRAPFSVYKDTNVDITSCHQPDNSKT 274
+LAR ENR + ++ R+ K G R ++KD + TS D +T
Sbjct: 436 ILARNENRDYLTEGPEILREAAKTCGALRTALDLWKDITFNYTSTDTSDFVET 488
>pdb|4F0H|A Chain A, Unactivated Rubisco With Oxygen Bound
pdb|4F0K|A Chain A, Unactivated Rubisco With Magnesium And Carbon Dioxide
Bound
pdb|4F0M|A Chain A, Unactivated Rubisco With Magnesium And A Water Molecule
Bound
Length = 493
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 222 VLAREENRRQAMQSSDMQRKKLKPDGNHRAPFSVYKDTNVDITSCHQPDNSKT 274
+LAR ENR + ++ R+ K G R ++KD + TS D +T
Sbjct: 436 ILARNENRDFLTEGPEILREAAKNXGALRTALDLWKDITFNYTSTDTSDFVET 488
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 84/216 (38%), Gaps = 20/216 (9%)
Query: 124 LEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183
+E A+ ++ + I L GKT YIA H++ K K + L +++
Sbjct: 13 MEVAQPALEGKNIIICLPTG-CGKTRVAVYIAKD-HLDKKKKASEPGKVIVL-VNKVLLV 69
Query: 184 TEKLKDAYKKFLVRSMRKTQVIDEDSKENHLP--VRSFGTVLAREENRRQAMQSSDMQRK 241
+ + ++ FL + R + + + P V+S +++ Q +++S + +
Sbjct: 70 EQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTA----QILENSLLNLE 125
Query: 242 KLKPDGNHRAPFSVYKDTNVDITSCHQPDNSKTECNSWLTLGAQAERNKENNAKPAKWTS 301
+ G + FS+ + I CH + N Q +N N K
Sbjct: 126 NGEDAGVQLSDFSL-----IIIDECHHTNKEAVYNNIMRHYLMQKLKN--NRLKKENKPV 178
Query: 302 CKIPQRPG----PGVGGATTSDHIEVFIDEECAETD 333
+PQ G PGVGGAT E I + CA D
Sbjct: 179 IPLPQILGLTASPGVGGATKQAKAEEHILKLCANLD 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,142,628
Number of Sequences: 62578
Number of extensions: 511671
Number of successful extensions: 1272
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 16
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)