Query 017043
Match_columns 378
No_of_seqs 189 out of 291
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:06:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00777 Mad3_BUB1_I Mad3/BU 100.0 2.6E-49 5.6E-54 341.4 13.8 122 55-176 3-125 (125)
2 PF08311 Mad3_BUB1_I: Mad3/BUB 100.0 2.7E-45 5.9E-50 317.1 13.5 125 53-177 1-126 (126)
3 KOG1166 Mitotic checkpoint ser 100.0 3.2E-32 6.9E-37 297.1 20.5 156 49-204 10-168 (974)
4 PF15297 CKAP2_C: Cytoskeleton 96.3 0.023 4.9E-07 57.3 9.7 75 123-197 109-187 (353)
5 KOG1915 Cell cycle control pro 96.3 0.036 7.8E-07 58.1 11.2 122 70-198 317-450 (677)
6 KOG1915 Cell cycle control pro 96.2 0.042 9E-07 57.6 10.8 127 54-199 56-188 (677)
7 KOG2047 mRNA splicing factor [ 94.6 0.22 4.7E-06 54.0 9.9 146 53-202 118-302 (835)
8 PF05843 Suf: Suppressor of fo 93.6 0.44 9.5E-06 46.4 9.4 110 75-199 3-121 (280)
9 PF05843 Suf: Suppressor of fo 93.4 0.45 9.8E-06 46.3 9.1 127 53-199 17-151 (280)
10 PF02631 RecX: RecX family; I 91.9 1.8 3.8E-05 36.7 9.7 91 96-197 11-104 (121)
11 KOG2396 HAT (Half-A-TPR) repea 91.8 1.6 3.4E-05 46.4 11.0 132 50-195 30-184 (568)
12 KOG1914 mRNA cleavage and poly 91.1 0.48 1E-05 50.6 6.4 117 73-200 237-381 (656)
13 KOG1258 mRNA processing protei 89.9 2.1 4.6E-05 46.0 10.0 111 73-197 297-412 (577)
14 PF08424 NRDE-2: NRDE-2, neces 89.8 7.9 0.00017 38.5 13.6 126 32-181 49-185 (321)
15 PRK14136 recX recombination re 89.4 3.8 8.2E-05 41.0 10.7 73 96-177 196-268 (309)
16 COG5107 RNA14 Pre-mRNA 3'-end 89.2 1.6 3.5E-05 46.0 8.2 94 96-199 95-210 (660)
17 KOG2047 mRNA splicing factor [ 89.1 0.72 1.6E-05 50.2 5.8 126 52-183 402-544 (835)
18 KOG1070 rRNA processing protei 86.7 5 0.00011 47.3 10.8 110 73-198 1458-1577(1710)
19 KOG1914 mRNA cleavage and poly 84.8 4.3 9.3E-05 43.6 8.6 110 74-197 54-184 (656)
20 KOG0495 HAT repeat protein [RN 83.8 3 6.4E-05 45.8 7.0 94 73-183 651-752 (913)
21 PF13429 TPR_15: Tetratricopep 82.5 3 6.6E-05 39.7 6.0 96 75-182 80-178 (280)
22 PF07719 TPR_2: Tetratricopept 82.2 3.4 7.5E-05 26.1 4.4 31 150-180 1-31 (34)
23 PF08171 Mad3_BUB1_II: Mad3/BU 81.1 0.65 1.4E-05 36.4 0.7 43 320-366 1-53 (68)
24 PF13428 TPR_14: Tetratricopep 80.2 3.1 6.7E-05 28.7 3.9 31 152-182 3-33 (44)
25 PRK14134 recX recombination re 79.8 15 0.00032 36.2 9.9 94 96-197 95-191 (283)
26 PF13181 TPR_8: Tetratricopept 79.1 4.9 0.00011 25.6 4.4 31 150-180 1-31 (34)
27 PF12895 Apc3: Anaphase-promot 77.0 12 0.00026 29.0 6.8 73 96-175 8-83 (84)
28 smart00028 TPR Tetratricopepti 75.7 4.3 9.4E-05 23.4 3.2 29 151-179 2-30 (34)
29 smart00745 MIT Microtubule Int 74.4 19 0.00041 27.9 7.3 53 148-200 6-67 (77)
30 KOG1258 mRNA processing protei 74.4 8.8 0.00019 41.4 7.0 91 60-162 102-198 (577)
31 cd02682 MIT_AAA_Arch MIT: doma 74.1 17 0.00036 29.1 6.9 45 148-192 4-53 (75)
32 PF13176 TPR_7: Tetratricopept 73.0 4 8.7E-05 27.1 2.7 25 153-177 2-26 (36)
33 PRK14135 recX recombination re 72.6 37 0.0008 32.5 10.4 54 98-152 89-144 (263)
34 PRK00117 recX recombination re 71.6 48 0.001 29.2 10.1 50 97-151 46-96 (157)
35 COG5191 Uncharacterized conser 69.1 11 0.00025 38.2 6.0 131 51-195 31-186 (435)
36 PF13414 TPR_11: TPR repeat; P 68.5 8.1 0.00017 28.4 3.8 32 150-181 3-34 (69)
37 cd02656 MIT MIT: domain contai 67.5 29 0.00063 26.8 7.0 45 148-192 4-53 (75)
38 KOG1166 Mitotic checkpoint ser 67.0 38 0.00082 39.1 10.3 118 66-197 8-126 (974)
39 KOG1070 rRNA processing protei 65.4 82 0.0018 37.8 12.5 155 27-199 1437-1607(1710)
40 cd02683 MIT_1 MIT: domain cont 63.6 37 0.0008 26.9 6.9 46 147-192 3-53 (77)
41 cd02681 MIT_calpain7_1 MIT: do 63.5 38 0.00082 27.0 6.9 53 148-200 4-66 (76)
42 PF13432 TPR_16: Tetratricopep 63.0 30 0.00066 25.0 6.0 50 129-180 12-61 (65)
43 PF00515 TPR_1: Tetratricopept 62.2 21 0.00045 22.6 4.4 31 150-180 1-31 (34)
44 PF05596 Taeniidae_ag: Taeniid 62.1 18 0.00038 28.1 4.6 45 135-179 18-63 (64)
45 PF04212 MIT: MIT (microtubule 61.1 17 0.00038 27.6 4.5 31 148-178 3-33 (69)
46 PRK14137 recX recombination re 60.1 72 0.0016 29.8 9.3 73 96-178 74-146 (195)
47 TIGR02795 tol_pal_ybgF tol-pal 59.4 84 0.0018 24.7 8.6 86 96-182 21-108 (119)
48 smart00386 HAT HAT (Half-A-TPR 59.3 18 0.00039 22.0 3.7 31 164-195 1-31 (33)
49 PF13374 TPR_10: Tetratricopep 56.5 28 0.0006 22.5 4.4 31 150-180 2-32 (42)
50 PF13371 TPR_9: Tetratricopept 56.3 38 0.00083 24.9 5.7 52 133-186 14-65 (73)
51 PRK15359 type III secretion sy 56.0 26 0.00056 30.4 5.3 65 116-182 54-124 (144)
52 KOG1840 Kinesin light chain [C 55.8 52 0.0011 35.3 8.5 101 91-192 297-420 (508)
53 PF13424 TPR_12: Tetratricopep 54.9 28 0.0006 26.2 4.7 32 148-179 3-34 (78)
54 cd02678 MIT_VPS4 MIT: domain c 54.1 63 0.0014 25.1 6.7 51 149-199 5-64 (75)
55 cd00189 TPR Tetratricopeptide 53.6 75 0.0016 22.3 8.0 49 130-180 50-98 (100)
56 smart00299 CLH Clathrin heavy 51.0 48 0.001 28.0 6.1 25 152-176 84-108 (140)
57 PRK15179 Vi polysaccharide bio 47.5 4.4E+02 0.0095 29.4 14.3 92 96-189 136-227 (694)
58 cd02684 MIT_2 MIT: domain cont 46.9 72 0.0016 25.1 6.0 51 150-200 6-65 (75)
59 PF12688 TPR_5: Tetratrico pep 45.8 1.6E+02 0.0035 25.2 8.5 63 132-196 19-82 (120)
60 TIGR02552 LcrH_SycD type III s 44.9 1.1E+02 0.0024 25.1 7.3 49 131-181 68-116 (135)
61 TIGR00540 hemY_coli hemY prote 44.9 2.7E+02 0.0058 28.3 11.4 78 94-178 316-398 (409)
62 KOG0307 Vesicle coat complex C 44.6 1.4E+02 0.003 34.8 9.9 105 59-175 572-690 (1049)
63 PRK15179 Vi polysaccharide bio 43.9 1.5E+02 0.0033 33.0 10.0 82 93-185 102-189 (694)
64 PF13424 TPR_12: Tetratricopep 43.5 1.4E+02 0.0029 22.3 7.4 31 148-178 44-74 (78)
65 KOG0890 Protein kinase of the 43.4 39 0.00085 42.1 5.6 63 116-179 1666-1731(2382)
66 PF13174 TPR_6: Tetratricopept 43.3 37 0.0008 20.9 3.2 28 150-179 2-29 (33)
67 KOG0495 HAT repeat protein [RN 43.1 25 0.00055 38.9 3.7 71 121-191 652-728 (913)
68 PF13414 TPR_11: TPR repeat; P 42.9 80 0.0017 22.9 5.5 45 133-179 22-67 (69)
69 PRK14720 transcript cleavage f 41.3 68 0.0015 36.9 6.9 94 96-192 168-268 (906)
70 PRK15359 type III secretion sy 39.9 2.1E+02 0.0046 24.6 8.5 52 129-182 39-90 (144)
71 cd02679 MIT_spastin MIT: domai 39.7 51 0.0011 26.5 4.2 32 147-178 5-36 (79)
72 PF07064 RIC1: RIC1; InterPro 39.5 3.7E+02 0.008 26.2 13.1 92 71-180 138-234 (258)
73 PF09976 TPR_21: Tetratricopep 38.4 2.5E+02 0.0054 23.9 12.3 47 131-177 99-145 (145)
74 PRK09857 putative transposase; 38.0 1.7E+02 0.0037 28.9 8.4 80 95-179 187-269 (292)
75 PRK11189 lipoprotein NlpI; Pro 37.6 3.3E+02 0.0072 26.3 10.4 52 146-199 232-283 (296)
76 TIGR02552 LcrH_SycD type III s 37.5 92 0.002 25.6 5.7 52 129-182 32-83 (135)
77 PRK15363 pathogenicity island 35.7 63 0.0014 29.4 4.6 48 131-180 86-133 (157)
78 COG2956 Predicted N-acetylgluc 35.1 58 0.0013 33.3 4.6 45 138-182 168-212 (389)
79 COG2137 OraA Uncharacterized p 34.6 99 0.0021 28.5 5.7 90 96-196 54-148 (174)
80 PRK15331 chaperone protein Sic 34.0 74 0.0016 29.2 4.7 46 131-178 54-99 (165)
81 PLN03088 SGT1, suppressor of 32.9 1.5E+02 0.0033 29.8 7.3 49 131-181 53-101 (356)
82 PRK02603 photosystem I assembl 32.2 1.7E+02 0.0036 25.7 6.8 50 132-181 53-103 (172)
83 PF02330 MAM33: Mitochondrial 32.1 59 0.0013 30.1 4.0 31 134-164 162-192 (204)
84 KOG3380 Actin-related protein 32.0 1.2E+02 0.0027 27.4 5.7 81 27-109 45-139 (152)
85 PF02184 HAT: HAT (Half-A-TPR) 31.9 56 0.0012 22.0 2.7 30 165-196 2-31 (32)
86 PF14559 TPR_19: Tetratricopep 31.5 60 0.0013 23.5 3.2 50 131-182 8-57 (68)
87 PRK10803 tol-pal system protei 31.1 2.7E+02 0.0058 27.1 8.5 88 95-183 161-250 (263)
88 PRK02603 photosystem I assembl 30.4 2.7E+02 0.0058 24.4 7.8 49 135-183 20-68 (172)
89 PRK11788 tetratricopeptide rep 30.2 2E+02 0.0044 28.1 7.6 50 131-180 158-210 (389)
90 PF14938 SNAP: Soluble NSF att 29.9 59 0.0013 31.4 3.7 45 131-178 98-143 (282)
91 cd02677 MIT_SNX15 MIT: domain 29.8 89 0.0019 24.7 4.0 28 151-178 7-34 (75)
92 PF12663 DUF3788: Protein of u 29.4 49 0.0011 29.0 2.7 26 62-88 9-34 (133)
93 PF08424 NRDE-2: NRDE-2, neces 28.5 5.9E+02 0.013 25.2 12.7 107 59-178 7-130 (321)
94 KOG3617 WD40 and TPR repeat-co 27.4 3.7E+02 0.008 31.2 9.4 28 151-178 913-940 (1416)
95 PRK10747 putative protoheme IX 26.8 3E+02 0.0066 27.9 8.4 36 149-184 327-362 (398)
96 cd02680 MIT_calpain7_2 MIT: do 26.7 1E+02 0.0022 24.6 3.8 46 149-194 5-55 (75)
97 KOG2002 TPR-containing nuclear 26.2 1.3E+02 0.0027 34.9 5.7 100 70-178 38-192 (1018)
98 TIGR00990 3a0801s09 mitochondr 25.9 6.4E+02 0.014 27.0 11.0 47 132-180 526-572 (615)
99 PRK10370 formate-dependent nit 25.8 1.5E+02 0.0032 27.2 5.4 47 132-180 128-174 (198)
100 PRK11788 tetratricopeptide rep 25.4 4.5E+02 0.0098 25.6 9.2 51 131-183 124-174 (389)
101 PF13432 TPR_16: Tetratricopep 25.1 76 0.0016 22.9 2.8 26 155-180 2-27 (65)
102 PRK09956 hypothetical protein; 24.8 7E+02 0.015 24.8 10.5 67 95-166 187-256 (308)
103 KOG2076 RNA polymerase III tra 24.5 2.9E+02 0.0063 31.7 8.1 112 67-183 103-240 (895)
104 PF14938 SNAP: Soluble NSF att 23.8 6.5E+02 0.014 24.1 9.7 116 69-186 68-192 (282)
105 PF08631 SPO22: Meiosis protei 23.6 4.1E+02 0.009 25.5 8.3 110 74-195 50-169 (278)
106 PF09384 UTP15_C: UTP15 C term 22.9 4.7E+02 0.01 23.0 7.9 30 93-129 73-102 (148)
107 TIGR00756 PPR pentatricopeptid 22.3 1.9E+02 0.0041 17.4 4.3 27 157-183 7-33 (35)
No 1
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=100.00 E-value=2.6e-49 Score=341.39 Aligned_cols=122 Identities=40% Similarity=0.903 Sum_probs=118.8
Q ss_pred HHHHHHHHHH-hhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCH
Q 017043 55 DNRRRLIEAI-DKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDA 133 (378)
Q Consensus 55 ~~~~~~~~~i-~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~ 133 (378)
+.|+.|+.+| +.|+|||||++|++||+|++++||+|+.+|+|+.||||||++|+++++||||+|||||||+||++|+||
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~dp 82 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCDEP 82 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCCH
Confidence 4678899999 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 017043 134 QVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLG 176 (378)
Q Consensus 134 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~G 176 (378)
++||+||+++|||++||+|||+||.+||.+|+|++|++||++|
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999998
No 2
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=100.00 E-value=2.7e-45 Score=317.08 Aligned_cols=125 Identities=42% Similarity=0.915 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhhcC-CCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccC
Q 017043 53 LLDNRRRLIEAIDKYE-GDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCI 131 (378)
Q Consensus 53 l~~~~~~~~~~i~~~~-gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~ 131 (378)
+.++|+.++++|.+|+ |||||++|++||+|++++||+++.+++|..||||||++|+++++|+||+|||+|||+||++++
T Consensus 1 ~~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~ 80 (126)
T PF08311_consen 1 LEQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS 80 (126)
T ss_dssp -HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS
T ss_pred CHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc
Confidence 3567889999999998 999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Q 017043 132 DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGI 177 (378)
Q Consensus 132 d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi 177 (378)
+|.+||.||+++|||+++|+||++||.++|.+|+|++|++||++||
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999998
No 3
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.2e-32 Score=297.13 Aligned_cols=156 Identities=37% Similarity=0.703 Sum_probs=149.2
Q ss_pred hhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCC-CCcHHHHHHHHHHHhcccccccchhhHHHHHHH--
Q 017043 49 LKKSLLDNRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGD-SSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLE-- 125 (378)
Q Consensus 49 ~~~~l~~~~~~~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~-~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~-- 125 (378)
....++.++++++..++.|.++|||++|+|||.|+.++||+|+. .++|..+||||+..|.+.++|+||+|||++|+.
T Consensus 10 ~~~~~~n~eq~li~el~~~~~~DPl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~ 89 (974)
T KOG1166|consen 10 QNPTPLNYEQRLIYELESYAGNDPLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLE 89 (974)
T ss_pred ccCcHHHHHHHHHHHHHhhcCCCchhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHH
Confidence 44567778899999999999999999999999999999999998 899999999999999999999999999999995
Q ss_pred HhhccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhcccC
Q 017043 126 YAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSMRKTQV 204 (378)
Q Consensus 126 Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~~~~~~ 204 (378)
..+.|.|++++|.||+++|||+.||+||++||.+||.++.|++|.+||++||++.|+|.++|+++|..|+.|+++++.+
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r~n~~ 168 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMRQNAQ 168 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998544
No 4
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=96.33 E-value=0.023 Score=57.32 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=60.5
Q ss_pred HHHHhhccCCHHHHHHHHH--HCCc--chHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 017043 123 WLEYAENCIDAQVIFSFLD--ANDI--GKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVR 197 (378)
Q Consensus 123 Wl~Ya~~~~d~~~if~~L~--~~~I--G~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (378)
||..|+-=--+.+|+.-|. -+.| -.+||.||+.+|.+++..|.+.....||+.+|..+|+|++.|....-.++..
T Consensus 109 Cl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 109 CLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 4555543223456666665 2234 4899999999999999999999999999999999999999999999999873
No 5
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=0.036 Score=58.07 Aligned_cols=122 Identities=17% Similarity=0.340 Sum_probs=91.6
Q ss_pred CCCc--HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc-------cCCHHHHHHHH
Q 017043 70 DDPL--QPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN-------CIDAQVIFSFL 140 (378)
Q Consensus 70 dDPL--~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~-------~~d~~~if~~L 140 (378)
+.|+ |.|.+|++-++.. |....+..++||++..---...=+-=-||+-|||.||=+ +.-.++||+-+
T Consensus 317 ~np~nYDsWfdylrL~e~~----g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESV----GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred hCCCCchHHHHHHHHHHhc----CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4554 7899999999863 343458899999986544433333346999999999943 33458999877
Q ss_pred HHCCcc---hHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 017043 141 DANDIG---KTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRS 198 (378)
Q Consensus 141 ~~~~IG---~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~ 198 (378)
.. =|- -.+|..|.-||.+.-.+.+...|..|+-.+|-.+ |-++|-+.|-+++..+
T Consensus 393 l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--PK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 393 LD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--PKDKLFKGYIELELQL 450 (677)
T ss_pred Hh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--CchhHHHHHHHHHHHH
Confidence 76 444 3578899999999999999999999987777554 8888888888886543
No 6
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.17 E-value=0.042 Score=57.61 Aligned_cols=127 Identities=20% Similarity=0.355 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc----
Q 017043 54 LDNRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN---- 129 (378)
Q Consensus 54 ~~~~~~~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~---- 129 (378)
...|+.|+..|+.- -=-+..|++|-+|-++ ++ .-..-..+.||++. .|-|++-|||+||++
T Consensus 56 ~RkRkefEd~irrn--R~~~~~WikYaqwEes---q~-e~~RARSv~ERALd---------vd~r~itLWlkYae~Emkn 120 (677)
T KOG1915|consen 56 LRKRKEFEDQIRRN--RLNMQVWIKYAQWEES---QK-EIQRARSVFERALD---------VDYRNITLWLKYAEFEMKN 120 (677)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh---HH-HHHHHHHHHHHHHh---------cccccchHHHHHHHHHHhh
Confidence 34456678888732 2347899999999875 21 11235578899873 578999999999974
Q ss_pred --cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 017043 130 --CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSM 199 (378)
Q Consensus 130 --~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~ 199 (378)
+++++.+|.--. .|--..-.||-.|-..-|.-|+..-|.+||.+=+.. +|-+.--..|-.|+.|.-
T Consensus 121 k~vNhARNv~dRAv--t~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRyk 188 (677)
T KOG1915|consen 121 KQVNHARNVWDRAV--TILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYK 188 (677)
T ss_pred hhHhHHHHHHHHHH--HhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhh
Confidence 567788776433 244567788999999999999999999999987765 576666667777776643
No 7
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.57 E-value=0.22 Score=54.03 Aligned_cols=146 Identities=14% Similarity=0.213 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH---------------------hcccc
Q 017043 53 LLDNRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRR---------------------FWHSQ 111 (378)
Q Consensus 53 l~~~~~~~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~---------------------f~~~e 111 (378)
+-..|+.|-.+|....-..--.+|.=||+.++++ |... --+.+++|-++. =+..+
T Consensus 118 iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~---~lPe-ts~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 118 ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH---GLPE-TSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC---CChH-HHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3456777878887654333446888888888763 1110 012333333221 12235
Q ss_pred cccchhhHH--------HHHHHHhhcc-CCHHHHH----HHHHHCCcc---hHHHHHHHHHHHHHHHccChHHHHHHHHH
Q 017043 112 CYKDDLRYL--------NVWLEYAENC-IDAQVIF----SFLDANDIG---KTHSVYYIAYALHMESKSKMKAANDLFSL 175 (378)
Q Consensus 112 ~YknD~RyL--------kiWl~Ya~~~-~d~~~if----~~L~~~~IG---~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~ 175 (378)
.|-||++++ .+|+..-+++ .+|..++ .-..+.||| -++..+|-..|.++-..|.|++|..||..
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyee 273 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEE 273 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 788999987 5899998874 5665443 356778888 57888999999999999999999999999
Q ss_pred HHHc--cCCchHHHHHHHHHHHHHHhhcc
Q 017043 176 GISR--NAQPTEKLKDAYKKFLVRSMRKT 202 (378)
Q Consensus 176 Gi~~--~A~P~~rL~~~~~~F~~R~~~~~ 202 (378)
||+. .-+-...+-..|.+|+.++....
T Consensus 274 ai~~v~tvrDFt~ifd~Ya~FEE~~~~~~ 302 (835)
T KOG2047|consen 274 AIQTVMTVRDFTQIFDAYAQFEESCVAAK 302 (835)
T ss_pred HHHhheehhhHHHHHHHHHHHHHHHHHHH
Confidence 9994 55789999999999998766543
No 8
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.61 E-value=0.44 Score=46.42 Aligned_cols=110 Identities=15% Similarity=0.283 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc----cCC---HHHHHHHHHHCCcch
Q 017043 75 PWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN----CID---AQVIFSFLDANDIGK 147 (378)
Q Consensus 75 ~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~----~~d---~~~if~~L~~~~IG~ 147 (378)
+|+.|++++..+. | -.....+.++|.. ..+ ---.||+.||.+ ..| +..||.-.... .+.
T Consensus 3 v~i~~m~~~~r~~---g-~~~aR~vF~~a~~----~~~-----~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTE---G-IEAARKVFKRARK----DKR-----CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPS 68 (280)
T ss_dssp HHHHHHHHHHHHH---H-HHHHHHHHHHHHC----CCC-----S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHhC---C-hHHHHHHHHHHHc----CCC-----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCC
Confidence 7999999998752 1 2346677888851 111 123589999965 355 46888877753 444
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC-c-hHHHHHHHHHHHHHHh
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ-P-TEKLKDAYKKFLVRSM 199 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~-P-~~rL~~~~~~F~~R~~ 199 (378)
-..|+..|..+|...++...|..||+++|..-.. . ...|-++|-+|+.+..
T Consensus 69 -~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 69 -DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred -CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 4788999999999999999999999999987322 2 3458888888886654
No 9
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.41 E-value=0.45 Score=46.34 Aligned_cols=127 Identities=12% Similarity=0.170 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc--
Q 017043 53 LLDNRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC-- 130 (378)
Q Consensus 53 l~~~~~~~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~-- 130 (378)
+...|.-|..+... +.---++|..|-.+= |--++....-..|+|+.++.|.++. .+|+.|+++.
T Consensus 17 ~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E---~~~~~d~~~A~~Ife~glk~f~~~~---------~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 17 IEAARKVFKRARKD--KRCTYHVYVAYALME---YYCNKDPKRARKIFERGLKKFPSDP---------DFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHCC--CCS-THHHHHHHHHH---HHTCS-HHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcC--CCCCHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHH
Confidence 44556666666531 222346666665542 2223333346899999999877763 5799999863
Q ss_pred ----CCHHHHHHHHHHCCcchH--HHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 017043 131 ----IDAQVIFSFLDANDIGKT--HSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSM 199 (378)
Q Consensus 131 ----~d~~~if~~L~~~~IG~~--~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~ 199 (378)
++.+.+|.-.... ++.. .-.+|..|..+-...|+...+..|+++-.+.--+ ...+..|..|..
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~-----~~~~~~f~~ry~ 151 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE-----DNSLELFSDRYS 151 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT-----S-HHHHHHCCT-
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-----hhHHHHHHHHhh
Confidence 3568899888777 5544 4789999999999999999999999887765333 344455555543
No 10
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=91.90 E-value=1.8 Score=36.75 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhh--ccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAE--NCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLF 173 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~--~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy 173 (378)
.-.+|++|... .|-||.||.+-|+...- ..--|..|-.-|..+||-..+.. ..++.......|..+.
T Consensus 11 I~~vi~~l~~~-----gyidD~~ya~~~v~~~~~~~~~G~~~I~~~L~~kGi~~~~i~------~~l~~~~~~e~a~~~~ 79 (121)
T PF02631_consen 11 IEEVIDRLKEL-----GYIDDERYAESYVRSRLRRKGKGPRRIRQKLKQKGIDREIIE------EALEEYDEEEEALELA 79 (121)
T ss_dssp HHHHHHHHHHT-----TSS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHTT--HHHHH------HHHTCS-HHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCCHHHHHHHHHHHhcccccccHHHHHHHHHHHCCChHHHH------HHHHHhhHHHHHHHHH
Confidence 44566666544 99999999999999776 46688999999999999987654 3333222333466666
Q ss_pred HHHHHcc-CCchHHHHHHHHHHHHH
Q 017043 174 SLGISRN-AQPTEKLKDAYKKFLVR 197 (378)
Q Consensus 174 ~~Gi~~~-A~P~~rL~~~~~~F~~R 197 (378)
+.-.... ..+-..+.++...|+.|
T Consensus 80 ~kk~~~~~~~~~~~~~~K~~~~L~r 104 (121)
T PF02631_consen 80 EKKYRRYRKPSDRKRKQKLIRFLMR 104 (121)
T ss_dssp HHHHHHTTTS-CHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHH
Confidence 6666555 34556777777776655
No 11
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.85 E-value=1.6 Score=46.37 Aligned_cols=132 Identities=20% Similarity=0.361 Sum_probs=87.7
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH--Hc-------CCCC----C---CCcHHHHHHHHHHHhcccccc
Q 017043 50 KKSLLDNRRRLIEAIDKYEGDDPLQPWLECIKWVQE--AF-------PAGG----D---SSGLVVIYEQCVRRFWHSQCY 113 (378)
Q Consensus 50 ~~~l~~~~~~~~~~i~~~~gdDPL~~w~~YI~W~~~--~y-------p~g~----~---~s~L~~lLErc~~~f~~~e~Y 113 (378)
-..+...|+.||..|..- .--+.-|++||+.=.. .. -.++ . ...++.++.++|.+|..
T Consensus 30 i~~Ivk~Rr~fE~kL~rr--~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~---- 103 (568)
T KOG2396|consen 30 IREIVKKRRDFELKLQRR--TLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNG---- 103 (568)
T ss_pred HHHHHHHHHHHHHHHccC--cccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCC----
Confidence 345667889999999842 4557788888876321 00 0011 1 12366777788877766
Q ss_pred cchhhHHHHHHHHhhccC------CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHccCCchHH
Q 017043 114 KDDLRYLNVWLEYAENCI------DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSK-MKAANDLFSLGISRNAQPTEK 186 (378)
Q Consensus 114 knD~RyLkiWl~Ya~~~~------d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~-~~~A~~Iy~~Gi~~~A~P~~r 186 (378)
| +++|+.|+.+|. .-..||..|.... -.-+.+|+-=|.++...+. ++.|..+|..|++.+-+ ..+
T Consensus 104 --D---~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd-sp~ 175 (568)
T KOG2396|consen 104 --D---VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH--PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD-SPK 175 (568)
T ss_pred --C---HHHHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC-ChH
Confidence 4 468888887763 2367888887654 2336677777777666555 99999999999999954 455
Q ss_pred HHHHHHHHH
Q 017043 187 LKDAYKKFL 195 (378)
Q Consensus 187 L~~~~~~F~ 195 (378)
|...|=.|+
T Consensus 176 Lw~eyfrmE 184 (568)
T KOG2396|consen 176 LWKEYFRME 184 (568)
T ss_pred HHHHHHHHH
Confidence 666555443
No 12
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.10 E-value=0.48 Score=50.57 Aligned_cols=117 Identities=21% Similarity=0.379 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHHcCC---CCC--CCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCH--------------
Q 017043 73 LQPWLECIKWVQEAFPA---GGD--SSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDA-------------- 133 (378)
Q Consensus 73 L~~w~~YI~W~~~~yp~---g~~--~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~-------------- 133 (378)
++.|.++|+|=.++ |- +|. ++.+.=+.|+|+..|...+ .||..|..++...
T Consensus 237 v~~W~n~I~wEksN-pL~t~~~~~~~~Rv~yayeQ~ll~l~~~p---------eiWy~~s~yl~~~s~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 237 VELWKNWIKWEKSN-PLRTLDGTMLTRRVMYAYEQCLLYLGYHP---------EIWYDYSMYLIEISDLLTEKGDVPDAK 306 (656)
T ss_pred HHHHHHHHHHHhcC-CcccccccHHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHhhHHHHHhcccccch
Confidence 38899999998654 42 222 4556778999999887654 3999998764322
Q ss_pred ------HHHHHHHHHCCcchHHHHHHHHHHHHHHHccC---hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh
Q 017043 134 ------QVIFSFLDANDIGKTHSVYYIAYALHMESKSK---MKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSMR 200 (378)
Q Consensus 134 ------~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~---~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~~ 200 (378)
..||.-...--. ....++|-++|.+-|..-+ ++.-.++|+.-+...-.-...+--.|-.|.+|...
T Consensus 307 ~~t~e~~~~yEr~I~~l~-~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG 381 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLL-KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG 381 (656)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh
Confidence 334443333222 3467888899999998877 88899999988888888888888889999888653
No 13
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.94 E-value=2.1 Score=46.04 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCH--HHHH--HHHHHCCcchH
Q 017043 73 LQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDA--QVIF--SFLDANDIGKT 148 (378)
Q Consensus 73 L~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~--~~if--~~L~~~~IG~~ 148 (378)
|..|..|....+. -|.-+.+.-+.|||+-.. .+|..+||+|+.++..- .++- .......|-.+
T Consensus 297 l~nw~~yLdf~i~----~g~~~~~~~l~ercli~c---------A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 297 LKNWRYYLDFEIT----LGDFSRVFILFERCLIPC---------ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK 363 (577)
T ss_pred HHHHHHHhhhhhh----cccHHHHHHHHHHHHhHH---------hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC
Confidence 4568888766653 345677899999999775 57999999999875322 2222 23344445432
Q ss_pred H-HHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 017043 149 H-SVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVR 197 (378)
Q Consensus 149 ~-AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (378)
- .-.-.-||.+-|..|++..|..||+.=++.. --+..+.-++...++|
T Consensus 364 ~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r 412 (577)
T KOG1258|consen 364 KTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERR 412 (577)
T ss_pred CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHH
Confidence 2 2223346788899999999999999988888 3344444444444444
No 14
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.84 E-value=7.9 Score=38.49 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=78.9
Q ss_pred CCHHHHHHHhccCCch-hhhhhHH----------HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHH
Q 017043 32 RNIRLLNDALASHNSF-HLKKSLL----------DNRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIY 100 (378)
Q Consensus 32 Rs~~~L~~al~~~~~~-~~~~~l~----------~~~~~~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lL 100 (378)
+.++.|..||+.+.+. .+....+ +..+++++.+..+ .+=..+|..||.|++.++-. .+-+.+..++
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~-f~v~~~~~~y 125 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFAS-FTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhcc-CcHHHHHHHH
Confidence 4466777888876531 1111111 1123445555543 33478999999999987643 2345789999
Q ss_pred HHHHHHhcccccccchhhHHHHHHHHhhccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 101 EQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 101 Erc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
++|++.+.....-. +....+..++.. .+...+..++.++-..|....|..+++.=|+-+
T Consensus 126 ~~~l~~L~~~~~~~------------~~~~~~~~~~e~---------~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGR------------MTSHPDLPELEE---------FMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccc------------cccccchhhHHH---------HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 99999887664433 111222222222 223456678888999999999999999988855
Q ss_pred C
Q 017043 181 A 181 (378)
Q Consensus 181 A 181 (378)
=
T Consensus 185 ~ 185 (321)
T PF08424_consen 185 F 185 (321)
T ss_pred c
Confidence 3
No 15
>PRK14136 recX recombination regulator RecX; Provisional
Probab=89.40 E-value=3.8 Score=41.01 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSL 175 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~ 175 (378)
+-.+|++|... .|-||.||.+.|+.+--...-|..|-..|..+||...+..= .++.+-| ..+..|..++++
T Consensus 196 IE~VIerLke~-----gYLDDeRFAesyVr~R~~kkGp~rIrqELrQKGId~eLIEq--ALeeieE--DE~E~A~~L~eK 266 (309)
T PRK14136 196 VEPLLDALERE-----GWLSDARFAESLVHRRASRVGSARIVSELKRHAVGDALVES--VGAQLRE--TEFERAQAVWRK 266 (309)
T ss_pred HHHHHHHHHHc-----CCcCHHHHHHHHHHHHhhchhHHHHHHHHHHcCCCHHHHHH--HHHhccH--hHHHHHHHHHHH
Confidence 44666666544 99999999999998633334688999999999999776542 2222211 235677777766
Q ss_pred HH
Q 017043 176 GI 177 (378)
Q Consensus 176 Gi 177 (378)
=.
T Consensus 267 K~ 268 (309)
T PRK14136 267 KF 268 (309)
T ss_pred Hh
Confidence 54
No 16
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.18 E-value=1.6 Score=45.97 Aligned_cols=94 Identities=17% Similarity=0.358 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhccC--------CH----HHHHHHHHHCCcc-hHHHHHHHHHHHHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCI--------DA----QVIFSFLDANDIG-KTHSVYYIAYALHMES 162 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~--------d~----~~if~~L~~~~IG-~~~AlfYe~~A~~lE~ 162 (378)
+-.|+-||+.+-.+ |.+|..|++++. .. -+.|+|....-|. .+..-||-+|..+||.
T Consensus 95 vE~lf~rCL~k~l~----------ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 95 VESLFGRCLKKSLN----------LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred HHHHHHHHHhhhcc----------HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 56788899887544 889999998752 22 3778888773222 4677899999988865
Q ss_pred ---------ccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 017043 163 ---------KSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSM 199 (378)
Q Consensus 163 ---------~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~ 199 (378)
+.+.+.-..+|++.|+---.-+++|-+.|.+|+.-+-
T Consensus 165 ~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N 210 (660)
T COG5107 165 IEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELN 210 (660)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHH
Confidence 3455667789999999888888999999999986443
No 17
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.09 E-value=0.72 Score=50.20 Aligned_cols=126 Identities=18% Similarity=0.314 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHh-hcC-CCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhccc--ccccch-------hhHH
Q 017043 52 SLLDNRRRLIEAID-KYE-GDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHS--QCYKDD-------LRYL 120 (378)
Q Consensus 52 ~l~~~~~~~~~~i~-~~~-gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~--e~YknD-------~RyL 120 (378)
.|...|.-|+.+.. .|. .+|=-.+| +.|.+-..-..+ --.-+.||++++..-... +.|.|- .|=|
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw---~~waemElrh~~-~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVW---CAWAEMELRHEN-FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHH---HHHHHHHHhhhh-HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 45556666666654 464 34433444 555542221111 123567888887554442 344443 3779
Q ss_pred HHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 121 NVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 121 kiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
|||..|||+ +...+.+|.-+..-+|.|- ..-+.||.+||...-|.+|-++|++||.---=|
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTP--qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATP--QIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 999999986 2456889999999999874 456889999999999999999999999854444
No 18
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=86.66 E-value=5 Score=47.28 Aligned_cols=110 Identities=20% Similarity=0.357 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc---CCH---HHHHH----HHHH
Q 017043 73 LQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC---IDA---QVIFS----FLDA 142 (378)
Q Consensus 73 L~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~---~d~---~~if~----~L~~ 142 (378)
--+|++|+....+. +.-.+-..+-||++.+. -|+.-.--|+||+-|.++- .+. ..+|. |+-.
T Consensus 1458 Si~WI~YMaf~Lel----sEiekAR~iaerAL~tI----N~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~ 1529 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLEL----SEIEKARKIAERALKTI----NFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA 1529 (1710)
T ss_pred chHHHHHHHHHhhh----hhhHHHHHHHHHHhhhC----CcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch
Confidence 35899999998863 22234678889998775 4666667799999999762 321 45554 3333
Q ss_pred CCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 017043 143 NDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRS 198 (378)
Q Consensus 143 ~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~ 198 (378)
..| |...+.+|+.-+++++|.++|++=+.+-- -.-..-..|.+|+.|.
T Consensus 1530 ~~V-------~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1530 YTV-------HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHH-------HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcc
Confidence 333 44555566667788999999998887664 3444566677777553
No 19
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=84.80 E-value=4.3 Score=43.62 Aligned_cols=110 Identities=15% Similarity=0.335 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCC-------H----HHHHHH-HH
Q 017043 74 QPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCID-------A----QVIFSF-LD 141 (378)
Q Consensus 74 ~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d-------~----~~if~~-L~ 141 (378)
-.|..||+=-.- + ..-..+-.|+-||+.+-.+ |.+|..|++++.. . ..-|.| |.
T Consensus 54 r~W~~yi~~El~---s-kdfe~VEkLF~RCLvkvLn----------lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~ 119 (656)
T KOG1914|consen 54 RAWKLYIERELA---S-KDFESVEKLFSRCLVKVLN----------LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALE 119 (656)
T ss_pred HHHHHHHHHHHH---h-hhHHHHHHHHHHHHHHHhh----------HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHH
Confidence 478888875542 1 1112477899999988665 7899999987532 1 123443 33
Q ss_pred HCCcchHHHHHHHHHHHHHHH---------ccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 017043 142 ANDIGKTHSVYYIAYALHMES---------KSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVR 197 (378)
Q Consensus 142 ~~~IG~~~AlfYe~~A~~lE~---------~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (378)
..|+-.+...+|.+|-.+|+. ..+...-..||++++..--.-++.|-+.|..|+.-
T Consensus 120 kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~ 184 (656)
T KOG1914|consen 120 KIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQE 184 (656)
T ss_pred HhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHH
Confidence 344447777888888888764 33555678899999998888889999999999753
No 20
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=83.85 E-value=3 Score=45.80 Aligned_cols=94 Identities=12% Similarity=0.237 Sum_probs=70.4
Q ss_pred cHHHHHHHH--HHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCC------HHHHHHHHHHCC
Q 017043 73 LQPWLECIK--WVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCID------AQVIFSFLDAND 144 (378)
Q Consensus 73 L~~w~~YI~--W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d------~~~if~~L~~~~ 144 (378)
-.+|+.|+. |+.++. -.-+.|||+|++.|-+ |-|+||.......+ +++. |+.--+
T Consensus 651 eRv~mKs~~~er~ld~~------eeA~rllEe~lk~fp~---------f~Kl~lmlGQi~e~~~~ie~aR~a--Y~~G~k 713 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNV------EEALRLLEEALKSFPD---------FHKLWLMLGQIEEQMENIEMAREA--YLQGTK 713 (913)
T ss_pred chhhHHHhHHHHHhhhH------HHHHHHHHHHHHhCCc---------hHHHHHHHhHHHHHHHHHHHHHHH--HHhccc
Confidence 368888875 555432 2357899999998854 77999988765433 3333 444455
Q ss_pred cchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 145 IGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 145 IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
.+-.+-.+|.-.|.+-|..|...+|..|+.+|.-++-.-
T Consensus 714 ~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence 556778999999999999999999999999998887643
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=82.48 E-value=3 Score=39.70 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHH---HHHHHHHHCCcchHHHH
Q 017043 75 PWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQ---VIFSFLDANDIGKTHSV 151 (378)
Q Consensus 75 ~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~---~if~~L~~~~IG~~~Al 151 (378)
.+.+++..+....|. .-..++++..+. + .++++|..++.+.....+.. +++..+....--..-+.
T Consensus 80 ~~~~l~~l~~~~~~~-----~A~~~~~~~~~~------~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 147 (280)
T PF13429_consen 80 DYERLIQLLQDGDPE-----EALKLAEKAYER------D-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSAR 147 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HH
T ss_pred ccccccccccccccc-----cccccccccccc------c-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHH
Confidence 455666654333332 134455555433 2 46788888888776666664 45554443322245688
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 152 YYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 152 fYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
||..+|.++...|++++|..+|+.++...-.
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999997654
No 22
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.20 E-value=3.4 Score=26.08 Aligned_cols=31 Identities=6% Similarity=0.052 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
|.+|-..+.++...|+|++|.+.|+.+++-.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4567778899999999999999999998753
No 23
>PF08171 Mad3_BUB1_II: Mad3/BUB1 homology region 2; InterPro: IPR012572 This domain is required for cell cycle arrest induced by spindle assembly checkpoint (SPC) activation. It is also involved in the nuclear accumulation and kinetochore targeting of proteins Bub1p, Bub3p and Mad3p [].; GO: 0000075 cell cycle checkpoint, 0005634 nucleus; PDB: 2I3T_D 2I3S_F.
Probab=81.12 E-value=0.65 Score=36.42 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=15.3
Q ss_pred CcceeecCCCCCCCc---------ccCCCCCCCcccccccCCC-CCCchhHhHHhhC
Q 017043 320 HIEVFIDEECAETDT---------TRNEIGKSSNLFQVKQGDG-QDINRETKLLRKN 366 (378)
Q Consensus 320 ~~~Vf~De~~~~~~~---------~~~~~~~~~s~lklr~~~~-~~~~~e~elL~~n 366 (378)
||+||+|+.....++ +++..+| +|.|.+-++ ...|-| |+|+-.
T Consensus 1 Ki~IF~D~~~~~~~vy~li~~~gkKpEki~~---N~dLlYp~~~eE~s~e-EiLA~s 53 (68)
T PF08171_consen 1 KIPIFKDESGRSGPVYKLIENPGKKPEKIDC---NFDLLYPDDEEEYSLE-EILAIS 53 (68)
T ss_dssp --------------------------EEESS----HHHHCTTSSSB--HH-HHHHHH
T ss_pred CcceEeCCCCCCCccEEEeeCCCCCceeEEe---eeEeEecCCCceecHH-HHHHHH
Confidence 689999998765554 3455666 888888554 466766 777643
No 24
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=80.16 E-value=3.1 Score=28.74 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 152 YYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 152 fYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.|..+|..+...|++++|..+|+..|+..-.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4678899999999999999999999997543
No 25
>PRK14134 recX recombination regulator RecX; Provisional
Probab=79.78 E-value=15 Score=36.22 Aligned_cols=94 Identities=13% Similarity=0.050 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSL 175 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~ 175 (378)
.-.+|++|... .|-||.||.+.|+..--...-|..|-.-|..+||...+.. .+.+.+- ....+..|..+.++
T Consensus 95 Ie~vI~~L~e~-----~yldD~ryA~~yv~~~~~~~G~~~I~~eL~qKGI~~~iIe--~al~~~~-~e~e~e~a~~l~~K 166 (283)
T PRK14134 95 VNRVIRFLKEY-----NFIDDDKYCDMYIREKINSYGRNKIKYTLLNKGIKENIII--EKINNID-EEKEKKVAYKLAEK 166 (283)
T ss_pred HHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHCCCCHHHHH--HHHHhCC-hhhHHHHHHHHHHH
Confidence 33555555433 9999999999999865334568999999999999987654 1112211 11123455555555
Q ss_pred HHHccC---CchHHHHHHHHHHHHH
Q 017043 176 GISRNA---QPTEKLKDAYKKFLVR 197 (378)
Q Consensus 176 Gi~~~A---~P~~rL~~~~~~F~~R 197 (378)
-..... .+...+.++...|+.|
T Consensus 167 k~~~~~~~~~~~~k~k~Kl~~~L~r 191 (283)
T PRK14134 167 KYKILILSEKNKFKIYKKLGPYLIS 191 (283)
T ss_pred hhcccccccccHHHHHHHHHHHHHH
Confidence 443322 1344566666666644
No 26
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.11 E-value=4.9 Score=25.56 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
|..|...+.++...|++.+|.+.|+.+++-.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567788999999999999999999998743
No 27
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=77.03 E-value=12 Score=29.01 Aligned_cols=73 Identities=10% Similarity=-0.004 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc---cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN---CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDL 172 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~---~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~I 172 (378)
-+.++++++..-..+. ++. +|+.++.+ .++-...+.++...+++.......--+|..+...|+|++|.++
T Consensus 8 Ai~~~~k~~~~~~~~~---~~~----~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 8 AIKYYEKLLELDPTNP---NSA----YLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp HHHHHHHHHHHHCGTH---HHH----HHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHCCCCh---hHH----HHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3556667665544311 222 55555654 3455666666655556655544444559999999999999999
Q ss_pred HHH
Q 017043 173 FSL 175 (378)
Q Consensus 173 y~~ 175 (378)
|+.
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 975
No 28
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.68 E-value=4.3 Score=23.40 Aligned_cols=29 Identities=3% Similarity=-0.062 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 151 VYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 151 lfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
..|...|..+...+++.+|...|+.+|..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35778899999999999999999999864
No 29
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=74.44 E-value=19 Score=27.87 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHH-----ccCCc----hHHHHHHHHHHHHHHhh
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGIS-----RNAQP----TEKLKDAYKKFLVRSMR 200 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~-----~~A~P----~~rL~~~~~~F~~R~~~ 200 (378)
.-|..++.=|.-+|..|++++|...|..||+ .+..| .+.+..+..+++.|+..
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~ 67 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEE 67 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888889999999999999999987 22334 34556666666666554
No 30
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.40 E-value=8.8 Score=41.45 Aligned_cols=91 Identities=9% Similarity=0.152 Sum_probs=59.0
Q ss_pred HHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc---CCHH--
Q 017043 60 LIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC---IDAQ-- 134 (378)
Q Consensus 60 ~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~---~d~~-- 134 (378)
|+..|... .==+++|+.|+..+..+++. ...|..+.|+++..-.-+ |.. .++|-+|+++. .+..
T Consensus 102 fergv~ai--p~SvdlW~~Y~~f~~n~~~d---~~~lr~~fe~A~~~vG~d--F~S----~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 102 FERGVQAI--PLSVDLWLSYLAFLKNNNGD---PETLRDLFERAKSYVGLD--FLS----DPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred HHHHHHhh--hhHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcccc--hhc----cHHHHHHHHHHhccccHHHH
Confidence 34444433 23478999999999886543 223889999998764432 333 35899999763 4443
Q ss_pred -HHHHHHHHCCcchHHHHHHHHHHHHHHH
Q 017043 135 -VIFSFLDANDIGKTHSVYYIAYALHMES 162 (378)
Q Consensus 135 -~if~~L~~~~IG~~~AlfYe~~A~~lE~ 162 (378)
.||..+...=+ ..++.||..|-.++..
T Consensus 171 ~~iyeRileiP~-~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 171 ANIYERILEIPL-HQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHHHHHhhhh-hHhHHHHHHHHHHHhc
Confidence 44444443322 5789999999998887
No 31
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.11 E-value=17 Score=29.05 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHH-----ccCCchHHHHHHHH
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGIS-----RNAQPTEKLKDAYK 192 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~-----~~A~P~~rL~~~~~ 192 (378)
..|..|..=|--++..|++.+|..-|+.||+ -+..|-+.+...|+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr 53 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYE 53 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 4688999999999999999999999999998 44555555555444
No 32
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=73.04 E-value=4 Score=27.08 Aligned_cols=25 Identities=4% Similarity=0.078 Sum_probs=20.6
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHH
Q 017043 153 YIAYALHMESKSKMKAANDLFSLGI 177 (378)
Q Consensus 153 Ye~~A~~lE~~~~~~~A~~Iy~~Gi 177 (378)
|...|.++...|+|++|.++|+..+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567889999999999999999944
No 33
>PRK14135 recX recombination regulator RecX; Provisional
Probab=72.56 E-value=37 Score=32.52 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcccccccchhhHHHHHHHHhhcc--CCHHHHHHHHHHCCcchHHHHH
Q 017043 98 VIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC--IDAQVIFSFLDANDIGKTHSVY 152 (378)
Q Consensus 98 ~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~--~d~~~if~~L~~~~IG~~~Alf 152 (378)
.+++.++..+. ...|-||.||.+.|+...-.. --+..|-.-|..+||...+..-
T Consensus 89 ~~Ie~vl~~l~-~~~~ldD~~~a~~~~~~~~~~~~~g~~~I~~kL~~kGi~~~~Ie~ 144 (263)
T PRK14135 89 EIISEVIDKLK-EEKYIDDKEYAESYVRTNINTGDKGPRVIKQKLLQKGIEDEIIEE 144 (263)
T ss_pred HHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCHHHHHH
Confidence 45555555544 458999999999999876443 3678999999999999887653
No 34
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=71.58 E-value=48 Score=29.20 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcccccccchhhHHHHHHHHhhc-cCCHHHHHHHHHHCCcchHHHH
Q 017043 97 VVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN-CIDAQVIFSFLDANDIGKTHSV 151 (378)
Q Consensus 97 ~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~-~~d~~~if~~L~~~~IG~~~Al 151 (378)
-.+|++|. ...|-||.||..-|+..... -.-+..|-..|..+||...+..
T Consensus 46 ~~vl~~l~-----~~~~ldD~~~a~~~~~~~~~~~~g~~~I~~~L~~kGi~~~~I~ 96 (157)
T PRK00117 46 EAVLDRLK-----EEGLLDDERFAESFVRSRARKGYGPRRIRQELRQKGVDREIIE 96 (157)
T ss_pred HHHHHHHH-----HcCCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHcCCCHHHHH
Confidence 34555554 34899999999999998732 2357899999999999987654
No 35
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=69.10 E-value=11 Score=38.17 Aligned_cols=131 Identities=14% Similarity=0.286 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH--H--------cCCCCCC--------CcHHHHHHHHHHHhccccc
Q 017043 51 KSLLDNRRRLIEAIDKYEGDDPLQPWLECIKWVQE--A--------FPAGGDS--------SGLVVIYEQCVRRFWHSQC 112 (378)
Q Consensus 51 ~~l~~~~~~~~~~i~~~~gdDPL~~w~~YI~W~~~--~--------yp~g~~~--------s~L~~lLErc~~~f~~~e~ 112 (378)
..+.+.|+.||+.+..= .--|--|++||+.--. . --.|++. ...+-++.|.|.+|-+|
T Consensus 31 ~~IvktRr~fE~rL~rr--~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D-- 106 (435)
T COG5191 31 RRIVKTRRKFELRLQRR--EKKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFND-- 106 (435)
T ss_pred HHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCC--
Confidence 45567888899988742 5568889999987421 1 1123221 12345677888877665
Q ss_pred ccchhhHHHHHHHHhhcc------CCHHHHHHHHHHCCcchHHHHHHHH-HHHHHHHccChHHHHHHHHHHHHccCCchH
Q 017043 113 YKDDLRYLNVWLEYAENC------IDAQVIFSFLDANDIGKTHSVYYIA-YALHMESKSKMKAANDLFSLGISRNAQPTE 185 (378)
Q Consensus 113 YknD~RyLkiWl~Ya~~~------~d~~~if~~L~~~~IG~~~AlfYe~-~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 185 (378)
+++|..|+.+. ..-..||..+..+.=- -+.+|+- -+.-++..++++-|..+|+.|+..+.+ ..
T Consensus 107 -------~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~--nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p 176 (435)
T COG5191 107 -------PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL--NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SP 176 (435)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-Cc
Confidence 57999998764 3445667666554321 1233333 345677789999999999999998854 34
Q ss_pred HHHHHHHHHH
Q 017043 186 KLKDAYKKFL 195 (378)
Q Consensus 186 rL~~~~~~F~ 195 (378)
+|.-.|=.|+
T Consensus 177 ~iw~eyfr~E 186 (435)
T COG5191 177 RIWIEYFRME 186 (435)
T ss_pred hHHHHHHHHH
Confidence 5555555444
No 36
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=68.52 E-value=8.1 Score=28.43 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
|..|...|..+...|+|++|...|..+|+..-
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p 34 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP 34 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 77899999999999999999999999999753
No 37
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=67.51 E-value=29 Score=26.76 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHH-----ccCCchHHHHHHHH
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGIS-----RNAQPTEKLKDAYK 192 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~-----~~A~P~~rL~~~~~ 192 (378)
.-|.+++.=|.-.+..|+|.+|...|..||+ .+..|-...+..++
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~ 53 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLR 53 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3577888888999999999999999999987 33444444444433
No 38
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=67.03 E-value=38 Score=39.11 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=69.3
Q ss_pred hcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHHHHHHHHHHCCc
Q 017043 66 KYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDI 145 (378)
Q Consensus 66 ~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~if~~L~~~~I 145 (378)
.+.+.+|+..|.+||.|++... .+..--.-.+-++.|...+..... +.+-++.||+++-..-+..+-|.=..+
T Consensus 8 ~~~~~~~~n~eq~li~el~~~~-~~DPl~~w~ryi~wv~~~~~~~~~---~~~~l~~~lerc~~~~~~lk~Y~nD~R--- 80 (974)
T KOG1166|consen 8 EQQNPTPLNYEQRLIYELESYA-GNDPLDKWLRYIEWVLEVYPEGKE---NQSLLRNLLERCLEELEDLKRYRNDPR--- 80 (974)
T ss_pred hhccCcHHHHHHHHHHHHHhhc-CCCchhhhHhHhhhhhhccccCCc---hhhhHHHHHHHHHHhccchhhccccHH---
Confidence 4567999999999999996533 322333355677777776666555 455566666655333233333332222
Q ss_pred chHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchH-HHHHHHHHHHHH
Q 017043 146 GKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTE-KLKDAYKKFLVR 197 (378)
Q Consensus 146 G~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~-rL~~~~~~F~~R 197 (378)
+..+|.. ||....+.+|..+|..=-...+-+.- .+-.+|..+..|
T Consensus 81 ---fl~~~~~----~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~ 126 (974)
T KOG1166|consen 81 ---FLILWCS----LELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLER 126 (974)
T ss_pred ---HHHHHHh----HHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 2233332 77788888888888877666665533 233444444433
No 39
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=65.44 E-value=82 Score=37.84 Aligned_cols=155 Identities=14% Similarity=0.210 Sum_probs=104.1
Q ss_pred CCCCCCCHHHHHHHhccCCchh-----------hhhhHHHHHHHHHHHHhhc---CCCCCcHHHHHHHHHHHHHcCCCCC
Q 017043 27 PLKRGRNIRLLNDALASHNSFH-----------LKKSLLDNRRRLIEAIDKY---EGDDPLQPWLECIKWVQEAFPAGGD 92 (378)
Q Consensus 27 PL~~GRs~~~L~~al~~~~~~~-----------~~~~l~~~~~~~~~~i~~~---~gdDPL~~w~~YI~W~~~~yp~g~~ 92 (378)
+-+.--|+.-....+.+++.++ ....+...|+-.+++|..- +++--|-+|.-|++-- ..|- .
T Consensus 1437 l~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlE-n~yG---~ 1512 (1710)
T KOG1070|consen 1437 LSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLE-NAYG---T 1512 (1710)
T ss_pred cccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHH-HhhC---c
Confidence 3333336666666665554321 1234455666677777643 6899999999999965 4453 4
Q ss_pred CCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhh--ccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHH
Q 017043 93 SSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAE--NCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAAN 170 (378)
Q Consensus 93 ~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~--~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~ 170 (378)
+..+..+.||+.++.- -| -=|+++.=-|.. -..++.++|..|..+ -| +.-.-|+-||.+|-....=+.|.
T Consensus 1513 eesl~kVFeRAcqycd---~~---~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~-q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1513 EESLKKVFERACQYCD---AY---TVHLKLLGIYEKSEKNDEADELLRLMLKK-FG-QTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HHHHHHHHHHHHHhcc---hH---HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hc-chhhHHHHHHHHHhcccHHHHHH
Confidence 4458999999985522 22 235666666664 367888999988754 55 55567899999999999999999
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 017043 171 DLFSLGISRNAQPTEKLKDAYKKFLVRSM 199 (378)
Q Consensus 171 ~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~ 199 (378)
.|+++++++--. +.|-+|.....
T Consensus 1585 ~lL~rAL~~lPk------~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1585 ELLKRALKSLPK------QEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHhhcch------hhhHHHHHHHH
Confidence 999999986532 45666654433
No 40
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=63.63 E-value=37 Score=26.93 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHccChHHHHHHHHHHHH-----ccCCchHHHHHHHH
Q 017043 147 KTHSVYYIAYALHMESKSKMKAANDLFSLGIS-----RNAQPTEKLKDAYK 192 (378)
Q Consensus 147 ~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~-----~~A~P~~rL~~~~~ 192 (378)
..-|.-|..=|.-++..|+|.+|...|..||+ -+.+|-..++..++
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r 53 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLR 53 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 34577788889999999999999999999998 44566444444433
No 41
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.53 E-value=38 Score=26.98 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHc----------cCCchHHHHHHHHHHHHHHhh
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGISR----------NAQPTEKLKDAYKKFLVRSMR 200 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~----------~A~P~~rL~~~~~~F~~R~~~ 200 (378)
.-|.-|..=|--++..|+|.+|...|+.||+- +-.+.+.+..+..+.+.|...
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~ 66 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQA 66 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 35777888899999999999999999999982 124555566666666666443
No 42
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=62.99 E-value=30 Score=25.04 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=38.7
Q ss_pred ccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 129 NCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 129 ~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
.+..+..+|.-+....=+ .+..+-..+.++...|++.+|..+|+..|...
T Consensus 12 ~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356678888888888744 66677777888889999999999999988643
No 43
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=62.20 E-value=21 Score=22.63 Aligned_cols=31 Identities=6% Similarity=0.057 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
|..|-.-+..+...|+|.+|..-|+.+|+-+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3456677888999999999999999999753
No 44
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=62.11 E-value=18 Score=28.13 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=38.0
Q ss_pred HHHHHHHHCCcchHHHHHHHHHHHH-HHHccChHHHHHHHHHHHHc
Q 017043 135 VIFSFLDANDIGKTHSVYYIAYALH-MESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 135 ~if~~L~~~~IG~~~AlfYe~~A~~-lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
.|..|.+..=||.++|.++.+|-.. .+.++++..+..=|-+|+.+
T Consensus 18 ~v~~FF~~DPlGqkIa~l~kdw~~~~~~~r~KiR~~L~ey~k~L~~ 63 (64)
T PF05596_consen 18 EVRNFFYEDPLGQKIAQLAKDWNEICQEVRKKIRAALAEYCKGLKN 63 (64)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5677889999999999999999765 56679999998888888764
No 45
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=61.09 E-value=17 Score=27.56 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGIS 178 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~ 178 (378)
.-|..+..=|.-+|..|+|.+|...|..||.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3477888889999999999999999999987
No 46
>PRK14137 recX recombination regulator RecX; Provisional
Probab=60.14 E-value=72 Score=29.82 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSL 175 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~ 175 (378)
+-.+|++|... .|-||.||.+.+.. ..---|..|-.-|..+||...+..=.. +.+ +...-++.|..+.++
T Consensus 74 Ie~vI~rL~e~-----gyLDD~rfAe~~~~--~k~~Gp~rI~~eL~qKGI~~~lI~~al--~~~-d~ede~e~a~~l~~K 143 (195)
T PRK14137 74 VTEVLERVQEL-----GYQDDAQVARAENS--RRGVGALRVRQTLRRRGVEETLIEETL--AAR-DPQEEQQEARNLLER 143 (195)
T ss_pred HHHHHHHHHHc-----CCCCHHHHHHHHHH--hcCchHHHHHHHHHHcCCCHHHHHHHH--Hhc-CchhHHHHHHHHHHH
Confidence 44666666544 99999999997522 222367899999999999987665222 221 111234555555555
Q ss_pred HHH
Q 017043 176 GIS 178 (378)
Q Consensus 176 Gi~ 178 (378)
-..
T Consensus 144 K~~ 146 (195)
T PRK14137 144 RWS 146 (195)
T ss_pred hcc
Confidence 443
No 47
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=59.38 E-value=84 Score=24.67 Aligned_cols=86 Identities=13% Similarity=0.131 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHh-hccCCHHHHHHHHHHCCcch-HHHHHHHHHHHHHHHccChHHHHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYA-ENCIDAQVIFSFLDANDIGK-THSVYYIAYALHMESKSKMKAANDLF 173 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya-~~~~d~~~if~~L~~~~IG~-~~AlfYe~~A~~lE~~~~~~~A~~Iy 173 (378)
-..++++++..+.+. .+.-+.+|..--+.+. +....+..+|.-+....-+. ..+..+...+..+...|++.+|...|
T Consensus 21 A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 99 (119)
T TIGR02795 21 AIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATL 99 (119)
T ss_pred HHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHH
Confidence 445555555443222 1222333333333332 23455677777666544332 23455677777788899999999999
Q ss_pred HHHHHccCC
Q 017043 174 SLGISRNAQ 182 (378)
Q Consensus 174 ~~Gi~~~A~ 182 (378)
..-+.....
T Consensus 100 ~~~~~~~p~ 108 (119)
T TIGR02795 100 QQVIKRYPG 108 (119)
T ss_pred HHHHHHCcC
Confidence 988887543
No 48
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=59.34 E-value=18 Score=22.05 Aligned_cols=31 Identities=13% Similarity=0.277 Sum_probs=21.0
Q ss_pred cChHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 017043 164 SKMKAANDLFSLGISRNAQPTEKLKDAYKKFL 195 (378)
Q Consensus 164 ~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~ 195 (378)
|+++.|..||+.|+.... =...|-..|-.|+
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHHHH
Confidence 567888899999997764 2334555555554
No 49
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=56.51 E-value=28 Score=22.54 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
|.-+...|..+-..|+|.+|..+|+..+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4556778889999999999999999887643
No 50
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=56.34 E-value=38 Score=24.92 Aligned_cols=52 Identities=6% Similarity=-0.002 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHH
Q 017043 133 AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEK 186 (378)
Q Consensus 133 ~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~r 186 (378)
+.+++..+... ......+|...|.++...|+|.+|.+.|+..++..-.+.+.
T Consensus 14 A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 14 ALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 34445444443 44467778889999999999999999999999877665554
No 51
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=56.04 E-value=26 Score=30.39 Aligned_cols=65 Identities=9% Similarity=0.047 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 116 DLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 116 D~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
||.....|+..+.. ..++.+.|..... +....+..|-.++..+...|++.+|...|+..|.....
T Consensus 54 ~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 54 QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 56667778777754 3566788888776 45556677777888888999999999999999986543
No 52
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=55.75 E-value=52 Score=35.27 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=63.2
Q ss_pred CCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc------CCHHHHHH-----HHHHCCcch-HHHHHHHHHHH
Q 017043 91 GDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC------IDAQVIFS-----FLDANDIGK-THSVYYIAYAL 158 (378)
Q Consensus 91 ~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~------~d~~~if~-----~L~~~~IG~-~~AlfYe~~A~ 158 (378)
|+-..-...+++++.-+.. ..=.+.++-=..-..-+..| ..+..+|+ ++...|.-. .+|-.|...|.
T Consensus 297 GKf~EA~~~~e~Al~I~~~-~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~ 375 (508)
T KOG1840|consen 297 GKFAEAEEYCERALEIYEK-LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE 375 (508)
T ss_pred CChHHHHHHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 4433445666777666655 22233443333322222211 22223332 225566666 89999999999
Q ss_pred HHHHccChHHHHHHHHHHHHcc-----------CCchHHHHHHHH
Q 017043 159 HMESKSKMKAANDLFSLGISRN-----------AQPTEKLKDAYK 192 (378)
Q Consensus 159 ~lE~~~~~~~A~~Iy~~Gi~~~-----------A~P~~rL~~~~~ 192 (378)
++-.+|+|++|.++|+..|++. +.|+..|-..|.
T Consensus 376 l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 376 LYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 9999999999999999999976 456666666653
No 53
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=54.93 E-value=28 Score=26.22 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
.+|..|...|..+...|+|++|...|+..++-
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999976
No 54
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=54.06 E-value=63 Score=25.13 Aligned_cols=51 Identities=10% Similarity=0.232 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHc-----cCCchH----HHHHHHHHHHHHHh
Q 017043 149 HSVYYIAYALHMESKSKMKAANDLFSLGISR-----NAQPTE----KLKDAYKKFLVRSM 199 (378)
Q Consensus 149 ~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~-----~A~P~~----rL~~~~~~F~~R~~ 199 (378)
-|.++..=|.-.+..|+|++|...|..||+. +.+|-. .|..+..++..|..
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE 64 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAE 64 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4677888888999999999999999999883 233333 34444555555543
No 55
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=53.55 E-value=75 Score=22.26 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 130 CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 130 ~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
...+.++|.-..... ......+..+|.++...|++.+|..+|...+...
T Consensus 50 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 50 YEEALEDYEKALELD--PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 344556666555433 3333567788888888999999999998887643
No 56
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=51.01 E-value=48 Score=28.03 Aligned_cols=25 Identities=12% Similarity=-0.037 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHH
Q 017043 152 YYIAYALHMESKSKMKAANDLFSLG 176 (378)
Q Consensus 152 fYe~~A~~lE~~~~~~~A~~Iy~~G 176 (378)
+|++-..++...|.+++|..++-.-
T Consensus 84 l~~~~~~l~~k~~~~~~Al~~~l~~ 108 (140)
T smart00299 84 LYEEAVELYKKDGNFKDAIVTLIEH 108 (140)
T ss_pred cHHHHHHHHHhhcCHHHHHHHHHHc
Confidence 7889999999999999999887653
No 57
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=47.47 E-value=4.4e+02 Score=29.45 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSL 175 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~ 175 (378)
+-..|+.|=+.+..++..-+=.=-+-+.+.=+.-+.++.++|.-+... +...+.-+..||..|...|+..+|...|+.
T Consensus 136 ~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 136 IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444455555554444443333333334444445578889999999984 446677889999999999999999999999
Q ss_pred HHHccCCchHHHHH
Q 017043 176 GISRNAQPTEKLKD 189 (378)
Q Consensus 176 Gi~~~A~P~~rL~~ 189 (378)
+|...+--..++.+
T Consensus 214 a~~~~~~~~~~~~~ 227 (694)
T PRK15179 214 GLDAIGDGARKLTR 227 (694)
T ss_pred HHHhhCcchHHHHH
Confidence 99988876655443
No 58
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=46.93 E-value=72 Score=25.10 Aligned_cols=51 Identities=14% Similarity=0.280 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHH-----ccCCch----HHHHHHHHHHHHHHhh
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGIS-----RNAQPT----EKLKDAYKKFLVRSMR 200 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~-----~~A~P~----~rL~~~~~~F~~R~~~ 200 (378)
|.+...=|.-.+..|+|++|...|..||+ .+-+|- +.|..+..++..|...
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~ 65 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEE 65 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45556667788899999999999999987 222333 4555666666666443
No 59
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=45.81 E-value=1.6e+02 Score=25.21 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHCCc-chHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 017043 132 DAQVIFSFLDANDI-GKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLV 196 (378)
Q Consensus 132 d~~~if~~L~~~~I-G~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~ 196 (378)
.+..+|.--...|. |....--|+..|..|-..|++++|..+++.++... |-+.+....+-|..
T Consensus 19 ~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 19 EAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHH
Confidence 34788888888774 56677889999999999999999999999998754 65555666666654
No 60
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=44.91 E-value=1.1e+02 Score=25.08 Aligned_cols=49 Identities=12% Similarity=0.084 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
.++..+|.-.. .++.....+|-..|.++...|++++|...|+.++...-
T Consensus 68 ~~A~~~~~~~~--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 68 EEAIDAYALAA--ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHH--hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44455555443 35566677777788899999999999999999998753
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=44.86 E-value=2.7e+02 Score=28.31 Aligned_cols=78 Identities=13% Similarity=-0.001 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHHhcccccccchh--hH--HHHHHHHhh-ccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHH
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDL--RY--LNVWLEYAE-NCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKA 168 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~--Ry--LkiWl~Ya~-~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~ 168 (378)
..+..++|+.++. .-+|+ .+ .-=|+.|-. ..+.+++.|.-.....+.-.... |...+.+++..|+.++
T Consensus 316 ~~~~~~~e~~lk~------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 316 EKLEKLIEKQAKN------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAE 388 (409)
T ss_pred HHHHHHHHHHHHh------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHH
Confidence 4566777776643 33444 22 234555442 23344554542113333333333 5578888888999999
Q ss_pred HHHHHHHHHH
Q 017043 169 ANDLFSLGIS 178 (378)
Q Consensus 169 A~~Iy~~Gi~ 178 (378)
|.++|+.|+.
T Consensus 389 A~~~~~~~l~ 398 (409)
T TIGR00540 389 AAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 62
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.62 E-value=1.4e+02 Score=34.78 Aligned_cols=105 Identities=15% Similarity=0.238 Sum_probs=66.3
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCH-----
Q 017043 59 RLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDA----- 133 (378)
Q Consensus 59 ~~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~----- 133 (378)
.-...|-+|..+ +-|.+++.-+-+..-.+|. + ...-|+.++ -|.+=.|++-||+++-+...++
T Consensus 572 e~la~i~t~~~~---~~~~elc~~Lg~rl~~~g~---~--~~~a~lcYi----~agsv~k~v~~w~~~~~~~~~~~~y~~ 639 (1049)
T KOG0307|consen 572 ETLAAICTYAQT---DEFSELCDMLGDRLENAGD---L--TSAAILCYI----CAGSVDKLVEIWLKALDLELAPTSYQD 639 (1049)
T ss_pred HHHHHHHHhcch---hhHHHHHHHHHHHHhhccc---h--hhhhhHHhh----hccChhhhHHHHHHhcccccchHHHHH
Confidence 344556666333 7788888777666555443 1 112223333 4678889999999999875332
Q ss_pred --HHHHHHHHH----CCcc---hHHHHHHHHHHHHHHHccChHHHHHHHHH
Q 017043 134 --QVIFSFLDA----NDIG---KTHSVYYIAYALHMESKSKMKAANDLFSL 175 (378)
Q Consensus 134 --~~if~~L~~----~~IG---~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~ 175 (378)
.++-.++.. .+|+ ..++.+|++||++|-.+|.+.-|.+.+..
T Consensus 640 ~~e~l~~~~~~l~~~~~~~~~s~~l~~~~~~yanllasQG~~~~A~~~l~~ 690 (1049)
T KOG0307|consen 640 LAEDLMELTLKLAQFSANKTYSAGLAKKFSEYANLLASQGALAAAMSFLPL 690 (1049)
T ss_pred HHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHhcChHHHHHhhcCc
Confidence 122211111 2222 45889999999999999999999876653
No 63
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=43.88 E-value=1.5e+02 Score=33.02 Aligned_cols=82 Identities=7% Similarity=0.021 Sum_probs=63.4
Q ss_pred CCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccCh
Q 017043 93 SSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKM 166 (378)
Q Consensus 93 ~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~ 166 (378)
...-..+|++|+.. +|.+...++.|+.. ++++...+.-++.. ....+.++-..|..|...|+|
T Consensus 102 ~~ea~~~l~~~~~~---------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 102 SDEGLAVWRGIHQR---------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred cHHHHHHHHHHHhh---------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcch
Confidence 34466778888765 56677788888864 45777777777765 456678888999999999999
Q ss_pred HHHHHHHHHHHHccCCchH
Q 017043 167 KAANDLFSLGISRNAQPTE 185 (378)
Q Consensus 167 ~~A~~Iy~~Gi~~~A~P~~ 185 (378)
++|.++|+.-+..++.+-+
T Consensus 171 ~~A~~~y~~~~~~~p~~~~ 189 (694)
T PRK15179 171 EQADACFERLSRQHPEFEN 189 (694)
T ss_pred HHHHHHHHHHHhcCCCcHH
Confidence 9999999999997765443
No 64
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=43.55 E-value=1.4e+02 Score=22.30 Aligned_cols=31 Identities=3% Similarity=-0.043 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGIS 178 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~ 178 (378)
.+|..|-.-|.++...|++++|.+.|+..++
T Consensus 44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 44 DTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999999999875
No 65
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.42 E-value=39 Score=42.12 Aligned_cols=63 Identities=16% Similarity=0.024 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHhhccCCH---HHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 116 DLRYLNVWLEYAENCIDA---QVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 116 D~RyLkiWl~Ya~~~~d~---~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
+.+--++|+.+|+.+..+ .-.|.++..-+-+. ++..|.+.|.++-..|+-..|..|++.|++.
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 677899999999987644 67888988888877 8999999999999999999999999999953
No 66
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=43.31 E-value=37 Score=20.87 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
|+|..+++. ...|++.+|.++|+.=|.+
T Consensus 2 a~~~~a~~~--~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCY--YKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHH--HHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHccCHHHHHHHHHHHHHH
Confidence 455555554 4589999999999886654
No 67
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=43.08 E-value=25 Score=38.92 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=49.4
Q ss_pred HHHHHHhhc---cCCHHHHHHHHH-HCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC--chHHHHHHH
Q 017043 121 NVWLEYAEN---CIDAQVIFSFLD-ANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ--PTEKLKDAY 191 (378)
Q Consensus 121 kiWl~Ya~~---~~d~~~if~~L~-~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~--P~~rL~~~~ 191 (378)
+||++|+.+ .++-.+--.+|. .-++.-.+-.||.--.+++|.+++...|.+-|..|+..+-. |+=.|..+.
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 588888854 344444445542 23445667778888999999999999999999999987654 554444433
No 68
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=42.90 E-value=80 Score=22.92 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=33.7
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHc
Q 017043 133 AQVIFSFLDANDIGKTHSVYYIAYALHMESKS-KMKAANDLFSLGISR 179 (378)
Q Consensus 133 ~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~-~~~~A~~Iy~~Gi~~ 179 (378)
+...|.-... +....+..|-..|..+...| ++.+|.+.|+..|+.
T Consensus 22 A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 22 AIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3444443333 34566778888999999999 799999999999874
No 69
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=41.31 E-value=68 Score=36.85 Aligned_cols=94 Identities=11% Similarity=0.127 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHHHHHHHHHHC---Ccc-hHHHHHHHHHHHHHHHccChHHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDAN---DIG-KTHSVYYIAYALHMESKSKMKAAND 171 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~if~~L~~~---~IG-~~~AlfYe~~A~~lE~~~~~~~A~~ 171 (378)
-..++.+++..|.+..+|.. ++.+|.+|..+..+-.++|..+.++ .|| .+.+.+++--=.++....+|.++.+
T Consensus 168 A~~m~~KAV~~~i~~kq~~~---~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 168 AITYLKKAIYRFIKKKQYVG---IEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHHhhhcchH---HHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 35778899999998888864 7889999999988777776655443 333 4556666666677788899999999
Q ss_pred HHHHHHHccC---CchHHHHHHHH
Q 017043 172 LFSLGISRNA---QPTEKLKDAYK 192 (378)
Q Consensus 172 Iy~~Gi~~~A---~P~~rL~~~~~ 192 (378)
|+++-+.-.. .....|-.-|+
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHH
Confidence 9999988443 33444444443
No 70
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=39.87 E-value=2.1e+02 Score=24.60 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=42.5
Q ss_pred ccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 129 NCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 129 ~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
..+++.+.|..+....- ..+.+|...|..+...|++.+|...|+.++.....
T Consensus 39 ~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 39 DYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred CHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667888888776554 46788899999999999999999999999986654
No 71
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=39.69 E-value=51 Score=26.48 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 017043 147 KTHSVYYIAYALHMESKSKMKAANDLFSLGIS 178 (378)
Q Consensus 147 ~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~ 178 (378)
.+.|.=|++=|.-+|..|..++|...|+.||.
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 45677788888888888999999999999986
No 72
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=39.54 E-value=3.7e+02 Score=26.18 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=64.7
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHHHHHHHHHHCCcchHHH
Q 017043 71 DPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHS 150 (378)
Q Consensus 71 DPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~if~~L~~~~IG~~~A 150 (378)
+|....-+=|.-+ +.||. .+.++=.|+|+-. ++.|=..-+...+|+++|.....++==...|
T Consensus 138 ~~~~~L~~v~~ll-~~f~~------~l~Ivv~C~RKtE-----------~~~W~~LF~~lg~P~dLf~~cl~~~~l~tAa 199 (258)
T PF07064_consen 138 IPDALLPRVISLL-QEFPE------YLEIVVNCARKTE-----------VRYWPYLFDYLGSPRDLFEECLENGNLKTAA 199 (258)
T ss_pred chHHHHHHHHHHH-HcCcc------hHHHHHHHHHhhH-----------HHHHHHHHHhcCCHHHHHHHHHHcCcHHHHH
Confidence 3444555555555 44663 7899999999854 5567777777789999999999888777777
Q ss_pred HHHHHHHHHHHHcc-----ChHHHHHHHHHHHHcc
Q 017043 151 VYYIAYALHMESKS-----KMKAANDLFSLGISRN 180 (378)
Q Consensus 151 lfYe~~A~~lE~~~-----~~~~A~~Iy~~Gi~~~ 180 (378)
.|-.=+-..-.... ..+.|.++++..++.+
T Consensus 200 ~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~ 234 (258)
T PF07064_consen 200 SYLLVLQNLEGSSVVKDEESRQCALRLLVMALESG 234 (258)
T ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 77666643333333 6788888888888764
No 73
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.41 E-value=2.5e+02 Score=23.88 Aligned_cols=47 Identities=4% Similarity=-0.101 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGI 177 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi 177 (378)
.+..+....|..-.-..-.+.+++--+.++..+|++.+|...|+.+|
T Consensus 99 ~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 99 GQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 44445555554433334456778888888999999999999998764
No 74
>PRK09857 putative transposase; Provisional
Probab=38.00 E-value=1.7e+02 Score=28.92 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc---CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC---IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAAND 171 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~---~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~ 171 (378)
.|..++......+... +.++ ..+++|+.|+-.. .+..+++..+.... .+...--..+|..++..|.-++|.+
T Consensus 187 dl~~~~~~l~~ll~~~--~~~~-~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~~--~~~~e~iMTiAEqL~qeG~qe~~~~ 261 (292)
T PRK09857 187 DLMGLVEQMACLLSSG--YAND-RQIKGLFNYILQTGDAVRFNDFIDGVAERS--PKHKESLMTIAERLRQEGEQSKALH 261 (292)
T ss_pred hHHHHHHHHHHHHHhc--cCCH-HHHHHHHHHHhhccccchHHHHHHHHHHhC--ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666665555543 3333 5588999999432 34677887776542 1122223477888887776554444
Q ss_pred HHHHHHHc
Q 017043 172 LFSLGISR 179 (378)
Q Consensus 172 Iy~~Gi~~ 179 (378)
|-+.-+..
T Consensus 262 ia~~ml~~ 269 (292)
T PRK09857 262 IAKIMLES 269 (292)
T ss_pred HHHHHHHc
Confidence 33333333
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=37.60 E-value=3.3e+02 Score=26.35 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 017043 146 GKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSM 199 (378)
Q Consensus 146 G~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~ 199 (378)
+..++.-|--.+..++..|++.+|...|++.+..+ |-+-++-+|..++...+
T Consensus 232 ~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~--~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 232 AERLCETYFYLAKYYLSLGDLDEAAALFKLALANN--VYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHH
Confidence 44455566677888999999999999999999765 77888888887765444
No 76
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=37.49 E-value=92 Score=25.56 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=40.8
Q ss_pred ccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 129 NCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 129 ~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
...++..+|..+... +..-..+|...|..+...|++.+|..+|+.++...-.
T Consensus 32 ~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 32 RYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred cHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 356667777777664 4456788888899999999999999999999887643
No 77
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=35.73 E-value=63 Score=29.36 Aligned_cols=48 Identities=10% Similarity=-0.114 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
.++.+.|.+.....+-.-.+ |---+..+-..|+...|.+-|+..|..+
T Consensus 86 ~~AI~aY~~A~~L~~ddp~~--~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 86 GEAIYAYGRAAQIKIDAPQA--PWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHhcCCCCchH--HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35556666665555533333 3334455555666666666666666655
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=35.09 E-value=58 Score=33.33 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=37.5
Q ss_pred HHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 138 SFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 138 ~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.-+-.+..+..+|.||.+.|..+....++++|...+.++++.+..
T Consensus 168 ~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 168 VKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK 212 (389)
T ss_pred HHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence 334456677899999999999999999999999999999985543
No 79
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=34.57 E-value=99 Score=28.50 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc-CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHH---ccChHHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC-IDAQVIFSFLDANDIGKTHSVYYIAYALHMES---KSKMKAAND 171 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~-~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~---~~~~~~A~~ 171 (378)
+-.+|.+|... .|-||.||...|+.=--.. .-|..|.+-|..+||+...- ...|+. ......|..
T Consensus 54 Ie~Vi~~l~~~-----~~ldD~~fAe~~i~~r~~~g~G~~rl~qeL~qkGi~~~~I------e~aL~~~~~~~~~~~a~~ 122 (174)
T COG2137 54 IEEVIDRLAEE-----GYLDDTRFAEAYIRSRSRKGKGPARLKQELKQKGIDDEII------EEALELIDEEDEQERARK 122 (174)
T ss_pred HHHHHHHHHHc-----CcccHHHHHHHHHHHHHhcccChHHHHHHHHHcCCCHHHH------HHHHhccchHHHHHHHHH
Confidence 55666666544 9999999999999876544 57999999999999986532 122221 122334444
Q ss_pred HHHHHHHccCC-chHHHHHHHHHHHH
Q 017043 172 LFSLGISRNAQ-PTEKLKDAYKKFLV 196 (378)
Q Consensus 172 Iy~~Gi~~~A~-P~~rL~~~~~~F~~ 196 (378)
+...=..+... |-..++.+-..|+.
T Consensus 123 ~~~kk~~~~~~~~~~~~k~Ki~r~L~ 148 (174)
T COG2137 123 VLRKKFKRENKPPDKKEKAKIQRFLL 148 (174)
T ss_pred HHHHHhCccccCcchhHHHHHHHHHH
Confidence 44443333322 34455555555554
No 80
>PRK15331 chaperone protein SicA; Provisional
Probab=33.96 E-value=74 Score=29.18 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGIS 178 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~ 178 (378)
+++..+|.||.-..-.. ..|+..+|..+-..+.|++|...|-++..
T Consensus 54 ~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 54 DEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554432222 34555555555555555555555554443
No 81
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=32.94 E-value=1.5e+02 Score=29.84 Aligned_cols=49 Identities=10% Similarity=-0.030 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
.++...|.-+... .-..+..|-..+..+...|+|.+|...|+.++....
T Consensus 53 ~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 53 TEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 4455555555443 345566677889999999999999999999998664
No 82
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=32.22 E-value=1.7e+02 Score=25.74 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 132 DAQVIFSFLDANDIG-KTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 132 d~~~if~~L~~~~IG-~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
.+...|.-.....-. ...+..|...|..+...|++.+|..+|+.++....
T Consensus 53 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 53 EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 444555544432211 12466788888889999999999999999888643
No 83
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=32.09 E-value=59 Score=30.08 Aligned_cols=31 Identities=13% Similarity=0.375 Sum_probs=26.4
Q ss_pred HHHHHHHHHCCcchHHHHHHHHHHHHHHHcc
Q 017043 134 QVIFSFLDANDIGKTHSVYYIAYALHMESKS 164 (378)
Q Consensus 134 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~ 164 (378)
..++.||..+||...+|.|=..|+...|.+.
T Consensus 162 ~~~~~yLeeRGId~~la~fl~~y~~~kEq~e 192 (204)
T PF02330_consen 162 DAFMNYLEERGIDEELANFLHDYSTDKEQRE 192 (204)
T ss_dssp HHHHHHHHHTT-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999888753
No 84
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=31.96 E-value=1.2e+02 Score=27.35 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=54.4
Q ss_pred CCCCCCCHHHHHHHhccCCc----h--------hhhhhHHHHHHH-HHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCC
Q 017043 27 PLKRGRNIRLLNDALASHNS----F--------HLKKSLLDNRRR-LIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDS 93 (378)
Q Consensus 27 PL~~GRs~~~L~~al~~~~~----~--------~~~~~l~~~~~~-~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~ 93 (378)
-|++|++..+|..+|...+- . ..-+.|...|.. ++..|.+. ...-.|+-..||.-=.+ -|++..+
T Consensus 45 ll~qg~~~~AL~~aL~~~P~~t~~q~vK~~a~~~v~~vL~~ik~adI~~~v~~L-s~e~~DiLmKYiYkGm~-~p~d~~s 122 (152)
T KOG3380|consen 45 LLTQGKSLEALQTALLNPPYGTKDQEVKDRALNVVLKVLTSIKQADIEAAVKKL-STEEIDILMKYIYKGME-IPSDNSS 122 (152)
T ss_pred HHHcccHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-hHHHHHHHHHHHHHHhc-Cccccch
Confidence 47899999999999986531 1 112334455544 33335543 23467788888877665 4777666
Q ss_pred Cc-HHHHHHHHHHHhcc
Q 017043 94 SG-LVVIYEQCVRRFWH 109 (378)
Q Consensus 94 s~-L~~lLErc~~~f~~ 109 (378)
++ |+...|+.+..|.-
T Consensus 123 ~~~LL~WHEk~~~~~Gv 139 (152)
T KOG3380|consen 123 CVSLLQWHEKLVAKSGV 139 (152)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 66 99999999988764
No 85
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=31.92 E-value=56 Score=21.99 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 017043 165 KMKAANDLFSLGISRNAQPTEKLKDAYKKFLV 196 (378)
Q Consensus 165 ~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~ 196 (378)
.++.|..||++-+... |--+.--+|..|+.
T Consensus 2 E~dRAR~IyeR~v~~h--p~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVH--PEVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhC--CCchHHHHHHHhhc
Confidence 4688999999999986 55555556777764
No 86
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=31.52 E-value=60 Score=23.46 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.++..+|.-+....=+ ....+..+|.++-..|++++|..+++..+.....
T Consensus 8 ~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 8 DEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3445556655544333 3455557999999999999999999999887755
No 87
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.11 E-value=2.7e+02 Score=27.07 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhh-ccCCHHHHHHHHHHC-CcchHHHHHHHHHHHHHHHccChHHHHHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAE-NCIDAQVIFSFLDAN-DIGKTHSVYYIAYALHMESKSKMKAANDL 172 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~-~~~d~~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~~~~~~A~~I 172 (378)
.-+..++.++..|-++ .|.-+..|..-.+.|.. ...++...|.-+..+ -.+......+-.-+..+...|++.+|..+
T Consensus 161 ~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~ 239 (263)
T PRK10803 161 DAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAV 239 (263)
T ss_pred HHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHH
Confidence 3456666777666554 34445555444444432 245667888877643 33333333343445667789999999999
Q ss_pred HHHHHHccCCc
Q 017043 173 FSLGISRNAQP 183 (378)
Q Consensus 173 y~~Gi~~~A~P 183 (378)
|+..|..--..
T Consensus 240 ~~~vi~~yP~s 250 (263)
T PRK10803 240 YQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHCcCC
Confidence 99999875443
No 88
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=30.36 E-value=2.7e+02 Score=24.39 Aligned_cols=49 Identities=6% Similarity=0.095 Sum_probs=31.4
Q ss_pred HHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 135 VIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 135 ~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
|++.-+..-.+=-.-|..|-..+..+...|++.+|...|+.++.....|
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 68 (172)
T PRK02603 20 DLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP 68 (172)
T ss_pred HHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 4444444444444556667777777777788888888888777654443
No 89
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=30.17 E-value=2e+02 Score=28.06 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHCCcc---hHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 131 IDAQVIFSFLDANDIG---KTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG---~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
.++.++|.-|...+-. ...+.+|...+..+...|++.+|..+|+..++..
T Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 158 QKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 3455666665543321 2345566667777777777777777777776644
No 90
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=29.89 E-value=59 Score=31.35 Aligned_cols=45 Identities=11% Similarity=0.024 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHc-cChHHHHHHHHHHHH
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESK-SKMKAANDLFSLGIS 178 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~-~~~~~A~~Iy~~Gi~ 178 (378)
..+.++| ...|=....|..+..-|.++|.. |++++|.+.|+.++.
T Consensus 98 ~~A~~~y---~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 98 EKAIEIY---REAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHHHHHH---HHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred HHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555 46677788899999999999999 999999999999987
No 91
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=29.75 E-value=89 Score=24.68 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHH
Q 017043 151 VYYIAYALHMESKSKMKAANDLFSLGIS 178 (378)
Q Consensus 151 lfYe~~A~~lE~~~~~~~A~~Iy~~Gi~ 178 (378)
.-...-|.-.+..|+|.+|...|..||+
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445566778888999999999888887
No 92
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=29.38 E-value=49 Score=28.97 Aligned_cols=26 Identities=42% Similarity=1.020 Sum_probs=20.8
Q ss_pred HHHhhcCCCCCcHHHHHHHHHHHHHcC
Q 017043 62 EAIDKYEGDDPLQPWLECIKWVQEAFP 88 (378)
Q Consensus 62 ~~i~~~~gdDPL~~w~~YI~W~~~~yp 88 (378)
++|.+|-| .|+.+|.+.+.|++++|+
T Consensus 9 ~~i~~~lg-~~~~~w~~l~~~i~~~Y~ 34 (133)
T PF12663_consen 9 EEISEYLG-KPLELWDELCSWIEETYP 34 (133)
T ss_pred HHHHHHHC-ccHHHHHHHHHHHHHHcC
Confidence 44565544 478999999999999998
No 93
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=28.47 E-value=5.9e+02 Score=25.18 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=64.8
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCC-C-------CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc
Q 017043 59 RLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGD-S-------SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC 130 (378)
Q Consensus 59 ~~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~-~-------s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~ 130 (378)
.+...+.+. -.=++.|++||+-....++.+.. . -.-+.+|||+++. +|.=.+||+.|++.+
T Consensus 7 el~~~v~~~--P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~---------np~~~~L~l~~l~~~ 75 (321)
T PF08424_consen 7 ELNRRVREN--PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH---------NPDSERLLLGYLEEG 75 (321)
T ss_pred HHHHHHHhC--cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHH
Confidence 345556632 23378999999999888775432 1 1235788888877 234455777777654
Q ss_pred ---CCH---HHHHHHHHHCCcchHHHHHHHHHHHHHHH---ccChHHHHHHHHHHHH
Q 017043 131 ---IDA---QVIFSFLDANDIGKTHSVYYIAYALHMES---KSKMKAANDLFSLGIS 178 (378)
Q Consensus 131 ---~d~---~~if~~L~~~~IG~~~AlfYe~~A~~lE~---~~~~~~A~~Iy~~Gi~ 178 (378)
-++ ..-+.-+....-| --.+|.+|-.+... .-.+.....+|...|+
T Consensus 76 ~~~~~~~~l~~~we~~l~~~~~--~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 76 EKVWDSEKLAKKWEELLFKNPG--SPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHhCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 344 4556666665554 23344444444444 2356778888877766
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=27.40 E-value=3.7e+02 Score=31.21 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHH
Q 017043 151 VYYIAYALHMESKSKMKAANDLFSLGIS 178 (378)
Q Consensus 151 lfYe~~A~~lE~~~~~~~A~~Iy~~Gi~ 178 (378)
.+|-.|++|||+.|.++.|..+|..+-.
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 6899999999999999999999988754
No 95
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=26.81 E-value=3e+02 Score=27.87 Aligned_cols=36 Identities=6% Similarity=0.131 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCch
Q 017043 149 HSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPT 184 (378)
Q Consensus 149 ~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 184 (378)
-+.++..++.++-..++|.+|.+.|+..++....+.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 345566666666666666666666666666544433
No 96
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.73 E-value=1e+02 Score=24.57 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC-----chHHHHHHHHHH
Q 017043 149 HSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ-----PTEKLKDAYKKF 194 (378)
Q Consensus 149 ~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~-----P~~rL~~~~~~F 194 (378)
-|.|+..=|.-....|+|++|..+|..||+..-. =-+.|+.++..|
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn~~~k~~i~~K~~~~ 55 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSNETMDQALQTKLKQL 55 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 4667777788888899999999999999984322 233466667533
No 97
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=26.17 E-value=1.3e+02 Score=34.88 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=72.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHh-------------------h--
Q 017043 70 DDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYA-------------------E-- 128 (378)
Q Consensus 70 dDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya-------------------~-- 128 (378)
.-||+.|+..- ..|+.+|..-.++.|||... .+-..+.-|+++..+|+.++ +
T Consensus 38 ~a~le~wi~~A----leYy~~gk~eefi~iLE~g~---~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~ 110 (1018)
T KOG2002|consen 38 QAPLEAWIEIA----LEYYKQGKTEEFIKILESGL---IDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELF 110 (1018)
T ss_pred cCchhHHHHHH----HHHHhcccHHHHHHHHHhhh---hcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 56888886542 34666666566889999887 55566778899999998877 0
Q ss_pred --------------c--------------------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHH
Q 017043 129 --------------N--------------------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFS 174 (378)
Q Consensus 129 --------------~--------------------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~ 174 (378)
+ .+++...|.|+..+.=+--+ |...=|.++..+|+|..|..+|+
T Consensus 111 ~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil--~LlGkA~i~ynkkdY~~al~yyk 188 (1018)
T KOG2002|consen 111 DKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNIL--ALLGKARIAYNKKDYRGALKYYK 188 (1018)
T ss_pred HHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchH--HHHHHHHHHhccccHHHHHHHHH
Confidence 0 12445567777666655544 44577899999999999999999
Q ss_pred HHHH
Q 017043 175 LGIS 178 (378)
Q Consensus 175 ~Gi~ 178 (378)
..+.
T Consensus 189 ~al~ 192 (1018)
T KOG2002|consen 189 KALR 192 (1018)
T ss_pred HHHh
Confidence 9654
No 98
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=25.89 E-value=6.4e+02 Score=27.01 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 132 DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 132 d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
.+..+|..... |.......|...|.++...|++++|...|+.+++-.
T Consensus 526 eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 526 EAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 34445544433 334455567777888888888888888888887763
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=25.81 E-value=1.5e+02 Score=27.21 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 132 DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 132 d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
++..+|.-.....-...-++|.-+.+ +...|+|++|...|+.-++..
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~--~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASD--AFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHH--HHHcCCHHHHHHHHHHHHhhC
Confidence 34566666666555555555444333 345666666666666665544
No 100
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=25.40 E-value=4.5e+02 Score=25.59 Aligned_cols=51 Identities=12% Similarity=-0.038 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
..+..+|.-+... .......|...+..+...|++++|.++|+..+.....+
T Consensus 124 ~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 124 DRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred HHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 3456666666553 22334456667777777777777777777777655433
No 101
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=25.13 E-value=76 Score=22.86 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.3
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 155 AYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 155 ~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
..|..+...|+|.+|..+|+..+...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~ 27 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD 27 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35778889999999999999999988
No 102
>PRK09956 hypothetical protein; Provisional
Probab=24.80 E-value=7e+02 Score=24.80 Aligned_cols=67 Identities=9% Similarity=0.146 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc---CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccCh
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC---IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKM 166 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~---~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~ 166 (378)
.|..++...+..+.... .+| .++++||.|+-.. +++.+++..|....-..+-. -..+|..|+..|.-
T Consensus 187 dl~~~~~~l~~~l~~~~--~~~-~~~~~ll~Yil~~~~~~~~~~~i~~l~~~~~~~~e~--iMTiAe~l~qeG~e 256 (308)
T PRK09956 187 DLIGMVDRITTLLVRGF--TND-SQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQKER--LMTIAERLRQEGHQ 256 (308)
T ss_pred hHHHHHHHHHHHHHhcc--CcH-HHHHHHHHHHhhccCcchHHHHHHHHHHhCcccchH--HHHHHHHHHHHHHH
Confidence 47777777766655432 222 5589999999543 34567888877764332222 34788888887754
No 103
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=24.51 E-value=2.9e+02 Score=31.71 Aligned_cols=112 Identities=18% Similarity=0.090 Sum_probs=68.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCCCC---CCc----HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc----------
Q 017043 67 YEGDDPLQPWLECIKWVQEAFPAGGD---SSG----LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN---------- 129 (378)
Q Consensus 67 ~~gdDPL~~w~~YI~W~~~~yp~g~~---~s~----L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~---------- 129 (378)
+++..||..+.-.-+|-..+=-.|+. .+. +..+|-.+-..|.. -|+.+-.+|+.+-|..
T Consensus 103 ~e~p~~~~~~~~e~~~s~~~~k~~~~~r~~~~l~~~l~~ll~eAN~lfar----g~~eeA~~i~~EvIkqdp~~~~ay~t 178 (895)
T KOG2076|consen 103 YEEPEGLKQFKGEGEKSTGTKKRGRRSRGKSKLAPELRQLLGEANNLFAR----GDLEEAEEILMEVIKQDPRNPIAYYT 178 (895)
T ss_pred cccCchhhhhhhhheecccCCccCCCCCcccccCHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCccchhhHHH
Confidence 34555565555555555442222221 121 55566555555543 4555555555555532
Q ss_pred ----c---CCH--HHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 130 ----C---IDA--QVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 130 ----~---~d~--~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
. +|- .-.|-++.++-+-... .||..||.+.+..|++.+|.-.|.+.|+.+-.=
T Consensus 179 L~~IyEqrGd~eK~l~~~llAAHL~p~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 179 LGEIYEQRGDIEKALNFWLLAAHLNPKDY-ELWKRLADLSEQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence 1 222 2344556666666666 999999999999999999999999999977543
No 104
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=23.80 E-value=6.5e+02 Score=24.11 Aligned_cols=116 Identities=10% Similarity=0.121 Sum_probs=64.9
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc-CCH---HHHHH----HH
Q 017043 69 GDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC-IDA---QVIFS----FL 140 (378)
Q Consensus 69 gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~-~d~---~~if~----~L 140 (378)
.+|+...=--|+. .-..|-.+ .....+..+++++..|....++..=.+.+.-==...+.. .|+ .+.|. +.
T Consensus 68 ~~~~~~Aa~~~~~-Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y 145 (282)
T PF14938_consen 68 LGDKFEAAKAYEE-AANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELY 145 (282)
T ss_dssp TT-HHHHHHHHHH-HHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3555444333433 22233322 223467788888888877766655444433222212122 344 33333 33
Q ss_pred HHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc-CCchHH
Q 017043 141 DANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN-AQPTEK 186 (378)
Q Consensus 141 ~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~-A~P~~r 186 (378)
...+--...+..+...|.++-..|+|.+|.++|+.-+... -.|+.+
T Consensus 146 ~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 146 EQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 4455556778999999999999999999999999776643 345443
No 105
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=23.63 E-value=4.1e+02 Score=25.53 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHcCC----CC--C-CCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHHHHHHHHHHCCcc
Q 017043 74 QPWLECIKWVQEAFPA----GG--D-SSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIG 146 (378)
Q Consensus 74 ~~w~~YI~W~~~~yp~----g~--~-~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~if~~L~~~~IG 146 (378)
+.+..=++|++++|-- +. . ..+...+--+|++.+..-----++.-|+.-++.+++.. .+..|
T Consensus 50 ~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l-----------~~e~~ 118 (278)
T PF08631_consen 50 DKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLL-----------ESEYG 118 (278)
T ss_pred CChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----------HHhCC
Confidence 5566778888877643 21 1 23444444444444443333333444444455555432 66777
Q ss_pred hHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC---CchHHHHHHHHHHH
Q 017043 147 KTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA---QPTEKLKDAYKKFL 195 (378)
Q Consensus 147 ~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A---~P~~rL~~~~~~F~ 195 (378)
.+..+|+-....+.- .++...+++++..-|..-- .+++-+...++.|.
T Consensus 119 ~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~ 169 (278)
T PF08631_consen 119 NKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLA 169 (278)
T ss_pred CCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 766666665555555 7778888888888887643 45555555554443
No 106
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=22.90 E-value=4.7e+02 Score=23.05 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=23.2
Q ss_pred CCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc
Q 017043 93 SSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN 129 (378)
Q Consensus 93 ~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~ 129 (378)
+..|.+||.=|+ +|-.||||..+.+..++.
T Consensus 73 e~~L~piL~Fl~-------k~i~~pr~~~~l~~v~~~ 102 (148)
T PF09384_consen 73 EESLEPILKFLI-------KNITDPRYTRILVDVANI 102 (148)
T ss_pred HHHHHHHHHHHH-------HhCCCcccHHHHHHHHHH
Confidence 456888887776 444589999999999964
No 107
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=22.28 E-value=1.9e+02 Score=17.36 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=19.5
Q ss_pred HHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 157 ALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 157 A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
=..+...|++.+|.++|..=.+.+-.|
T Consensus 7 i~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 7 IDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 345667788999999988766665554
Done!