Query 017043
Match_columns 378
No_of_seqs 189 out of 291
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:59:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aez_C MAD3, mitotic spindle c 100.0 8.3E-68 2.8E-72 494.3 23.2 192 10-201 8-201 (223)
2 2wvi_A Mitotic checkpoint seri 100.0 3.4E-56 1.2E-60 399.3 16.0 149 56-204 2-150 (164)
3 4a1g_A Mitotic checkpoint seri 100.0 3.4E-55 1.2E-59 388.2 14.0 143 56-200 9-151 (152)
4 3esl_A Checkpoint serine/threo 100.0 1.3E-54 4.4E-59 399.6 12.9 154 50-203 5-168 (202)
5 4h7y_A Dual specificity protei 99.3 2E-11 6.8E-16 107.9 12.5 116 74-195 14-139 (161)
6 4ggd_C Mitotic checkpoint seri 98.5 1.6E-08 5.4E-13 61.3 0.3 23 16-38 1-23 (26)
7 2ond_A Cleavage stimulation fa 97.7 0.00034 1.1E-08 65.3 12.8 116 73-199 8-148 (308)
8 4e6h_A MRNA 3'-END-processing 97.6 0.00039 1.3E-08 74.2 11.9 115 73-199 302-448 (679)
9 2ooe_A Cleavage stimulation fa 96.8 0.0076 2.6E-07 60.3 11.6 127 53-195 28-175 (530)
10 2ooe_A Cleavage stimulation fa 96.8 0.011 3.8E-07 59.1 12.6 116 73-199 230-370 (530)
11 4e6h_A MRNA 3'-END-processing 96.7 0.007 2.4E-07 64.5 11.2 105 60-179 332-463 (679)
12 2uy1_A Cleavage stimulation fa 96.2 0.0083 2.8E-07 61.0 7.6 69 121-194 173-255 (493)
13 2uy1_A Cleavage stimulation fa 96.2 0.055 1.9E-06 54.9 13.5 42 59-106 201-242 (493)
14 2ond_A Cleavage stimulation fa 95.6 0.025 8.4E-07 52.5 7.3 111 59-180 38-164 (308)
15 4h7y_A Dual specificity protei 87.8 1.8 6.1E-05 38.1 7.9 75 121-197 14-106 (161)
16 3rkv_A Putative peptidylprolyl 80.3 12 0.00041 30.2 9.7 83 116-200 59-147 (162)
17 3edt_B KLC 2, kinesin light ch 80.2 8.4 0.00029 32.9 9.1 85 94-179 18-114 (283)
18 3c1d_A Protein ORAA, regulator 79.3 15 0.00053 31.4 10.4 50 96-150 49-99 (159)
19 3d5l_A Regulatory protein RECX 78.5 8.4 0.00029 35.0 8.8 94 96-197 95-191 (221)
20 3e3v_A Regulatory protein RECX 77.0 10 0.00036 33.2 8.7 94 96-197 52-148 (177)
21 2ho1_A Type 4 fimbrial biogene 76.1 16 0.00055 31.1 9.6 80 94-182 88-173 (252)
22 3ma5_A Tetratricopeptide repea 75.8 3.1 0.00011 31.5 4.4 62 116-179 3-70 (100)
23 3k9i_A BH0479 protein; putativ 74.5 10 0.00035 29.0 7.2 80 96-183 9-94 (117)
24 3u3w_A Transcriptional activat 73.5 44 0.0015 29.8 12.3 85 95-179 133-225 (293)
25 1na0_A Designed protein CTPR3; 73.2 16 0.00056 26.6 7.9 76 95-181 27-108 (125)
26 2xev_A YBGF; tetratricopeptide 72.7 25 0.00084 26.5 9.1 52 130-181 55-107 (129)
27 3dfg_A Xcrecx, regulatory prot 72.5 23 0.00078 30.5 9.6 51 96-151 51-102 (162)
28 3nf1_A KLC 1, kinesin light ch 71.8 8.9 0.0003 33.5 7.0 84 95-179 129-224 (311)
29 2dba_A Smooth muscle cell asso 71.4 7.4 0.00025 30.0 5.8 62 119-182 64-131 (148)
30 2fbn_A 70 kDa peptidylprolyl i 70.8 21 0.00072 29.7 8.9 50 131-182 105-154 (198)
31 2kck_A TPR repeat; tetratricop 70.2 13 0.00044 26.8 6.6 52 131-182 57-109 (112)
32 3edt_B KLC 2, kinesin light ch 69.2 12 0.0004 32.0 7.0 88 91-179 99-198 (283)
33 2fo7_A Synthetic consensus TPR 68.9 14 0.00048 27.2 6.7 75 95-180 53-133 (136)
34 3ro3_A PINS homolog, G-protein 68.4 25 0.00086 26.7 8.3 85 92-179 64-158 (164)
35 3ieg_A DNAJ homolog subfamily 67.9 11 0.00038 33.4 6.8 80 95-181 252-337 (359)
36 3q15_A PSP28, response regulat 67.8 27 0.00091 32.4 9.7 81 95-179 279-365 (378)
37 3ro3_A PINS homolog, G-protein 67.4 22 0.00075 27.1 7.7 32 148-179 87-118 (164)
38 2pl2_A Hypothetical conserved 67.2 9 0.00031 33.0 5.9 63 116-181 114-182 (217)
39 4i17_A Hypothetical protein; T 66.6 14 0.00049 31.3 7.1 76 96-180 61-147 (228)
40 2kat_A Uncharacterized protein 66.5 31 0.0011 25.8 8.4 48 131-180 36-83 (115)
41 2lni_A Stress-induced-phosphop 66.4 35 0.0012 25.3 8.6 48 132-181 68-115 (133)
42 2w2u_A Hypothetical P60 katani 65.7 27 0.00094 26.9 7.8 53 148-200 17-78 (83)
43 4gco_A Protein STI-1; structur 65.6 18 0.0006 28.6 7.0 48 131-180 64-111 (126)
44 3nf1_A KLC 1, kinesin light ch 65.6 14 0.00048 32.1 6.9 85 94-179 86-182 (311)
45 2fo7_A Synthetic consensus TPR 65.1 24 0.00081 25.9 7.3 51 131-183 52-102 (136)
46 3as5_A MAMA; tetratricopeptide 65.0 14 0.00047 29.2 6.2 78 94-182 59-142 (186)
47 3gyz_A Chaperone protein IPGC; 64.6 19 0.00066 29.9 7.3 64 115-180 31-100 (151)
48 2vq2_A PILW, putative fimbrial 64.0 30 0.001 28.3 8.4 47 133-181 132-178 (225)
49 3mkr_A Coatomer subunit epsilo 64.0 39 0.0013 30.7 9.9 66 118-185 167-235 (291)
50 2ho1_A Type 4 fimbrial biogene 62.9 49 0.0017 27.9 9.8 67 115-183 136-208 (252)
51 2v6y_A AAA family ATPase, P60 62.8 34 0.0011 26.3 7.8 55 149-203 10-73 (83)
52 1elw_A TPR1-domain of HOP; HOP 62.6 40 0.0014 24.2 8.8 49 132-182 56-104 (118)
53 3uq3_A Heat shock protein STI1 60.4 41 0.0014 28.1 8.8 87 94-182 55-171 (258)
54 2cpt_A SKD1 protein, vacuolar 60.4 17 0.00058 30.0 6.0 54 148-201 16-79 (117)
55 2v6x_A Vacuolar protein sortin 59.3 27 0.00093 26.7 6.7 53 148-200 11-72 (85)
56 1ihg_A Cyclophilin 40; ppiase 59.1 48 0.0016 31.6 9.9 84 96-181 242-338 (370)
57 4a5x_A MITD1, MIT domain-conta 59.0 37 0.0013 26.3 7.4 53 147-199 13-74 (86)
58 2xcb_A PCRH, regulatory protei 58.9 19 0.00066 28.4 6.1 26 153-178 89-114 (142)
59 1xnf_A Lipoprotein NLPI; TPR, 58.6 23 0.00077 30.3 6.9 31 150-180 111-141 (275)
60 1hh8_A P67PHOX, NCF-2, neutrop 57.4 33 0.0011 28.3 7.6 80 94-182 54-153 (213)
61 1elr_A TPR2A-domain of HOP; HO 57.4 53 0.0018 24.0 10.1 44 150-195 79-122 (131)
62 1a17_A Serine/threonine protei 56.7 24 0.00081 27.6 6.2 35 148-182 79-113 (166)
63 3as5_A MAMA; tetratricopeptide 56.6 52 0.0018 25.6 8.3 75 95-180 94-174 (186)
64 3q49_B STIP1 homology and U bo 56.4 30 0.001 26.2 6.7 74 96-180 28-107 (137)
65 2q7f_A YRRB protein; TPR, prot 56.4 23 0.00078 29.6 6.4 77 95-182 75-157 (243)
66 2e2e_A Formate-dependent nitri 55.4 49 0.0017 26.6 8.2 79 94-183 61-148 (177)
67 3upv_A Heat shock protein STI1 54.8 45 0.0015 25.2 7.4 48 131-180 55-102 (126)
68 1a17_A Serine/threonine protei 54.3 48 0.0016 25.7 7.7 46 131-176 98-143 (166)
69 2kc7_A BFR218_protein; tetratr 53.7 50 0.0017 23.7 7.2 52 131-184 17-69 (99)
70 2ifu_A Gamma-SNAP; membrane fu 52.7 57 0.002 29.4 8.9 84 94-180 93-185 (307)
71 4g1t_A Interferon-induced prot 52.4 58 0.002 30.6 9.2 124 53-180 31-168 (472)
72 1wfd_A Hypothetical protein 15 52.0 54 0.0019 25.6 7.4 53 148-200 13-74 (93)
73 3hym_B Cell division cycle pro 51.5 13 0.00044 32.7 4.1 30 150-179 270-299 (330)
74 3uq3_A Heat shock protein STI1 51.2 1E+02 0.0036 25.5 10.1 66 115-182 134-205 (258)
75 1hxi_A PEX5, peroxisome target 51.1 18 0.00062 28.2 4.6 75 95-180 35-115 (121)
76 3u3w_A Transcriptional activat 50.7 1.3E+02 0.0045 26.5 12.4 85 92-178 170-265 (293)
77 2vgx_A Chaperone SYCD; alterna 50.6 31 0.001 27.9 6.1 24 155-178 94-117 (148)
78 3sz7_A HSC70 cochaperone (SGT) 50.6 93 0.0032 24.7 11.5 95 96-201 30-131 (164)
79 3ulq_A Response regulator aspa 50.1 1.1E+02 0.0038 28.0 10.6 47 133-179 322-368 (383)
80 2r5s_A Uncharacterized protein 49.0 52 0.0018 26.8 7.3 49 133-183 93-141 (176)
81 3gyz_A Chaperone protein IPGC; 48.9 30 0.001 28.7 5.8 86 95-193 54-145 (151)
82 3mkr_A Coatomer subunit epsilo 48.8 53 0.0018 29.8 8.0 26 154-179 134-159 (291)
83 3qky_A Outer membrane assembly 48.7 58 0.002 28.1 8.0 87 95-182 70-180 (261)
84 3k9i_A BH0479 protein; putativ 48.6 36 0.0012 25.8 5.9 54 130-183 6-60 (117)
85 2vyi_A SGTA protein; chaperone 45.6 84 0.0029 22.8 9.1 46 133-180 65-110 (131)
86 1fch_A Peroxisomal targeting s 45.4 39 0.0013 30.3 6.5 77 96-181 200-282 (368)
87 4eqf_A PEX5-related protein; a 44.3 43 0.0015 30.3 6.6 74 95-179 83-162 (365)
88 3ro2_A PINS homolog, G-protein 44.1 79 0.0027 27.2 8.1 83 95-180 241-333 (338)
89 1xnf_A Lipoprotein NLPI; TPR, 44.1 1.4E+02 0.0049 25.0 10.4 32 150-181 215-246 (275)
90 3u4t_A TPR repeat-containing p 44.1 1.1E+02 0.0036 26.0 8.9 45 133-179 93-137 (272)
91 2xcb_A PCRH, regulatory protei 44.0 1E+02 0.0035 24.0 8.2 50 131-182 35-84 (142)
92 2vgx_A Chaperone SYCD; alterna 44.0 49 0.0017 26.6 6.3 48 132-181 39-86 (148)
93 2y4t_A DNAJ homolog subfamily 44.0 41 0.0014 31.2 6.6 78 96-181 276-360 (450)
94 3gw4_A Uncharacterized protein 43.7 1.2E+02 0.0042 24.2 11.1 83 94-179 83-176 (203)
95 3vtx_A MAMA; tetratricopeptide 43.5 89 0.0031 25.0 7.9 36 145-180 102-137 (184)
96 4gcn_A Protein STI-1; structur 42.3 58 0.002 25.3 6.3 35 149-183 82-116 (127)
97 3fp2_A TPR repeat-containing p 42.2 1.5E+02 0.005 28.1 10.3 92 95-188 396-500 (537)
98 3ro2_A PINS homolog, G-protein 42.1 73 0.0025 27.4 7.5 82 95-179 201-292 (338)
99 3u4t_A TPR repeat-containing p 42.0 1.2E+02 0.0041 25.7 8.9 32 149-180 220-251 (272)
100 2xpi_A Anaphase-promoting comp 41.8 1.6E+02 0.0056 28.3 10.8 30 150-179 516-545 (597)
101 1na0_A Designed protein CTPR3; 41.6 95 0.0032 22.2 7.5 48 132-181 27-74 (125)
102 1na3_A Designed protein CTPR2; 40.5 44 0.0015 23.2 4.9 31 150-180 9-39 (91)
103 2r5s_A Uncharacterized protein 40.5 23 0.00079 29.0 3.8 75 96-179 93-173 (176)
104 4abn_A Tetratricopeptide repea 40.0 1.4E+02 0.0047 29.1 10.0 76 94-181 120-210 (474)
105 4a1s_A PINS, partner of inscut 38.9 93 0.0032 28.4 8.1 87 91-180 277-373 (411)
106 1w3b_A UDP-N-acetylglucosamine 38.6 59 0.002 29.7 6.7 49 130-180 117-165 (388)
107 1na3_A Designed protein CTPR2; 38.6 65 0.0022 22.2 5.6 48 132-181 27-74 (91)
108 4i17_A Hypothetical protein; T 38.5 1.2E+02 0.0041 25.3 8.2 50 131-182 59-108 (228)
109 2gw1_A Mitochondrial precursor 37.7 1.2E+02 0.004 28.4 8.7 89 95-185 390-484 (514)
110 2kck_A TPR repeat; tetratricop 37.3 53 0.0018 23.3 5.0 33 150-182 40-72 (112)
111 2ifu_A Gamma-SNAP; membrane fu 37.3 1.6E+02 0.0054 26.4 9.3 84 91-177 129-222 (307)
112 1fch_A Peroxisomal targeting s 37.2 58 0.002 29.1 6.3 55 128-182 195-249 (368)
113 2bn5_A PSI; nuclear protein, s 37.2 25 0.00086 22.8 2.6 21 154-174 6-26 (33)
114 4ga2_A E3 SUMO-protein ligase 37.0 72 0.0024 25.5 6.2 35 147-181 62-96 (150)
115 2v5f_A Prolyl 4-hydroxylase su 36.4 1.3E+02 0.0045 22.6 7.5 37 145-181 41-77 (104)
116 3sf4_A G-protein-signaling mod 36.2 1.3E+02 0.0043 27.0 8.4 82 95-179 205-296 (406)
117 2y4t_A DNAJ homolog subfamily 36.0 57 0.002 30.2 6.2 62 119-182 59-126 (450)
118 2yhc_A BAMD, UPF0169 lipoprote 35.9 1.8E+02 0.006 24.6 9.0 34 149-182 146-179 (225)
119 2pm7_A Protein WEB1, protein t 35.6 65 0.0022 31.9 6.7 102 72-175 225-361 (399)
120 2kat_A Uncharacterized protein 35.6 68 0.0023 23.8 5.6 35 149-183 18-52 (115)
121 2q7f_A YRRB protein; TPR, prot 35.4 1.5E+02 0.0051 24.4 8.2 78 94-182 108-191 (243)
122 3sf4_A G-protein-signaling mod 35.0 1.3E+02 0.0044 27.0 8.3 82 95-179 245-336 (406)
123 4a1s_A PINS, partner of inscut 34.9 1.1E+02 0.0037 27.9 7.8 82 95-179 241-332 (411)
124 1wao_1 Serine/threonine protei 33.8 72 0.0025 31.4 6.8 75 96-181 25-105 (477)
125 2vyi_A SGTA protein; chaperone 33.7 1.3E+02 0.0045 21.6 10.1 33 150-182 46-78 (131)
126 2dl1_A Spartin; SPG20, MIT, st 33.6 50 0.0017 27.4 4.6 32 147-178 19-50 (116)
127 1xi4_A Clathrin heavy chain; a 33.0 2.3E+02 0.0077 33.3 11.2 108 59-176 1091-1221(1630)
128 4gcn_A Protein STI-1; structur 32.9 59 0.002 25.3 4.9 32 149-180 7-38 (127)
129 2xpi_A Anaphase-promoting comp 32.7 46 0.0016 32.3 5.1 27 152-178 409-435 (597)
130 2dwk_A Protein RUFY3; RUN doma 32.7 17 0.00058 32.0 1.7 58 102-161 88-145 (180)
131 4abn_A Tetratricopeptide repea 31.5 60 0.0021 31.7 5.7 53 130-182 237-290 (474)
132 1p5q_A FKBP52, FK506-binding p 30.9 1.5E+02 0.0052 27.3 8.2 85 96-182 166-262 (336)
133 3qky_A Outer membrane assembly 30.8 83 0.0028 27.1 6.0 50 130-181 68-128 (261)
134 3hym_B Cell division cycle pro 30.7 2E+02 0.0069 24.7 8.6 76 96-182 110-191 (330)
135 3urz_A Uncharacterized protein 30.6 1.4E+02 0.0047 25.0 7.3 50 131-182 71-120 (208)
136 3sz7_A HSC70 cochaperone (SGT) 30.4 83 0.0028 25.0 5.6 49 132-182 29-77 (164)
137 3ma5_A Tetratricopeptide repea 30.4 65 0.0022 23.8 4.6 33 150-182 7-39 (100)
138 4gco_A Protein STI-1; structur 30.2 68 0.0023 25.0 4.9 33 148-180 11-43 (126)
139 2l6j_A TPR repeat-containing p 28.6 68 0.0023 23.0 4.4 32 150-181 4-35 (111)
140 4gyw_A UDP-N-acetylglucosamine 28.5 80 0.0027 33.4 6.4 64 116-181 73-142 (723)
141 2c2l_A CHIP, carboxy terminus 27.8 2.1E+02 0.0071 25.4 8.3 46 133-180 57-102 (281)
142 3q49_B STIP1 homology and U bo 27.7 1.1E+02 0.0037 22.9 5.6 48 133-182 28-75 (137)
143 1qqe_A Vesicular transport pro 27.2 2.5E+02 0.0085 24.8 8.8 32 148-179 75-106 (292)
144 1elw_A TPR1-domain of HOP; HOP 27.0 1.2E+02 0.004 21.5 5.4 34 149-182 37-70 (118)
145 1yqf_A Hypothetical protein LM 26.8 54 0.0018 29.3 4.0 31 134-164 160-190 (203)
146 3vtx_A MAMA; tetratricopeptide 26.6 2.4E+02 0.0081 22.3 12.5 74 96-180 92-171 (184)
147 2qfc_A PLCR protein; TPR, HTH, 26.6 3.2E+02 0.011 23.9 10.0 30 151-180 197-226 (293)
148 3cv0_A Peroxisome targeting si 26.3 1.1E+02 0.0037 26.5 5.9 100 69-180 14-119 (327)
149 3fp2_A TPR repeat-containing p 26.2 4E+02 0.014 24.9 10.5 84 87-181 286-375 (537)
150 2lni_A Stress-induced-phosphop 26.1 1.7E+02 0.0059 21.2 6.4 33 150-182 50-82 (133)
151 2gw1_A Mitochondrial precursor 25.9 1.8E+02 0.0062 27.1 7.8 52 130-183 55-106 (514)
152 3jv1_A P22 protein; MAM33 fami 25.4 56 0.0019 28.7 3.8 30 134-163 139-168 (182)
153 1elr_A TPR2A-domain of HOP; HO 25.1 1.3E+02 0.0043 21.8 5.4 32 149-180 37-68 (131)
154 1p32_A Mitochondrial matrix pr 25.1 56 0.0019 29.3 3.8 30 134-163 164-193 (209)
155 3ulq_A Response regulator aspa 24.6 3.1E+02 0.011 24.9 9.1 82 95-178 161-252 (383)
156 3eab_A Spastin; spastin, MIT, 24.6 62 0.0021 25.6 3.5 32 147-178 13-47 (89)
157 1qqe_A Vesicular transport pro 24.5 2.7E+02 0.0092 24.6 8.4 32 148-179 115-147 (292)
158 1w3b_A UDP-N-acetylglucosamine 24.5 3.9E+02 0.013 24.0 11.5 45 133-179 256-300 (388)
159 3urz_A Uncharacterized protein 24.4 1.9E+02 0.0064 24.2 7.0 34 150-183 54-87 (208)
160 2l6j_A TPR repeat-containing p 23.1 1.4E+02 0.0049 21.1 5.3 49 132-182 22-70 (111)
161 1hh8_A P67PHOX, NCF-2, neutrop 23.1 2.5E+02 0.0086 22.7 7.4 48 131-180 54-101 (213)
162 4ga2_A E3 SUMO-protein ligase 23.0 1.2E+02 0.004 24.1 5.2 41 142-182 23-63 (150)
163 4eqf_A PEX5-related protein; a 22.9 2.5E+02 0.0087 25.0 8.0 51 130-182 229-279 (365)
164 3ieg_A DNAJ homolog subfamily 22.6 2.1E+02 0.0073 24.8 7.2 49 131-181 54-102 (359)
165 3ly7_A Transcriptional activat 22.6 5.4E+02 0.019 25.0 11.1 83 98-183 258-343 (372)
166 3rkv_A Putative peptidylprolyl 22.5 1.1E+02 0.0038 24.2 4.9 32 148-179 9-40 (162)
167 3qou_A Protein YBBN; thioredox 21.4 3.1E+02 0.011 24.2 8.3 65 116-182 185-251 (287)
168 3cv0_A Peroxisome targeting si 20.7 2.9E+02 0.01 23.6 7.7 50 130-181 37-86 (327)
169 1wty_A Hypothetical protein TT 20.6 1.5E+02 0.0052 23.7 5.3 68 94-174 25-99 (119)
170 3upv_A Heat shock protein STI1 20.1 1.9E+02 0.0064 21.5 5.6 48 133-182 23-70 (126)
No 1
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.3e-68 Score=494.26 Aligned_cols=192 Identities=31% Similarity=0.562 Sum_probs=182.4
Q ss_pred hccCCchhhhhcCcCccCCCCCCCHHHHHHHhccCCchhhhhhHHHHHHHHHHHHhh-cCCCCCcHHHHHHHHHHHHHcC
Q 017043 10 SKKETGNEWELFKENVRPLKRGRNIRLLNDALASHNSFHLKKSLLDNRRRLIEAIDK-YEGDDPLQPWLECIKWVQEAFP 88 (378)
Q Consensus 10 ~~~~~~~~~E~~KENiqPL~~GRs~~~L~~al~~~~~~~~~~~l~~~~~~~~~~i~~-~~gdDPL~~w~~YI~W~~~~yp 88 (378)
....+.++||++|||||||++||||++|+.+|+++.+...+..+.++|+.||++|.+ ++|||||++|++||+|++++||
T Consensus 8 ~~~~~~~~~E~~KENIqPLr~GRs~~~L~~~l~~~~~~~~~~~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP 87 (223)
T 4aez_C 8 KNWVHMDVIEQSKENIEPRKAGHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFP 87 (223)
T ss_dssp -CCEEHHHHHHTGGGCCCCTTCCCHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCT
T ss_pred CCCCChHHHhcchhhcCcccCCCCHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCc
Confidence 446778899999999999999999999999999877666778999999999999998 4899999999999999999999
Q ss_pred CCCC-CCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChH
Q 017043 89 AGGD-SSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMK 167 (378)
Q Consensus 89 ~g~~-~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~ 167 (378)
+|++ +|+|..||||||++|+++++||||+|||||||+||++|++|.+||.||+++|||++||+|||+||.+||.+|+|+
T Consensus 88 ~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~ 167 (223)
T 4aez_C 88 QGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQ 167 (223)
T ss_dssp TCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHH
T ss_pred CCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHH
Confidence 9975 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhc
Q 017043 168 AANDLFSLGISRNAQPTEKLKDAYKKFLVRSMRK 201 (378)
Q Consensus 168 ~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~~~ 201 (378)
+|++||++||+++|+|+++|+++|.+|+.||+.+
T Consensus 168 ~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R~~~~ 201 (223)
T 4aez_C 168 KADEVYQKGKRMKAKPFLRFQQKYQQFTHRWLEF 201 (223)
T ss_dssp HHHHHHHHHHHHTCBSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999996654
No 2
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=100.00 E-value=3.4e-56 Score=399.26 Aligned_cols=149 Identities=30% Similarity=0.645 Sum_probs=141.2
Q ss_pred HHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHHH
Q 017043 56 NRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQV 135 (378)
Q Consensus 56 ~~~~~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~ 135 (378)
+|+.||.+|..|+|||||++|++||+|++++||+|+.+|+|..||||||++|+++++||||+|||||||+||++|++|.+
T Consensus 2 ~r~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~~p~~ 81 (164)
T 2wvi_A 2 QKRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPLD 81 (164)
T ss_dssp CTHHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSCHHH
T ss_pred hHHHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCCHHH
Confidence 36789999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhhcccC
Q 017043 136 IFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSMRKTQV 204 (378)
Q Consensus 136 if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~~~~~~ 204 (378)
||.||+++|||++||+||++||.+||.+|+|++|++||++||+++|+|+++|+++|++|+.||++++..
T Consensus 82 if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~~~~~~~ 150 (164)
T 2wvi_A 82 MYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARVSRQTLL 150 (164)
T ss_dssp HHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999998653
No 3
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=100.00 E-value=3.4e-55 Score=388.25 Aligned_cols=143 Identities=31% Similarity=0.602 Sum_probs=136.9
Q ss_pred HHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhccCCHHH
Q 017043 56 NRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQV 135 (378)
Q Consensus 56 ~~~~~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~ 135 (378)
.|+.||.+|++|+|||||++|++||+|++++||+|+ ++|..||||||++|+++++||||+|||||||+||++|+||.+
T Consensus 9 ~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~--~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~dp~~ 86 (152)
T 4a1g_A 9 VLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK--EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDLHQ 86 (152)
T ss_dssp HHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT--HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSCHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCCHHH
Confidence 466799999999999999999999999999999885 359999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHhh
Q 017043 136 IFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSMR 200 (378)
Q Consensus 136 if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~~ 200 (378)
||.||+++|||++||+||++||.+||.+|+|++|++||++||+++|+|+++|+++|++|+.||+.
T Consensus 87 if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R~~~ 151 (152)
T 4a1g_A 87 FFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQTRLTE 151 (152)
T ss_dssp HHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999763
No 4
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-54 Score=399.63 Aligned_cols=154 Identities=19% Similarity=0.398 Sum_probs=149.4
Q ss_pred hhhHHHHHHHHHHHHhh--cCCCCCcHHHHHHHHHHHHHcCCCCC--CCcHH-HHHHHHHHHhcccccccchhhHHHHHH
Q 017043 50 KKSLLDNRRRLIEAIDK--YEGDDPLQPWLECIKWVQEAFPAGGD--SSGLV-VIYEQCVRRFWHSQCYKDDLRYLNVWL 124 (378)
Q Consensus 50 ~~~l~~~~~~~~~~i~~--~~gdDPL~~w~~YI~W~~~~yp~g~~--~s~L~-~lLErc~~~f~~~e~YknD~RyLkiWl 124 (378)
.+.|.++|+.||.+|.+ |+|||||++|++||+|++++||+|+. +|+|+ .||||||++|+++++||||+|||||||
T Consensus 5 ~~~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl 84 (202)
T 3esl_A 5 HSQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWI 84 (202)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHH
Confidence 36788899999999998 99999999999999999999999987 78999 999999999999999999999999999
Q ss_pred HHhhc--cC---CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 017043 125 EYAEN--CI---DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSM 199 (378)
Q Consensus 125 ~Ya~~--~~---d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~ 199 (378)
+||++ |+ +|.+||.||+++|||++||+|||+||.+||.+|+|++|++||++||+++|+|+++|+++|++|+.||+
T Consensus 85 ~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R~~ 164 (202)
T 3esl_A 85 WYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDRLR 164 (202)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHH
Confidence 99999 66 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc
Q 017043 200 RKTQ 203 (378)
Q Consensus 200 ~~~~ 203 (378)
+.++
T Consensus 165 ~~~~ 168 (202)
T 3esl_A 165 EMNI 168 (202)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 9988
No 5
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.30 E-value=2e-11 Score=107.88 Aligned_cols=116 Identities=22% Similarity=0.307 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHcCCCCCC-----CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc-----cCCHHHHHHHHHHC
Q 017043 74 QPWLECIKWVQEAFPAGGDS-----SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN-----CIDAQVIFSFLDAN 143 (378)
Q Consensus 74 ~~w~~YI~W~~~~yp~g~~~-----s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~-----~~d~~~if~~L~~~ 143 (378)
|.|+.|+.=+|.+ |... ..+..++||++...--.. ++...||+.|||.||.+ .++++++|+.+.+.
T Consensus 14 d~W~~yl~llE~~---g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKN---SVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp HHHHHHHHHHHHH---TCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7899999999986 3332 457789999999888875 99999999999999965 34569999999885
Q ss_pred CcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 017043 144 DIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFL 195 (378)
Q Consensus 144 ~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~ 195 (378)
+.++|.+|+.||++--.+|++..|.+|+..||..++.|.+.|+.+.+..+
T Consensus 90 --hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 90 --CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN 139 (161)
T ss_dssp --CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence 88999999999999999999999999999999999999999999988765
No 6
>4ggd_C Mitotic checkpoint serine/threonine-protein kinas beta; cell cycle, mitosis, securin, ubiquitination, WD40; 2.44A {Homo sapiens}
Probab=98.50 E-value=1.6e-08 Score=61.27 Aligned_cols=23 Identities=57% Similarity=1.018 Sum_probs=21.2
Q ss_pred hhhhhcCcCccCCCCCCCHHHHH
Q 017043 16 NEWELFKENVRPLKRGRNIRLLN 38 (378)
Q Consensus 16 ~~~E~~KENiqPL~~GRs~~~L~ 38 (378)
+|||+.||||||||+||-++.|+
T Consensus 1 dewel~kenvqplrqgrim~tlq 23 (26)
T 4ggd_C 1 DEWELSKENVQPLRQGRIMSTLQ 23 (26)
T ss_pred Cccccchhccchhhccchhhhhc
Confidence 58999999999999999998875
No 7
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.72 E-value=0.00034 Score=65.30 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCC-----CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc----------CC-----
Q 017043 73 LQPWLECIKWVQEAFPAGGDS-----SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC----------ID----- 132 (378)
Q Consensus 73 L~~w~~YI~W~~~~yp~g~~~-----s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~----------~d----- 132 (378)
+..|..||+|-.. .|.+... ...+.++++|+.. +|.+..+|+.|+.++ .+
T Consensus 8 ~~~W~~yi~~E~~-~~~~~~~~~~~~~~a~~~~~~al~~---------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~ 77 (308)
T 2ond_A 8 VDMWKKYIQWEKS-NPLRTEDQTLITKRVMFAYEQCLLV---------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 77 (308)
T ss_dssp HHHHHHHHHHHHT-CTTCCCCHHHHHHHHHHHHHHHHHH---------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHh-CcccCCchHHHHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHhchhhhhccchhhcc
Confidence 5799999999554 4554332 2334678888755 577788999999764 33
Q ss_pred -----HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 017043 133 -----AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSM 199 (378)
Q Consensus 133 -----~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~ 199 (378)
+..+|.--... +....+.+|..++.+++..|++++|..+|+.+|...-.-.+.+...+..|..|..
T Consensus 78 ~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 148 (308)
T 2ond_A 78 LFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE 148 (308)
T ss_dssp HHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc
Confidence 34555444331 3556788999999999999999999999999998543212225566666665543
No 8
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.55 E-value=0.00039 Score=74.21 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHHcCCCCCCC----cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc------CCHH-HHHHHHH
Q 017043 73 LQPWLECIKWVQEAFPAGGDSS----GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC------IDAQ-VIFSFLD 141 (378)
Q Consensus 73 L~~w~~YI~W~~~~yp~g~~~s----~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~------~d~~-~if~~L~ 141 (378)
+..|..||.|-++ -|.+-... -+..++|+|+..|-. |=++|+.||.++ .+++ +||.--.
T Consensus 302 l~lW~~yi~fEk~-~~~~l~~~~~~~Rv~~~Ye~aL~~~p~---------~~~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 302 LLIWLEWIRWESD-NKLELSDDLHKARMTYVYMQAAQHVCF---------APEIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp HHHHHHHHHHHHT-CTTCCCHHHHHHHHHHHHHHHHHHTTT---------CHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCccccchhhHHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6899999999664 45432221 235789999998755 568999999864 3454 7775443
Q ss_pred HCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc---------CCc------------hHHHHHHHHHHHHHHh
Q 017043 142 ANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN---------AQP------------TEKLKDAYKKFLVRSM 199 (378)
Q Consensus 142 ~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~---------A~P------------~~rL~~~~~~F~~R~~ 199 (378)
. ..-....+|..||.+.|..|++.+|.+||+..+..- ..| ...+--.|..|+.|..
T Consensus 372 ~--~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 372 Q--CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 2 112456899999999999999999999999999751 125 3345666777776653
No 9
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.79 E-value=0.0076 Score=60.31 Aligned_cols=127 Identities=13% Similarity=0.280 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc--
Q 017043 53 LLDNRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC-- 130 (378)
Q Consensus 53 l~~~~~~~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~-- 130 (378)
+.+.+..++.++..+ .+--..|..|+.+.... |.......+++||+..+ | -+.+|+.|+.+.
T Consensus 28 ~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~----~~~~~a~~~~~ral~~~---------p-~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 28 IDKARKTYERLVAQF--PSSGRFWKLYIEAEIKA----KNYDKVEKLFQRCLMKV---------L-HIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHTTTC---------C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcC---------C-ChHHHHHHHHHHHH
Confidence 334455566667744 33357899999998762 33345789999998653 2 145899999643
Q ss_pred -----CCHHH----HHHHHHHC-CcchHHHHHHHHHHHHHHH---------ccChHHHHHHHHHHHHccCCchHHHHHHH
Q 017043 131 -----IDAQV----IFSFLDAN-DIGKTHSVYYIAYALHMES---------KSKMKAANDLFSLGISRNAQPTEKLKDAY 191 (378)
Q Consensus 131 -----~d~~~----if~~L~~~-~IG~~~AlfYe~~A~~lE~---------~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~ 191 (378)
..+++ +|...... |+-.....+|..|+.++.. .|++.+|..||+.+|..--.+...+-..|
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~ 171 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDY 171 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 34455 66655432 2223457899999998876 79999999999999994334445676777
Q ss_pred HHHH
Q 017043 192 KKFL 195 (378)
Q Consensus 192 ~~F~ 195 (378)
..|.
T Consensus 172 ~~~e 175 (530)
T 2ooe_A 172 NKYE 175 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7775
No 10
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.78 E-value=0.011 Score=59.13 Aligned_cols=116 Identities=22% Similarity=0.360 Sum_probs=80.8
Q ss_pred cHHHHHHHHHHHHHcCCCCCCC-----cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc----------CC-----
Q 017043 73 LQPWLECIKWVQEAFPAGGDSS-----GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC----------ID----- 132 (378)
Q Consensus 73 L~~w~~YI~W~~~~yp~g~~~s-----~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~----------~d----- 132 (378)
+..|..||.|-..+ |.+.... ..+.++++|+..+ |.+..+|+.|+.++ ++
T Consensus 230 ~~~w~~~~~~e~~~-~~~~~~~~~~~~~a~~~y~~al~~~---------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 230 VDMWKKYIQWEKSN-PLRTEDQTLITKRVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp HHHHHHHHHHHHHC-SSCCSCSHHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHcC-CccCCcchhHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 58999999997653 3322121 3457899999764 44578999999864 22
Q ss_pred -----HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHh
Q 017043 133 -----AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFLVRSM 199 (378)
Q Consensus 133 -----~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~~R~~ 199 (378)
++.+|.--.. .+--..+.+|..||.+++..|++.+|..+|+..++..-.-...+--.|..|+.|..
T Consensus 300 ~~~~~A~~~~~~Al~-~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 300 LFSDEAANIYERAIS-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp HHHHHHHHHHHHHTT-TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhc
Confidence 3455554432 13345688999999999999999999999999998643212346666777766544
No 11
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.71 E-value=0.007 Score=64.55 Aligned_cols=105 Identities=10% Similarity=0.074 Sum_probs=69.0
Q ss_pred HHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHH-HHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCC
Q 017043 60 LIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLV-VIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CID 132 (378)
Q Consensus 60 ~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~-~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d 132 (378)
++.+|... ..+ =++|+.|++|.+.. | ...... .+|+|++..+-. ...||+.||++ ++.
T Consensus 332 Ye~aL~~~-p~~-~~lW~~ya~~~~~~---~-~~~~a~r~il~rAi~~~P~---------s~~Lwl~~a~~ee~~~~~e~ 396 (679)
T 4e6h_A 332 YMQAAQHV-CFA-PEIWFNMANYQGEK---N-TDSTVITKYLKLGQQCIPN---------SAVLAFSLSEQYELNTKIPE 396 (679)
T ss_dssp HHHHHHHT-TTC-HHHHHHHHHHHHHH---S-CCTTHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHc-CCC-HHHHHHHHHHHHhc---C-cHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhCCHHH
Confidence 55666643 223 48999999999875 2 222354 899999876533 24678888864 234
Q ss_pred HHHHHHHHHHC----------Ccc----------hHHHHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 133 AQVIFSFLDAN----------DIG----------KTHSVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 133 ~~~if~~L~~~----------~IG----------~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
+++||.-+... ++. ..++..|+.|+.+....|..+.|..||.++++.
T Consensus 397 aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 397 IETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56777755542 111 135667888888777777888888888888775
No 12
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.20 E-value=0.0083 Score=61.03 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=48.4
Q ss_pred HHHHHHhhcc-CCH------------HHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHH-
Q 017043 121 NVWLEYAENC-IDA------------QVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEK- 186 (378)
Q Consensus 121 kiWl~Ya~~~-~d~------------~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~r- 186 (378)
++|+.|+++. ++| ..+|.-..... -....+|..||.+++..|+..+|..||++||.. |-..
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~ 247 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMF 247 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHH
Confidence 4899999874 332 23455444322 233889999999999999999999999999998 5432
Q ss_pred HHHHHHHH
Q 017043 187 LKDAYKKF 194 (378)
Q Consensus 187 L~~~~~~F 194 (378)
|.-.|..|
T Consensus 248 l~~~y~~~ 255 (493)
T 2uy1_A 248 LSLYYGLV 255 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33344444
No 13
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.16 E-value=0.055 Score=54.91 Aligned_cols=42 Identities=7% Similarity=0.053 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Q 017043 59 RLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRR 106 (378)
Q Consensus 59 ~~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~ 106 (378)
-++.+|... ...-++|+.|++|..+. |.......+++|++..
T Consensus 201 ~ye~al~~~--p~~~~lW~~ya~~~~~~----~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 201 IHNYILDSF--YYAEEVYFFYSEYLIGI----GQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHT--TTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhC
Confidence 344455533 23368999999999763 2334567899999877
No 14
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.58 E-value=0.025 Score=52.48 Aligned_cols=111 Identities=15% Similarity=0.237 Sum_probs=77.5
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHHHc----CCCCC------CCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhh
Q 017043 59 RLIEAIDKYEGDDPLQPWLECIKWVQEAF----PAGGD------SSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAE 128 (378)
Q Consensus 59 ~~~~~i~~~~gdDPL~~w~~YI~W~~~~y----p~g~~------~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~ 128 (378)
.++.+|... .+-.++|+.|..|..+.- -.|.. ...-..+++|++..+ +|.+..+|+.|+.
T Consensus 38 ~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p~~~~~~~~~~~ 107 (308)
T 2ond_A 38 AYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TTTCHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------CcccHHHHHHHHH
Confidence 345555532 344689999999987531 12221 034678888888643 4667789999997
Q ss_pred cc------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 129 NC------IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 129 ~~------~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
+. ..+..+|.-.....-.. ....|..|+.++...|++.+|..+|+.+++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSSC-THHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHhcCCHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 53 45678888777643321 12379999999999999999999999999864
No 15
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.81 E-value=1.8 Score=38.15 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=57.9
Q ss_pred HHHHHHhhcc---CCH---------HHHHHHHHH------CCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 121 NVWLEYAENC---IDA---------QVIFSFLDA------NDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 121 kiWl~Ya~~~---~d~---------~~if~~L~~------~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
..|+.|+++. +|| +++|.--.+ ++--...+-+|+.||.+.|. ++..+|.+||+..+..+ +
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei-~D~d~aR~vy~~a~~~h-K 91 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAI-QEPDDARDYFQMARANC-K 91 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHH-HCGGGCHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHh-H
Confidence 4788888753 455 256664333 44457788999999998666 99999999999998864 4
Q ss_pred chHHHHHHHHHHHHH
Q 017043 183 PTEKLKDAYKKFLVR 197 (378)
Q Consensus 183 P~~rL~~~~~~F~~R 197 (378)
=...+--.|.+|+.|
T Consensus 92 kFAKiwi~~AqFEiR 106 (161)
T 4h7y_A 92 KFAFVHISFAQFELS 106 (161)
T ss_dssp TBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999999988
No 16
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=80.32 E-value=12 Score=30.20 Aligned_cols=83 Identities=12% Similarity=0.064 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHhhcc------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHH
Q 017043 116 DLRYLNVWLEYAENC------IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKD 189 (378)
Q Consensus 116 D~RyLkiWl~Ya~~~------~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~ 189 (378)
|+....+|...+.++ ..+...|...... ....+..|-..|..+...|+|.+|...|+.++.-.-.-...+..
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 136 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAR 136 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 566667777666432 3445555555543 44556667778888999999999999999999985443334555
Q ss_pred HHHHHHHHHhh
Q 017043 190 AYKKFLVRSMR 200 (378)
Q Consensus 190 ~~~~F~~R~~~ 200 (378)
.......++..
T Consensus 137 ~l~~~~~~~~~ 147 (162)
T 3rkv_A 137 EMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 17
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=80.20 E-value=8.4 Score=32.91 Aligned_cols=85 Identities=13% Similarity=0.013 Sum_probs=60.8
Q ss_pred CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHC------CcchHHHHHHHHHHHHHH
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDAN------DIGKTHSVYYIAYALHME 161 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~------~IG~~~AlfYe~~A~~lE 161 (378)
..-..++++++..+...-. .+++....+|...+.. ..++...|.-.... +--...+..|...|..+.
T Consensus 18 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSG-HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 96 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 3467888888887765432 2446777777777754 23455666654433 223566788899999999
Q ss_pred HccChHHHHHHHHHHHHc
Q 017043 162 SKSKMKAANDLFSLGISR 179 (378)
Q Consensus 162 ~~~~~~~A~~Iy~~Gi~~ 179 (378)
..|++.+|...|+.++..
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (283)
T 3edt_B 97 KRGKYKEAEPLCKRALEI 114 (283)
T ss_dssp TTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 999999999999999986
No 18
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=79.31 E-value=15 Score=31.37 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc-CCHHHHHHHHHHCCcchHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC-IDAQVIFSFLDANDIGKTHS 150 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~-~d~~~if~~L~~~~IG~~~A 150 (378)
+-.+|++|... .|-||.||-..|+..--.- --|..|-+-|..+||...+.
T Consensus 49 i~~vl~~l~~~-----g~ldD~rfA~~~v~~~~~~g~G~~~I~~eL~~KGI~~~~i 99 (159)
T 3c1d_A 49 YERVIAWCHEH-----GYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREAT 99 (159)
T ss_dssp HHHHHHHHHHT-----TSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHc-----CCcCHHHHHHHHHHHHHhCCccHHHHHHHHHHcCCCHHHH
Confidence 44666666543 9999999999999876432 46899999999999998764
No 19
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=78.54 E-value=8.4 Score=34.99 Aligned_cols=94 Identities=17% Similarity=0.154 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc--cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN--CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLF 173 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~--~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy 173 (378)
.-.+|++|... .|-||.||...|+..--. ---|..|-+-|..+||...+..= +.+.+ ....-+..|..+.
T Consensus 95 i~~vl~~L~~~-----g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I~~--al~~~-~~~~e~e~a~~l~ 166 (221)
T 3d5l_A 95 VEPILKKLRGQ-----QLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDD--ALTQF-TPEVQAELAKKLA 166 (221)
T ss_dssp HHHHHHHHHHT-----TCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHH--HGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCCHHHHHH--HHHhC-CHHHHHHHHHHHH
Confidence 44666666544 999999999999988643 35799999999999999876531 11111 0001123444454
Q ss_pred HHHHHc-cCCchHHHHHHHHHHHHH
Q 017043 174 SLGISR-NAQPTEKLKDAYKKFLVR 197 (378)
Q Consensus 174 ~~Gi~~-~A~P~~rL~~~~~~F~~R 197 (378)
++=... ...+....+++...|+.|
T Consensus 167 ~Kk~~~~~~~~~~~~k~K~~~~L~r 191 (221)
T 3d5l_A 167 LKLFRRYRNQPERRREQKVQQGLTT 191 (221)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCChHHHHHHHHHHHHh
Confidence 443332 223445566666666655
No 20
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=76.95 E-value=10 Score=33.18 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc--CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC--IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLF 173 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~--~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy 173 (378)
+-.+|++|... .|-||.||...|+..--.. --|..|-+-|..+||...+..=.. +.+ ....-+..|..+.
T Consensus 52 ie~vl~~L~~~-----g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al--~~~-~~~de~e~a~~l~ 123 (177)
T 3e3v_A 52 ISEIINKLIDL-----DLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDAL--ILY-TDKLQVEKGVTLA 123 (177)
T ss_dssp HHHHHHHHHHT-----TSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHH--TTS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHHHH--HhC-CchhHHHHHHHHH
Confidence 44566666543 9999999999999876443 589999999999999987653211 110 0011234455555
Q ss_pred HHHHHc-cCCchHHHHHHHHHHHHH
Q 017043 174 SLGISR-NAQPTEKLKDAYKKFLVR 197 (378)
Q Consensus 174 ~~Gi~~-~A~P~~rL~~~~~~F~~R 197 (378)
++=... ...|-....++...|+.|
T Consensus 124 ~Kk~~~~~~~~~~~~~~K~~~~L~r 148 (177)
T 3e3v_A 124 EKLANRYSHDSYRNKQNKIKQSLLT 148 (177)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCChHHHHHHHHHHHHH
Confidence 543322 223444555555566644
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=76.14 E-value=16 Score=31.07 Aligned_cols=80 Identities=13% Similarity=0.004 Sum_probs=55.1
Q ss_pred CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChH
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMK 167 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~ 167 (378)
..-..++++++....+ ...+|+.++.. ..++..+|.-+...+.....+..|...|..+...|+++
T Consensus 88 ~~A~~~~~~a~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 158 (252)
T 2ho1_A 88 KLADEEYRKALASDSR---------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA 158 (252)
T ss_dssp HHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCcC---------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHH
Confidence 3456677777765322 23455555542 33456677666664456677888888999999999999
Q ss_pred HHHHHHHHHHHccCC
Q 017043 168 AANDLFSLGISRNAQ 182 (378)
Q Consensus 168 ~A~~Iy~~Gi~~~A~ 182 (378)
+|..+|+..+.....
T Consensus 159 ~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 159 QAKEYFEKSLRLNRN 173 (252)
T ss_dssp HHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999999987644
No 22
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=75.80 E-value=3.1 Score=31.51 Aligned_cols=62 Identities=19% Similarity=0.130 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 116 DLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 116 D~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
||....+|..++.. ..++...|.-..... -..+..|...|..+...|++++|.+.|+.+|..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555666666643 234566666665543 334456777888999999999999999999975
No 23
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=74.51 E-value=10 Score=29.00 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAA 169 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A 169 (378)
-+..+++++... .+||....+|+..+.. ..++...|.-.....-. .+..|...+..+...|++++|
T Consensus 9 A~~~~~~al~~~------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 9 AVPYYEKAIASG------LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp CHHHHHHHHSSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHcC------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCHHHH
Confidence 356667776421 2378888888888864 24456777766654433 466777789999999999999
Q ss_pred HHHHHHHHHccCCc
Q 017043 170 NDLFSLGISRNAQP 183 (378)
Q Consensus 170 ~~Iy~~Gi~~~A~P 183 (378)
...|+.++...-..
T Consensus 81 ~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 81 VELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCCc
Confidence 99999999876544
No 24
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=73.46 E-value=44 Score=29.79 Aligned_cols=85 Identities=12% Similarity=-0.050 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHhcccccccchhh-HHHHHHHHhhc--cCCHHHHHHHHHH----C-CcchHHHHHHHHHHHHHHHccCh
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLR-YLNVWLEYAEN--CIDAQVIFSFLDA----N-DIGKTHSVYYIAYALHMESKSKM 166 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~R-yLkiWl~Ya~~--~~d~~~if~~L~~----~-~IG~~~AlfYe~~A~~lE~~~~~ 166 (378)
.-+..+++++.............. |..+=.-|... .+.+...|.-... . +.-...+..|-..+.++...|+|
T Consensus 133 ~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence 456677777774333221111111 22333333322 3345566655542 2 34456777889999999999999
Q ss_pred HHHHHHHHHHHHc
Q 017043 167 KAANDLFSLGISR 179 (378)
Q Consensus 167 ~~A~~Iy~~Gi~~ 179 (378)
++|.+.|+.+|.-
T Consensus 213 ~~A~~~~~~al~~ 225 (293)
T 3u3w_A 213 EESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999974
No 25
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=73.19 E-value=16 Score=26.62 Aligned_cols=76 Identities=7% Similarity=0.098 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKA 168 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~ 168 (378)
.-..++++++....+ + ..+|..++.. ..++..+|.-+.... ......|...|..+...|++.+
T Consensus 27 ~A~~~~~~~~~~~~~------~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 95 (125)
T 1na0_A 27 EAIEYYQKALELDPN------N---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDE 95 (125)
T ss_dssp HHHHHHHHHHHHCTT------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHCcC------c---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHH
Confidence 345666666654321 2 3345555432 234456666665543 3345567788899999999999
Q ss_pred HHHHHHHHHHccC
Q 017043 169 ANDLFSLGISRNA 181 (378)
Q Consensus 169 A~~Iy~~Gi~~~A 181 (378)
|..+|+..+....
T Consensus 96 A~~~~~~~~~~~~ 108 (125)
T 1na0_A 96 AIEYYQKALELDP 108 (125)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998754
No 26
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=72.70 E-value=25 Score=26.47 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHCCcch-HHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 130 CIDAQVIFSFLDANDIGK-THSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 130 ~~d~~~if~~L~~~~IG~-~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
..++...|.-+....-.. ..+..|...|..+...|++.+|...|+..+....
T Consensus 55 ~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 55 FQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 344566666655543332 1244455667788899999999999999998764
No 27
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=72.53 E-value=23 Score=30.47 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc-cCCHHHHHHHHHHCCcchHHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN-CIDAQVIFSFLDANDIGKTHSV 151 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~-~~d~~~if~~L~~~~IG~~~Al 151 (378)
+-.+|++|.. ..|-||.||...|+..--. ---|..|-+-|..+||...+..
T Consensus 51 Ie~vl~~l~~-----~g~ldD~rfA~~~v~~~~~~~~G~~~I~~eL~~KGI~~~~I~ 102 (162)
T 3dfg_A 51 AQAAVERLAG-----EGWQDDVRFAASVVRNRASSGYGPLHIRAELGTHGLDSDAVS 102 (162)
T ss_dssp HHHHHHHHHH-----TTSCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHccccHHHHHHHHHHcCCCHHHHH
Confidence 3455555543 3999999999999987533 3578999999999999987653
No 28
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=71.83 E-value=8.9 Score=33.46 Aligned_cols=84 Identities=12% Similarity=-0.021 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc------CCHHHHHHHHHHC------CcchHHHHHHHHHHHHHHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC------IDAQVIFSFLDAN------DIGKTHSVYYIAYALHMES 162 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~------~d~~~if~~L~~~------~IG~~~AlfYe~~A~~lE~ 162 (378)
.-..++++++..+.... =.+++....+|...+..+ .++.++|.-+... +-....+..|...|.++..
T Consensus 129 ~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 207 (311)
T 3nf1_A 129 EAEPLCKRALEIREKVL-GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK 207 (311)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 34566666665543220 033455666666666432 2345555544443 2245566777788888888
Q ss_pred ccChHHHHHHHHHHHHc
Q 017043 163 KSKMKAANDLFSLGISR 179 (378)
Q Consensus 163 ~~~~~~A~~Iy~~Gi~~ 179 (378)
.|++++|..+|+.++..
T Consensus 208 ~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 208 QGKFKQAETLYKEILTR 224 (311)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888888763
No 29
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.41 E-value=7.4 Score=29.99 Aligned_cols=62 Identities=11% Similarity=-0.085 Sum_probs=41.7
Q ss_pred HHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 119 YLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 119 yLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
...+|+.++.. ..++...|.-..... ...+..|...|..+...|++.+|...|+.++.....
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 34555555542 234455555544432 334666778888999999999999999999987543
No 30
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=70.79 E-value=21 Score=29.74 Aligned_cols=50 Identities=12% Similarity=-0.116 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.++...|...... ....+..|...|..+...|+|++|...|+.++.....
T Consensus 105 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 105 PKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 3445555554443 4445667778888999999999999999999987544
No 31
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=70.19 E-value=13 Score=26.79 Aligned_cols=52 Identities=10% Similarity=-0.089 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHc-cChHHHHHHHHHHHHccCC
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESK-SKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~-~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.++...|.-.....-....+..|...|..+... |++++|.+.|+.++.....
T Consensus 57 ~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 57 EEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 455666666665543322566777888888899 9999999999998876543
No 32
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=69.16 E-value=12 Score=32.00 Aligned_cols=88 Identities=10% Similarity=-0.050 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc------CCHHHHHHHHHHC------CcchHHHHHHHHHHH
Q 017043 91 GDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC------IDAQVIFSFLDAN------DIGKTHSVYYIAYAL 158 (378)
Q Consensus 91 ~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~------~d~~~if~~L~~~------~IG~~~AlfYe~~A~ 158 (378)
|.-..-..++++++..+.... -.+++....+|...+..+ ..+..+|.-.... .-....+..|...|.
T Consensus 99 g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 99 GKYKEAEPLCKRALEIREKVL-GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 333345677777776654321 123466777777766542 2345555544443 114566788888899
Q ss_pred HHHHccChHHHHHHHHHHHHc
Q 017043 159 HMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 159 ~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
++...|++++|..+|+.++..
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999888863
No 33
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=68.92 E-value=14 Score=27.19 Aligned_cols=75 Identities=8% Similarity=0.074 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc---cC---CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN---CI---DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKA 168 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~---~~---d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~ 168 (378)
.-..++++++.... ....+|..++.. .. ++..+|.-+.... ......|...|..+...|++.+
T Consensus 53 ~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 53 EAIEYYQKALELDP---------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp HHHHHHHHHHHHCT---------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHCC---------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHH
Confidence 34566666665422 223455555543 23 3455666555433 3334566678888889999999
Q ss_pred HHHHHHHHHHcc
Q 017043 169 ANDLFSLGISRN 180 (378)
Q Consensus 169 A~~Iy~~Gi~~~ 180 (378)
|...|+..+...
T Consensus 122 A~~~~~~~~~~~ 133 (136)
T 2fo7_A 122 AIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHccC
Confidence 999999888654
No 34
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=68.35 E-value=25 Score=26.72 Aligned_cols=85 Identities=7% Similarity=-0.120 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc---cCC---HHHHHHH----HHHCCcchHHHHHHHHHHHHHH
Q 017043 92 DSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN---CID---AQVIFSF----LDANDIGKTHSVYYIAYALHME 161 (378)
Q Consensus 92 ~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~---~~d---~~~if~~----L~~~~IG~~~AlfYe~~A~~lE 161 (378)
.-..-...+++++..+... .+......+|...+.. ..+ +...|.- ....+--...+..|...|..+.
T Consensus 64 ~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 64 EFETASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 3334567778887776543 3333445555555532 233 3333332 2233334566788888999999
Q ss_pred HccChHHHHHHHHHHHHc
Q 017043 162 SKSKMKAANDLFSLGISR 179 (378)
Q Consensus 162 ~~~~~~~A~~Iy~~Gi~~ 179 (378)
..|++++|.+.|+.+++-
T Consensus 141 ~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 999999999999998864
No 35
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=67.90 E-value=11 Score=33.44 Aligned_cols=80 Identities=11% Similarity=-0.053 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhh------ccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAE------NCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKA 168 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~------~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~ 168 (378)
.-+.++++++....++..+ ...+|+.++. ....+..+|.-.... ....+..|...|..+...|++++
T Consensus 252 ~A~~~~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 252 DATSKYESVMKTEPSVAEY-----TVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp HHHHHHHHHHHHCCSSHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCCCchHH-----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHH
Confidence 3556677777655442222 2233433332 234556777766654 34456788889999999999999
Q ss_pred HHHHHHHHHHccC
Q 017043 169 ANDLFSLGISRNA 181 (378)
Q Consensus 169 A~~Iy~~Gi~~~A 181 (378)
|...|+.+++..-
T Consensus 325 A~~~~~~a~~~~p 337 (359)
T 3ieg_A 325 AIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHTTCT
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998753
No 36
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=67.78 E-value=27 Score=32.44 Aligned_cols=81 Identities=11% Similarity=0.144 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc---cCC---HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN---CID---AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKA 168 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~---~~d---~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~ 168 (378)
.-...+++++..+... +|+.|...+...... ..+ ..+.+.++...+.-...+.+|...|.++...|++++
T Consensus 279 ~A~~~~~~al~~~~~~----~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 354 (378)
T 3q15_A 279 KAFQFIEEGLDHITAR----SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQ 354 (378)
T ss_dssp HHHHHHHHHHHHCCTT----CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHH
Confidence 3456666776665442 233443333222222 233 567777888877778888999999999999999999
Q ss_pred HHHHHHHHHHc
Q 017043 169 ANDLFSLGISR 179 (378)
Q Consensus 169 A~~Iy~~Gi~~ 179 (378)
|...|++.+.-
T Consensus 355 A~~~~~~al~~ 365 (378)
T 3q15_A 355 AAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 37
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=67.43 E-value=22 Score=27.09 Aligned_cols=32 Identities=6% Similarity=-0.080 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
..+..|...|..+...|++++|...|+.++..
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34677888899999999999999999999864
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=67.24 E-value=9 Score=33.03 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 116 DLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 116 D~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
||.+..+|+..+.. .+++...|.-..... ..+..|...|..+...|++++|...|+..++..-
T Consensus 114 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182 (217)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44555566655543 345577777766655 4566777889999999999999999999998643
No 39
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=66.60 E-value=14 Score=31.26 Aligned_cols=76 Identities=7% Similarity=0.148 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcch-----HHHHHHHHHHHHHHHcc
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGK-----THSVYYIAYALHMESKS 164 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~-----~~AlfYe~~A~~lE~~~ 164 (378)
-+..+++++. .+|....+|+.++.. ...+...|.-.....-.. .++..|...+..+...|
T Consensus 61 A~~~~~~al~---------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 131 (228)
T 4i17_A 61 AADYFDIAIK---------KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG 131 (228)
T ss_dssp HHHHHHHHHH---------TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH---------hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc
Confidence 4555666653 345566677776653 234566776665543332 35577899999999999
Q ss_pred ChHHHHHHHHHHHHcc
Q 017043 165 KMKAANDLFSLGISRN 180 (378)
Q Consensus 165 ~~~~A~~Iy~~Gi~~~ 180 (378)
++++|.+.|+..|...
T Consensus 132 ~~~~A~~~~~~al~~~ 147 (228)
T 4i17_A 132 NIEKAEENYKHATDVT 147 (228)
T ss_dssp CHHHHHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHhcC
Confidence 9999999999999874
No 40
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=66.52 E-value=31 Score=25.80 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
.++...|...... ....+..|...|..+...|++.+|...|+.++...
T Consensus 36 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 36 DAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3456666665543 34556677888999999999999999999999854
No 41
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=66.41 E-value=35 Score=25.31 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 132 DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 132 d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
++..+|.-... +....+..|...|..+...|++.+|...|+.++...-
T Consensus 68 ~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 68 LALKDCEECIQ--LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHH--hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 34455554444 3444567788889999999999999999999998653
No 42
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=65.66 E-value=27 Score=26.92 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHc-----cCCc----hHHHHHHHHHHHHHHhh
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGISR-----NAQP----TEKLKDAYKKFLVRSMR 200 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~-----~A~P----~~rL~~~~~~F~~R~~~ 200 (378)
.-|.-+..=|.-++..|+|.+|...|+.||+- +.+| .+.|..+..++..|...
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~ 78 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEV 78 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44666777788899999999999999999983 1122 44577888888877653
No 43
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=65.64 E-value=18 Score=28.57 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
.++...|.-... |....+..|...|..+...|+|++|.+.|+.+|+-.
T Consensus 64 ~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 64 QRALDDCDTCIR--LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 344555554443 455567778889999999999999999999999864
No 44
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=65.56 E-value=14 Score=32.14 Aligned_cols=85 Identities=8% Similarity=-0.067 Sum_probs=57.4
Q ss_pred CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc---C---CHHHHHHHHHHC------CcchHHHHHHHHHHHHHH
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC---I---DAQVIFSFLDAN------DIGKTHSVYYIAYALHME 161 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~---~---d~~~if~~L~~~------~IG~~~AlfYe~~A~~lE 161 (378)
..-..++++++..+..... .+++....+|...+..+ . ++...|.-.... +--...+..|...|.++.
T Consensus 86 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 164 (311)
T 3nf1_A 86 KDAANLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 3456777777766543211 34566677777766542 3 345555544432 223567788889999999
Q ss_pred HccChHHHHHHHHHHHHc
Q 017043 162 SKSKMKAANDLFSLGISR 179 (378)
Q Consensus 162 ~~~~~~~A~~Iy~~Gi~~ 179 (378)
..|++.+|.++|+..+..
T Consensus 165 ~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp TTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999999986
No 45
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=65.14 E-value=24 Score=25.88 Aligned_cols=51 Identities=6% Similarity=0.017 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
.++..+|.-+.... ......|...+..+...|++.+|..+|+.++......
T Consensus 52 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 52 DEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102 (136)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHC--CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 34456666555433 3345566778899999999999999999999876443
No 46
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=64.97 E-value=14 Score=29.20 Aligned_cols=78 Identities=8% Similarity=0.007 Sum_probs=51.7
Q ss_pred CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChH
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMK 167 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~ 167 (378)
..-..++++++.... ....+|+.++.. ...+.++|.-+... ....+..|...|..+...|++.
T Consensus 59 ~~A~~~~~~~~~~~~---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 59 DRGTELLERSLADAP---------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp HHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHH
Confidence 345677777776532 223455555543 23445666655543 3344667788888999999999
Q ss_pred HHHHHHHHHHHccCC
Q 017043 168 AANDLFSLGISRNAQ 182 (378)
Q Consensus 168 ~A~~Iy~~Gi~~~A~ 182 (378)
+|..+|+..+.....
T Consensus 128 ~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 128 EAIDSFKIALGLRPN 142 (186)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999999987643
No 47
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=64.61 E-value=19 Score=29.87 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=39.1
Q ss_pred chhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 115 DDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 115 nD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
-||.....|...+.. ..++..+|..+... --..+.+|...+..+...|+|.+|...|+..|...
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 356666666655532 23455666655543 23445566666777777777777777777777654
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=63.99 E-value=30 Score=28.32 Aligned_cols=47 Identities=15% Similarity=-0.005 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 133 AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 133 ~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
+...|.-+... .......|...|..+...|++.+|..+|+..+...-
T Consensus 132 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 132 AEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444432 223345556666666677777777777777766543
No 49
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=63.98 E-value=39 Score=30.70 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=45.5
Q ss_pred hHHHHHHHHh---hccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchH
Q 017043 118 RYLNVWLEYA---ENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTE 185 (378)
Q Consensus 118 RyLkiWl~Ya---~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 185 (378)
++...|+... +...++..+|.-+.... ...+..|..-|..+...|++++|.++|+..+...-.-.+
T Consensus 167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 167 QLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3344566554 34566778888777652 334667777888888889999999999988886654333
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=62.90 E-value=49 Score=27.92 Aligned_cols=67 Identities=10% Similarity=-0.035 Sum_probs=46.7
Q ss_pred chhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 115 DDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 115 nD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
.++....+|..++.. ...+..+|.-+.... ...+..|...|..+...|++++|..+|+..+...-..
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 345555666666643 234466666655433 3346778889999999999999999999999865443
No 51
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=62.76 E-value=34 Score=26.28 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHc-----cCCc----hHHHHHHHHHHHHHHhhccc
Q 017043 149 HSVYYIAYALHMESKSKMKAANDLFSLGISR-----NAQP----TEKLKDAYKKFLVRSMRKTQ 203 (378)
Q Consensus 149 ~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~-----~A~P----~~rL~~~~~~F~~R~~~~~~ 203 (378)
-|.-+..=|.-++..|+|.+|...|..||+- +.+| .+.+..+..++..|...-..
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~ 73 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEK 73 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777788899999999999999999983 2222 45588888888888766543
No 52
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=62.58 E-value=40 Score=24.17 Aligned_cols=49 Identities=14% Similarity=0.013 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 132 DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 132 d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.+...|.-.... ....+..|...|..+...|++.+|..+|+.++.....
T Consensus 56 ~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 56 KAYEDGCKTVDL--KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 345555554443 3345667788899999999999999999999987644
No 53
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=60.36 E-value=41 Score=28.08 Aligned_cols=87 Identities=8% Similarity=-0.032 Sum_probs=56.5
Q ss_pred CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCC-----------------------
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDAND----------------------- 144 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~----------------------- 144 (378)
..-+..+++++....+.. .+.+....+|...+.. ..++...|.-.....
T Consensus 55 ~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 55 ETAISTLNDAVEQGREMR--ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp HHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccc--cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH
Confidence 345667777776654432 1222335566555543 233455555554421
Q ss_pred -cchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 145 -IGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 145 -IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
+....+..|...|..+...|++.+|...|+..+.....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 171 (258)
T 3uq3_A 133 YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171 (258)
T ss_dssp HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc
Confidence 55667888889999999999999999999999986543
No 54
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=60.36 E-value=17 Score=29.98 Aligned_cols=54 Identities=9% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHc-----cC---Cc--hHHHHHHHHHHHHHHhhc
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGISR-----NA---QP--TEKLKDAYKKFLVRSMRK 201 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~-----~A---~P--~~rL~~~~~~F~~R~~~~ 201 (378)
.-|.++..=|.-++..|+|.+|...|..||+- +- .| .+.|..+..+++.|...-
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~L 79 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKL 79 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888889999999999999999999882 11 22 356778888888876654
No 55
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=59.28 E-value=27 Score=26.67 Aligned_cols=53 Identities=11% Similarity=0.333 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHc-----cCCc----hHHHHHHHHHHHHHHhh
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGISR-----NAQP----TEKLKDAYKKFLVRSMR 200 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~-----~A~P----~~rL~~~~~~F~~R~~~ 200 (378)
.-|.++..=|.-++..|+|.+|...|..||+- +..| .+.|..+..+++.|...
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~ 72 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQ 72 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888999999999999999999983 2233 24467777777777544
No 56
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=59.08 E-value=48 Score=31.61 Aligned_cols=84 Identities=11% Similarity=-0.120 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhccc-------ccccchhhHHHHHHHHhhcc------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHH
Q 017043 96 LVVIYEQCVRRFWHS-------QCYKDDLRYLNVWLEYAENC------IDAQVIFSFLDANDIGKTHSVYYIAYALHMES 162 (378)
Q Consensus 96 L~~lLErc~~~f~~~-------e~YknD~RyLkiWl~Ya~~~------~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~ 162 (378)
-+..+++++..+... +....++....+|..++.++ .++.+.|...... ....+..|-..|..+..
T Consensus 242 Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 319 (370)
T 1ihg_A 242 AIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQG 319 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHH
Confidence 455566666543321 12236777788888887642 3456666666654 44556677788888999
Q ss_pred ccChHHHHHHHHHHHHccC
Q 017043 163 KSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 163 ~~~~~~A~~Iy~~Gi~~~A 181 (378)
.|+|++|...|+.+++...
T Consensus 320 ~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 320 LKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred ccCHHHHHHHHHHHHHhCC
Confidence 9999999999999998754
No 57
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=58.97 E-value=37 Score=26.32 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHccChHHHHHHHHHHHHc-----cC--Cc--hHHHHHHHHHHHHHHh
Q 017043 147 KTHSVYYIAYALHMESKSKMKAANDLFSLGISR-----NA--QP--TEKLKDAYKKFLVRSM 199 (378)
Q Consensus 147 ~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~-----~A--~P--~~rL~~~~~~F~~R~~ 199 (378)
..-|..+..=|.-++..|+|.+|...|..||+- +. .| .+.|.++..+.+.|..
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE 74 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAE 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 345788888899999999999999999999973 22 33 2346666666666644
No 58
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=58.94 E-value=19 Score=28.41 Aligned_cols=26 Identities=12% Similarity=-0.081 Sum_probs=12.5
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHH
Q 017043 153 YIAYALHMESKSKMKAANDLFSLGIS 178 (378)
Q Consensus 153 Ye~~A~~lE~~~~~~~A~~Iy~~Gi~ 178 (378)
|...+..+...|++.+|...|+..+.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444445555555555555444
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=58.62 E-value=23 Score=30.32 Aligned_cols=31 Identities=10% Similarity=-0.035 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
+..|...|..+...|++.+|..+|+.++...
T Consensus 111 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 111 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3445555555666666666666666666543
No 60
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=57.43 E-value=33 Score=28.31 Aligned_cols=80 Identities=10% Similarity=-0.028 Sum_probs=54.7
Q ss_pred CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCC--------------cchHHHHHH
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDAND--------------IGKTHSVYY 153 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~--------------IG~~~AlfY 153 (378)
..-+..+++++... +.+..+|+.++.. ..++...|.-..... +....+..|
T Consensus 54 ~~A~~~~~~al~~~---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T 1hh8_A 54 TEAEKAFTRSINRD---------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124 (213)
T ss_dssp HHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHH
T ss_pred HHHHHHHHHHHHhC---------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHH
Confidence 34566777777653 3334555555543 345667777666643 333456778
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 154 IAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 154 e~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
...|..+...|++.+|.+.|+..+.....
T Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 125 YNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 88889999999999999999999987654
No 61
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=57.38 E-value=53 Score=23.97 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRNAQPTEKLKDAYKKFL 195 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~rL~~~~~~F~ 195 (378)
+..|...|..+...|++.+|.+.|+.++...-. ...........
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~ 122 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 667788899999999999999999999997543 33344433333
No 62
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=56.65 E-value=24 Score=27.59 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
..+..|...|..+...|++.+|..+|+.++...-.
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 34556677778888888888888888888876543
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=56.55 E-value=52 Score=25.63 Aligned_cols=75 Identities=13% Similarity=-0.016 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKA 168 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~ 168 (378)
.-..++++++....+ + ..+|+.++.. ...+..+|.-+.... ......|...|..+...|++.+
T Consensus 94 ~A~~~~~~~~~~~~~------~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 94 LAVPLLIKVAEANPI------N---FNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHHHHHHHHCTT------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCcH------h---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHH
Confidence 456777777766433 2 2344444432 334566666655543 3446778889999999999999
Q ss_pred HHHHHHHHHHcc
Q 017043 169 ANDLFSLGISRN 180 (378)
Q Consensus 169 A~~Iy~~Gi~~~ 180 (378)
|..+|+..++..
T Consensus 163 A~~~~~~~~~~~ 174 (186)
T 3as5_A 163 ALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 999999988643
No 64
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=56.40 E-value=30 Score=26.24 Aligned_cols=74 Identities=8% Similarity=-0.161 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAA 169 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A 169 (378)
-+..+++++....+ ...+|..++.+ ...+...|.-... +....+..|...|..+...|++.+|
T Consensus 28 A~~~~~~al~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A 96 (137)
T 3q49_B 28 AAACYGRAITRNPL---------VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYDEA 96 (137)
T ss_dssp HHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhhCcC---------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHHhhHHHH
Confidence 44555666654322 23445554432 2344556655554 3455677788889999999999999
Q ss_pred HHHHHHHHHcc
Q 017043 170 NDLFSLGISRN 180 (378)
Q Consensus 170 ~~Iy~~Gi~~~ 180 (378)
...|+.++...
T Consensus 97 ~~~~~~a~~~~ 107 (137)
T 3q49_B 97 IANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHC
Confidence 99999998754
No 65
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=56.37 E-value=23 Score=29.61 Aligned_cols=77 Identities=9% Similarity=0.062 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKA 168 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~ 168 (378)
.-+.++++++.... ....+|..++.. ...+..+|.-+... .......|...|..+...|++++
T Consensus 75 ~A~~~~~~~~~~~~---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 75 RALAFYDKALELDS---------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCC---------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHH
Confidence 34566666665522 223444444432 23445566555443 33345667778888889999999
Q ss_pred HHHHHHHHHHccCC
Q 017043 169 ANDLFSLGISRNAQ 182 (378)
Q Consensus 169 A~~Iy~~Gi~~~A~ 182 (378)
|..+|+..+...-.
T Consensus 144 A~~~~~~~~~~~~~ 157 (243)
T 2q7f_A 144 ALPYLQRAVELNEN 157 (243)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999886543
No 66
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=55.38 E-value=49 Score=26.58 Aligned_cols=79 Identities=13% Similarity=0.078 Sum_probs=51.7
Q ss_pred CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc-------c--CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcc
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN-------C--IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKS 164 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~-------~--~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~ 164 (378)
..-+..+++++....++ ..+|..++.. . .++..+|.-+....- .....|...|.++...|
T Consensus 61 ~~A~~~~~~al~~~p~~---------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g 129 (177)
T 2e2e_A 61 SNSLLAYRQALQLRGEN---------AELYAALATVLYYQASQHMTAQTRAMIDKALALDS--NEITALMLLASDAFMQA 129 (177)
T ss_dssp HHHHHHHHHHHHHHCSC---------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcc
Confidence 34566777777654332 2344444432 2 445667766665443 34566777889999999
Q ss_pred ChHHHHHHHHHHHHccCCc
Q 017043 165 KMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 165 ~~~~A~~Iy~~Gi~~~A~P 183 (378)
++.+|...|+..+...-..
T Consensus 130 ~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 130 NYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp CHHHHHHHHHHHHHTCCTT
T ss_pred cHHHHHHHHHHHHhhCCCC
Confidence 9999999999999876543
No 67
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=54.79 E-value=45 Score=25.21 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
..+...|.-... +....+..|...|..+...|++.+|...|+.++...
T Consensus 55 ~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 55 PEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 344555555444 344456778888999999999999999999999876
No 68
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=54.26 E-value=48 Score=25.72 Aligned_cols=46 Identities=4% Similarity=-0.196 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLG 176 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~G 176 (378)
.++..+|.-.....-....+.++...+..+...|++++|.++|...
T Consensus 98 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 98 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 3445666665555545555555566666666777777777777653
No 69
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=53.73 E-value=50 Score=23.70 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHCCcchHHHH-HHHHHHHHHHHccChHHHHHHHHHHHHccCCch
Q 017043 131 IDAQVIFSFLDANDIGKTHSV-YYIAYALHMESKSKMKAANDLFSLGISRNAQPT 184 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~Al-fYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 184 (378)
.++...|.-+.... ...+. .|...|..+...|++.+|.+.|+.++.....-.
T Consensus 17 ~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 17 ENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 34455555544432 23344 667778888899999999999999999765443
No 70
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=52.66 E-value=57 Score=29.42 Aligned_cols=84 Identities=8% Similarity=-0.054 Sum_probs=51.1
Q ss_pred CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc--CCH---HHHHHHHHH--CCcc--hHHHHHHHHHHHHHHHcc
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC--IDA---QVIFSFLDA--NDIG--KTHSVYYIAYALHMESKS 164 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~--~d~---~~if~~L~~--~~IG--~~~AlfYe~~A~~lE~~~ 164 (378)
..-+..+++++..+..... ......+|...+..+ .+. ...|.-... ...| ...+..|...+.++...|
T Consensus 93 ~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 93 PEAVQYIEKASVMYVENGT---PDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169 (307)
T ss_dssp GGGHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence 3457778888877654322 223344554444332 333 333332111 1122 345778888999999999
Q ss_pred ChHHHHHHHHHHHHcc
Q 017043 165 KMKAANDLFSLGISRN 180 (378)
Q Consensus 165 ~~~~A~~Iy~~Gi~~~ 180 (378)
+|.+|...|+..+...
T Consensus 170 ~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMY 185 (307)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 71
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=52.39 E-value=58 Score=30.55 Aligned_cols=124 Identities=10% Similarity=0.102 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc---
Q 017043 53 LLDNRRRLIEAIDKYEGDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN--- 129 (378)
Q Consensus 53 l~~~~~~~~~~i~~~~gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~--- 129 (378)
+...++++...|+.. .+....-.+..+-++... . |....-+..+++++..+.....-..|++.+-.|-.++..
T Consensus 31 l~~~e~~~~~~~~~~-~~~~~a~~yn~Lg~~~~~--~-G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~ 106 (472)
T 4g1t_A 31 LDDFEDKVFYRTEFQ-NREFKATMCNLLAYLKHL--K-GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH 106 (472)
T ss_dssp HHHHHHHHHHHTTSC-C---CCHHHHHHHHHHHH--T-TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH--C-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence 333444555555543 223333333444444332 2 232345778888888777766666788888887766642
Q ss_pred ---cCCHHHHHHHHHH--------CCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 130 ---CIDAQVIFSFLDA--------NDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 130 ---~~d~~~if~~L~~--------~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
..++...|.-... .++-...+.....|+.+....++|++|.+.|+..+.-.
T Consensus 107 ~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred cCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence 2333444432221 12223334455677777777789999999999999865
No 72
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=51.95 E-value=54 Score=25.62 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHc-----cCCc--h--HHHHHHHHHHHHHHhh
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGISR-----NAQP--T--EKLKDAYKKFLVRSMR 200 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~-----~A~P--~--~rL~~~~~~F~~R~~~ 200 (378)
.-|.-+..=|.-++..|+|.+|...|..||+- +.+| . +.|..+..+++.|...
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~ 74 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN 74 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888999999999999999999873 2233 2 3466677777777554
No 73
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=51.55 E-value=13 Score=32.72 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
+..|...|..+...|++.+|.+.|+..++.
T Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 270 ASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 334444444555555555555555554443
No 74
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=51.21 E-value=1e+02 Score=25.48 Aligned_cols=66 Identities=8% Similarity=-0.060 Sum_probs=48.2
Q ss_pred chhhHHHHHHHHhhcc------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 115 DDLRYLNVWLEYAENC------IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 115 nD~RyLkiWl~Ya~~~------~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.++....+|..++..+ ..+...|.-.... ....+..|...|..+...|++.+|...|+.++.....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 4566777777777542 3445666655543 3445678888999999999999999999999987644
No 75
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=51.07 E-value=18 Score=28.20 Aligned_cols=75 Identities=9% Similarity=0.035 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKA 168 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~ 168 (378)
.-+..+++++.. ||.....|...+.. ..++...|.-.... .-..+..|...|..+...|++.+
T Consensus 35 ~A~~~~~~al~~---------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 35 EAALAFEAVCQK---------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHHHHHHHHH---------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 345566666654 33345566555543 23345555544443 33445567778888888999999
Q ss_pred HHHHHHHHHHcc
Q 017043 169 ANDLFSLGISRN 180 (378)
Q Consensus 169 A~~Iy~~Gi~~~ 180 (378)
|...|+..|+..
T Consensus 104 A~~~~~~al~~~ 115 (121)
T 1hxi_A 104 ALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHhC
Confidence 999999888653
No 76
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=50.72 E-value=1.3e+02 Score=26.52 Aligned_cols=85 Identities=7% Similarity=-0.040 Sum_probs=58.9
Q ss_pred CCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhcc---C---CHHHHHHH----HHHCCcchHHHHHHHHHHHHHH
Q 017043 92 DSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAENC---I---DAQVIFSF----LDANDIGKTHSVYYIAYALHME 161 (378)
Q Consensus 92 ~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~~---~---d~~~if~~----L~~~~IG~~~AlfYe~~A~~lE 161 (378)
.-..-+..+++++..+.... .+++....++..++..+ . .+.+.|.- ....+--..++.+|..-+..+.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 33345677888887766542 36777788888877542 3 33333332 2344445567899999999999
Q ss_pred Hcc-ChHHHHHHHHHHHH
Q 017043 162 SKS-KMKAANDLFSLGIS 178 (378)
Q Consensus 162 ~~~-~~~~A~~Iy~~Gi~ 178 (378)
..| .+++|.+.|+.++.
T Consensus 248 ~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 248 KLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HTTCCHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHH
Confidence 999 57999999999885
No 77
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=50.63 E-value=31 Score=27.88 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=11.7
Q ss_pred HHHHHHHHccChHHHHHHHHHHHH
Q 017043 155 AYALHMESKSKMKAANDLFSLGIS 178 (378)
Q Consensus 155 ~~A~~lE~~~~~~~A~~Iy~~Gi~ 178 (378)
..+..+...|++.+|...|+..|.
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444445555555555555544
No 78
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=50.57 E-value=93 Score=24.70 Aligned_cols=95 Identities=12% Similarity=0.025 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAA 169 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A 169 (378)
-+.++++++...-+ ...+|+.++.+ ..++...|.-.... ....+..|...+..+...|++++|
T Consensus 30 A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A 98 (164)
T 3sz7_A 30 AIDLYTQALSIAPA---------NPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLARFDMADYKGA 98 (164)
T ss_dssp HHHHHHHHHHHSTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCc---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHH
Confidence 45556666654322 23344444432 34455666655543 344577788889999999999999
Q ss_pred HHHHHHHHHccCC-chHHHHHHHHHHHHHHhhc
Q 017043 170 NDLFSLGISRNAQ-PTEKLKDAYKKFLVRSMRK 201 (378)
Q Consensus 170 ~~Iy~~Gi~~~A~-P~~rL~~~~~~F~~R~~~~ 201 (378)
...|+..+...-. +...+...+.....++...
T Consensus 99 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 131 (164)
T 3sz7_A 99 KEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131 (164)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999986543 3334555555555554443
No 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=50.15 E-value=1.1e+02 Score=28.01 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 133 AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 133 ~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
......++...+.-...+..|...|.++...|++++|.+.|+..+.-
T Consensus 322 ~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 322 IQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45666666777777778888999999999999999999999988763
No 80
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=49.00 E-value=52 Score=26.79 Aligned_cols=49 Identities=10% Similarity=-0.077 Sum_probs=37.3
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 133 AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 133 ~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
....|.-.... .-..+..|...|..+...|++++|...|+..+...-.+
T Consensus 93 a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 93 ELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 35666655543 33446677788999999999999999999999887544
No 81
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=48.89 E-value=30 Score=28.67 Aligned_cols=86 Identities=14% Similarity=0.023 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKA 168 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~ 168 (378)
.-+.++++++.. ||....+|...+.. ..++.+.|.-.....=. .+..|-..+..+...|++.+
T Consensus 54 eA~~~~~~al~~---------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~~~~~~lg~~~~~lg~~~e 122 (151)
T 3gyz_A 54 EAEVFFRFLCIY---------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DYTPVFHTGQCQLRLKAPLK 122 (151)
T ss_dssp HHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHH
Confidence 345666666654 44555667766643 34567777776664444 44556677888999999999
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHH
Q 017043 169 ANDLFSLGISRNAQPTEKLKDAYKK 193 (378)
Q Consensus 169 A~~Iy~~Gi~~~A~P~~rL~~~~~~ 193 (378)
|...|+..|...-.+ .+.++-+.
T Consensus 123 A~~~~~~al~l~~~~--~~~~~A~~ 145 (151)
T 3gyz_A 123 AKECFELVIQHSNDE--KLKIKAQS 145 (151)
T ss_dssp HHHHHHHHHHHCCCH--HHHHHHHH
T ss_pred HHHHHHHHHHhCCCH--HHHHHHHH
Confidence 999999999986443 34444443
No 82
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=48.78 E-value=53 Score=29.81 Aligned_cols=26 Identities=4% Similarity=-0.084 Sum_probs=12.4
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 154 IAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 154 e~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
..-+.++...|++++|.+.|+..+..
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 33344444455555555555544443
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=48.73 E-value=58 Score=28.11 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHH---------hhccCCHHHHHHHHHHCCcchHH---------------H
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEY---------AENCIDAQVIFSFLDANDIGKTH---------------S 150 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Y---------a~~~~d~~~if~~L~~~~IG~~~---------------A 150 (378)
.-+..+++++..+-+++. ..+..|..-.+.+ .....++...|.-+....=.... +
T Consensus 70 ~A~~~~~~~l~~~p~~~~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~ 148 (261)
T 3qky_A 70 LAASEYERFIQIYQIDPR-VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLA 148 (261)
T ss_dssp HHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCch-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHH
Confidence 356677777766554432 2233333333332 23344556666655543322211 1
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 151 VYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 151 lfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.-+...|.++...|+|.+|...|+..|.....
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 12245678889999999999999999987554
No 84
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=48.63 E-value=36 Score=25.75 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 130 CIDAQVIFSFLDANDIG-KTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 130 ~~d~~~if~~L~~~~IG-~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
...+...|.-....+.. ...+..|...+..+...|+|.+|...|+.+|...-.-
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 34556666666653321 5677888999999999999999999999999976543
No 85
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=45.59 E-value=84 Score=22.75 Aligned_cols=46 Identities=15% Similarity=-0.015 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 133 AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 133 ~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
+..+|.-.... ....+..|...|..+...|++.+|...|+.++...
T Consensus 65 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 65 AVQDCERAICI--DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhc--CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 34555544443 23335556666667777777777777777777654
No 86
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=45.38 E-value=39 Score=30.28 Aligned_cols=77 Identities=9% Similarity=-0.033 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAA 169 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A 169 (378)
-+.++++++....+.. ...+|...+.. ..++..+|.-+... ....+..|...+..+...|++.+|
T Consensus 200 A~~~~~~a~~~~p~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 200 VKELFLAAVRLDPTSI-------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHSTTSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCcCcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 4667777766533211 22344333332 33455666655543 344466777888888889999999
Q ss_pred HHHHHHHHHccC
Q 017043 170 NDLFSLGISRNA 181 (378)
Q Consensus 170 ~~Iy~~Gi~~~A 181 (378)
..+|+..+...-
T Consensus 271 ~~~~~~al~~~~ 282 (368)
T 1fch_A 271 VAAYRRALELQP 282 (368)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 999999888643
No 87
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=44.25 E-value=43 Score=30.27 Aligned_cols=74 Identities=12% Similarity=0.009 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKA 168 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~ 168 (378)
.-+.++++++... |....+|..++.. ...+..+|.-.... ....+..|...+..+...|++.+
T Consensus 83 ~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 83 VTILFMEAAILQD---------PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhC---------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHccccHHH
Confidence 4567777777653 2334556665543 34456777766553 34456778888999999999999
Q ss_pred HHHHHHHHHHc
Q 017043 169 ANDLFSLGISR 179 (378)
Q Consensus 169 A~~Iy~~Gi~~ 179 (378)
|..+|+..+..
T Consensus 152 A~~~~~~al~~ 162 (365)
T 4eqf_A 152 ACEALKNWIKQ 162 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 88
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=44.14 E-value=79 Score=27.15 Aligned_cols=83 Identities=7% Similarity=-0.151 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc---cCCH---HHHHHHHHH----CCcchHHHHHHHHHHHHHHHcc
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN---CIDA---QVIFSFLDA----NDIGKTHSVYYIAYALHMESKS 164 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~---~~d~---~~if~~L~~----~~IG~~~AlfYe~~A~~lE~~~ 164 (378)
.-..++++++..+... .+......+|...+.. ..+. ...|.-... .+-....+..|...|.++...|
T Consensus 241 ~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 241 TASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 3566777777666543 3344445555555543 2343 344432221 2333455778889999999999
Q ss_pred ChHHHHHHHHHHHHcc
Q 017043 165 KMKAANDLFSLGISRN 180 (378)
Q Consensus 165 ~~~~A~~Iy~~Gi~~~ 180 (378)
++++|...|+..+...
T Consensus 318 ~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 318 NHDQAMHFAEKHLEIS 333 (338)
T ss_dssp CHHHHHHHHHHHHHC-
T ss_pred ChHHHHHHHHHHHHHH
Confidence 9999999999998754
No 89
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=44.14 E-value=1.4e+02 Score=25.03 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
+..|...|..+...|++++|...|+.++....
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 67888899999999999999999999998763
No 90
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=44.06 E-value=1.1e+02 Score=26.01 Aligned_cols=45 Identities=13% Similarity=-0.026 Sum_probs=24.1
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 133 AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 133 ~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
+...|.-... +....+..|...|..+...|++.+|...|+..+..
T Consensus 93 A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 93 AIQQYQAAVD--RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHh--cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 3444444443 22233445555666666666666666666666655
No 91
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=44.02 E-value=1e+02 Score=23.95 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.++...|..+... .-..+.+|...+..+...|+|++|...|+.+|.....
T Consensus 35 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 35 DDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3445555544432 3334566777788889999999999999999987543
No 92
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=44.01 E-value=49 Score=26.61 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 132 DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 132 d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
++...|.-+... ....+.+|...+..+...|+|++|...|+..+...-
T Consensus 39 ~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 39 DAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344455444432 223355566678888899999999999999998653
No 93
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=43.96 E-value=41 Score=31.23 Aligned_cols=78 Identities=10% Similarity=-0.063 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcccccccchhhH-HHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRY-LNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKA 168 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~Ry-LkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~ 168 (378)
-+.++++++....+ ++.+ ..+|...+.. ..++..+|.-+... ....+..|...+..+...|++++
T Consensus 276 A~~~~~~~l~~~p~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~ 347 (450)
T 2y4t_A 276 ATSKYESVMKTEPS------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDE 347 (450)
T ss_dssp HHHHHHHHHHHCCS------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcCCc------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHH
Confidence 34556666654322 3322 3445444433 23445666655443 34456778888999999999999
Q ss_pred HHHHHHHHHHccC
Q 017043 169 ANDLFSLGISRNA 181 (378)
Q Consensus 169 A~~Iy~~Gi~~~A 181 (378)
|...|+..++...
T Consensus 348 A~~~~~~al~~~p 360 (450)
T 2y4t_A 348 AIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCc
Confidence 9999999998543
No 94
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=43.68 E-value=1.2e+02 Score=24.19 Aligned_cols=83 Identities=8% Similarity=-0.095 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHHhcccccccchh-hHHHHHHHHhhc---cCC---HHHHHHHHH----HCCcchHHHHHHHHHHHHHHH
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDL-RYLNVWLEYAEN---CID---AQVIFSFLD----ANDIGKTHSVYYIAYALHMES 162 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~-RyLkiWl~Ya~~---~~d---~~~if~~L~----~~~IG~~~AlfYe~~A~~lE~ 162 (378)
..-...+++++..+.. ..+++ ....++...+.. ..+ +...|.-.. ..+--...+..|...+..+..
T Consensus 83 ~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 83 DAARRCFLEERELLAS---LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp HHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 3456777888877653 33333 334444443332 233 344443322 233334556778888999999
Q ss_pred ccChHHHHHHHHHHHHc
Q 017043 163 KSKMKAANDLFSLGISR 179 (378)
Q Consensus 163 ~~~~~~A~~Iy~~Gi~~ 179 (378)
.|++.+|...|+.++.-
T Consensus 160 ~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999988864
No 95
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=43.53 E-value=89 Score=25.00 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=25.8
Q ss_pred cchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 145 IGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 145 IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
+.......|...+..+...|+|++|.+.|+..++..
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 102 LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 334445566667778888888888888888888754
No 96
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=42.32 E-value=58 Score=25.34 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 149 HSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 149 ~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
+|.-|...+..++..|+|++|.+.|+.++...-.|
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 35566777888999999999999999999865444
No 97
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=42.18 E-value=1.5e+02 Score=28.09 Aligned_cols=92 Identities=15% Similarity=-0.012 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHhcccccccchhh--HHHHHHHHh-----------hccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLR--YLNVWLEYA-----------ENCIDAQVIFSFLDANDIGKTHSVYYIAYALHME 161 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~R--yLkiWl~Ya-----------~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE 161 (378)
.-...+++++....+........- +.+.++.+. .....+...|.-..... ...+..|...|.++.
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 345667777776655554444332 222222222 34556677777666543 344567888899999
Q ss_pred HccChHHHHHHHHHHHHccCCchHHHH
Q 017043 162 SKSKMKAANDLFSLGISRNAQPTEKLK 188 (378)
Q Consensus 162 ~~~~~~~A~~Iy~~Gi~~~A~P~~rL~ 188 (378)
..|++.+|.+.|+..++..-...+.+.
T Consensus 474 ~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 474 QMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999998766655544
No 98
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=42.06 E-value=73 Score=27.40 Aligned_cols=82 Identities=7% Similarity=-0.087 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc---cCCH---HHHHHHHH----HCCcchHHHHHHHHHHHHHHHcc
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN---CIDA---QVIFSFLD----ANDIGKTHSVYYIAYALHMESKS 164 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~---~~d~---~~if~~L~----~~~IG~~~AlfYe~~A~~lE~~~ 164 (378)
.-...+++++..+.. ..+......+|...+.. ..+. ..+|.-.. ..+-....+..|...|.++...|
T Consensus 201 ~A~~~~~~a~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 201 DAVIAHEQRLLIAKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp HHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 356677777766554 33445555566666643 2333 34443222 23334455788889999999999
Q ss_pred ChHHHHHHHHHHHHc
Q 017043 165 KMKAANDLFSLGISR 179 (378)
Q Consensus 165 ~~~~A~~Iy~~Gi~~ 179 (378)
++.+|...|+..+..
T Consensus 278 ~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAI 292 (338)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998875
No 99
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=42.01 E-value=1.2e+02 Score=25.66 Aligned_cols=32 Identities=6% Similarity=-0.163 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 149 HSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 149 ~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
++..|...+.++...|++++|.+.|+..+...
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55677788888888999999999999888765
No 100
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=41.79 E-value=1.6e+02 Score=28.31 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
+..|...+..+...|++++|.++|+..+..
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 444445555555555555555555555543
No 101
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=41.56 E-value=95 Score=22.21 Aligned_cols=48 Identities=6% Similarity=0.045 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 132 DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 132 d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
.+..+|.-+.... ...+..|...|..+...|++.+|..+|+.++....
T Consensus 27 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 74 (125)
T 1na0_A 27 EAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (125)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 3455555554432 23345677788899999999999999999998654
No 102
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=40.54 E-value=44 Score=23.20 Aligned_cols=31 Identities=3% Similarity=0.064 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
+..|...|..+...|+|.+|...|+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 39 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 39 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3445555666666777777777777777654
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=40.46 E-value=23 Score=29.01 Aligned_cols=75 Identities=9% Similarity=-0.004 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAA 169 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A 169 (378)
-+..+++++.. ||....+|+.++.. ..++...|.-+....=...-+..+...+.++...|++.+|
T Consensus 93 a~~~~~~al~~---------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 93 ELKRLEQELAA---------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHHHHHHH---------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 36777777764 34445666666643 3455677777766654433344667788999999999999
Q ss_pred HHHHHHHHHc
Q 017043 170 NDLFSLGISR 179 (378)
Q Consensus 170 ~~Iy~~Gi~~ 179 (378)
...|+..|.+
T Consensus 164 ~~~y~~al~~ 173 (176)
T 2r5s_A 164 ASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 104
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=40.02 E-value=1.4e+02 Score=29.09 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=53.6
Q ss_pred CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHc----
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESK---- 163 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~---- 163 (378)
..-...+++++.. ||.+..+|...+.. ..++...|.-..... -. +..|...|..+...
T Consensus 120 ~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~lg~~~~~~~~~~ 187 (474)
T 4abn_A 120 PEAEVLLSKAVKL---------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KN-KVSLQNLSMVLRQLQTDS 187 (474)
T ss_dssp HHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CC-HHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-HHHHHHHHHHHHHhccCC
Confidence 3455667777654 34445566665543 345567777766654 33 58888899999999
Q ss_pred -----cChHHHHHHHHHHHHccC
Q 017043 164 -----SKMKAANDLFSLGISRNA 181 (378)
Q Consensus 164 -----~~~~~A~~Iy~~Gi~~~A 181 (378)
|++.+|.+.|+..++...
T Consensus 188 ~~~~~g~~~~A~~~~~~al~~~p 210 (474)
T 4abn_A 188 GDEHSRHVMDSVRQAKLAVQMDV 210 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhhhhhhHHHHHHHHHHHHHhCC
Confidence 999999999999998653
No 105
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=38.95 E-value=93 Score=28.39 Aligned_cols=87 Identities=5% Similarity=-0.167 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc---cCCH---HHHHHHHHH----CCcchHHHHHHHHHHHHH
Q 017043 91 GDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN---CIDA---QVIFSFLDA----NDIGKTHSVYYIAYALHM 160 (378)
Q Consensus 91 ~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~---~~d~---~~if~~L~~----~~IG~~~AlfYe~~A~~l 160 (378)
|....-...+++++..+... .+......+|..++.. ..+. ...|.-... .+-....+..|...|.++
T Consensus 277 g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 277 GQFEDAAEHYKRTLALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 33334567777777766543 3444445666666653 2333 444433222 122345577888999999
Q ss_pred HHccChHHHHHHHHHHHHcc
Q 017043 161 ESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 161 E~~~~~~~A~~Iy~~Gi~~~ 180 (378)
...|++.+|.+.|+..+...
T Consensus 354 ~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 354 SAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 106
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=38.63 E-value=59 Score=29.70 Aligned_cols=49 Identities=6% Similarity=-0.035 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 130 CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 130 ~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
..++...|.-+.. +....+..+...+.++...|++++|.++|+..+...
T Consensus 117 ~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 117 MEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp SSHHHHHHHHHHH--HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4556666666554 234445566667777777777777777777777654
No 107
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=38.55 E-value=65 Score=22.24 Aligned_cols=48 Identities=6% Similarity=0.045 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 132 DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 132 d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
.+...|.-..... ...+..|...|..+...|++++|...|+..+....
T Consensus 27 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 27 EAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3344454444322 23345666788889999999999999999998753
No 108
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=38.45 E-value=1.2e+02 Score=25.27 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
..+...|.-... +....+..|...|..+...|++.+|..+|+.++...-.
T Consensus 59 ~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 59 KEAADYFDIAIK--KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp HHHHHHHHHHHH--TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHH--hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 445666666554 44456778888999999999999999999999986544
No 109
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=37.75 E-value=1.2e+02 Score=28.45 Aligned_cols=89 Identities=13% Similarity=-0.024 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHhcccccccch--hhHHHHHHHHh----hccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHH
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDD--LRYLNVWLEYA----ENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKA 168 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD--~RyLkiWl~Ya----~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~ 168 (378)
.-..++++++....+....... ..+...++.+. .....+...|.-+... .......|...|.++...|++++
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHH
Confidence 3456667776655444322211 22222222222 2234456666665543 34456778888999999999999
Q ss_pred HHHHHHHHHHccCCchH
Q 017043 169 ANDLFSLGISRNAQPTE 185 (378)
Q Consensus 169 A~~Iy~~Gi~~~A~P~~ 185 (378)
|...|+..+...-.-.+
T Consensus 468 A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 468 AITLFEESADLARTMEE 484 (514)
T ss_dssp HHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhccccHH
Confidence 99999999997655433
No 110
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=37.31 E-value=53 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
+..|...|..+...|++++|...|+.++.....
T Consensus 40 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 40 SKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 345667788889999999999999999987654
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=37.29 E-value=1.6e+02 Score=26.39 Aligned_cols=84 Identities=15% Similarity=-0.026 Sum_probs=53.4
Q ss_pred CCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHH----CCcchHHHHHHHHHHHHH
Q 017043 91 GDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDA----NDIGKTHSVYYIAYALHM 160 (378)
Q Consensus 91 ~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~----~~IG~~~AlfYe~~A~~l 160 (378)
|.-..-+..+++++..+..... ......+|...+.. ..++...|.-... .+.-...+..|...+..+
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEER---LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 3433456777788877665421 22234556555543 2345556654443 222234566888888888
Q ss_pred HHccChHHHHHHHHHHH
Q 017043 161 ESKSKMKAANDLFSLGI 177 (378)
Q Consensus 161 E~~~~~~~A~~Iy~~Gi 177 (378)
...|++.+|...|+..+
T Consensus 206 ~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHh
Confidence 99999999999999999
No 112
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=37.19 E-value=58 Score=29.11 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=41.4
Q ss_pred hccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 128 ENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 128 ~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.....+..+|.-+....-....+..|...+..+...|++.+|..+|+..+...-.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 249 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3455667777776654433225778888999999999999999999999987543
No 113
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=37.16 E-value=25 Score=22.81 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=18.7
Q ss_pred HHHHHHHHHccChHHHHHHHH
Q 017043 154 IAYALHMESKSKMKAANDLFS 174 (378)
Q Consensus 154 e~~A~~lE~~~~~~~A~~Iy~ 174 (378)
..|++++-+.|..++|+.|-+
T Consensus 6 aQW~eYYrsiG~~~eAeaIe~ 26 (33)
T 2bn5_A 6 AQWAEYYRSVGKIEEAEAIEK 26 (33)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHH
Confidence 579999999999999999844
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=36.96 E-value=72 Score=25.51 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 147 KTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 147 ~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
-..+..|...+.++...|++++|...|+..|+-.-
T Consensus 62 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p 96 (150)
T 4ga2_A 62 ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP 96 (150)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 34455666677777777888888888877777543
No 115
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=36.41 E-value=1.3e+02 Score=22.56 Aligned_cols=37 Identities=5% Similarity=-0.129 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 145 IGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 145 IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
.|...+..|..+|..+...|++++|...|+..+.-.-
T Consensus 41 ~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 41 STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 4777889999999999999999999999999997543
No 116
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=36.24 E-value=1.3e+02 Score=27.03 Aligned_cols=82 Identities=7% Similarity=-0.119 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc---cCCH---HHHHHHHH----HCCcchHHHHHHHHHHHHHHHcc
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN---CIDA---QVIFSFLD----ANDIGKTHSVYYIAYALHMESKS 164 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~---~~d~---~~if~~L~----~~~IG~~~AlfYe~~A~~lE~~~ 164 (378)
.-...+++++..+... .+......+|...+.. ..+. ...|.-.. ..+--...+..|...|.++...|
T Consensus 205 ~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 281 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 281 (406)
T ss_dssp HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC
Confidence 3456777777665542 3344444455555543 2333 33333222 22333444778888899999999
Q ss_pred ChHHHHHHHHHHHHc
Q 017043 165 KMKAANDLFSLGISR 179 (378)
Q Consensus 165 ~~~~A~~Iy~~Gi~~ 179 (378)
++.+|...|+.++..
T Consensus 282 ~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAI 296 (406)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999988864
No 117
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=35.97 E-value=57 Score=30.22 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=44.2
Q ss_pred HHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 119 YLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 119 yLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
...+|...+.. ..++..+|.-+... +...+..|...+..+...|++.+|..+|+..+.....
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 126 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34555555542 24456777766654 3445778888999999999999999999999986543
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=35.89 E-value=1.8e+02 Score=24.57 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 149 HSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 149 ~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
++..+...|.++...|+|.+|...|+..|.....
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 3444566788999999999999999999987654
No 119
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=35.61 E-value=65 Score=31.88 Aligned_cols=102 Identities=11% Similarity=0.150 Sum_probs=60.6
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccc----------cchhhHHHHHHH-Hhhc-----------
Q 017043 72 PLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCY----------KDDLRYLNVWLE-YAEN----------- 129 (378)
Q Consensus 72 PL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~Y----------knD~RyLkiWl~-Ya~~----------- 129 (378)
+|+-|-+-+.=+....+ .. -+....|++..=.++...... .|-.+.+.||+. .-+.
T Consensus 225 ~l~~WkE~La~i~t~a~-~e-~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~~~~~~~~~~~~~~~s~ 302 (399)
T 2pm7_A 225 DVSQWKFISKAIQNLYP-ND-IAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLSEFPDLEDKLKKDNKTI 302 (399)
T ss_dssp CGGGHHHHHHHHHHHCT-TC-HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHSHHHHHHHHHHTTCCH
T ss_pred ChhhHHHHHHHHHhcCC-cc-HhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHhcchhhhccccccCCc
Confidence 58888888887766543 22 012333333333333322111 356788999987 2211
Q ss_pred -------cCCH---HHHHHHHHH---CCcchHHHHHHHHHHHHHHHccChHHHHHHHHH
Q 017043 130 -------CIDA---QVIFSFLDA---NDIGKTHSVYYIAYALHMESKSKMKAANDLFSL 175 (378)
Q Consensus 130 -------~~d~---~~if~~L~~---~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~ 175 (378)
..+- ..||.+... .-.+..++.+|.+||.+|...|++..|...+..
T Consensus 303 ~~~~~~~Lqe~iEkv~vl~~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~~yL~~ 361 (399)
T 2pm7_A 303 YEAHSECMTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELATEFLNS 361 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 1111 123333321 125677999999999999999999999999975
No 120
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=35.58 E-value=68 Score=23.79 Aligned_cols=35 Identities=6% Similarity=0.038 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 149 HSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 149 ~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
.+..|...|..+...|++.+|...|+..+.....-
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 34566677888889999999999999999876443
No 121
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=35.44 E-value=1.5e+02 Score=24.36 Aligned_cols=78 Identities=6% Similarity=0.027 Sum_probs=49.5
Q ss_pred CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChH
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMK 167 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~ 167 (378)
..-..++++++....++ ..+|+.++.. ..++..+|.-+... ....+..|...|..+...|+++
T Consensus 108 ~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 108 KEAKDMFEKALRAGMEN---------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHHHHHHHHHTCCS---------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHH
Confidence 34567778887765432 2244444432 23445555554443 3344567778888888899999
Q ss_pred HHHHHHHHHHHccCC
Q 017043 168 AANDLFSLGISRNAQ 182 (378)
Q Consensus 168 ~A~~Iy~~Gi~~~A~ 182 (378)
+|..+|+..+...-.
T Consensus 177 ~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999998887543
No 122
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=34.97 E-value=1.3e+02 Score=26.96 Aligned_cols=82 Identities=6% Similarity=-0.160 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc---cCCH---HHHHHHHH----HCCcchHHHHHHHHHHHHHHHcc
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN---CIDA---QVIFSFLD----ANDIGKTHSVYYIAYALHMESKS 164 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~---~~d~---~~if~~L~----~~~IG~~~AlfYe~~A~~lE~~~ 164 (378)
.-...+++++..+... .+......+|...+.. ..+. ...|.-.. ..+-....+..|...|.++...|
T Consensus 245 ~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 245 TASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 4567777777766553 3444445666666643 2333 34443322 22333455778889999999999
Q ss_pred ChHHHHHHHHHHHHc
Q 017043 165 KMKAANDLFSLGISR 179 (378)
Q Consensus 165 ~~~~A~~Iy~~Gi~~ 179 (378)
++.+|...|+..++.
T Consensus 322 ~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 322 NHDQAMHFAEKHLEI 336 (406)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998875
No 123
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=34.94 E-value=1.1e+02 Score=27.93 Aligned_cols=82 Identities=6% Similarity=-0.105 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc---cC---CHHHHHHHHH----HCCcchHHHHHHHHHHHHHHHcc
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN---CI---DAQVIFSFLD----ANDIGKTHSVYYIAYALHMESKS 164 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~---~~---d~~~if~~L~----~~~IG~~~AlfYe~~A~~lE~~~ 164 (378)
.-+..+++++..+.+. .+......+|...+.. .. .+...|.-.. ..+--...+..|...|.++...|
T Consensus 241 ~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (411)
T 4a1s_A 241 AAIEHHQERLRIAREF---GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLH 317 (411)
T ss_dssp HHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 4567777777766553 3444444555555543 23 3344444322 22333355788899999999999
Q ss_pred ChHHHHHHHHHHHHc
Q 017043 165 KMKAANDLFSLGISR 179 (378)
Q Consensus 165 ~~~~A~~Iy~~Gi~~ 179 (378)
++.+|...|+.++..
T Consensus 318 ~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 318 EFNTAIEYHNRHLAI 332 (411)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999875
No 124
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=33.82 E-value=72 Score=31.41 Aligned_cols=75 Identities=13% Similarity=-0.065 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAA 169 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A 169 (378)
-+.++++++.. ++....+|..++.. ..++...|.-..... ...+..|...|..+...|++++|
T Consensus 25 A~~~~~~Al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 25 AIKFYSQAIEL---------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp HHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHh---------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34555555554 23334555555532 345566666666543 34566677889999999999999
Q ss_pred HHHHHHHHHccC
Q 017043 170 NDLFSLGISRNA 181 (378)
Q Consensus 170 ~~Iy~~Gi~~~A 181 (378)
.+.|+.+++...
T Consensus 94 ~~~~~~al~~~p 105 (477)
T 1wao_1 94 LRDYETVVKVKP 105 (477)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHhCC
Confidence 999999998653
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=33.75 E-value=1.3e+02 Score=21.60 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
+..|...|..+...|++.+|..+|+.++.....
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 556677788888899999999999999987544
No 126
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.61 E-value=50 Score=27.40 Aligned_cols=32 Identities=13% Similarity=0.347 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Q 017043 147 KTHSVYYIAYALHMESKSKMKAANDLFSLGIS 178 (378)
Q Consensus 147 ~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~ 178 (378)
.+-|.=|+.=|.-++..|+-.+|.+.|+.||.
T Consensus 19 h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 34466788888888889999999999999997
No 127
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=32.98 E-value=2.3e+02 Score=33.28 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=62.7
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHH---------HcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHh--
Q 017043 59 RLIEAIDKYEGDDPLQPWLECIKWVQE---------AFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYA-- 127 (378)
Q Consensus 59 ~~~~~i~~~~gdDPL~~w~~YI~W~~~---------~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya-- 127 (378)
.+.++++-++--+.-.+|..|-+..+. +|-. ++-..-+.++...+.....|..=++||..-++..
T Consensus 1091 nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiK----AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1091 NLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHh----cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 344444433334556778877776653 2211 2233445556777777778888888886644433
Q ss_pred ------------hccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHH
Q 017043 128 ------------ENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLG 176 (378)
Q Consensus 128 ------------~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~G 176 (378)
+. +...++=.|+. +...+.++ .||..|+..|+|.+|...|...
T Consensus 1167 ~~Idt~LafaYAKl-~rleele~fI~----~~n~ad~~-~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1167 SYVETELIFALAKT-NRLAELEEFIN----GPNNAHIQ-QVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred ccccHHHHHHHHhh-cCHHHHHHHHh----CCCHHHHH-HHHHHHHhcCCHHHHHHHHHhh
Confidence 22 33333223331 33444444 5888888888888888888874
No 128
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=32.93 E-value=59 Score=25.28 Aligned_cols=32 Identities=6% Similarity=0.013 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 149 HSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 149 ~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
.|+-|..-+..+...|+|++|.+.|+.+|.-.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~ 38 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD 38 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45555566666777777777777777777654
No 129
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=32.74 E-value=46 Score=32.35 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHH
Q 017043 152 YYIAYALHMESKSKMKAANDLFSLGIS 178 (378)
Q Consensus 152 fYe~~A~~lE~~~~~~~A~~Iy~~Gi~ 178 (378)
.|...+..+...|++++|.++|+..+.
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555554444
No 130
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding, structural genomics, NPPSFA; 2.00A {Mus musculus} PDB: 2dwg_A 2cxf_A 2cxl_A
Probab=32.65 E-value=17 Score=32.00 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=45.8
Q ss_pred HHHHHhcccccccchhhHHHHHHHHhhccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHH
Q 017043 102 QCVRRFWHSQCYKDDLRYLNVWLEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHME 161 (378)
Q Consensus 102 rc~~~f~~~e~YknD~RyLkiWl~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE 161 (378)
.+++.+...+.-+.|.=-.+.||.+|=+..-=...+..|.++. .-+..||+.||.++.
T Consensus 88 ~~~~~v~~l~~i~T~~Gr~RawIR~aL~ek~L~~~l~~l~~~~--~~l~~~Y~~~All~~ 145 (180)
T 2dwk_A 88 EITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKK--ELLSEFYEVNALMME 145 (180)
T ss_dssp HHHHHHHTCTTCCSHHHHHHHHHHHHHHHTCHHHHHHHHHTCH--HHHTTTBCTTSGGGS
T ss_pred HHHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHHHHHhCh--HHHHhhCCCCccccC
Confidence 4666677888889998889999999966666667778888763 467889999998754
No 131
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=31.46 E-value=60 Score=31.70 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHCCc-chHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 130 CIDAQVIFSFLDANDI-GKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 130 ~~d~~~if~~L~~~~I-G~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
..++...|.-.....- ....+..|...|..+...|+|.+|.+.|+..++..-.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3445666665555321 1267888999999999999999999999999986543
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=30.86 E-value=1.5e+02 Score=27.26 Aligned_cols=85 Identities=11% Similarity=-0.048 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcccccc------cchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHc
Q 017043 96 LVVIYEQCVRRFWHSQCY------KDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESK 163 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~Y------knD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~ 163 (378)
-+..+++++....+...+ ..++....+|+.++.+ ..++...|.-.... ....+..|-..|..+...
T Consensus 166 A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 243 (336)
T 1p5q_A 166 ALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAV 243 (336)
T ss_dssp HHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHC
Confidence 445566666554433211 1223345666666653 23445666655543 344566677788889999
Q ss_pred cChHHHHHHHHHHHHccCC
Q 017043 164 SKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 164 ~~~~~A~~Iy~~Gi~~~A~ 182 (378)
|+|.+|...|+..++....
T Consensus 244 g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 244 NDFELARADFQKVLQLYPN 262 (336)
T ss_dssp TCHHHHHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHHCCC
Confidence 9999999999999986543
No 133
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=30.77 E-value=83 Score=27.08 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHCC---cchHHHHHHHHHHHHHHH--------ccChHHHHHHHHHHHHccC
Q 017043 130 CIDAQVIFSFLDAND---IGKTHSVYYIAYALHMES--------KSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 130 ~~d~~~if~~L~~~~---IG~~~AlfYe~~A~~lE~--------~~~~~~A~~Iy~~Gi~~~A 181 (378)
...+...|.-+.... .-...|+|+ -+..+.. .|++.+|...|+..|...-
T Consensus 68 ~~~A~~~~~~~l~~~p~~~~~~~a~~~--lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 68 YLLAASEYERFIQIYQIDPRVPQAEYE--RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHH--HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCCchhHHHHHH--HHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 445677777666542 222334444 4555666 9999999999999998654
No 134
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=30.66 E-value=2e+02 Score=24.70 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAA 169 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A 169 (378)
-..++++++... +....+|..++.. ...+..+|.-+....-....+. ...+..+...|++++|
T Consensus 110 A~~~~~~a~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 110 ARRYLSKATTLE---------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM--LYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHHHHHHHTTC---------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH--HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhC---------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH--HHHHHHHHHHhhHHHH
Confidence 456666666432 2233345554432 2344556655554443333333 3366677777888888
Q ss_pred HHHHHHHHHccCC
Q 017043 170 NDLFSLGISRNAQ 182 (378)
Q Consensus 170 ~~Iy~~Gi~~~A~ 182 (378)
.++|+..+...-.
T Consensus 179 ~~~~~~al~~~~~ 191 (330)
T 3hym_B 179 ERFFSQALSIAPE 191 (330)
T ss_dssp HHHHHHHHTTCTT
T ss_pred HHHHHHHHHhCCC
Confidence 8888887776533
No 135
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=30.63 E-value=1.4e+02 Score=25.04 Aligned_cols=50 Identities=14% Similarity=0.017 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
+.+...|.-... +.-..+..|...+..+...|++++|...|+..|+..-.
T Consensus 71 ~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 71 DKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 344556655444 33445677788888999999999999999999986543
No 136
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=30.44 E-value=83 Score=25.02 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 132 DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 132 d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.+..+|.-.... ....+.+|...|..+...|+|.+|...|+..|...-.
T Consensus 29 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 29 KAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 445555544432 3345778888899999999999999999999997644
No 137
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=30.40 E-value=65 Score=23.80 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
+..|...|..+...|+|++|...|+..|...-.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 39 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD 39 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 445667788889999999999999999987644
No 138
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=30.25 E-value=68 Score=24.99 Aligned_cols=33 Identities=9% Similarity=-0.025 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
.+|.-|-.-+..+...|+|++|.+.|+.+|+..
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~ 43 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD 43 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455566666777777888888888888888754
No 139
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=28.55 E-value=68 Score=23.02 Aligned_cols=32 Identities=6% Similarity=-0.092 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
+..|...+..+...|+|.+|...|+..|...-
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 35 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP 35 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 44455667777778888888888888887643
No 140
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=28.49 E-value=80 Score=33.38 Aligned_cols=64 Identities=6% Similarity=0.024 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 116 DLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 116 D~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
||.+...|..++.. ..++...|.-... |--..+..|...|..+...|++++|.+.|+.+|+.+-
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 55666777776653 2345566655443 4456678888999999999999999999999998654
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=27.78 E-value=2.1e+02 Score=25.44 Aligned_cols=46 Identities=7% Similarity=-0.195 Sum_probs=33.3
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 133 AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 133 ~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
+...|.-.. .+....+..|...|..+...|++.+|...|+.++...
T Consensus 57 A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 57 ALADCRRAL--ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHT--TSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344444433 4444555666777888999999999999999998854
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=27.73 E-value=1.1e+02 Score=22.95 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=34.6
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 133 AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 133 ~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
+...|.-.... ....+.+|...|..+...|+|.+|...|+.++...-.
T Consensus 28 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 28 AAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 34444443332 2334677888899999999999999999999986543
No 143
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=27.22 E-value=2.5e+02 Score=24.82 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
..+..|..-+..+...|++.+|...|+..|.-
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 106 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34677888889999999999999999999874
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=26.99 E-value=1.2e+02 Score=21.50 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 149 HSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 149 ~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.+..|...|..+...|++.+|...|+.++.....
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 37 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 3566777788888899999999999999987543
No 145
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=26.75 E-value=54 Score=29.31 Aligned_cols=31 Identities=10% Similarity=0.441 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCcchHHHHHHHHHHHHHHHcc
Q 017043 134 QVIFSFLDANDIGKTHSVYYIAYALHMESKS 164 (378)
Q Consensus 134 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~ 164 (378)
..++.||..+||...+|.|=..|+...|...
T Consensus 160 ~~l~~YLeeRGI~~~la~fl~~y~~~KE~~E 190 (203)
T 1yqf_A 160 NCVMTYLEKRGVDEKLGEFVVLYSFWAEQQD 190 (203)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999888753
No 146
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=26.65 E-value=2.4e+02 Score=22.31 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHH
Q 017043 96 LVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAA 169 (378)
Q Consensus 96 L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A 169 (378)
....+++++... +.+..+|...+.. ..++...|.-... +....+..|...|..+...|++++|
T Consensus 92 a~~~~~~a~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 92 AIDALQRAIALN---------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhC---------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCHHHH
Confidence 445555555432 2333455555532 3455666665554 3445577788889999999999999
Q ss_pred HHHHHHHHHcc
Q 017043 170 NDLFSLGISRN 180 (378)
Q Consensus 170 ~~Iy~~Gi~~~ 180 (378)
.+.|+.+|+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999999753
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=26.62 E-value=3.2e+02 Score=23.86 Aligned_cols=30 Identities=10% Similarity=-0.087 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 151 VYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 151 lfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
..|...|..+...|+|++|...|+.+|.-.
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999753
No 148
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=26.26 E-value=1.1e+02 Score=26.52 Aligned_cols=100 Identities=8% Similarity=-0.006 Sum_probs=57.2
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHH
Q 017043 69 GDDPLQPWLECIKWVQEAFPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDA 142 (378)
Q Consensus 69 gdDPL~~w~~YI~W~~~~yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~ 142 (378)
.++|......|+.-....+-.| .-..-+.++++++... +....+|...+.. ..++...|.-+..
T Consensus 14 ~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 83 (327)
T 3cv0_A 14 ANNPYMYHENPMEEGLSMLKLA-NLAEAALAFEAVCQAA---------PEREEAWRSLGLTQAENEKDGLAIIALNHARM 83 (327)
T ss_dssp SSCGGGGSSCHHHHHHHHHHTT-CHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccchhhhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4445443333333333333222 2223445666666542 2233455544432 2344566665554
Q ss_pred CCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 143 NDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 143 ~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
. ....+..|...|..+...|++.+|...|+..+...
T Consensus 84 ~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 119 (327)
T 3cv0_A 84 L--DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 119 (327)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred c--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3 44456677788888999999999999999998764
No 149
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=26.19 E-value=4e+02 Score=24.89 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=51.2
Q ss_pred cCCCCCCCcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHHHHCCcchHHHHHHHHHHHHH
Q 017043 87 FPAGGDSSGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFLDANDIGKTHSVYYIAYALHM 160 (378)
Q Consensus 87 yp~g~~~s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L~~~~IG~~~AlfYe~~A~~l 160 (378)
|-..|....-+.++++++....+ ...+|+..+.. ...+...|.-+... .......|...|..+
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLNPE---------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLL 354 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 43334444566777777755332 23345555432 23445666655553 333445677788888
Q ss_pred HHccChHHHHHHHHHHHHccC
Q 017043 161 ESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 161 E~~~~~~~A~~Iy~~Gi~~~A 181 (378)
...|++.+|..+|+..+....
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFP 375 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHcCCHHHHHHHHHHHHHhCC
Confidence 888888888888888887653
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=26.14 E-value=1.7e+02 Score=21.19 Aligned_cols=33 Identities=12% Similarity=-0.042 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
+..|...|..+...|++.+|...|+..+.....
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 566777888889999999999999999986543
No 151
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=25.95 E-value=1.8e+02 Score=27.07 Aligned_cols=52 Identities=12% Similarity=-0.184 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 130 CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 130 ~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
...+..+|.-+.... ...+..|...|..+...|++++|..+|+..+...-..
T Consensus 55 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 106 (514)
T 2gw1_A 55 LKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN 106 (514)
T ss_dssp HHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 345567777666543 4445667778899999999999999999999876433
No 152
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=25.41 E-value=56 Score=28.72 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=27.2
Q ss_pred HHHHHHHHHCCcchHHHHHHHHHHHHHHHc
Q 017043 134 QVIFSFLDANDIGKTHSVYYIAYALHMESK 163 (378)
Q Consensus 134 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~ 163 (378)
..++.||..+||-..+|.|=.+|+...|..
T Consensus 139 ~~l~~yLeeRGI~~~la~fl~~y~~~KEq~ 168 (182)
T 3jv1_A 139 DSFTSYLSARGVNDTLANFIDQFSLWSEQA 168 (182)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999988875
No 153
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=25.13 E-value=1.3e+02 Score=21.77 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 149 HSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 149 ~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
.+..|...|..+...|++.+|...|+..+...
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 68 (131)
T 1elr_A 37 NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (131)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 35667778888889999999999999998864
No 154
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=25.12 E-value=56 Score=29.29 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=26.8
Q ss_pred HHHHHHHHHCCcchHHHHHHHHHHHHHHHc
Q 017043 134 QVIFSFLDANDIGKTHSVYYIAYALHMESK 163 (378)
Q Consensus 134 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~ 163 (378)
..++.||..+||-..+|.|=..|+...|..
T Consensus 164 ~~l~~yLeeRGI~~~la~fl~~y~~~KE~~ 193 (209)
T 1p32_A 164 DHLMDFLADRGVDNTFADELVELSTALEHQ 193 (209)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999887765
No 155
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=24.65 E-value=3.1e+02 Score=24.90 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc------cCCHHHHHHHH----HHCCcchHHHHHHHHHHHHHHHcc
Q 017043 95 GLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN------CIDAQVIFSFL----DANDIGKTHSVYYIAYALHMESKS 164 (378)
Q Consensus 95 ~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~------~~d~~~if~~L----~~~~IG~~~AlfYe~~A~~lE~~~ 164 (378)
.-+..+++++..|.....| +++...++...+.. ...+.+.|.-. ...+--...+..|...|..+...|
T Consensus 161 ~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 161 FSMDYARQAYEIYKEHEAY--NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHTCSTT--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 4566777777777665432 34444444444432 22333433322 222333455667777888888888
Q ss_pred ChHHHHHHHHHHHH
Q 017043 165 KMKAANDLFSLGIS 178 (378)
Q Consensus 165 ~~~~A~~Iy~~Gi~ 178 (378)
++.+|...|+.++.
T Consensus 239 ~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 239 QYEDAIPYFKRAIA 252 (383)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888888887
No 156
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=24.58 E-value=62 Score=25.61 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHc---cChHHHHHHHHHHHH
Q 017043 147 KTHSVYYIAYALHMESK---SKMKAANDLFSLGIS 178 (378)
Q Consensus 147 ~~~AlfYe~~A~~lE~~---~~~~~A~~Iy~~Gi~ 178 (378)
.+.|.=|+.=|.-.+.. |+-.+|.+.|+.||.
T Consensus 13 h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 13 HKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHH
Confidence 35577788888888888 999999999999997
No 157
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=24.52 E-value=2.7e+02 Score=24.58 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHc-cChHHHHHHHHHHHHc
Q 017043 148 THSVYYIAYALHMESK-SKMKAANDLFSLGISR 179 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~-~~~~~A~~Iy~~Gi~~ 179 (378)
..+..|...+.+++.. |++.+|...|+.++.-
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 3466788889999996 9999999999999874
No 158
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=24.47 E-value=3.9e+02 Score=24.01 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 133 AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 133 ~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
+.+.|.-+.... ...+..|...+..+...|++.+|.++|+..+..
T Consensus 256 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 256 AIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444322 222334555555555666666666666665554
No 159
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=24.41 E-value=1.9e+02 Score=24.19 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHccCCc
Q 017043 150 SVYYIAYALHMESKSKMKAANDLFSLGISRNAQP 183 (378)
Q Consensus 150 AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~P 183 (378)
+.++...|..+...|++++|...|+.+|+..-.-
T Consensus 54 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 54 SKLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 3444567888999999999999999999976543
No 160
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=23.13 E-value=1.4e+02 Score=21.13 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 132 DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 132 d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
++...|.-.... ....+..|...|..+...|+|.+|.+.|+.++.....
T Consensus 22 ~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 22 EAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 344455444432 2334566778889999999999999999999987654
No 161
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=23.12 E-value=2.5e+02 Score=22.67 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHcc
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRN 180 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~ 180 (378)
..+...|.-.... ....+..|...|..+...|++.+|.+.|+..+...
T Consensus 54 ~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 54 TEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh--CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 3445555554443 34456778888999999999999999999999854
No 162
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=23.04 E-value=1.2e+02 Score=24.15 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=30.6
Q ss_pred HCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 142 ANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 142 ~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
.-.+-...+..|-..|.++...|+|++|.+.|+..|..+-.
T Consensus 23 a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~ 63 (150)
T 4ga2_A 23 STPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER 63 (150)
T ss_dssp HSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 33344444555556788889999999999999999987543
No 163
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=22.86 E-value=2.5e+02 Score=24.95 Aligned_cols=51 Identities=6% Similarity=0.002 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 130 CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 130 ~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
...+.++|.-.... ....+..|...+..+...|++.+|..+|+.++...-.
T Consensus 229 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 229 FNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34556777766553 3445667888899999999999999999999987543
No 164
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=22.64 E-value=2.1e+02 Score=24.77 Aligned_cols=49 Identities=14% Similarity=0.029 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 131 IDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 131 ~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
..+...|.-+... .......|...|..+...|++++|..+|+.++....
T Consensus 54 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 54 KAALPDLTKVIAL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 4456666655543 344557788899999999999999999999998754
No 165
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=22.61 E-value=5.4e+02 Score=25.04 Aligned_cols=83 Identities=6% Similarity=-0.067 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcccccccchhhHHHHH---HHHhhccCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHH
Q 017043 98 VIYEQCVRRFWHSQCYKDDLRYLNVW---LEYAENCIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFS 174 (378)
Q Consensus 98 ~lLErc~~~f~~~e~YknD~RyLkiW---l~Ya~~~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~ 174 (378)
.-|.+.++.-...+.=.+|++...+- ..+....+.+...+.-..... ..++.|...+..++..|++.+|.+-|.
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444433344446788766553 222233344455555444443 347788888999999999999999999
Q ss_pred HHHHccCCc
Q 017043 175 LGISRNAQP 183 (378)
Q Consensus 175 ~Gi~~~A~P 183 (378)
.++..+-.+
T Consensus 335 ~AlrL~P~~ 343 (372)
T 3ly7_A 335 TAFNLRPGA 343 (372)
T ss_dssp HHHHHSCSH
T ss_pred HHHhcCCCc
Confidence 999885433
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=22.52 E-value=1.1e+02 Score=24.18 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHc
Q 017043 148 THSVYYIAYALHMESKSKMKAANDLFSLGISR 179 (378)
Q Consensus 148 ~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~ 179 (378)
..|.-|..-+..+...|+|.+|...|..+|..
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~ 40 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTR 40 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999986
No 167
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=21.44 E-value=3.1e+02 Score=24.22 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHhhccC--CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 116 DLRYLNVWLEYAENCI--DAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 116 D~RyLkiWl~Ya~~~~--d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
....+...+.++.... ++...|.-..... -..+..+...|..|...|++++|...|+..+...-.
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 3555666666665433 3455555544433 344566778899999999999999999999997644
No 168
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=20.74 E-value=2.9e+02 Score=23.59 Aligned_cols=50 Identities=10% Similarity=-0.011 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccC
Q 017043 130 CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNA 181 (378)
Q Consensus 130 ~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A 181 (378)
..++..+|.-+....- ..+..|...|..+...|++.+|...|+..+....
T Consensus 37 ~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 86 (327)
T 3cv0_A 37 LAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86 (327)
T ss_dssp HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 3455666666655433 3445566678888888889999888888888654
No 169
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.62 E-value=1.5e+02 Score=23.65 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHHHhcccccccchhhHHHHHHHHhhc-cCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcc----ChH-
Q 017043 94 SGLVVIYEQCVRRFWHSQCYKDDLRYLNVWLEYAEN-CIDAQVIFSFLDANDIGKTHSVYYIAYALHMESKS----KMK- 167 (378)
Q Consensus 94 s~L~~lLErc~~~f~~~e~YknD~RyLkiWl~Ya~~-~~d~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~----~~~- 167 (378)
.++..-+|.|....++. ++-+|.|-.. ...|+++|.-++.+||=..- +.|..++..++ .|.
T Consensus 25 dg~i~~fe~t~Elawk~---------~k~~l~~~g~~~~s~rd~~r~a~~~glI~~~----~~w~~m~~~RN~~vH~Y~~ 91 (119)
T 1wty_A 25 DSAIQRFEFTFELAWKT---------LKTFLELQGLEARSPRAAIRGAFQVGLLPED----PFWLEMLELRNLTNHTYDE 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHTCCCSSHHHHHHHHHHHTSSCCC----HHHHHHHHHHHHGGGTTSH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHcCCCCCCHHHHHHHHHHcCCCCcH----HHHHHHHHHhhHhcccccH
Confidence 45666777776665443 4555555443 67899999999999996554 67777777654 333
Q ss_pred -HHHHHHH
Q 017043 168 -AANDLFS 174 (378)
Q Consensus 168 -~A~~Iy~ 174 (378)
.|..||.
T Consensus 92 ~~a~~v~~ 99 (119)
T 1wty_A 92 ALAERIYA 99 (119)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 4555654
No 170
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=20.08 E-value=1.9e+02 Score=21.48 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHccChHHHHHHHHHHHHccCC
Q 017043 133 AQVIFSFLDANDIGKTHSVYYIAYALHMESKSKMKAANDLFSLGISRNAQ 182 (378)
Q Consensus 133 ~~~if~~L~~~~IG~~~AlfYe~~A~~lE~~~~~~~A~~Iy~~Gi~~~A~ 182 (378)
+...|.-.... ....+..|...|..+...|+|.+|...|+..|...-.
T Consensus 23 A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 23 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 34444433332 2334577788888889999999999999999986543
Done!