BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017047
         (378 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P61552|EFCB_PAPAN ERV-BabFcenv provirus ancestral Env polyprotein OS=Papio anubis
           PE=3 SV=1
          Length = 579

 Score = 37.7 bits (86), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 101 TKQTITADSAVGKKTNTVLSEPVRRSLPEIRRSSLPSVVTKPTSTRASVSQTRKSVPISP 160
           T   IT DS    +  ++   P+ R+ P+    +LP   + P S+    +Q       +P
Sbjct: 273 TAFNITTDSTSSSQATSLPQVPLYRN-PQ--SQTLPFCYSTPNSSWCDRTQAPSRTQTAP 329

Query: 161 VG------RSLSKSTGSDAKTETLK-KASTKPALSVASSSRRVSSMSLDSSGSNVSRKTI 213
           VG      ++LSK+    + T++L    S  P+L++ S        S  SS +N+ ++ +
Sbjct: 330 VGGYFWCNQTLSKTLNHASITQSLCVPVSLVPSLTLYSEGELAELASQLSSSNNIQKQAV 389

Query: 214 SK--VSSPSVRSPSVSSGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDS 259
               +   S+ S  V+SGL  G+L+ S+  +  LS Q +A    S +S
Sbjct: 390 FLPLIIGVSLASSLVASGLGTGALTHSIQSTQTLSTQVQAAIEASAES 437


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.123    0.324 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,436,410
Number of Sequences: 539616
Number of extensions: 4799022
Number of successful extensions: 24695
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 1093
Number of HSP's that attempted gapping in prelim test: 19284
Number of HSP's gapped (non-prelim): 4083
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)