Query 017047
Match_columns 378
No_of_seqs 274 out of 1719
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:08:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617 Ras suppressor protein 99.3 1E-13 2.2E-18 129.2 -4.4 113 223-355 72-189 (264)
2 PF14580 LRR_9: Leucine-rich r 99.1 3.5E-11 7.7E-16 109.9 3.1 110 243-354 13-128 (175)
3 PF14580 LRR_9: Leucine-rich r 98.9 3.7E-10 7.9E-15 103.3 2.4 98 260-360 8-109 (175)
4 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.7E-14 81.6 4.0 58 273-330 2-61 (61)
5 KOG4194 Membrane glycoprotein 98.8 1.1E-09 2.3E-14 116.1 1.0 125 230-354 173-308 (873)
6 KOG4194 Membrane glycoprotein 98.8 2.8E-09 6E-14 113.0 3.7 106 249-354 102-212 (873)
7 PLN00113 leucine-rich repeat r 98.8 7E-09 1.5E-13 112.8 6.5 109 245-353 160-274 (968)
8 PLN00113 leucine-rich repeat r 98.8 7.2E-09 1.6E-13 112.7 6.5 110 245-354 184-299 (968)
9 KOG0444 Cytoskeletal regulator 98.7 4.7E-10 1E-14 119.6 -3.8 109 245-354 218-331 (1255)
10 KOG0617 Ras suppressor protein 98.7 1.5E-09 3.3E-14 101.6 -2.7 95 257-352 64-163 (264)
11 KOG0444 Cytoskeletal regulator 98.7 2.7E-09 5.9E-14 113.9 -1.4 99 254-353 83-187 (1255)
12 PF13855 LRR_8: Leucine rich r 98.6 2.1E-08 4.5E-13 75.0 3.2 56 296-351 1-61 (61)
13 PLN03150 hypothetical protein; 98.6 7.4E-08 1.6E-12 102.5 6.7 77 255-331 424-503 (623)
14 KOG0531 Protein phosphatase 1, 98.6 1.3E-08 2.8E-13 102.2 0.8 111 245-357 91-204 (414)
15 KOG1259 Nischarin, modulator o 98.6 1.4E-08 2.9E-13 101.6 0.4 110 243-354 278-389 (490)
16 KOG0618 Serine/threonine phosp 98.6 8.7E-09 1.9E-13 113.2 -1.2 104 246-350 380-487 (1081)
17 KOG0472 Leucine-rich repeat pr 98.5 9.1E-09 2E-13 105.5 -2.3 95 256-352 213-310 (565)
18 PLN03150 hypothetical protein; 98.5 1.6E-07 3.5E-12 99.9 6.2 82 274-355 420-506 (623)
19 KOG4237 Extracellular matrix p 98.5 5.1E-08 1.1E-12 99.7 1.5 92 269-360 271-367 (498)
20 KOG0531 Protein phosphatase 1, 98.4 8E-08 1.7E-12 96.6 2.1 100 256-356 79-179 (414)
21 KOG0472 Leucine-rich repeat pr 98.4 3.8E-08 8.3E-13 101.0 -0.2 97 256-353 419-542 (565)
22 PRK15387 E3 ubiquitin-protein 98.4 4.4E-07 9.5E-12 99.6 6.0 91 255-354 368-460 (788)
23 KOG1859 Leucine-rich repeat pr 98.4 1.1E-08 2.3E-13 110.7 -6.3 116 236-353 170-293 (1096)
24 KOG1259 Nischarin, modulator o 98.4 7.3E-08 1.6E-12 96.4 -0.4 104 250-355 308-415 (490)
25 PRK15387 E3 ubiquitin-protein 98.3 1E-06 2.2E-11 96.8 7.5 75 251-331 224-315 (788)
26 KOG1859 Leucine-rich repeat pr 98.3 2.4E-08 5.3E-13 107.9 -5.0 94 272-376 187-283 (1096)
27 KOG0618 Serine/threonine phosp 98.3 6.5E-08 1.4E-12 106.5 -2.1 97 257-354 367-467 (1081)
28 KOG4237 Extracellular matrix p 98.3 8.8E-08 1.9E-12 98.0 -1.9 101 252-354 49-155 (498)
29 cd00116 LRR_RI Leucine-rich re 98.2 4.5E-07 9.8E-12 85.0 2.1 83 270-352 163-263 (319)
30 KOG1644 U2-associated snRNP A' 98.2 1.1E-06 2.4E-11 83.5 3.5 101 250-352 20-126 (233)
31 KOG1644 U2-associated snRNP A' 98.2 2.4E-06 5.2E-11 81.3 5.3 98 251-349 44-150 (233)
32 PRK15370 E3 ubiquitin-protein 98.2 3.3E-06 7.1E-11 92.4 7.1 96 250-354 221-319 (754)
33 cd00116 LRR_RI Leucine-rich re 98.1 6.7E-07 1.4E-11 83.8 -0.1 82 272-353 137-235 (319)
34 KOG0532 Leucine-rich repeat (L 98.1 4.1E-07 8.9E-12 96.5 -2.2 121 231-353 122-248 (722)
35 PRK15370 E3 ubiquitin-protein 98.0 8.6E-06 1.9E-10 89.2 7.1 96 250-354 200-298 (754)
36 COG4886 Leucine-rich repeat (L 97.9 7.4E-06 1.6E-10 80.6 4.1 101 249-350 116-220 (394)
37 COG4886 Leucine-rich repeat (L 97.9 4.4E-06 9.5E-11 82.2 2.2 108 246-354 160-270 (394)
38 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.7E-10 57.9 3.4 36 274-310 3-38 (44)
39 KOG0532 Leucine-rich repeat (L 97.9 7.3E-07 1.6E-11 94.7 -4.7 78 252-331 101-179 (722)
40 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.4E-10 56.4 3.8 36 296-331 1-37 (44)
41 KOG4579 Leucine-rich repeat (L 97.8 1.5E-06 3.2E-11 79.0 -3.4 101 254-354 32-138 (177)
42 PLN03210 Resistant to P. syrin 97.6 0.00013 2.9E-09 82.8 7.7 99 249-349 611-714 (1153)
43 PLN03210 Resistant to P. syrin 97.6 0.0002 4.3E-09 81.4 9.0 98 250-349 590-691 (1153)
44 KOG2123 Uncharacterized conser 97.3 8.2E-06 1.8E-10 81.2 -5.3 94 249-345 19-123 (388)
45 KOG3207 Beta-tubulin folding c 97.2 0.00011 2.4E-09 76.4 1.4 86 271-356 221-318 (505)
46 KOG2739 Leucine-rich acidic nu 97.1 0.00029 6.2E-09 68.8 2.4 86 267-354 38-131 (260)
47 KOG2739 Leucine-rich acidic nu 96.9 0.00034 7.4E-09 68.3 1.6 77 270-347 63-151 (260)
48 KOG4579 Leucine-rich repeat (L 96.9 7.6E-05 1.7E-09 68.1 -3.3 88 243-331 47-136 (177)
49 KOG1909 Ran GTPase-activating 96.8 0.00022 4.7E-09 72.4 -1.1 105 250-354 93-228 (382)
50 KOG2123 Uncharacterized conser 96.8 5E-05 1.1E-09 75.7 -5.8 78 273-352 20-101 (388)
51 KOG3207 Beta-tubulin folding c 96.7 0.00056 1.2E-08 71.3 1.2 86 271-356 245-343 (505)
52 KOG4658 Apoptotic ATPase [Sign 96.7 0.00055 1.2E-08 76.6 0.8 79 271-350 570-653 (889)
53 KOG1909 Ran GTPase-activating 96.6 0.0011 2.4E-08 67.4 2.1 87 272-358 157-260 (382)
54 KOG4658 Apoptotic ATPase [Sign 96.4 0.0011 2.3E-08 74.4 1.1 93 257-350 531-629 (889)
55 PF13306 LRR_5: Leucine rich r 96.2 0.014 3E-07 48.1 6.3 54 273-328 36-91 (129)
56 KOG2982 Uncharacterized conser 96.2 0.0014 3.1E-08 66.1 0.4 83 270-352 69-159 (418)
57 KOG2982 Uncharacterized conser 96.0 0.0032 6.9E-08 63.7 1.9 123 252-374 74-231 (418)
58 KOG3665 ZYG-1-like serine/thre 95.7 0.0075 1.6E-07 66.1 3.2 81 270-352 171-263 (699)
59 PF13306 LRR_5: Leucine rich r 95.2 0.074 1.6E-06 43.7 6.7 80 270-352 10-93 (129)
60 KOG3665 ZYG-1-like serine/thre 95.1 0.01 2.2E-07 65.1 1.9 85 270-354 146-235 (699)
61 COG5238 RNA1 Ran GTPase-activa 94.9 0.015 3.3E-07 58.4 2.2 118 244-361 87-236 (388)
62 PRK15386 type III secretion pr 94.4 0.058 1.2E-06 56.3 5.1 57 249-311 52-110 (426)
63 KOG0473 Leucine-rich repeat pr 93.1 0.0025 5.5E-08 62.6 -7.0 102 250-352 19-124 (326)
64 PF00560 LRR_1: Leucine Rich R 92.5 0.072 1.6E-06 33.0 1.3 17 274-290 2-18 (22)
65 PRK15386 type III secretion pr 91.8 0.33 7.2E-06 50.8 6.1 57 270-331 50-108 (426)
66 PF00560 LRR_1: Leucine Rich R 90.7 0.1 2.2E-06 32.4 0.7 15 297-311 1-15 (22)
67 smart00369 LRR_TYP Leucine-ric 88.7 0.3 6.5E-06 30.9 1.7 21 272-292 2-22 (26)
68 smart00370 LRR Leucine-rich re 88.7 0.3 6.5E-06 30.9 1.7 21 272-292 2-22 (26)
69 COG5238 RNA1 Ran GTPase-activa 88.2 0.39 8.5E-06 48.6 2.9 90 263-352 83-198 (388)
70 PF13504 LRR_7: Leucine rich r 88.1 0.36 7.7E-06 28.5 1.6 14 274-287 3-16 (17)
71 KOG0473 Leucine-rich repeat pr 85.3 0.03 6.4E-07 55.3 -6.4 80 251-331 44-124 (326)
72 smart00365 LRR_SD22 Leucine-ri 84.5 0.8 1.7E-05 30.1 2.0 18 296-313 2-19 (26)
73 PF13504 LRR_7: Leucine rich r 84.4 0.65 1.4E-05 27.4 1.4 15 297-311 2-16 (17)
74 smart00365 LRR_SD22 Leucine-ri 81.2 1.1 2.3E-05 29.5 1.7 19 339-357 2-20 (26)
75 smart00370 LRR Leucine-rich re 79.5 1.6 3.4E-05 27.5 2.0 16 296-311 2-17 (26)
76 smart00369 LRR_TYP Leucine-ric 79.5 1.6 3.4E-05 27.5 2.0 16 296-311 2-17 (26)
77 KOG3864 Uncharacterized conser 75.3 0.49 1.1E-05 45.6 -1.8 86 263-348 92-185 (221)
78 KOG3763 mRNA export factor TAP 72.2 1.4 3E-05 47.7 0.4 33 296-328 218-254 (585)
79 PF13516 LRR_6: Leucine Rich r 71.4 2.1 4.5E-05 26.6 0.9 14 318-331 2-15 (24)
80 KOG3763 mRNA export factor TAP 66.4 2.9 6.2E-05 45.4 1.3 63 269-331 215-283 (585)
81 KOG1947 Leucine rich repeat pr 61.7 3.4 7.4E-05 40.8 0.8 83 269-351 211-307 (482)
82 smart00368 LRR_RI Leucine rich 57.7 8.2 0.00018 25.2 1.8 14 318-331 2-15 (28)
83 smart00364 LRR_BAC Leucine-ric 56.5 7 0.00015 26.0 1.3 17 273-289 3-19 (26)
84 KOG4308 LRR-containing protein 51.8 0.82 1.8E-05 48.3 -5.7 83 271-353 203-304 (478)
85 KOG2120 SCF ubiquitin ligase, 50.5 1.8 3.9E-05 44.4 -3.2 61 271-331 209-273 (419)
86 KOG2120 SCF ubiquitin ligase, 48.8 1.1 2.3E-05 46.1 -5.2 80 273-352 186-273 (419)
87 TIGR00864 PCC polycystin catio 46.3 11 0.00024 47.6 1.9 28 279-306 2-29 (2740)
88 KOG4308 LRR-containing protein 41.7 2.4 5.3E-05 44.8 -4.0 102 251-352 89-217 (478)
89 TIGR00864 PCC polycystin catio 39.3 18 0.00039 46.0 2.1 31 302-332 1-33 (2740)
90 KOG1947 Leucine rich repeat pr 30.7 21 0.00046 35.3 0.7 62 270-331 241-308 (482)
91 KOG3864 Uncharacterized conser 20.6 20 0.00043 34.9 -1.5 79 274-353 80-166 (221)
No 1
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=1e-13 Score=129.22 Aligned_cols=113 Identities=25% Similarity=0.261 Sum_probs=98.7
Q ss_pred CCccccccCCCCcccccccccchhccccccccccCCCceeecCcccccCCCcceEEecCCcCC--ccCccccCCCCCccE
Q 017047 223 SPSVSSGLRNGSLSSSLDRSSNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVR--SLIASGLNLQPNLEF 300 (378)
Q Consensus 223 s~~~s~~l~~~~l~~~l~rL~sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~Ls--sL~~s~f~lL~nLe~ 300 (378)
-++||++.+...|+.+|+||..|+. +|..||. |..|||.+|+|. .++.+ |..+..|+.
T Consensus 72 p~~issl~klr~lnvgmnrl~~lpr------------gfgs~p~-------levldltynnl~e~~lpgn-ff~m~tlra 131 (264)
T KOG0617|consen 72 PTSISSLPKLRILNVGMNRLNILPR------------GFGSFPA-------LEVLDLTYNNLNENSLPGN-FFYMTTLRA 131 (264)
T ss_pred ChhhhhchhhhheecchhhhhcCcc------------ccCCCch-------hhhhhccccccccccCCcc-hhHHHHHHH
Confidence 4678999999999999999888888 8888887 556999999997 46655 445589999
Q ss_pred EEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCC-C-CCCCCCCCCCeeecccccccccc
Q 017047 301 VYLRDNMLSTL-EGIEILTRVKVLDLSFNDFK-G-PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 301 LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
|||++|+|.-+ +.++.|++||.|.|.+|++- + .+++.|.+|++|++.+|+++.+.
T Consensus 132 lyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 132 LYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred HHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 99999999999 89999999999999999977 5 78899999999999999998653
No 2
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=3.5e-11 Score=109.91 Aligned_cols=110 Identities=19% Similarity=0.250 Sum_probs=43.5
Q ss_pred cchhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCC-CCCCC
Q 017047 243 SNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIE-ILTRV 320 (378)
Q Consensus 243 ~sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~-~LtnL 320 (378)
..+.+-.+...+++++|+|..+......+.+|+.|||++|.|+.+. ++..+..|+.|+|.+|+|+.+ +++. .|++|
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3344455567889999999998876556788999999999999998 477789999999999999999 5564 68999
Q ss_pred cEEeCCCCCCC-C---CCCCCCCCCCeeeccccccccc
Q 017047 321 KVLDLSFNDFK-G---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 321 q~LdLS~N~Ls-~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+.|+|++|+|. . ..+..|++|+.|++.+|.++..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 99999999998 3 4556778899999999999744
No 3
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=3.7e-10 Score=103.27 Aligned_cols=98 Identities=30% Similarity=0.366 Sum_probs=33.4
Q ss_pred ceeecCcccccCCCcceEEecCCcCCccCccccC-CCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCCC--CCC-
Q 017047 260 RFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLN-LQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG--PGF- 335 (378)
Q Consensus 260 rfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~-lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls~--~~f- 335 (378)
.|..+|+. .++..+++|+|.+|+|..|.. +. .+.+|+.|+|++|.|..+++|..|.+|+.|+|++|+|+. ..+
T Consensus 8 ~i~~~~~~-~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 8 MIEQIAQY-NNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp -----------------------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHH
T ss_pred cccccccc-ccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchH
Confidence 34445543 345678999999999999974 43 468999999999999999999999999999999999993 334
Q ss_pred CCCCCCCeeeccccccccccccchh
Q 017047 336 EPLENCKALQFCSNCILLETKLHLL 360 (378)
Q Consensus 336 ~~L~nLk~LdLsnNrIs~i~~L~lL 360 (378)
..|++|+.|++.+|+|..+..+..+
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L 109 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPL 109 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGG
T ss_pred HhCCcCCEEECcCCcCCChHHhHHH
Confidence 3588999999999999877665444
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.2e-09 Score=81.63 Aligned_cols=58 Identities=28% Similarity=0.442 Sum_probs=51.9
Q ss_pred CcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCC
Q 017047 273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDF 330 (378)
Q Consensus 273 sL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~L 330 (378)
+|+.|+|++|+|+.++...|..+++|++|+|++|.|..+ ..|.+|++|++|+|++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578899999999999988898889999999999999988 5788999999999999986
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.81 E-value=1.1e-09 Score=116.12 Aligned_cols=125 Identities=22% Similarity=0.211 Sum_probs=97.0
Q ss_pred cCCCCcccccccccc-----hhccccccccccCCCceeecCccccc-CCCcceEEecCCcCCccCccccCCCCCccEEEc
Q 017047 230 LRNGSLSSSLDRSSN-----LSGQRRAGTPQSKDSRFIVLPQVEIK-AGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYL 303 (378)
Q Consensus 230 l~~~~l~~~l~rL~s-----L~~~~~~~T~dlrdnrfs~LP~l~~K-lssL~~LDLSgN~LssL~~s~f~lL~nLe~LdL 303 (378)
....-|....+|..+ |......+++.+..|+++.+|.-.+| +.+|+.|||..|+|+-+....|+.++.|+.|.|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 333444444444433 44444678888999999999999887 999999999999999887777888888888888
Q ss_pred CCCCCCCc--ccCCCCCCCcEEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 304 RDNMLSTL--EGIEILTRVKVLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 304 s~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
..|+|..+ ..|..|.++++|+|..|+|+. .++.+|..|+.|++++|.|..+
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 88888888 667888888888888888882 5667788888888888877643
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.80 E-value=2.8e-09 Score=113.00 Aligned_cols=106 Identities=21% Similarity=0.282 Sum_probs=76.9
Q ss_pred ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS 326 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS 326 (378)
.|.--.-++.|.+..+|......++|+.|+|.+|.|+.+....+..++.|+.|||+.|.|+.+ +.|..-.+|++|+|+
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence 333344466777777777666666777888888888877777777777777778877777777 567777777788888
Q ss_pred CCCCC-C--CCCCCCCCCCeeeccccccccc
Q 017047 327 FNDFK-G--PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 327 ~N~Ls-~--~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|+ . ..|..|.+|..|.|.+|+|+.+
T Consensus 182 ~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 182 SNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred cccccccccccccccchheeeecccCccccc
Confidence 88777 2 6677777777777777777654
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.78 E-value=7e-09 Score=112.84 Aligned_cols=109 Identities=21% Similarity=0.225 Sum_probs=79.8
Q ss_pred hhccccccccccCCCcee-ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs-~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
+....+...+++.+|.|. .+|..+.++.+|++|||++|+|.+..+..+..+.+|+.|+|.+|.|.+. ..|..+++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 344455666777777664 5666666777788888888887766666677777888888888887754 5677888888
Q ss_pred EEeCCCCCCCC---CCCCCCCCCCeeecccccccc
Q 017047 322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~ 353 (378)
+|+|++|++.+ ..|..|.+|+.|++.+|.|..
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 88888888773 567778888888888887764
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.78 E-value=7.2e-09 Score=112.72 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=90.3
Q ss_pred hhccccccccccCCCcee-ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs-~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
+....+..++++.+|++. .+|..+.++.+|+.|+|++|++.+..+..+..+++|+.|+|.+|.|.+. ..|..+++|+
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 445566777888888876 4677777888999999999999877666778889999999999998765 6788999999
Q ss_pred EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
.|+|++|.|.+ ..|..+.+|+.|++.+|.|...
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred EEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 99999999874 5678889999999999988643
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.75 E-value=4.7e-10 Score=119.57 Aligned_cols=109 Identities=22% Similarity=0.284 Sum_probs=86.4
Q ss_pred hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEE
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVL 323 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~L 323 (378)
|...||..-.|+.+|.+..+|++.+++.+|+.|+|++|+|+.+.-. .....+|+.|+|+.|+|+.+ .+++.|++|+.|
T Consensus 218 ld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKL 296 (1255)
T ss_pred hhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccchHHHhhhHHHHHH
Confidence 4445566678999999999999999999999999999999988643 23336788899999988888 677888888888
Q ss_pred eCCCCCCC--C--CCCCCCCCCCeeeccccccccc
Q 017047 324 DLSFNDFK--G--PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 324 dLS~N~Ls--~--~~f~~L~nLk~LdLsnNrIs~i 354 (378)
++.+|+|. + .+++.|.+|+.+.+.+|.|..+
T Consensus 297 y~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV 331 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV 331 (1255)
T ss_pred HhccCcccccCCccchhhhhhhHHHHhhccccccC
Confidence 88888877 2 6677777777777777776644
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.67 E-value=1.5e-09 Score=101.57 Aligned_cols=95 Identities=26% Similarity=0.286 Sum_probs=48.9
Q ss_pred CCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCC--c-ccCCCCCCCcEEeCCCCCCC-C
Q 017047 257 KDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST--L-EGIEILTRVKVLDLSFNDFK-G 332 (378)
Q Consensus 257 rdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~--L-~~f~~LtnLq~LdLS~N~Ls-~ 332 (378)
.+|++..+|..+..+..|+.|++.-|+|..++. +|+.++.|++|||.+|.+.. + ..|..++-|+.|||++|+|+ +
T Consensus 64 ~nnqie~lp~~issl~klr~lnvgmnrl~~lpr-gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~l 142 (264)
T KOG0617|consen 64 SNNQIEELPTSISSLPKLRILNVGMNRLNILPR-GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL 142 (264)
T ss_pred ccchhhhcChhhhhchhhhheecchhhhhcCcc-ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC
Confidence 344444444444444444444444444444433 34445555555555555543 2 34555555555556666655 2
Q ss_pred -CCCCCCCCCCeeeccccccc
Q 017047 333 -PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 333 -~~f~~L~nLk~LdLsnNrIs 352 (378)
.+++.|.+|+.|.+.+|.+-
T Consensus 143 p~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred ChhhhhhcceeEEeeccCchh
Confidence 55666666666666666543
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.66 E-value=2.7e-09 Score=113.88 Aligned_cols=99 Identities=23% Similarity=0.237 Sum_probs=82.4
Q ss_pred cccCCCceee--cCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCC
Q 017047 254 PQSKDSRFIV--LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFND 329 (378)
Q Consensus 254 ~dlrdnrfs~--LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~ 329 (378)
.+.|+|.+.+ +|..++++.+|..|||++|+|+..|.+ +....++-+|+|++|+|..| .-|.+|+-|-.|||++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 3457777765 888888999999999999999988864 55558899999999999998 557889999999999999
Q ss_pred CC-C-CCCCCCCCCCeeecccccccc
Q 017047 330 FK-G-PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 330 Ls-~-~~f~~L~nLk~LdLsnNrIs~ 353 (378)
|. + +.+..|.+|+.|+|++|.|..
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhH
Confidence 98 4 777888899999999998753
No 12
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=2.1e-08 Score=74.95 Aligned_cols=56 Identities=32% Similarity=0.513 Sum_probs=51.9
Q ss_pred CCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCCC---CCCCCCCCCCeeecccccc
Q 017047 296 PNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKG---PGFEPLENCKALQFCSNCI 351 (378)
Q Consensus 296 ~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrI 351 (378)
++|+.|+|.+|+|..+ ..|..+++|++|+|++|.|+. ..|..|.+|++|++.+|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999999 578999999999999999993 7899999999999999986
No 13
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=7.4e-08 Score=102.48 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=36.5
Q ss_pred ccCCCcee-ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC
Q 017047 255 QSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK 331 (378)
Q Consensus 255 dlrdnrfs-~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls 331 (378)
++.+|.|. .+|..+.++.+|+.|+|++|+|.+..+..+..+++|+.|+|++|+|.+. ..+..|.+|+.|+|++|+|+
T Consensus 424 ~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred ECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 33344333 2444444445555555555555543333344445555555555555433 33455555555555555554
No 14
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.58 E-value=1.3e-08 Score=102.25 Aligned_cols=111 Identities=23% Similarity=0.261 Sum_probs=71.8
Q ss_pred hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD 324 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld 324 (378)
|........+++.+|+|..+...+..+.+|++|||++|+|+.+.. +..+..|+.|++.+|.|..+.+|..+.+|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCccchhhhccc
Confidence 444455555666677666666644456667777777777777663 455556777777777777776666677777777
Q ss_pred CCCCCCCC-CC--CCCCCCCCeeecccccccccccc
Q 017047 325 LSFNDFKG-PG--FEPLENCKALQFCSNCILLETKL 357 (378)
Q Consensus 325 LS~N~Ls~-~~--f~~L~nLk~LdLsnNrIs~i~~L 357 (378)
|++|+|.. .. ...+.+|+.|++.+|.|..+..+
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~ 204 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIREIEGL 204 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchhcccch
Confidence 77777763 33 36666677777777776655443
No 15
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=1.4e-08 Score=101.56 Aligned_cols=110 Identities=22% Similarity=0.190 Sum_probs=87.4
Q ss_pred cchhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCccc-CCCCCCCc
Q 017047 243 SNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEG-IEILTRVK 321 (378)
Q Consensus 243 ~sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~-f~~LtnLq 321 (378)
..+..++..-++|+.+|.|..|-....-+..++.|+|++|.|..+.. +..+.+|+.|||++|.|+.+.+ -..|.|++
T Consensus 278 ~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred EecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 34556778888899988877776655556778999999999998874 6777899999999999988844 46788888
Q ss_pred EEeCCCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFK-GPGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|.|++|.|. +.+++.|-.|.+||+.+|+|...
T Consensus 356 tL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 356 TLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred eeehhhhhHhhhhhhHhhhhheeccccccchhhH
Confidence 8888888888 57777788888888888888643
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.55 E-value=8.7e-09 Score=113.17 Aligned_cols=104 Identities=23% Similarity=0.304 Sum_probs=72.1
Q ss_pred hccccccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047 246 SGQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD 324 (378)
Q Consensus 246 ~~~~~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld 324 (378)
.+-.+...+++.+|++..||.... |+.+|+.|+|+||+|+.|+.. ...|..|+.|...+|+|..++.+..+..|++||
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~t-va~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lD 458 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDT-VANLGRLHTLRAHSNQLLSFPELAQLPQLKVLD 458 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHH-HHhhhhhHHHhhcCCceeechhhhhcCcceEEe
Confidence 333445566677777777776544 666777777777777777743 334466777777777777777777888888888
Q ss_pred CCCCCCCC---CCCCCCCCCCeeeccccc
Q 017047 325 LSFNDFKG---PGFEPLENCKALQFCSNC 350 (378)
Q Consensus 325 LS~N~Ls~---~~f~~L~nLk~LdLsnNr 350 (378)
|+.|+|+. ..-....+|++||+.+|.
T Consensus 459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhhhhhhhCCCcccceeeccCCc
Confidence 88888882 333444788888888887
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.51 E-value=9.1e-09 Score=105.49 Aligned_cols=95 Identities=25% Similarity=0.248 Sum_probs=58.6
Q ss_pred cCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCCC--
Q 017047 256 SKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFKG-- 332 (378)
Q Consensus 256 lrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls~-- 332 (378)
++.|++..+| .+..|..|.+|.+..|+|.-++......+..|..|||++|+|..+ .+++-|++|.+|||++|.|+.
T Consensus 213 L~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 213 LRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred hhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCC
Confidence 4555555555 233455555555555555555555554556666777777777666 566666777777777777773
Q ss_pred CCCCCCCCCCeeeccccccc
Q 017047 333 PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 333 ~~f~~L~nLk~LdLsnNrIs 352 (378)
..+++| +|+.|.+.+|.|.
T Consensus 292 ~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cccccc-eeeehhhcCCchH
Confidence 566666 6777777777664
No 18
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=1.6e-07 Score=99.90 Aligned_cols=82 Identities=23% Similarity=0.355 Sum_probs=73.5
Q ss_pred cceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCCC---CCCCCCCCCCeeeccc
Q 017047 274 DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKG---PGFEPLENCKALQFCS 348 (378)
Q Consensus 274 L~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~---~~f~~L~nLk~LdLsn 348 (378)
+..|+|++|.|.+..+..+..+.+|+.|+|++|.|.+. ..|..|.+|+.|||++|+|.+ ..|+.|.+|+.|+|.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67899999999987777788889999999999999865 579999999999999999995 5689999999999999
Q ss_pred ccccccc
Q 017047 349 NCILLET 355 (378)
Q Consensus 349 NrIs~i~ 355 (378)
|.|.+..
T Consensus 500 N~l~g~i 506 (623)
T PLN03150 500 NSLSGRV 506 (623)
T ss_pred CcccccC
Confidence 9988543
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.46 E-value=5.1e-08 Score=99.72 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=84.1
Q ss_pred ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCCC---CCCCCCCCCCe
Q 017047 269 IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKG---PGFEPLENCKA 343 (378)
Q Consensus 269 ~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~---~~f~~L~nLk~ 343 (378)
.++.+|+.|+|++|+|+.|.+..|..+..|++|+|..|+|..+ ..|.++.+|+.|+|.+|+|+. ..|..+..|..
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 4788999999999999999999999999999999999999999 678999999999999999993 78899999999
Q ss_pred eeccccccccccccchh
Q 017047 344 LQFCSNCILLETKLHLL 360 (378)
Q Consensus 344 LdLsnNrIs~i~~L~lL 360 (378)
|++..|.+.....+.|+
T Consensus 351 l~l~~Np~~CnC~l~wl 367 (498)
T KOG4237|consen 351 LNLLSNPFNCNCRLAWL 367 (498)
T ss_pred eehccCcccCccchHHH
Confidence 99999999877766544
No 20
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=8e-08 Score=96.57 Aligned_cols=100 Identities=26% Similarity=0.242 Sum_probs=86.2
Q ss_pred cCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCC-CCC
Q 017047 256 SKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK-GPG 334 (378)
Q Consensus 256 lrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls-~~~ 334 (378)
++.|.+..+-.....+.+|+.|+|.+|+|..+... +..+.+|++|+|++|+|..+.++..|..|+.|++.+|.|. ..+
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~ 157 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG 157 (414)
T ss_pred cchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccchhhccchhhheeccCcchhccC
Confidence 66666665444455678899999999999999842 5667999999999999999999999999999999999999 588
Q ss_pred CCCCCCCCeeeccccccccccc
Q 017047 335 FEPLENCKALQFCSNCILLETK 356 (378)
Q Consensus 335 f~~L~nLk~LdLsnNrIs~i~~ 356 (378)
|..|.+|+.|++.+|+|..+..
T Consensus 158 ~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred CccchhhhcccCCcchhhhhhh
Confidence 8889999999999999997766
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.43 E-value=3.8e-08 Score=101.03 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=69.2
Q ss_pred cCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCC-----------------------Cc-
Q 017047 256 SKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS-----------------------TL- 311 (378)
Q Consensus 256 lrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs-----------------------~L- 311 (378)
+++|.+..+|..+..+.+|..|+|++|.|..+|...+.. ..|+.|+|+.|+|. .+
T Consensus 419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~l-v~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 419 LSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSL-VRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred hhcCccccchHHHHhhhcceeeecccchhhhcchhhhhh-hhhheecccccccccchHHHhhHHHHHHHHhccccccccC
Confidence 455555444544455666666666666666666554433 44666666666554 33
Q ss_pred -ccCCCCCCCcEEeCCCCCCCC--CCCCCCCCCCeeecccccccc
Q 017047 312 -EGIEILTRVKVLDLSFNDFKG--PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 312 -~~f~~LtnLq~LdLS~N~Ls~--~~f~~L~nLk~LdLsnNrIs~ 353 (378)
.++.++.+|.+|||.+|+|.. +++++|.+|++|++.+|.|..
T Consensus 498 ~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCC
Confidence 247789999999999999993 899999999999999999983
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.37 E-value=4.4e-07 Score=99.56 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=65.8
Q ss_pred ccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCC-C-
Q 017047 255 QSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK-G- 332 (378)
Q Consensus 255 dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls-~- 332 (378)
++.+|+|..+|.. ...|..|+|++|+|..++.. ..+|+.|+|++|+|..++.+ +.+|+.|+|++|+|+ +
T Consensus 368 ~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP 438 (788)
T PRK15387 368 WAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLP 438 (788)
T ss_pred hhhccccccCccc---ccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccC
Confidence 3455555555543 23577777888877776631 25688888888888877543 357888999999998 4
Q ss_pred CCCCCCCCCCeeeccccccccc
Q 017047 333 PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 333 ~~f~~L~nLk~LdLsnNrIs~i 354 (378)
..|+.|.+|..|+|.+|.|+..
T Consensus 439 ~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 439 ESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hHHhhccCCCeEECCCCCCCch
Confidence 5678899999999999999854
No 23
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=1.1e-08 Score=110.66 Aligned_cols=116 Identities=24% Similarity=0.194 Sum_probs=88.4
Q ss_pred cccccccc----chhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc
Q 017047 236 SSSLDRSS----NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL 311 (378)
Q Consensus 236 ~~~l~rL~----sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L 311 (378)
+-+-+||. +|....-...+++++|+|...- .+..+.+|++|||++|+|+.++......|. |+.|.|++|.++.+
T Consensus 170 ~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 170 SFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL 247 (1096)
T ss_pred hcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh
Confidence 33445553 3444455566788888888776 344678899999999999998876665655 99999999999999
Q ss_pred ccCCCCCCCcEEeCCCCCCCC----CCCCCCCCCCeeecccccccc
Q 017047 312 EGIEILTRVKVLDLSFNDFKG----PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 312 ~~f~~LtnLq~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~ 353 (378)
.++.+|.+|+.|||++|-|.. .-+..|..|..|+|.+|.|-+
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 899999999999999998883 344556678888999998753
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=7.3e-08 Score=96.43 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=88.8
Q ss_pred cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCC
Q 017047 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFND 329 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~ 329 (378)
+...+++.+|++..+-. ...+.+|+.|||++|.|..+...... +.|++.|.|.+|.|..+.++..|-.|..||+++|+
T Consensus 308 kir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~K-LGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 308 KLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLK-LGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred ceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhh-hcCEeeeehhhhhHhhhhhhHhhhhheeccccccc
Confidence 34456678888887766 44578899999999999999865443 58999999999999999999999999999999999
Q ss_pred CCC----CCCCCCCCCCeeecccccccccc
Q 017047 330 FKG----PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 330 Ls~----~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
|.. .+++.|+.|+.|.|.+|.|..+.
T Consensus 386 Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 386 IEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 993 78999999999999999998653
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.32 E-value=1e-06 Score=96.78 Aligned_cols=75 Identities=21% Similarity=0.250 Sum_probs=38.7
Q ss_pred ccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccC-----------------CCCCccEEEcCCCCCCCccc
Q 017047 251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLN-----------------LQPNLEFVYLRDNMLSTLEG 313 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~-----------------lL~nLe~LdLs~NkLs~L~~ 313 (378)
...+++.+|+|..+|.. +.+|++|+|++|+|+.++.. +. .+.+|+.|+|.+|+|..++.
T Consensus 224 L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l-p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~ 299 (788)
T PRK15387 224 ITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL-PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 299 (788)
T ss_pred CCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc-ccccceeeccCCchhhhhhchhhcCEEECcCCccccccc
Confidence 34445555666666542 34566666666666655421 00 11234444444444444422
Q ss_pred CCCCCCCcEEeCCCCCCC
Q 017047 314 IEILTRVKVLDLSFNDFK 331 (378)
Q Consensus 314 f~~LtnLq~LdLS~N~Ls 331 (378)
.+.+|+.|+|++|+|+
T Consensus 300 --~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 300 --LPPGLQELSVSDNQLA 315 (788)
T ss_pred --cccccceeECCCCccc
Confidence 2356777777777766
No 26
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=2.4e-08 Score=107.95 Aligned_cols=94 Identities=23% Similarity=0.292 Sum_probs=54.3
Q ss_pred CCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccC--CCCCCCcEEeCCCCCCC-CCCCCCCCCCCeeeccc
Q 017047 272 GDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGI--EILTRVKVLDLSFNDFK-GPGFEPLENCKALQFCS 348 (378)
Q Consensus 272 ssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f--~~LtnLq~LdLS~N~Ls-~~~f~~L~nLk~LdLsn 348 (378)
..|+.|||++|++.... ++..|+.|+.|||+.|.|..++.| .+|. |+.|.|++|.++ +.++.+|.+|+.||+++
T Consensus 187 ~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred HHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhH
Confidence 34555666666666555 344456666666666666655333 2333 666666666666 45566666666666666
Q ss_pred cccccccccchhhccCCCCchhHhhhhc
Q 017047 349 NCILLETKLHLLEASQSFPIWSFSLLLK 376 (378)
Q Consensus 349 NrIs~i~~L~lL~~l~~FPiws~~~L~~ 376 (378)
|.|..- ..--|.|.+..|.+
T Consensus 264 Nll~~h--------seL~pLwsLs~L~~ 283 (1096)
T KOG1859|consen 264 NLLSEH--------SELEPLWSLSSLIV 283 (1096)
T ss_pred hhhhcc--------hhhhHHHHHHHHHH
Confidence 666533 23446677776654
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.30 E-value=6.5e-08 Score=106.51 Aligned_cols=97 Identities=25% Similarity=0.247 Sum_probs=84.4
Q ss_pred CCCceee--cCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCC-C
Q 017047 257 KDSRFIV--LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFK-G 332 (378)
Q Consensus 257 rdnrfs~--LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls-~ 332 (378)
.||.|.. +|. +....+|+.|+|+||+|..++...+..+..|++|+|++|+|+.+ ..+..|..|++|...+|+|. .
T Consensus 367 anN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f 445 (1081)
T KOG0618|consen 367 ANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF 445 (1081)
T ss_pred hcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec
Confidence 3444443 443 33466799999999999999999999999999999999999999 78899999999999999999 5
Q ss_pred CCCCCCCCCCeeeccccccccc
Q 017047 333 PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 333 ~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+.+..+.+|+.||+++|.|+.+
T Consensus 446 Pe~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 446 PELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred hhhhhcCcceEEecccchhhhh
Confidence 8999999999999999999865
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.27 E-value=8.8e-08 Score=98.04 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=68.2
Q ss_pred cccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC-CCC
Q 017047 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL-SFN 328 (378)
Q Consensus 252 ~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL-S~N 328 (378)
...|.++.++..+|... +.+.+.|+|..|+|+.|++..|..++.|+.|||++|+|+.| .+|.+|.+|..|-| ++|
T Consensus 49 ~~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 44556666777777532 23456677777777777777777777777777777777777 56777777655444 347
Q ss_pred CCC-C--CCCCCCCCCCeeeccccccccc
Q 017047 329 DFK-G--PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 329 ~Ls-~--~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+ + ..|++|..|+.|.+.-|+|..+
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 777 2 5666676777776666666644
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.23 E-value=4.5e-07 Score=84.96 Aligned_cols=83 Identities=27% Similarity=0.306 Sum_probs=39.1
Q ss_pred cCCCcceEEecCCcCCccC----ccccCCCCCccEEEcCCCCCCCc------ccCCCCCCCcEEeCCCCCCCC---CC--
Q 017047 270 KAGDDVRLDLRGHRVRSLI----ASGLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFKG---PG-- 334 (378)
Q Consensus 270 KlssL~~LDLSgN~LssL~----~s~f~lL~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdLS~N~Ls~---~~-- 334 (378)
.+..|+.|+|++|.|..-. ...+..+++|+.|+|++|.|... ..+..+++|++|+|++|.|+. ..
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 3345555666665555210 00122224566666666655432 233445556666666665551 00
Q ss_pred ---CCCCCCCCeeeccccccc
Q 017047 335 ---FEPLENCKALQFCSNCIL 352 (378)
Q Consensus 335 ---f~~L~nLk~LdLsnNrIs 352 (378)
...+..|+.|++.+|.|+
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHhccCCCceEEEccCCCCC
Confidence 012345556666665554
No 30
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.18 E-value=1.1e-06 Score=83.46 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=47.0
Q ss_pred cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCC-CCCCcEEeCCC
Q 017047 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEI-LTRVKVLDLSF 327 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~-LtnLq~LdLS~ 327 (378)
+..-.++|+.++..+-.+..-......+||+.|.|..+. .|..++.|..|+|.+|+|+.| +.+.. +++|..|.|.+
T Consensus 20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccccchhhccccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 344444555544433332222223444555555555444 244445555555555555555 44432 23455555555
Q ss_pred CCCC-C---CCCCCCCCCCeeeccccccc
Q 017047 328 NDFK-G---PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 328 N~Ls-~---~~f~~L~nLk~LdLsnNrIs 352 (378)
|.|. + ..+..|++|++|.+.+|.++
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchh
Confidence 5555 1 33334445555555555544
No 31
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.16 E-value=2.4e-06 Score=81.28 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=81.5
Q ss_pred ccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeCCC
Q 017047 251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDLSF 327 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdLS~ 327 (378)
.-+.|++||.+..++.. ..+..|.+|+|.+|+|+.|.+.....+++|..|.|.+|.|..+ ..+..|+.|++|.|-+
T Consensus 44 ~d~iDLtdNdl~~l~~l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNL-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcccC-CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 34567889988877653 3466799999999999999987777789999999999999887 5678899999999999
Q ss_pred CCCCC------CCCCCCCCCCeeecccc
Q 017047 328 NDFKG------PGFEPLENCKALQFCSN 349 (378)
Q Consensus 328 N~Ls~------~~f~~L~nLk~LdLsnN 349 (378)
|.++. .-+..+++|+.||+..-
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhh
Confidence 99983 56778889999988763
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.16 E-value=3.3e-06 Score=92.41 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=54.4
Q ss_pred cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcc-cCCCCCCCcEEeCCCC
Q 017047 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE-GIEILTRVKVLDLSFN 328 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~-~f~~LtnLq~LdLS~N 328 (378)
+..++++.+|+|..+|.... ..|+.|+|++|+|..++... ..+|+.|+|++|+|..++ .+. .+|+.|+|++|
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l---~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERL---PSALQSLDLFHNKISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhH---hCCCCEEECcCCccCccccccC--CCCcEEECCCC
Confidence 44555666666666665332 24666666666666655422 235666777766666652 232 46677777777
Q ss_pred CCCC-C-CCCCCCCCCeeeccccccccc
Q 017047 329 DFKG-P-GFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 329 ~Ls~-~-~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+. + .+. ..|+.|++.+|.|..+
T Consensus 294 ~Lt~LP~~lp--~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 294 SIRTLPAHLP--SGITHLNVQSNSLTAL 319 (754)
T ss_pred ccccCcccch--hhHHHHHhcCCccccC
Confidence 6662 1 121 3566666777766543
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.08 E-value=6.7e-07 Score=83.83 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=46.7
Q ss_pred CCcceEEecCCcCCccC----ccccCCCCCccEEEcCCCCCCCc------ccCCCCCCCcEEeCCCCCCCC-------CC
Q 017047 272 GDDVRLDLRGHRVRSLI----ASGLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFKG-------PG 334 (378)
Q Consensus 272 ssL~~LDLSgN~LssL~----~s~f~lL~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdLS~N~Ls~-------~~ 334 (378)
.+|+.|+|++|.|..-. ...+..+..|+.|+|.+|.|..- ..+..+++|+.|+|++|.|.. ..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 45666666666666211 11233345666666666666521 234445567777777776651 23
Q ss_pred CCCCCCCCeeecccccccc
Q 017047 335 FEPLENCKALQFCSNCILL 353 (378)
Q Consensus 335 f~~L~nLk~LdLsnNrIs~ 353 (378)
+..+.+|+.|++.+|.|..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred hcccCCCCEEecCCCcCch
Confidence 4556667777777776664
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.06 E-value=4.1e-07 Score=96.49 Aligned_cols=121 Identities=21% Similarity=0.186 Sum_probs=97.2
Q ss_pred CCCCcccccccccchhccccc---cccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCC
Q 017047 231 RNGSLSSSLDRSSNLSGQRRA---GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM 307 (378)
Q Consensus 231 ~~~~l~~~l~rL~sL~~~~~~---~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~Nk 307 (378)
..-.+....++|+.|+..-.. ..+++.+|++..+|..+.-+..|..||.++|+|..++.. ++.+..|+.|.+..|+
T Consensus 122 ~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 122 ALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNH 200 (722)
T ss_pred HHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhh
Confidence 334455556666666665443 345678999999999888777899999999999999875 4556889999999999
Q ss_pred CCCc-ccCCCCCCCcEEeCCCCCCC-C-CCCCCCCCCCeeecccccccc
Q 017047 308 LSTL-EGIEILTRVKVLDLSFNDFK-G-PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 308 Ls~L-~~f~~LtnLq~LdLS~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~ 353 (378)
+..+ +.+..| .|..||+++|+|. + .+|.+|.+|++|.|.+|.|..
T Consensus 201 l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 201 LEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 9888 667744 5999999999999 5 789999999999999999863
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.03 E-value=8.6e-06 Score=89.21 Aligned_cols=96 Identities=20% Similarity=0.192 Sum_probs=71.1
Q ss_pred cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCC
Q 017047 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFN 328 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N 328 (378)
....+++.+|+|..+|.... .+|+.|+|++|+|..++... ..+|+.|+|++|.|..+ ..+ ..+|+.|+|++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERL--PSALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhH--hCCCCEEECcCC
Confidence 45667778888888886544 46888888888888876432 24688888888888877 333 257999999999
Q ss_pred CCCC--CCCCCCCCCCeeeccccccccc
Q 017047 329 DFKG--PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 329 ~Ls~--~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+. ..+. .+|+.|++++|+|+.+
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDNSIRTL 298 (754)
T ss_pred ccCccccccC--CCCcEEECCCCccccC
Confidence 9983 3333 5899999999998854
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.93 E-value=7.4e-06 Score=80.61 Aligned_cols=101 Identities=26% Similarity=0.247 Sum_probs=77.3
Q ss_pred ccccccccCCCceeecCcccccCC-CcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccC-CCCCCCcEEeCC
Q 017047 249 RRAGTPQSKDSRFIVLPQVEIKAG-DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGI-EILTRVKVLDLS 326 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~Kls-sL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f-~~LtnLq~LdLS 326 (378)
.....+++.+|.+..+|....... +|+.||+++|.|..++. .+..+++|+.|++.+|+|..++.. +.+.+|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhh-hhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 456667778888888888777774 88888888888888852 256678888888888888888444 488888888888
Q ss_pred CCCCC-CCCC-CCCCCCCeeeccccc
Q 017047 327 FNDFK-GPGF-EPLENCKALQFCSNC 350 (378)
Q Consensus 327 ~N~Ls-~~~f-~~L~nLk~LdLsnNr 350 (378)
+|+|. .+.. ..+.+|+.|.+.+|.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCc
Confidence 88888 4333 455668888888884
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.92 E-value=4.4e-06 Score=82.18 Aligned_cols=108 Identities=21% Similarity=0.224 Sum_probs=53.6
Q ss_pred hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCC-CCcccCCCCCCCcEEe
Q 017047 246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNML-STLEGIEILTRVKVLD 324 (378)
Q Consensus 246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkL-s~L~~f~~LtnLq~Ld 324 (378)
....+...+++.+|.+..+|....++..|..|++++|+|+.++... ..+..|++|++.+|.+ .-+..+..+.+|..|+
T Consensus 160 ~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhh-hhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence 3344445555566666666655545556666666666666665421 1223455555555532 2223344444444444
Q ss_pred CCCCCCCC--CCCCCCCCCCeeeccccccccc
Q 017047 325 LSFNDFKG--PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 325 LS~N~Ls~--~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+.+|++.. ..+..+.+|+.|++.+|.|+.+
T Consensus 239 l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 239 LSNNKLEDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred cCCceeeeccchhccccccceecccccccccc
Confidence 44444442 3344444455555555555444
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.2e-05 Score=57.94 Aligned_cols=36 Identities=33% Similarity=0.411 Sum_probs=14.7
Q ss_pred cceEEecCCcCCccCccccCCCCCccEEEcCCCCCCC
Q 017047 274 DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST 310 (378)
Q Consensus 274 L~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~ 310 (378)
|++|+|++|+|+.+++ .+..|++|+.|+|++|+|+.
T Consensus 3 L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 3 LEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp -SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred ceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence 4444444444444443 13334444444444444443
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.86 E-value=7.3e-07 Score=94.66 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=63.8
Q ss_pred cccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCC
Q 017047 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDF 330 (378)
Q Consensus 252 ~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~L 330 (378)
..+++++|.|..+|..++.+..|.+|||+.|+|..++...+. |+ |++|.+.+|+|+.+ +.++.+..|..||.+.|+|
T Consensus 101 e~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~-lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 101 ESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCD-LP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred HHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhc-Cc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh
Confidence 345567788888888888888899999999999998876444 35 99999999999888 7788888888888888887
Q ss_pred C
Q 017047 331 K 331 (378)
Q Consensus 331 s 331 (378)
.
T Consensus 179 ~ 179 (722)
T KOG0532|consen 179 Q 179 (722)
T ss_pred h
Confidence 7
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=2.5e-05 Score=56.37 Aligned_cols=36 Identities=31% Similarity=0.390 Sum_probs=31.6
Q ss_pred CCccEEEcCCCCCCCccc-CCCCCCCcEEeCCCCCCC
Q 017047 296 PNLEFVYLRDNMLSTLEG-IEILTRVKVLDLSFNDFK 331 (378)
Q Consensus 296 ~nLe~LdLs~NkLs~L~~-f~~LtnLq~LdLS~N~Ls 331 (378)
++|++|+|.+|+|+.++. |..|++|++|||++|+|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 479999999999999965 999999999999999987
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=1.5e-06 Score=79.03 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=80.9
Q ss_pred cccCCCceeecCcccc---cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCC
Q 017047 254 PQSKDSRFIVLPQVEI---KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFND 329 (378)
Q Consensus 254 ~dlrdnrfs~LP~l~~---KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~ 329 (378)
+|+..|.+..+++... +..+|..++|++|.|..+++.+....+.++.|+|.+|.|..+ ..|..++.|+.|++++|.
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc
Confidence 4556676776776654 566788889999999998887666667899999999999998 668999999999999999
Q ss_pred CCC--CCCCCCCCCCeeeccccccccc
Q 017047 330 FKG--PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 330 Ls~--~~f~~L~nLk~LdLsnNrIs~i 354 (378)
|.. .-|..|.+|.+|+..+|.+..+
T Consensus 112 l~~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 112 LNAEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred cccchHHHHHHHhHHHhcCCCCccccC
Confidence 983 4556688899999988887644
No 42
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.59 E-value=0.00013 Score=82.80 Aligned_cols=99 Identities=23% Similarity=0.238 Sum_probs=51.8
Q ss_pred ccccccccCCCceeecCcccccCCCcceEEecCCc-CCccCccccCCCCCccEEEcCCCC-CCCc-ccCCCCCCCcEEeC
Q 017047 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHR-VRSLIASGLNLQPNLEFVYLRDNM-LSTL-EGIEILTRVKVLDL 325 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~-LssL~~s~f~lL~nLe~LdLs~Nk-Ls~L-~~f~~LtnLq~LdL 325 (378)
.+...+++.+|++..+|.....+.+|+.|+|++|. +..++. +..+++|+.|+|.+|. +..+ ..+..|.+|+.|+|
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 34444555555555555554455556666665532 444442 4444566666665543 3334 44556666666666
Q ss_pred CCC-CCC-CCCCCCCCCCCeeecccc
Q 017047 326 SFN-DFK-GPGFEPLENCKALQFCSN 349 (378)
Q Consensus 326 S~N-~Ls-~~~f~~L~nLk~LdLsnN 349 (378)
++| .++ .+....+.+|+.|++.+|
T Consensus 689 ~~c~~L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 689 SRCENLEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCCcCccCCcCCCCCCCEEeCCCC
Confidence 653 333 222225666666666665
No 43
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.59 E-value=0.0002 Score=81.42 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=66.6
Q ss_pred cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCC-CCCcccCCCCCCCcEEeCCCC
Q 017047 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM-LSTLEGIEILTRVKVLDLSFN 328 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~Nk-Ls~L~~f~~LtnLq~LdLS~N 328 (378)
+...++..++.+..+|..+ .+.+|+.|+|.+|+|..+... +..+++|+.|+|++|. +..++.+..+++|+.|+|++|
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence 3445555666677777643 456778888888888777543 4556778888887653 555677777788888888776
Q ss_pred CC-C-C-CCCCCCCCCCeeecccc
Q 017047 329 DF-K-G-PGFEPLENCKALQFCSN 349 (378)
Q Consensus 329 ~L-s-~-~~f~~L~nLk~LdLsnN 349 (378)
.. . . ..|..|.+|+.|++.+|
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCC
Confidence 43 3 2 56677777888887764
No 44
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=8.2e-06 Score=81.18 Aligned_cols=94 Identities=23% Similarity=0.184 Sum_probs=72.5
Q ss_pred ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeC
Q 017047 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDL 325 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdL 325 (378)
++..-+.++++++..|--+ .+...|..|.|+-|.|+.|.+ |..|..|++|||+.|.|..+ ..+.+|++|+.|+|
T Consensus 19 ~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHHH-HhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3444556777877766532 356778999999999999986 77889999999999999888 55688999999999
Q ss_pred CCCCCCC--------CCCCCCCCCCeee
Q 017047 326 SFNDFKG--------PGFEPLENCKALQ 345 (378)
Q Consensus 326 S~N~Ls~--------~~f~~L~nLk~Ld 345 (378)
..|-..+ ..+..|+||+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998773 2344566776664
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00011 Score=76.44 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=46.5
Q ss_pred CCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeCCCCCCC-C--CC------CCCC
Q 017047 271 AGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDLSFNDFK-G--PG------FEPL 338 (378)
Q Consensus 271 lssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdLS~N~Ls-~--~~------f~~L 338 (378)
+..|..|+|.+|..-.+....+..+..|+.|||++|.|-.. ..++.|++|..|+++.+.|. . .+ ...+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 34555666666643222222233344566666666666544 34556666666666666666 1 11 2345
Q ss_pred CCCCeeeccccccccccc
Q 017047 339 ENCKALQFCSNCILLETK 356 (378)
Q Consensus 339 ~nLk~LdLsnNrIs~i~~ 356 (378)
.+|++|++..|.|..|..
T Consensus 301 ~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 301 PKLEYLNISENNIRDWRS 318 (505)
T ss_pred ccceeeecccCccccccc
Confidence 566666666666655543
No 46
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.08 E-value=0.00029 Score=68.81 Aligned_cols=86 Identities=24% Similarity=0.179 Sum_probs=58.9
Q ss_pred ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCC---c-ccCCCCCCCcEEeCCCCCCC-C---CCCCCC
Q 017047 267 VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST---L-EGIEILTRVKVLDLSFNDFK-G---PGFEPL 338 (378)
Q Consensus 267 l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~---L-~~f~~LtnLq~LdLS~N~Ls-~---~~f~~L 338 (378)
+......|..|.+.+-.++.+. .|-.+++|+.|.|++|.+.. + .-...+++|++|+|++|+|. . ..+..|
T Consensus 38 l~d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 3345566777777777777776 36667888888888884432 2 23345688888888888888 3 445566
Q ss_pred CCCCeeeccccccccc
Q 017047 339 ENCKALQFCSNCILLE 354 (378)
Q Consensus 339 ~nLk~LdLsnNrIs~i 354 (378)
.+|..|++.+|..+..
T Consensus 116 ~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNL 131 (260)
T ss_pred cchhhhhcccCCcccc
Confidence 6777788888776643
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00034 Score=68.30 Aligned_cols=77 Identities=27% Similarity=0.285 Sum_probs=58.3
Q ss_pred cCCCcceEEecCCcCC---ccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeCCCCCCCC------CCCCC
Q 017047 270 KAGDDVRLDLRGHRVR---SLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDLSFNDFKG------PGFEP 337 (378)
Q Consensus 270 KlssL~~LDLSgN~Ls---sL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdLS~N~Ls~------~~f~~ 337 (378)
++++|+.|+|+.|.++ +++.. ...+++|++|+|++|+|.-+ +.+..+.+|..|||.+|..+. ..|.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 3567999999999444 23322 23459999999999999865 778888999999999998873 45667
Q ss_pred CCCCCeeecc
Q 017047 338 LENCKALQFC 347 (378)
Q Consensus 338 L~nLk~LdLs 347 (378)
|.+|++|+-.
T Consensus 142 l~~L~~LD~~ 151 (260)
T KOG2739|consen 142 LPSLKYLDGC 151 (260)
T ss_pred hhhhcccccc
Confidence 7777777643
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.88 E-value=7.6e-05 Score=68.10 Aligned_cols=88 Identities=23% Similarity=0.186 Sum_probs=76.1
Q ss_pred cchhccccccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCC
Q 017047 243 SNLSGQRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRV 320 (378)
Q Consensus 243 ~sL~~~~~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnL 320 (378)
..|.......+.++.+|.|..||..+. +...++.|+|.+|+|..+|.. +..++.|+.|+++.|.|... ..|..|.+|
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKL 125 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhH
Confidence 345555667778899999999998775 677899999999999999987 77779999999999999887 667779999
Q ss_pred cEEeCCCCCCC
Q 017047 321 KVLDLSFNDFK 331 (378)
Q Consensus 321 q~LdLS~N~Ls 331 (378)
..||..+|.+.
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 99999999987
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.80 E-value=0.00022 Score=72.42 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=49.2
Q ss_pred cccccccCCCceee--cC---cccccCCCcceEEecCCcCCccCccc-------------cCCCCCccEEEcCCCCCCCc
Q 017047 250 RAGTPQSKDSRFIV--LP---QVEIKAGDDVRLDLRGHRVRSLIASG-------------LNLQPNLEFVYLRDNMLSTL 311 (378)
Q Consensus 250 ~~~T~dlrdnrfs~--LP---~l~~KlssL~~LDLSgN~LssL~~s~-------------f~lL~nLe~LdLs~NkLs~L 311 (378)
+...+++.||-|.. ++ .++..+.+|++|.|.+|.|...-... ....+.|+++....|++..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 55666777766653 11 12234566666666666554221110 12234455555555555322
Q ss_pred ------ccCCCCCCCcEEeCCCCCCC--C-----CCCCCCCCCCeeeccccccccc
Q 017047 312 ------EGIEILTRVKVLDLSFNDFK--G-----PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 312 ------~~f~~LtnLq~LdLS~N~Ls--~-----~~f~~L~nLk~LdLsnNrIs~i 354 (378)
..|..++.|+.+.+.+|.|. + ..|.++++|+.|||.+|-|+..
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence 23444444444455444444 1 2344444555555555544433
No 50
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=5e-05 Score=75.71 Aligned_cols=78 Identities=23% Similarity=0.174 Sum_probs=67.3
Q ss_pred CcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCC-C---CCCCCCCCCCeeeccc
Q 017047 273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK-G---PGFEPLENCKALQFCS 348 (378)
Q Consensus 273 sL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls-~---~~f~~L~nLk~LdLsn 348 (378)
+.+.|++.|+.|..|. ....++.|++|.|+-|+|+.+..|..|++|+.|||..|.|. + .-+.+|++|+.|.|..
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 4567999999999886 35667999999999999999999999999999999999999 3 3456788899999999
Q ss_pred cccc
Q 017047 349 NCIL 352 (378)
Q Consensus 349 NrIs 352 (378)
|.-.
T Consensus 98 NPCc 101 (388)
T KOG2123|consen 98 NPCC 101 (388)
T ss_pred CCcc
Confidence 8643
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.00056 Score=71.31 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=68.2
Q ss_pred CCCcceEEecCCcCCccCccc-cCCCCCccEEEcCCCCCCCc--ccC------CCCCCCcEEeCCCCCCCC----CCCCC
Q 017047 271 AGDDVRLDLRGHRVRSLIASG-LNLQPNLEFVYLRDNMLSTL--EGI------EILTRVKVLDLSFNDFKG----PGFEP 337 (378)
Q Consensus 271 lssL~~LDLSgN~LssL~~s~-f~lL~nLe~LdLs~NkLs~L--~~f------~~LtnLq~LdLS~N~Ls~----~~f~~ 337 (378)
+..|+.|||++|+|-..+... ...++.|..|.+..|.|..+ +.. ..+..|++|++..|+|.. ..+..
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT 324 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc
Confidence 456899999999998877432 35578999999999999888 333 467899999999999962 56666
Q ss_pred CCCCCeeeccccccccccc
Q 017047 338 LENCKALQFCSNCILLETK 356 (378)
Q Consensus 338 L~nLk~LdLsnNrIs~i~~ 356 (378)
+.+|+.|.+..|.|+....
T Consensus 325 l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNKETD 343 (505)
T ss_pred cchhhhhhccccccccccc
Confidence 7788888989999875443
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.67 E-value=0.00055 Score=76.55 Aligned_cols=79 Identities=20% Similarity=0.211 Sum_probs=49.7
Q ss_pred CCCcceEEecCCc-CCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCC--C-CCCCCCCCCCeee
Q 017047 271 AGDDVRLDLRGHR-VRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFK--G-PGFEPLENCKALQ 345 (378)
Q Consensus 271 lssL~~LDLSgN~-LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls--~-~~f~~L~nLk~Ld 345 (378)
+..|+.|||++|. +..+|. .+..+-+|++|+|++..|..+ .+|.+|..|.+|||.++... . ..+..|.+|++|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 4457777777654 344543 345556777777777777777 66777777777777766543 2 2333466777776
Q ss_pred ccccc
Q 017047 346 FCSNC 350 (378)
Q Consensus 346 LsnNr 350 (378)
+..-.
T Consensus 649 l~~s~ 653 (889)
T KOG4658|consen 649 LPRSA 653 (889)
T ss_pred eeccc
Confidence 65544
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.57 E-value=0.0011 Score=67.43 Aligned_cols=87 Identities=21% Similarity=0.193 Sum_probs=44.1
Q ss_pred CCcceEEecCCcCCccCcc----ccCCCCCccEEEcCCCCCCC--c----ccCCCCCCCcEEeCCCCCCCC-------CC
Q 017047 272 GDDVRLDLRGHRVRSLIAS----GLNLQPNLEFVYLRDNMLST--L----EGIEILTRVKVLDLSFNDFKG-------PG 334 (378)
Q Consensus 272 ssL~~LDLSgN~LssL~~s----~f~lL~nLe~LdLs~NkLs~--L----~~f~~LtnLq~LdLS~N~Ls~-------~~ 334 (378)
..|+.++...|++..-... .|+.++.|+.+-+..|.|.. + .+|..|++|++|||.+|-|+. ..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 3455556666655532211 23444555555555555532 1 445555556666666665551 34
Q ss_pred CCCCCCCCeeeccccccccccccc
Q 017047 335 FEPLENCKALQFCSNCILLETKLH 358 (378)
Q Consensus 335 f~~L~nLk~LdLsnNrIs~i~~L~ 358 (378)
+..|++|++|++.++.|....-+.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred hcccchheeecccccccccccHHH
Confidence 455555555555555555433333
No 54
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.44 E-value=0.0011 Score=74.35 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=75.0
Q ss_pred CCCceeecCcccccCCCcceEEecCCc--CCccCccccCCCCCccEEEcCCCC-CCCc-ccCCCCCCCcEEeCCCCCCC-
Q 017047 257 KDSRFIVLPQVEIKAGDDVRLDLRGHR--VRSLIASGLNLQPNLEFVYLRDNM-LSTL-EGIEILTRVKVLDLSFNDFK- 331 (378)
Q Consensus 257 rdnrfs~LP~l~~KlssL~~LDLSgN~--LssL~~s~f~lL~nLe~LdLs~Nk-Ls~L-~~f~~LtnLq~LdLS~N~Ls- 331 (378)
.+|.+..++... ++.+|+.|-+.+|. +..+...+|..++.|++|||++|. +..+ ..++.|.+|++|+|++..|.
T Consensus 531 ~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~ 609 (889)
T KOG4658|consen 531 MNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH 609 (889)
T ss_pred eccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc
Confidence 344555555433 34479999999997 778887778889999999999874 5666 67889999999999999999
Q ss_pred C-CCCCCCCCCCeeeccccc
Q 017047 332 G-PGFEPLENCKALQFCSNC 350 (378)
Q Consensus 332 ~-~~f~~L~nLk~LdLsnNr 350 (378)
+ .+|.+|..|.+|++..+.
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred cchHHHHHHhhheecccccc
Confidence 3 788999999999998765
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.21 E-value=0.014 Score=48.06 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=21.9
Q ss_pred CcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCC
Q 017047 273 DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFN 328 (378)
Q Consensus 273 sL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N 328 (378)
.|+.|++.++ +..+....|..+..|+.+.+.+ .+..+ ..|..+.+|+.+++..|
T Consensus 36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence 4455555443 4444444444444455555533 33333 33444555555555443
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.0014 Score=66.08 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=61.8
Q ss_pred cCCCcceEEecCCcCCccCcc--ccCCCCCccEEEcCCCCCCCc-ccC-CCCCCCcEEeCCCCCCCC----CCCCCCCCC
Q 017047 270 KAGDDVRLDLRGHRVRSLIAS--GLNLQPNLEFVYLRDNMLSTL-EGI-EILTRVKVLDLSFNDFKG----PGFEPLENC 341 (378)
Q Consensus 270 KlssL~~LDLSgN~LssL~~s--~f~lL~nLe~LdLs~NkLs~L-~~f-~~LtnLq~LdLS~N~Ls~----~~f~~L~nL 341 (378)
++++++.|||.+|.|.....- .+.+++.|++|+|+.|.|... ..+ ..+.+|++|-|.+-.|.- ..+..|+.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 567888999999999865432 345679999999999998765 444 467889999998888772 445666677
Q ss_pred Ceeeccccccc
Q 017047 342 KALQFCSNCIL 352 (378)
Q Consensus 342 k~LdLsnNrIs 352 (378)
++|+++.|.+.
T Consensus 149 telHmS~N~~r 159 (418)
T KOG2982|consen 149 TELHMSDNSLR 159 (418)
T ss_pred hhhhhccchhh
Confidence 77777777544
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.0032 Score=63.68 Aligned_cols=123 Identities=19% Similarity=0.059 Sum_probs=79.5
Q ss_pred cccccCCCceeecCccc---ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeC
Q 017047 252 GTPQSKDSRFIVLPQVE---IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDL 325 (378)
Q Consensus 252 ~T~dlrdnrfs~LP~l~---~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdL 325 (378)
.-+|+.+|.|..-.+.. ..++.|+.|+|++|.|.......-..+.+|+.|-|.+..|..- ..+..++.++.|++
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM 153 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence 44677788776544432 3678899999999999876543312358899999988887543 55688899999999
Q ss_pred CCCCCC---C--CCCCCCC-CCCeeecccccccccc-----------------------ccchhhccCCCCchhHhhh
Q 017047 326 SFNDFK---G--PGFEPLE-NCKALQFCSNCILLET-----------------------KLHLLEASQSFPIWSFSLL 374 (378)
Q Consensus 326 S~N~Ls---~--~~f~~L~-nLk~LdLsnNrIs~i~-----------------------~L~lL~~l~~FPiws~~~L 374 (378)
+.|.+. . .+...+. .+..|++..|.+..|. .+.-+.....||.|.+..|
T Consensus 154 S~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL 231 (418)
T KOG2982|consen 154 SDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNL 231 (418)
T ss_pred ccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhh
Confidence 999554 2 3333333 4455555554433221 1123345568999987655
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.69 E-value=0.0075 Score=66.10 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=58.0
Q ss_pred cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeCCCCCCCC---------CCCCC
Q 017047 270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDLSFNDFKG---------PGFEP 337 (378)
Q Consensus 270 KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdLS~N~Ls~---------~~f~~ 337 (378)
.+.+|..||+++-+|+.+. ++..+.+|+.|.+++=.|..- ..+.+|++|++||+|...... .....
T Consensus 171 sFpNL~sLDIS~TnI~nl~--GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNLS--GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred ccCccceeecCCCCccCcH--HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 3455777888888888773 567778888888877666542 567788888888888665441 34455
Q ss_pred CCCCCeeeccccccc
Q 017047 338 LENCKALQFCSNCIL 352 (378)
Q Consensus 338 L~nLk~LdLsnNrIs 352 (378)
|++|+.||.+++.+.
T Consensus 249 LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 249 LPELRFLDCSGTDIN 263 (699)
T ss_pred CccccEEecCCcchh
Confidence 788888888877765
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.16 E-value=0.074 Score=43.69 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=55.1
Q ss_pred cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC--CCCCCCCCCCCeee
Q 017047 270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK--GPGFEPLENCKALQ 345 (378)
Q Consensus 270 KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls--~~~f~~L~nLk~Ld 345 (378)
.+.+|+.+.+.. .+..|....|..+..|+.+.+.++ +..+ ..|..+..|+.+++.++... ...|..+.+|+.++
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccccccc
Confidence 566899999984 799999999999889999999886 8877 67889989999999774433 26788899999999
Q ss_pred ccccccc
Q 017047 346 FCSNCIL 352 (378)
Q Consensus 346 LsnNrIs 352 (378)
+..| +.
T Consensus 88 ~~~~-~~ 93 (129)
T PF13306_consen 88 IPSN-IT 93 (129)
T ss_dssp ETTT--B
T ss_pred cCcc-cc
Confidence 9766 44
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.11 E-value=0.01 Score=65.09 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=68.8
Q ss_pred cCCCcceEEecCCcCCccC-ccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCCC----CCCCCCCCCCee
Q 017047 270 KAGDDVRLDLRGHRVRSLI-ASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFKG----PGFEPLENCKAL 344 (378)
Q Consensus 270 KlssL~~LDLSgN~LssL~-~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls~----~~f~~L~nLk~L 344 (378)
.++.|+.|.+.|-.+..-. ...+..+++|..||+++..|+.+.++..|++|++|.+.+=.|.- .++..|++|+.|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 4677899999887775443 11245679999999999999999999999999999999888872 577889999999
Q ss_pred eccccccccc
Q 017047 345 QFCSNCILLE 354 (378)
Q Consensus 345 dLsnNrIs~i 354 (378)
|++..+....
T Consensus 226 DIS~~~~~~~ 235 (699)
T KOG3665|consen 226 DISRDKNNDD 235 (699)
T ss_pred eccccccccc
Confidence 9998776533
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.87 E-value=0.015 Score=58.37 Aligned_cols=118 Identities=21% Similarity=0.218 Sum_probs=72.3
Q ss_pred chhccccccccccCCCceee-cCcc----cccCCCcceEEecCCcCCccCcccc-------------CCCCCccEEEcCC
Q 017047 244 NLSGQRRAGTPQSKDSRFIV-LPQV----EIKAGDDVRLDLRGHRVRSLIASGL-------------NLQPNLEFVYLRD 305 (378)
Q Consensus 244 sL~~~~~~~T~dlrdnrfs~-LP~l----~~KlssL~~LDLSgN~LssL~~s~f-------------~lL~nLe~LdLs~ 305 (378)
.|..-++.-+.++.||-|.. +|.. +.+.++|.+|.|.+|.+..+-..-+ ..-+.|+.++...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 34444556666777777765 3332 2356778888888888765543322 1236677888887
Q ss_pred CCCCCc------ccCCCCCCCcEEeCCCCCCC--C------CCCCCCCCCCeeeccccccccccccchhh
Q 017047 306 NMLSTL------EGIEILTRVKVLDLSFNDFK--G------PGFEPLENCKALQFCSNCILLETKLHLLE 361 (378)
Q Consensus 306 NkLs~L------~~f~~LtnLq~LdLS~N~Ls--~------~~f~~L~nLk~LdLsnNrIs~i~~L~lL~ 361 (378)
|+|..- ..|..-.+|.++-+-+|-|. + .++..+++|+.|||.+|-|+......+..
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 877543 22333357777777777776 2 34455677788888888777554433333
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.38 E-value=0.058 Score=56.33 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=34.1
Q ss_pred ccccccccCCCceeecCcccccCCCcceEEecC-CcCCccCccccCCCCCccEEEcCCC-CCCCc
Q 017047 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRDN-MLSTL 311 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSg-N~LssL~~s~f~lL~nLe~LdLs~N-kLs~L 311 (378)
++...+++.+|.+..+|.. +.+|+.|++.+ ++|..++.. + ..+|+.|+|.+| .|..+
T Consensus 52 ~~l~~L~Is~c~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVL---PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred cCCCEEEeCCCCCcccCCC---CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccc
Confidence 5566677777777777732 34577777765 555555531 2 246777777766 44433
No 63
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.05 E-value=0.0025 Score=62.60 Aligned_cols=102 Identities=16% Similarity=0.046 Sum_probs=79.3
Q ss_pred cccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCC
Q 017047 250 RAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSF 327 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~ 327 (378)
-.-|+|+.-..+..+|-.++ .....+.|||+.|++-.+-.. |..+..|..|+|+.|+|..+ ..++.+..+..+++.+
T Consensus 19 v~~tc~~s~s~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~ 97 (326)
T KOG0473|consen 19 VDETCDLSLSELSEIPVREIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK 97 (326)
T ss_pred hhcccCCCHHHhcccchhhhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc
Confidence 34566666666777775443 455677899999998877653 55567788899999999888 7888888889999999
Q ss_pred CCCCC--CCCCCCCCCCeeeccccccc
Q 017047 328 NDFKG--PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 328 N~Ls~--~~f~~L~nLk~LdLsnNrIs 352 (378)
|.++. ..++.+.+++++++-.|.|.
T Consensus 98 n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 98 NNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cchhhCCccccccCCcchhhhccCcch
Confidence 98883 67888889999998888765
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.46 E-value=0.072 Score=33.02 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=12.3
Q ss_pred cceEEecCCcCCccCcc
Q 017047 274 DVRLDLRGHRVRSLIAS 290 (378)
Q Consensus 274 L~~LDLSgN~LssL~~s 290 (378)
|++|||++|+|+.+++.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 67777777777776654
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.80 E-value=0.33 Score=50.79 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=42.1
Q ss_pred cCCCcceEEecCCcCCccCccccCCCCCccEEEcCC-CCCCCcccCCCCCCCcEEeCCCC-CCC
Q 017047 270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRD-NMLSTLEGIEILTRVKVLDLSFN-DFK 331 (378)
Q Consensus 270 KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~-NkLs~L~~f~~LtnLq~LdLS~N-~Ls 331 (378)
.+.++..|++++|.|..++. ...+|+.|.+.+ +.|..+++.. ..+|+.|+|++| +|.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEIS 108 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccc
Confidence 35679999999999999982 345799999987 5565554321 358889999887 544
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.72 E-value=0.1 Score=32.35 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=9.0
Q ss_pred CccEEEcCCCCCCCc
Q 017047 297 NLEFVYLRDNMLSTL 311 (378)
Q Consensus 297 nLe~LdLs~NkLs~L 311 (378)
+|++|||++|+|+.+
T Consensus 1 ~L~~Ldls~n~l~~i 15 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSI 15 (22)
T ss_dssp TESEEEETSSEESEE
T ss_pred CccEEECCCCcCEeC
Confidence 356666666666655
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.74 E-value=0.3 Score=30.86 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=13.0
Q ss_pred CCcceEEecCCcCCccCcccc
Q 017047 272 GDDVRLDLRGHRVRSLIASGL 292 (378)
Q Consensus 272 ssL~~LDLSgN~LssL~~s~f 292 (378)
.+|+.|+|.+|+|+.++...|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 346666666666666665544
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.74 E-value=0.3 Score=30.86 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=13.0
Q ss_pred CCcceEEecCCcCCccCcccc
Q 017047 272 GDDVRLDLRGHRVRSLIASGL 292 (378)
Q Consensus 272 ssL~~LDLSgN~LssL~~s~f 292 (378)
.+|+.|+|.+|+|+.++...|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 346666666666666665544
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.16 E-value=0.39 Score=48.59 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=67.2
Q ss_pred ecCcccccCCCcceEEecCCcCCccCcc----ccCCCCCccEEEcCCCCCCCc--c----c---------CCCCCCCcEE
Q 017047 263 VLPQVEIKAGDDVRLDLRGHRVRSLIAS----GLNLQPNLEFVYLRDNMLSTL--E----G---------IEILTRVKVL 323 (378)
Q Consensus 263 ~LP~l~~KlssL~~LDLSgN~LssL~~s----~f~lL~nLe~LdLs~NkLs~L--~----~---------f~~LtnLq~L 323 (378)
.+-+...+|..|+..||+.|.|..-.+. .+.....|.+|+|.+|.+.-+ . + ...-+.|+++
T Consensus 83 ~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 83 MLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 3444557899999999999999753332 234457899999999998655 1 1 2345689999
Q ss_pred eCCCCCCC-C------CCCCCCCCCCeeeccccccc
Q 017047 324 DLSFNDFK-G------PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 324 dLS~N~Ls-~------~~f~~L~nLk~LdLsnNrIs 352 (378)
+...|+|. + ..|....+|+.+.+..|.|.
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcC
Confidence 99999998 4 23444468999999999986
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.10 E-value=0.36 Score=28.50 Aligned_cols=14 Identities=43% Similarity=0.487 Sum_probs=5.9
Q ss_pred cceEEecCCcCCcc
Q 017047 274 DVRLDLRGHRVRSL 287 (378)
Q Consensus 274 L~~LDLSgN~LssL 287 (378)
|+.|+|++|+|+.+
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 55555555555544
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.34 E-value=0.03 Score=55.32 Aligned_cols=80 Identities=16% Similarity=0.037 Sum_probs=65.1
Q ss_pred ccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCC
Q 017047 251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFND 329 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~ 329 (378)
...+|+..|++..+-..+..++.|.+|||+.|+|.-++.. +..+..+..+++++|.++.+ -.++.+++++++++-.|.
T Consensus 44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred eeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 4456666666666665555667788999999999988864 55557889999999999988 788999999999999999
Q ss_pred CC
Q 017047 330 FK 331 (378)
Q Consensus 330 Ls 331 (378)
|.
T Consensus 123 ~~ 124 (326)
T KOG0473|consen 123 FF 124 (326)
T ss_pred ch
Confidence 88
No 72
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.54 E-value=0.8 Score=30.15 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=9.0
Q ss_pred CCccEEEcCCCCCCCccc
Q 017047 296 PNLEFVYLRDNMLSTLEG 313 (378)
Q Consensus 296 ~nLe~LdLs~NkLs~L~~ 313 (378)
.+|+.|+|++|+|..+++
T Consensus 2 ~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 2 TNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CccCEEECCCCccceecC
Confidence 345555555555544433
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=84.40 E-value=0.65 Score=27.38 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=6.9
Q ss_pred CccEEEcCCCCCCCc
Q 017047 297 NLEFVYLRDNMLSTL 311 (378)
Q Consensus 297 nLe~LdLs~NkLs~L 311 (378)
+|++|+|++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 466666666665543
No 74
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.19 E-value=1.1 Score=29.54 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=10.1
Q ss_pred CCCCeeecccccccccccc
Q 017047 339 ENCKALQFCSNCILLETKL 357 (378)
Q Consensus 339 ~nLk~LdLsnNrIs~i~~L 357 (378)
.+|+.|++.+|+|..++++
T Consensus 2 ~~L~~L~L~~NkI~~IEnL 20 (26)
T smart00365 2 TNLEELDLSQNKIKKIENL 20 (26)
T ss_pred CccCEEECCCCccceecCc
Confidence 4555555555555555443
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=79.55 E-value=1.6 Score=27.47 Aligned_cols=16 Identities=50% Similarity=0.654 Sum_probs=10.2
Q ss_pred CCccEEEcCCCCCCCc
Q 017047 296 PNLEFVYLRDNMLSTL 311 (378)
Q Consensus 296 ~nLe~LdLs~NkLs~L 311 (378)
++|+.|+|.+|+|..+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666665
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=79.55 E-value=1.6 Score=27.47 Aligned_cols=16 Identities=50% Similarity=0.654 Sum_probs=10.2
Q ss_pred CCccEEEcCCCCCCCc
Q 017047 296 PNLEFVYLRDNMLSTL 311 (378)
Q Consensus 296 ~nLe~LdLs~NkLs~L 311 (378)
++|+.|+|.+|+|..+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666665
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.26 E-value=0.49 Score=45.60 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=53.6
Q ss_pred ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCC---cccCC-CCCCCcEEeCCCC-CCC--C-CC
Q 017047 263 VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST---LEGIE-ILTRVKVLDLSFN-DFK--G-PG 334 (378)
Q Consensus 263 ~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~---L~~f~-~LtnLq~LdLS~N-~Ls--~-~~ 334 (378)
.+|.....-..++.+|-++..|..+--..+..+..|+.|.|.+++--. ++.++ ..++|+.|+|++| +|+ + ..
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 444432222346678888877775544456666777777776664211 12232 4578999999955 677 2 66
Q ss_pred CCCCCCCCeeeccc
Q 017047 335 FEPLENCKALQFCS 348 (378)
Q Consensus 335 f~~L~nLk~LdLsn 348 (378)
+..|++|+.|+|.+
T Consensus 172 L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhhhhHHHHhcC
Confidence 77777888877765
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.18 E-value=1.4 Score=47.73 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=14.2
Q ss_pred CCccEEEcCCCCCCCcccCC----CCCCCcEEeCCCC
Q 017047 296 PNLEFVYLRDNMLSTLEGIE----ILTRVKVLDLSFN 328 (378)
Q Consensus 296 ~nLe~LdLs~NkLs~L~~f~----~LtnLq~LdLS~N 328 (378)
+.+..+.|++|+|..|.++. ..++|..|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 33444444444444442221 2234444445444
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=71.45 E-value=2.1 Score=26.57 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=5.6
Q ss_pred CCCcEEeCCCCCCC
Q 017047 318 TRVKVLDLSFNDFK 331 (378)
Q Consensus 318 tnLq~LdLS~N~Ls 331 (378)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444555544443
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.40 E-value=2.9 Score=45.42 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=47.0
Q ss_pred ccCCCcceEEecCCcCCccCccc--cCCCCCccEEEcCCC--CCCCcccCCCCC--CCcEEeCCCCCCC
Q 017047 269 IKAGDDVRLDLRGHRVRSLIASG--LNLQPNLEFVYLRDN--MLSTLEGIEILT--RVKVLDLSFNDFK 331 (378)
Q Consensus 269 ~KlssL~~LDLSgN~LssL~~s~--f~lL~nLe~LdLs~N--kLs~L~~f~~Lt--nLq~LdLS~N~Ls 331 (378)
.+...+..|.|++|+|..|.... -...++|..|+|++| .+.....+..+. .|++|.|.+|.|.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 35667888999999999887431 123489999999999 555554554443 4799999999987
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=61.74 E-value=3.4 Score=40.81 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=47.4
Q ss_pred ccCCCcceEEecCC--cCCccC---ccccCCCCCccEEEcCCCC-CCCc--ccCC-CCCCCcEEeCCCCC-CCC----CC
Q 017047 269 IKAGDDVRLDLRGH--RVRSLI---ASGLNLQPNLEFVYLRDNM-LSTL--EGIE-ILTRVKVLDLSFND-FKG----PG 334 (378)
Q Consensus 269 ~KlssL~~LDLSgN--~LssL~---~s~f~lL~nLe~LdLs~Nk-Ls~L--~~f~-~LtnLq~LdLS~N~-Ls~----~~ 334 (378)
..+.+|+.|++.++ .+.... ......+.+|+.|+|.+.. ++.. ..+. .|++|+.|.+.+.. ++. ..
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 35567788888763 111111 1123345777888887776 4433 3332 37788888766555 552 33
Q ss_pred CCCCCCCCeeecccccc
Q 017047 335 FEPLENCKALQFCSNCI 351 (378)
Q Consensus 335 f~~L~nLk~LdLsnNrI 351 (378)
...+.+|++|++..+..
T Consensus 291 ~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhcCcccEEeeecCcc
Confidence 45566688888775554
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.68 E-value=8.2 Score=25.18 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=8.6
Q ss_pred CCCcEEeCCCCCCC
Q 017047 318 TRVKVLDLSFNDFK 331 (378)
Q Consensus 318 tnLq~LdLS~N~Ls 331 (378)
+.|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666665
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.55 E-value=7 Score=26.01 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=10.5
Q ss_pred CcceEEecCCcCCccCc
Q 017047 273 DDVRLDLRGHRVRSLIA 289 (378)
Q Consensus 273 sL~~LDLSgN~LssL~~ 289 (378)
.|+.|++++|+|+.++.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 35666666666666664
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=51.76 E-value=0.82 Score=48.32 Aligned_cols=83 Identities=22% Similarity=0.180 Sum_probs=47.3
Q ss_pred CCCcceEEecCCcCCccCcc----ccCCCCC-ccEEEcCCCCCCCc------ccCCCC-CCCcEEeCCCCCCCC------
Q 017047 271 AGDDVRLDLRGHRVRSLIAS----GLNLQPN-LEFVYLRDNMLSTL------EGIEIL-TRVKVLDLSFNDFKG------ 332 (378)
Q Consensus 271 lssL~~LDLSgN~LssL~~s----~f~lL~n-Le~LdLs~NkLs~L------~~f~~L-tnLq~LdLS~N~Ls~------ 332 (378)
...+++|+|.+|.++..... .+...+. +..|++..|++... +.+..+ ..|+++|+..|.|+.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 34566666666666532211 1222233 55577777776532 344555 566777777777772
Q ss_pred -CCCCCCCCCCeeecccccccc
Q 017047 333 -PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 333 -~~f~~L~nLk~LdLsnNrIs~ 353 (378)
..+..+.+++.|.+.+|.+..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 334455567777777777653
No 85
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=50.48 E-value=1.8 Score=44.42 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=29.0
Q ss_pred CCCcceEEecCCcCCccCccccCCCCCccEEEcCCC-CCCCc---ccCCCCCCCcEEeCCCCCCC
Q 017047 271 AGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN-MLSTL---EGIEILTRVKVLDLSFNDFK 331 (378)
Q Consensus 271 lssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~N-kLs~L---~~f~~LtnLq~LdLS~N~Ls 331 (378)
|.+|+.|.|.||+|..-....+..-.+|+.|+|+.+ .|+.. --|..|..|+.|+|++..+.
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 444555555566555433222322245555555543 22211 12345666666666655544
No 86
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=48.79 E-value=1.1 Score=46.08 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=57.4
Q ss_pred CcceEEecCCcCCccC-ccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCC-CCCCC----CCCCCCCCCCee
Q 017047 273 DDVRLDLRGHRVRSLI-ASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSF-NDFKG----PGFEPLENCKAL 344 (378)
Q Consensus 273 sL~~LDLSgN~LssL~-~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~-N~Ls~----~~f~~L~nLk~L 344 (378)
.|++|||+.-.|+.-. ...+..|..|+.|.|.+|+|... ..+..-.+|+.|||+. |.|+. -.|..|..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4888999988887321 11245678899999999999764 6777888999999984 45662 345677777777
Q ss_pred eccccccc
Q 017047 345 QFCSNCIL 352 (378)
Q Consensus 345 dLsnNrIs 352 (378)
+|+-+.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 77665543
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=46.35 E-value=11 Score=47.62 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=12.8
Q ss_pred ecCCcCCccCccccCCCCCccEEEcCCC
Q 017047 279 LRGHRVRSLIASGLNLQPNLEFVYLRDN 306 (378)
Q Consensus 279 LSgN~LssL~~s~f~lL~nLe~LdLs~N 306 (378)
|++|+|+.|+...|..+.+|+.|+|.+|
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgN 29 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGN 29 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCC
Confidence 4444444444444444444444444444
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=41.75 E-value=2.4 Score=44.84 Aligned_cols=102 Identities=22% Similarity=0.160 Sum_probs=61.6
Q ss_pred ccccccCCCceeecCc-----ccccCCCcceEEecCCcCCccCcc----ccCCC-CCccEEEcCCCCCCCc------ccC
Q 017047 251 AGTPQSKDSRFIVLPQ-----VEIKAGDDVRLDLRGHRVRSLIAS----GLNLQ-PNLEFVYLRDNMLSTL------EGI 314 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP~-----l~~KlssL~~LDLSgN~LssL~~s----~f~lL-~nLe~LdLs~NkLs~L------~~f 314 (378)
...+.+.+|.+..... ...-...|..|+|++|.|...... .+... ..|+.|++..|.++.. ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 3445555555554322 122345677788888888732211 12221 4466677777777654 456
Q ss_pred CCCCCCcEEeCCCCCCC--C-----CC----CCCCCCCCeeeccccccc
Q 017047 315 EILTRVKVLDLSFNDFK--G-----PG----FEPLENCKALQFCSNCIL 352 (378)
Q Consensus 315 ~~LtnLq~LdLS~N~Ls--~-----~~----f~~L~nLk~LdLsnNrIs 352 (378)
.....|+.||++.|.|. + .. +....+++.|++.+|.++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 66778888888888875 1 22 334667888888888776
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.29 E-value=18 Score=45.96 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=28.3
Q ss_pred EcCCCCCCCc--ccCCCCCCCcEEeCCCCCCCC
Q 017047 302 YLRDNMLSTL--EGIEILTRVKVLDLSFNDFKG 332 (378)
Q Consensus 302 dLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~ 332 (378)
||++|+|..| ..|..|.+|+.|+|++|.|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 6899999999 678899999999999999984
No 90
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=30.75 E-value=21 Score=35.27 Aligned_cols=62 Identities=31% Similarity=0.215 Sum_probs=41.8
Q ss_pred cCCCcceEEecCCc-CCccCcccc-CCCCCccEEEcCCCC-CCC--c-ccCCCCCCCcEEeCCCCCCC
Q 017047 270 KAGDDVRLDLRGHR-VRSLIASGL-NLQPNLEFVYLRDNM-LST--L-EGIEILTRVKVLDLSFNDFK 331 (378)
Q Consensus 270 KlssL~~LDLSgN~-LssL~~s~f-~lL~nLe~LdLs~Nk-Ls~--L-~~f~~LtnLq~LdLS~N~Ls 331 (378)
.+..|+.|+|++.. ++..--..+ ..|++|+.|.+.++. ++. + .....+++|+.|+|+++...
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 45778889999877 553322222 236899999977766 443 3 34467888999999977653
No 91
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.64 E-value=20 Score=34.85 Aligned_cols=79 Identities=18% Similarity=0.080 Sum_probs=51.1
Q ss_pred cceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCC-CCC---CCCC-CCCCCCeeec
Q 017047 274 DVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFND-FKG---PGFE-PLENCKALQF 346 (378)
Q Consensus 274 L~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~-Ls~---~~f~-~L~nLk~LdL 346 (378)
-..+.-.+|..-.++...+.. -.++.+|-++..|... +.+.+|+.|+.|.+.+.. |.. ..++ ...+|+.|+|
T Consensus 80 ~~~~~~d~~g~~~lp~~~~~~-~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~l 158 (221)
T KOG3864|consen 80 REWLQKDYNGYFSLPGPNADN-VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDL 158 (221)
T ss_pred hHhhcCcccceecCCCCCCCc-ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeec
Confidence 334556667655566544444 4589999999988654 777777777777776543 221 2222 4468999999
Q ss_pred ccc-cccc
Q 017047 347 CSN-CILL 353 (378)
Q Consensus 347 snN-rIs~ 353 (378)
..| +|+.
T Consensus 159 sgC~rIT~ 166 (221)
T KOG3864|consen 159 SGCPRITD 166 (221)
T ss_pred cCCCeech
Confidence 955 5664
Done!