Query 017047
Match_columns 378
No_of_seqs 274 out of 1719
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:03:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wfh_A SLIT homolog 2 protein 99.5 6E-14 2E-18 123.8 11.1 109 250-358 32-145 (193)
2 2v9t_B SLIT homolog 2 protein 99.5 1.2E-13 4E-18 123.8 11.5 115 245-359 52-172 (220)
3 3g39_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 119.4 11.0 101 253-355 13-118 (170)
4 1w8a_A SLIT protein; signaling 99.5 9.9E-14 3.4E-18 121.6 10.5 108 250-357 30-144 (192)
5 2v70_A SLIT-2, SLIT homolog 2 99.5 1.5E-13 5.3E-18 123.0 11.8 113 245-357 53-171 (220)
6 2r9u_A Variable lymphocyte rec 99.5 1.8E-13 6.2E-18 119.1 10.9 102 252-355 15-121 (174)
7 2v9t_B SLIT homolog 2 protein 99.4 3.3E-13 1.1E-17 120.9 11.0 107 249-355 32-144 (220)
8 4g8a_A TOLL-like receptor 4; l 99.4 3.7E-13 1.3E-17 132.7 11.4 110 245-354 72-188 (635)
9 3m19_A Variable lymphocyte rec 99.4 9.3E-13 3.2E-17 118.9 12.8 110 245-354 79-194 (251)
10 3e6j_A Variable lymphocyte rec 99.4 6.2E-13 2.1E-17 119.6 11.1 111 245-355 60-175 (229)
11 2o6r_A Variable lymphocyte rec 99.4 1E-12 3.4E-17 112.5 11.3 106 250-355 29-140 (177)
12 2v70_A SLIT-2, SLIT homolog 2 99.4 9.2E-13 3.1E-17 118.0 11.3 104 252-355 35-145 (220)
13 3m19_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 118.4 11.6 111 245-355 55-171 (251)
14 3e6j_A Variable lymphocyte rec 99.4 8.1E-13 2.8E-17 118.8 10.4 107 249-355 40-151 (229)
15 2ifg_A High affinity nerve gro 99.4 6.5E-13 2.2E-17 124.5 9.9 104 253-358 12-122 (347)
16 2o6s_A Variable lymphocyte rec 99.4 1.4E-12 4.9E-17 114.0 11.3 110 245-354 48-163 (208)
17 2o6s_A Variable lymphocyte rec 99.4 1.6E-12 5.6E-17 113.6 11.6 106 250-355 29-140 (208)
18 1p9a_G Platelet glycoprotein I 99.4 1.4E-12 4.7E-17 121.7 11.4 102 251-352 79-185 (290)
19 2je0_A Acidic leucine-rich nuc 99.4 5.3E-13 1.8E-17 111.0 7.5 106 249-356 17-130 (149)
20 1w8a_A SLIT protein; signaling 99.4 9.4E-13 3.2E-17 115.4 9.3 101 252-354 11-117 (192)
21 3rfs_A Internalin B, repeat mo 99.4 2.2E-12 7.5E-17 118.1 12.2 107 248-354 108-220 (272)
22 3rfs_A Internalin B, repeat mo 99.4 3E-12 1E-16 117.1 12.1 113 243-355 79-197 (272)
23 2wfh_A SLIT homolog 2 protein 99.4 1.7E-12 5.8E-17 114.5 10.1 101 252-355 13-118 (193)
24 2o6q_A Variable lymphocyte rec 99.4 3.5E-12 1.2E-16 116.3 12.3 109 247-355 83-197 (270)
25 4g8a_A TOLL-like receptor 4; l 99.4 1.3E-12 4.4E-17 128.9 10.1 105 250-354 53-163 (635)
26 1xeu_A Internalin C; cellular 99.4 1.6E-12 5.5E-17 119.6 9.5 104 247-354 83-187 (263)
27 1xeu_A Internalin C; cellular 99.4 2.4E-12 8.1E-17 118.5 10.4 107 244-354 58-165 (263)
28 2xot_A Amphoterin-induced prot 99.4 1.9E-12 6.6E-17 123.5 9.9 107 248-354 63-178 (361)
29 2ell_A Acidic leucine-rich nuc 99.3 1E-12 3.6E-17 111.2 7.0 104 250-355 25-136 (168)
30 2o6r_A Variable lymphocyte rec 99.3 5E-12 1.7E-16 108.1 10.9 101 253-355 11-116 (177)
31 1h6t_A Internalin B; cell adhe 99.3 2.7E-12 9.4E-17 119.5 10.0 109 245-356 86-195 (291)
32 2o6q_A Variable lymphocyte rec 99.3 7.5E-12 2.6E-16 114.1 12.6 108 247-354 107-220 (270)
33 4ezg_A Putative uncharacterize 99.3 1.8E-12 6.1E-17 113.3 8.1 108 247-355 64-175 (197)
34 1a9n_A U2A', U2A'; complex (nu 99.3 1.2E-12 4.2E-17 112.4 6.6 108 245-354 15-128 (176)
35 4ezg_A Putative uncharacterize 99.3 2.7E-12 9.2E-17 112.1 8.4 110 244-353 83-195 (197)
36 2xot_A Amphoterin-induced prot 99.3 3.7E-12 1.3E-16 121.5 10.0 104 251-354 41-151 (361)
37 1h6u_A Internalin H; cell adhe 99.3 6.3E-12 2.2E-16 117.7 10.4 109 245-356 81-190 (308)
38 1h6t_A Internalin B; cell adhe 99.3 7.3E-12 2.5E-16 116.6 10.6 126 226-354 86-215 (291)
39 1p9a_G Platelet glycoprotein I 99.3 1.5E-11 5.2E-16 114.6 12.5 110 248-357 99-213 (290)
40 1ozn_A Reticulon 4 receptor; N 99.3 1.4E-11 4.9E-16 112.4 11.6 101 252-352 132-238 (285)
41 1ozn_A Reticulon 4 receptor; N 99.3 1.3E-11 4.4E-16 112.6 11.2 110 245-354 76-192 (285)
42 1h6u_A Internalin H; cell adhe 99.3 8.1E-12 2.8E-16 117.0 9.8 105 246-353 126-231 (308)
43 2z62_A TOLL-like receptor 4, v 99.3 1.7E-11 5.9E-16 111.3 11.7 110 245-354 48-164 (276)
44 2ell_A Acidic leucine-rich nuc 99.3 3.2E-12 1.1E-16 108.2 6.2 108 246-354 46-162 (168)
45 3zyj_A Leucine-rich repeat-con 99.3 1E-11 3.5E-16 120.8 10.4 113 245-358 181-298 (440)
46 3v47_A TOLL-like receptor 5B a 99.3 1.3E-11 4.5E-16 118.7 10.9 109 247-355 297-411 (455)
47 2z62_A TOLL-like receptor 4, v 99.3 1.3E-11 4.4E-16 112.1 10.1 108 247-354 74-192 (276)
48 1m9s_A Internalin B; cell inva 99.3 1E-11 3.4E-16 128.9 10.5 109 245-356 83-192 (605)
49 1a9n_A U2A', U2A'; complex (nu 99.3 3.5E-12 1.2E-16 109.6 5.7 104 250-354 43-155 (176)
50 2z66_A Variable lymphocyte rec 99.3 1.8E-11 6E-16 112.6 10.2 110 247-356 148-265 (306)
51 3zyj_A Leucine-rich repeat-con 99.2 3.2E-11 1.1E-15 117.3 12.0 101 251-351 138-243 (440)
52 4b8c_D Glucose-repressible alc 99.2 8.4E-12 2.9E-16 131.5 8.4 109 245-354 220-331 (727)
53 3zyi_A Leucine-rich repeat-con 99.2 2.1E-11 7.2E-16 119.0 10.5 113 245-358 192-309 (452)
54 3o6n_A APL1; leucine-rich repe 99.2 3.6E-11 1.2E-15 114.4 11.1 109 246-354 66-180 (390)
55 1xku_A Decorin; proteoglycan, 99.2 3.1E-11 1.1E-15 112.4 10.4 104 249-354 171-278 (330)
56 2id5_A Lingo-1, leucine rich r 99.2 3.4E-11 1.2E-15 117.3 11.1 109 246-354 53-167 (477)
57 3zyi_A Leucine-rich repeat-con 99.2 3.1E-11 1.1E-15 117.8 10.4 107 248-354 122-233 (452)
58 1m9s_A Internalin B; cell inva 99.2 3.4E-11 1.1E-15 125.0 11.1 126 226-354 83-212 (605)
59 2id5_A Lingo-1, leucine rich r 99.2 2.9E-11 9.8E-16 117.8 9.7 110 245-354 76-191 (477)
60 3vq2_A TLR4, TOLL-like recepto 99.2 3.4E-11 1.2E-15 120.3 10.4 110 245-354 52-168 (606)
61 4fcg_A Uncharacterized protein 99.2 2.9E-11 9.9E-16 114.4 9.3 106 248-354 182-292 (328)
62 3vq2_A TLR4, TOLL-like recepto 99.2 6.4E-11 2.2E-15 118.3 12.2 105 249-353 32-142 (606)
63 3v47_A TOLL-like receptor 5B a 99.2 5.8E-11 2E-15 114.2 11.5 110 245-354 50-169 (455)
64 2xwt_C Thyrotropin receptor; s 99.2 1.4E-11 4.8E-16 109.9 6.5 105 248-352 54-169 (239)
65 4fmz_A Internalin; leucine ric 99.2 3E-11 1E-15 112.5 8.9 108 246-356 218-328 (347)
66 1dce_A Protein (RAB geranylger 99.2 2.2E-11 7.7E-16 125.1 8.9 103 251-355 443-549 (567)
67 1ogq_A PGIP-2, polygalacturona 99.2 2.9E-11 9.9E-16 113.2 8.7 104 250-354 175-283 (313)
68 2xwt_C Thyrotropin receptor; s 99.2 1.3E-11 4.4E-16 110.1 5.7 105 250-354 32-146 (239)
69 3oja_B Anopheles plasmodium-re 99.2 6.2E-11 2.1E-15 120.4 11.1 109 246-354 72-186 (597)
70 3t6q_A CD180 antigen; protein- 99.2 6.7E-11 2.3E-15 118.2 11.1 110 245-354 53-168 (606)
71 2z80_A TOLL-like receptor 2, v 99.2 5E-11 1.7E-15 112.2 9.5 104 249-352 76-187 (353)
72 2z7x_B TOLL-like receptor 1, v 99.2 3.9E-11 1.3E-15 117.9 9.1 104 249-353 21-129 (520)
73 3o6n_A APL1; leucine-rich repe 99.2 5.6E-11 1.9E-15 113.1 9.8 107 249-355 45-157 (390)
74 2z66_A Variable lymphocyte rec 99.2 5E-11 1.7E-15 109.6 9.0 109 246-354 123-238 (306)
75 3t6q_A CD180 antigen; protein- 99.2 6.2E-11 2.1E-15 118.4 10.4 105 250-354 34-144 (606)
76 4glp_A Monocyte differentiatio 99.2 6.3E-11 2.1E-15 110.1 9.7 105 247-353 195-308 (310)
77 3rgz_A Protein brassinosteroid 99.2 4.9E-11 1.7E-15 124.8 9.8 83 272-354 632-719 (768)
78 2z63_A TOLL-like receptor 4, v 99.2 7.3E-11 2.5E-15 116.2 10.1 110 245-354 48-164 (570)
79 1ziw_A TOLL-like receptor 3; i 99.2 1.1E-10 3.7E-15 118.5 11.5 110 245-354 45-160 (680)
80 2je0_A Acidic leucine-rich nuc 99.2 2E-11 6.9E-16 101.4 5.0 99 249-348 42-149 (149)
81 2z63_A TOLL-like receptor 4, v 99.2 1.3E-10 4.5E-15 114.4 11.5 104 250-353 29-138 (570)
82 2z80_A TOLL-like receptor 2, v 99.2 4.4E-11 1.5E-15 112.6 7.6 105 250-354 53-165 (353)
83 4fcg_A Uncharacterized protein 99.2 2.7E-11 9.2E-16 114.6 6.1 104 249-353 150-267 (328)
84 2z7x_B TOLL-like receptor 1, v 99.1 4.1E-11 1.4E-15 117.8 7.4 105 244-351 40-150 (520)
85 2z81_A CD282 antigen, TOLL-lik 99.1 1.4E-10 4.7E-15 114.3 11.1 109 246-354 384-512 (549)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.3E-10 4.4E-15 116.3 10.7 104 249-353 52-160 (562)
87 1ogq_A PGIP-2, polygalacturona 99.1 9E-11 3.1E-15 109.9 8.9 106 247-353 147-258 (313)
88 1wwl_A Monocyte differentiatio 99.1 9.6E-11 3.3E-15 109.2 8.9 79 272-352 228-309 (312)
89 4fmz_A Internalin; leucine ric 99.1 2.1E-10 7.3E-15 106.7 11.1 104 249-355 88-193 (347)
90 3bz5_A Internalin-J, INLJ; leu 99.1 1.6E-10 5.6E-15 114.7 11.0 95 249-349 64-158 (457)
91 2ft3_A Biglycan; proteoglycan, 99.1 6.4E-11 2.2E-15 110.6 7.5 102 251-352 195-307 (332)
92 3o53_A Protein LRIM1, AGAP0063 99.1 6.9E-11 2.4E-15 110.4 7.6 104 251-354 122-229 (317)
93 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 7.5E-11 2.5E-15 118.0 8.4 105 244-351 71-181 (562)
94 2z81_A CD282 antigen, TOLL-lik 99.1 1.2E-10 4.1E-15 114.7 9.5 100 251-350 28-134 (549)
95 1xku_A Decorin; proteoglycan, 99.1 3.3E-10 1.1E-14 105.4 11.8 106 249-354 192-308 (330)
96 3oja_B Anopheles plasmodium-re 99.1 1.7E-10 5.7E-15 117.2 10.5 107 249-355 51-163 (597)
97 1wwl_A Monocyte differentiatio 99.1 4.2E-11 1.4E-15 111.6 5.6 106 249-354 149-268 (312)
98 3g39_A Variable lymphocyte rec 99.1 1.5E-10 5.2E-15 99.9 8.6 84 249-332 30-116 (170)
99 1o6v_A Internalin A; bacterial 99.1 1.7E-10 5.8E-15 113.0 9.8 100 252-354 268-368 (466)
100 3o53_A Protein LRIM1, AGAP0063 99.1 1.6E-10 5.4E-15 108.0 8.7 104 247-352 142-250 (317)
101 1o6v_A Internalin A; bacterial 99.1 2.5E-10 8.7E-15 111.8 10.1 107 246-355 240-347 (466)
102 3oja_A Leucine-rich immune mol 99.1 1.2E-10 3.9E-15 116.5 7.8 102 252-353 123-228 (487)
103 1ziw_A TOLL-like receptor 3; i 99.1 2E-10 6.8E-15 116.6 9.5 106 249-354 25-136 (680)
104 2r9u_A Variable lymphocyte rec 99.1 2.5E-10 8.5E-15 99.3 8.6 84 249-332 33-119 (174)
105 2ft3_A Biglycan; proteoglycan, 99.1 3.6E-10 1.2E-14 105.5 9.8 106 245-354 74-187 (332)
106 3bz5_A Internalin-J, INLJ; leu 99.1 7E-10 2.4E-14 110.2 11.7 103 246-354 82-185 (457)
107 3oja_A Leucine-rich immune mol 99.0 1.4E-10 4.8E-15 115.9 6.0 105 247-353 142-251 (487)
108 3rgz_A Protein brassinosteroid 99.0 4.9E-10 1.7E-14 117.3 10.3 104 249-352 418-527 (768)
109 1ds9_A Outer arm dynein; leuci 99.0 2.3E-12 7.8E-17 112.7 -6.7 109 244-354 43-155 (198)
110 4ay9_X Follicle-stimulating ho 99.0 3.3E-10 1.1E-14 107.4 7.5 100 253-354 13-119 (350)
111 4b8c_D Glucose-repressible alc 99.0 2.9E-10 9.8E-15 119.8 6.9 109 245-354 196-308 (727)
112 3j0a_A TOLL-like receptor 5; m 99.0 6E-10 2E-14 117.8 8.7 110 245-354 44-163 (844)
113 3j0a_A TOLL-like receptor 5; m 99.0 1.1E-09 3.6E-14 115.9 10.5 105 250-354 25-138 (844)
114 1dce_A Protein (RAB geranylger 99.0 9.4E-10 3.2E-14 113.1 9.6 100 245-346 459-567 (567)
115 4eco_A Uncharacterized protein 99.0 9.5E-10 3.2E-14 113.1 9.6 104 249-352 457-579 (636)
116 4glp_A Monocyte differentiatio 99.0 3.3E-10 1.1E-14 105.3 4.9 103 250-352 146-264 (310)
117 4eco_A Uncharacterized protein 99.0 4.5E-10 1.5E-14 115.5 6.0 108 245-352 202-343 (636)
118 2ifg_A High affinity nerve gro 98.9 1.6E-09 5.5E-14 101.4 8.8 87 245-332 27-117 (347)
119 1ds9_A Outer arm dynein; leuci 98.9 4.5E-12 1.5E-16 110.8 -8.5 95 260-356 36-132 (198)
120 4ecn_A Leucine-rich repeat pro 98.9 2.6E-09 9E-14 115.8 10.0 102 250-353 549-658 (876)
121 1jl5_A Outer protein YOPM; leu 98.9 5.8E-09 2E-13 103.6 11.4 103 245-354 149-252 (454)
122 4ecn_A Leucine-rich repeat pro 98.9 1.2E-09 4.2E-14 118.4 5.8 108 245-352 444-586 (876)
123 1jl5_A Outer protein YOPM; leu 98.9 9.1E-09 3.1E-13 102.1 11.1 122 226-354 149-272 (454)
124 3cvr_A Invasion plasmid antige 98.8 9.3E-09 3.2E-13 106.5 11.1 96 249-355 100-196 (571)
125 3cvr_A Invasion plasmid antige 98.8 8E-09 2.7E-13 107.0 10.3 94 250-354 121-222 (571)
126 3g06_A SSPH2 (leucine-rich rep 98.7 2.3E-08 7.9E-13 104.3 10.2 92 254-354 206-299 (622)
127 3g06_A SSPH2 (leucine-rich rep 98.7 2.9E-08 9.9E-13 103.6 9.7 95 249-354 61-156 (622)
128 2ast_B S-phase kinase-associat 98.7 2.8E-09 9.6E-14 98.4 1.5 103 248-350 92-206 (336)
129 4ay9_X Follicle-stimulating ho 98.7 1.4E-08 4.7E-13 96.3 5.4 55 298-352 156-215 (350)
130 2ca6_A RAN GTPase-activating p 98.7 1.8E-09 6.2E-14 102.8 -1.4 83 272-354 159-259 (386)
131 3goz_A Leucine-rich repeat-con 98.6 5.8E-09 2E-13 99.1 1.8 81 251-331 24-122 (362)
132 3goz_A Leucine-rich repeat-con 98.6 7.6E-09 2.6E-13 98.3 2.3 101 255-355 4-125 (362)
133 2ca6_A RAN GTPase-activating p 98.6 5.7E-09 1.9E-13 99.4 0.8 104 250-354 188-318 (386)
134 2ast_B S-phase kinase-associat 98.6 6.5E-09 2.2E-13 96.0 0.1 108 245-352 114-236 (336)
135 3sb4_A Hypothetical leucine ri 98.5 3E-07 1E-11 86.2 8.1 85 271-357 225-315 (329)
136 3sb4_A Hypothetical leucine ri 98.4 3.2E-07 1.1E-11 86.0 7.5 96 249-346 226-328 (329)
137 3rw6_A Nuclear RNA export fact 98.4 3.9E-08 1.3E-12 93.4 1.0 61 271-331 169-233 (267)
138 1z7x_W Ribonuclease inhibitor; 98.4 3.6E-08 1.2E-12 94.7 -0.1 105 249-353 28-156 (461)
139 1z7x_W Ribonuclease inhibitor; 98.4 3.4E-08 1.2E-12 94.8 -0.6 104 250-353 200-327 (461)
140 3un9_A NLR family member X1; l 98.3 2.6E-08 8.8E-13 97.1 -4.1 104 251-354 128-254 (372)
141 1io0_A Tropomodulin; LRR prote 98.2 1.8E-07 6.2E-12 82.1 0.3 108 246-353 33-165 (185)
142 3un9_A NLR family member X1; l 98.2 1.4E-07 4.8E-12 91.9 -1.0 104 250-353 102-225 (372)
143 3rw6_A Nuclear RNA export fact 98.1 3.9E-07 1.3E-11 86.5 -0.7 77 277-353 148-234 (267)
144 1io0_A Tropomodulin; LRR prote 97.9 2.3E-06 7.9E-11 75.0 1.5 87 268-354 32-138 (185)
145 3ogk_B Coronatine-insensitive 97.8 1.8E-06 6.3E-11 85.5 -1.4 85 270-354 434-528 (592)
146 4fdw_A Leucine rich hypothetic 97.8 5.1E-05 1.7E-09 74.7 8.6 103 244-347 175-308 (401)
147 4fdw_A Leucine rich hypothetic 97.8 7.5E-05 2.5E-09 73.5 9.3 91 261-354 259-360 (401)
148 2p1m_B Transport inhibitor res 97.4 7.4E-06 2.5E-10 81.0 -2.9 82 270-352 430-519 (594)
149 3ogk_B Coronatine-insensitive 97.4 0.00011 3.7E-09 72.8 4.9 52 296-347 270-326 (592)
150 3rfe_A Platelet glycoprotein I 97.3 0.00032 1.1E-08 59.1 6.4 53 276-331 12-68 (130)
151 3e4g_A ATP synthase subunit S, 97.2 7.4E-05 2.5E-09 67.3 0.9 91 263-353 52-154 (176)
152 4h09_A Hypothetical leucine ri 97.2 0.0017 5.8E-08 61.4 9.9 84 270-356 261-349 (379)
153 4gt6_A Cell surface protein; l 97.1 0.0013 4.3E-08 63.1 8.6 81 269-352 285-370 (394)
154 4gt6_A Cell surface protein; l 97.1 0.00058 2E-08 65.5 5.7 91 260-352 298-391 (394)
155 3rfe_A Platelet glycoprotein I 97.0 0.00047 1.6E-08 58.0 4.4 55 253-309 12-68 (130)
156 2p1m_B Transport inhibitor res 97.0 0.00013 4.4E-09 72.1 0.7 99 250-349 106-221 (594)
157 2ra8_A Uncharacterized protein 97.0 0.00033 1.1E-08 68.4 3.0 83 270-352 217-320 (362)
158 2ra8_A Uncharacterized protein 96.8 0.00016 5.5E-09 70.7 -0.9 99 253-353 176-293 (362)
159 4fs7_A Uncharacterized protein 96.7 0.0031 1.1E-07 60.5 7.7 77 270-349 295-376 (394)
160 4h09_A Hypothetical leucine ri 96.6 0.0087 3E-07 56.5 10.0 85 269-356 237-326 (379)
161 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0016 5.3E-08 59.6 3.3 79 271-349 40-136 (197)
162 4fs7_A Uncharacterized protein 96.2 0.003 1E-07 60.5 4.1 88 254-344 302-393 (394)
163 1pgv_A TMD-1, tropomodulin TMD 95.6 0.0036 1.2E-07 57.1 1.5 102 251-352 43-170 (197)
164 3e4g_A ATP synthase subunit S, 93.6 0.012 4E-07 52.9 -0.3 58 296-353 61-129 (176)
165 2lz0_A Uncharacterized protein 77.4 2.6 9E-05 33.9 4.5 48 281-329 5-54 (100)
166 2lz0_A Uncharacterized protein 53.3 16 0.00053 29.3 4.5 45 306-350 6-54 (100)
No 1
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=6e-14 Score=123.84 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=97.9
Q ss_pred cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCC
Q 017047 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSF 327 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~ 327 (378)
+...+++.+|+|..+|..+..+..|+.|||++|+|+.+++..|..+++|+.|+|++|+|..+ ..|..+++|++|+|++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 56678899999999998778899999999999999999988899999999999999999999 4699999999999999
Q ss_pred CCCCC---CCCCCCCCCCeeeccccccccccccc
Q 017047 328 NDFKG---PGFEPLENCKALQFCSNCILLETKLH 358 (378)
Q Consensus 328 N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L~ 358 (378)
|+|+. ..|..+.+|+.|++.+|.|.....+.
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 112 NDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 99993 46889999999999999998665543
No 2
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=1.2e-13 Score=123.81 Aligned_cols=115 Identities=18% Similarity=0.249 Sum_probs=93.4
Q ss_pred hhccccccccccCCCceeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
|....+...+++.+|+|..+ |..+..+.+|++|+|++|+|..++...|..+++|++|+|++|+|..+ ..|..+.+|+
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 44445667788888888887 55556788899999999999998888788888999999999999888 5788899999
Q ss_pred EEeCCCCCCCC---CCCCCCCCCCeeeccccccccccccch
Q 017047 322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLETKLHL 359 (378)
Q Consensus 322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L~l 359 (378)
+|+|++|+|+. ..|..+.+|+.|++.+|.|.....+.+
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~ 172 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKW 172 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHH
Confidence 99999999983 458888899999999999877655543
No 3
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.2e-13 Score=119.41 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=90.2
Q ss_pred ccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCC
Q 017047 253 TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDF 330 (378)
Q Consensus 253 T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~L 330 (378)
++++.+|+|..+|..+ ...|++|+|++|+|+.+++..|..+++|++|+|++|+|..+ ..|..+.+|++|+|++|+|
T Consensus 13 ~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 5678899999999755 37899999999999999988898899999999999999999 3578999999999999999
Q ss_pred CC---CCCCCCCCCCeeecccccccccc
Q 017047 331 KG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 331 s~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
+. ..|..|.+|+.|+|.+|.|....
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 94 45889999999999999998654
No 4
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=9.9e-14 Score=121.60 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=95.9
Q ss_pred cccccccCCCceeecCcc--cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047 250 RAGTPQSKDSRFIVLPQV--EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL 325 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l--~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL 325 (378)
+...+++.+|+|..++.. +..+.+|++|+|++|+|+++.+..|..+++|++|+|++|+|.++ ..|..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 566788899999998864 56889999999999999999888898899999999999999998 45899999999999
Q ss_pred CCCCCCC---CCCCCCCCCCeeecccccccccccc
Q 017047 326 SFNDFKG---PGFEPLENCKALQFCSNCILLETKL 357 (378)
Q Consensus 326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L 357 (378)
++|+|+. ..|..+.+|+.|++.+|.|.....+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999993 6788999999999999999866544
No 5
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=123.05 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=93.4
Q ss_pred hhccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
|....+...+++.+|+|..++. .+..+..|++|+|++|+|..+++..|..+++|++|+|++|+|.++ ..|..+.+|+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 3445567778888888888876 345788899999999999998888788889999999999999888 5688899999
Q ss_pred EEeCCCCCCCC---CCCCCCCCCCeeecccccccccccc
Q 017047 322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLETKL 357 (378)
Q Consensus 322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L 357 (378)
+|+|++|+|+. ..|..+.+|+.|++.+|.|.+...+
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999999983 5788888999999999998866554
No 6
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=1.8e-13 Score=119.14 Aligned_cols=102 Identities=23% Similarity=0.282 Sum_probs=90.5
Q ss_pred cccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-c-cCCCCCCCcEEeCCCCC
Q 017047 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-E-GIEILTRVKVLDLSFND 329 (378)
Q Consensus 252 ~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~-~f~~LtnLq~LdLS~N~ 329 (378)
..+++.+|+|..+|..+. .+|++|+|++|+|..+++..|..+++|++|+|++|+|.++ + .|..+.+|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 457788999999998654 7899999999999999988898899999999999999999 3 47899999999999999
Q ss_pred CCC---CCCCCCCCCCeeecccccccccc
Q 017047 330 FKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 330 Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
|+. ..|..|.+|+.|+|.+|.|....
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 994 34899999999999999998654
No 7
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=3.3e-13 Score=120.89 Aligned_cols=107 Identities=19% Similarity=0.187 Sum_probs=94.6
Q ss_pred ccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047 249 RRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL 325 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL 325 (378)
.+...+++.+|+|..+|.. +..+.+|+.|+|++|+|..+.+..|..+++|++|+|++|+|..+ ..|..+.+|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 3456778899999998874 44688999999999999999888899999999999999999999 34789999999999
Q ss_pred CCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047 326 SFNDFKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
++|+|+. ..|..+.+|+.|+|.+|+|..+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 9999994 67899999999999999998764
No 8
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.44 E-value=3.7e-13 Score=132.71 Aligned_cols=110 Identities=18% Similarity=0.125 Sum_probs=60.5
Q ss_pred hhccccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
|....+...+++.+|+|..+|+. +..+.+|++|+|++|+|+.+++..|..+.+|++|+|++|+|.++ ..|.+|++|+
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 151 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence 33444455555555555555443 23455566666666666665555555555666666666666555 2355566666
Q ss_pred EEeCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFKG----PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|++|+|+. ..+..|.+|+.|++.+|+|..+
T Consensus 152 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 152 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred eeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 66666665541 2344555566666666655543
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=9.3e-13 Score=118.90 Aligned_cols=110 Identities=20% Similarity=0.257 Sum_probs=86.7
Q ss_pred hhccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
|....+...+++.+|+|..+|... ..+.+|++|+|++|+|..+++..|..+++|++|+|++|+|..+ ..|..+++|+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 334456677788888888877654 3677888888888888888877777778888888888888888 3578888888
Q ss_pred EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|++|+|+. ..|..+.+|+.|++.+|.|...
T Consensus 159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 88888888883 4677888888888888888754
No 10
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=6.2e-13 Score=119.55 Aligned_cols=111 Identities=21% Similarity=0.171 Sum_probs=93.9
Q ss_pred hhccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcE
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKV 322 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~ 322 (378)
|....+...+++.+|+|..+|... ..+.+|+.|+|++|+|+.+++..|..+++|++|+|++|+|..+ ..+..+.+|++
T Consensus 60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 139 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSE
T ss_pred hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCE
Confidence 344556777888899998888655 4788899999999999999888788889999999999999988 78889999999
Q ss_pred EeCCCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047 323 LDLSFNDFKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 323 LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
|+|++|+|+. ..|..+.+|+.|++.+|.|.+..
T Consensus 140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999999993 45888899999999999987553
No 11
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=1e-12 Score=112.50 Aligned_cols=106 Identities=23% Similarity=0.268 Sum_probs=92.7
Q ss_pred cccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047 250 RAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS 326 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS 326 (378)
+...+++.+|+|..+|... ..+.+|++|+|++|+|..+++..|..+++|++|+|++|+|.++ ..|..+.+|++|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 5567788899999888765 4788999999999999999988888889999999999999998 347899999999999
Q ss_pred CCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047 327 FNDFKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 327 ~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
+|+|+. ..|..+.+|+.|++.+|.|....
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 999994 44688999999999999998653
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=9.2e-13 Score=118.00 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=93.0
Q ss_pred cccccCCCceeecCcc--cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCC
Q 017047 252 GTPQSKDSRFIVLPQV--EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSF 327 (378)
Q Consensus 252 ~T~dlrdnrfs~LP~l--~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~ 327 (378)
..+++.+|+|..++.. +..+..|+.|+|++|+|+.+++..|..+++|++|+|++|+|.++ ..|..+.+|++|+|++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 4678899999998542 45789999999999999999988899999999999999999998 4589999999999999
Q ss_pred CCCCC---CCCCCCCCCCeeecccccccccc
Q 017047 328 NDFKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 328 N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
|+|+. ..|..+.+|+.|+|.+|+|..+.
T Consensus 115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp SCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred CcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 99994 67899999999999999998763
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.41 E-value=1.1e-12 Score=118.36 Aligned_cols=111 Identities=21% Similarity=0.234 Sum_probs=95.5
Q ss_pred hhccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
|....+...+++.+|+|..++... ..+.+|++|+|++|+|..+++..|..+++|++|+|++|+|..+ ..|..+.+|+
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 134 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc
Confidence 444566777888999998887754 4788999999999999999988888889999999999999998 3478999999
Q ss_pred EEeCCCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047 322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
+|+|++|+|+. ..|..+.+|+.|++.+|+|..+.
T Consensus 135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99999999994 36889999999999999998654
No 14
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=8.1e-13 Score=118.79 Aligned_cols=107 Identities=20% Similarity=0.129 Sum_probs=92.8
Q ss_pred ccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047 249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL 325 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL 325 (378)
.+...+++.+|+|..++. .+..+.+|++|+|++|+|..++...|..+++|++|+|++|+|..+ ..|..+.+|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 455678888999988854 455788999999999999999988888889999999999999998 34789999999999
Q ss_pred CCCCCC-C-CCCCCCCCCCeeecccccccccc
Q 017047 326 SFNDFK-G-PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 326 S~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
++|+|+ . ..+..+.+|+.|++.+|+|..+.
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccC
Confidence 999999 3 67788999999999999998664
No 15
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=6.5e-13 Score=124.54 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=89.8
Q ss_pred ccccCCC-ceeecCcccccCCCcceEEecC-CcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCC
Q 017047 253 TPQSKDS-RFIVLPQVEIKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFN 328 (378)
Q Consensus 253 T~dlrdn-rfs~LP~l~~KlssL~~LDLSg-N~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N 328 (378)
.+++.++ +|..+|. +..+.+|+.|+|++ |+|..+++..|..+.+|+.|+|++|+|.++ ..|..|.+|+.|||++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4466776 8999999 77888999999996 999999988899999999999999999998 46899999999999999
Q ss_pred CCCC---CCCCCCCCCCeeeccccccccccccc
Q 017047 329 DFKG---PGFEPLENCKALQFCSNCILLETKLH 358 (378)
Q Consensus 329 ~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L~ 358 (378)
+|+. ..|..+. |+.|+|.+|.|.....+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCALR 122 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCCCccH
Confidence 9994 3455554 999999999998765543
No 16
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=1.4e-12 Score=113.99 Aligned_cols=110 Identities=20% Similarity=0.152 Sum_probs=89.0
Q ss_pred hhccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
|....+...+++.+|+|..+|... ..+..|++|+|++|+|..+++..|..+++|++|+|++|+|..+ ..|..+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence 344556777888888888888755 4678899999999999988877777788899999999999888 3478889999
Q ss_pred EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|++|+|+. ..|..+.+|+.|++.+|.+...
T Consensus 128 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred EEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 99999999883 4478888999999999988754
No 17
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=1.6e-12 Score=113.63 Aligned_cols=106 Identities=23% Similarity=0.263 Sum_probs=89.1
Q ss_pred cccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047 250 RAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS 326 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS 326 (378)
+...+++.+|+|..+|... ..+.+|++|+|++|+|..++...|..+++|++|+|++|+|..+ ..|..+.+|++|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 4556778888888888754 4788899999999999999887788889999999999999988 347899999999999
Q ss_pred CCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047 327 FNDFKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 327 ~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
+|+|+. ..|..+.+|+.|++.+|+|..+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 999983 44788999999999999987553
No 18
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=1.4e-12 Score=121.68 Aligned_cols=102 Identities=25% Similarity=0.254 Sum_probs=52.9
Q ss_pred ccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCC
Q 017047 251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFN 328 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N 328 (378)
...+++.+|+|..+|.....+..|++|+|++|+|+.+++..|..+++|++|+|++|+|..+ ..|..+++|+.|+|++|
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 3444455555555555444455555555555555555554455555555555555555555 22445555555555555
Q ss_pred CCCC---CCCCCCCCCCeeeccccccc
Q 017047 329 DFKG---PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 329 ~Ls~---~~f~~L~nLk~LdLsnNrIs 352 (378)
+|+. ..|..+.+|+.|++.+|+|.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 5552 23444555555555555554
No 19
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=5.3e-13 Score=110.95 Aligned_cols=106 Identities=22% Similarity=0.109 Sum_probs=92.0
Q ss_pred ccccccccCCCcee--ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCC-c-ccCCCCCCCcEEe
Q 017047 249 RRAGTPQSKDSRFI--VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST-L-EGIEILTRVKVLD 324 (378)
Q Consensus 249 ~~~~T~dlrdnrfs--~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~-L-~~f~~LtnLq~Ld 324 (378)
.+...+++.+|++. .+|.....+.+|++|+|++|.|..+ ..+..+++|++|+|++|.|.+ + ..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44566788889888 8898777899999999999999999 467788999999999999998 5 4556799999999
Q ss_pred CCCCCCCC----CCCCCCCCCCeeeccccccccccc
Q 017047 325 LSFNDFKG----PGFEPLENCKALQFCSNCILLETK 356 (378)
Q Consensus 325 LS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i~~ 356 (378)
|++|+|+. ..|..+.+|+.|++.+|.|+....
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 99999994 678899999999999999987643
No 20
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=9.4e-13 Score=115.35 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=89.5
Q ss_pred cccccCCCceeecCcccccCCCcceEEecCCcCCccCcc-ccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCC
Q 017047 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIAS-GLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFN 328 (378)
Q Consensus 252 ~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s-~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N 328 (378)
.++++.+|+|..+|..+. ..|++|+|++|+|..+++. .|..+++|++|+|++|+|.++ ..|..+.+|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 457888999999998554 3899999999999999875 477789999999999999998 57999999999999999
Q ss_pred CCCC---CCCCCCCCCCeeeccccccccc
Q 017047 329 DFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 329 ~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+. ..|..+.+|+.|++.+|+|+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 9993 5589999999999999999865
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.39 E-value=2.2e-12 Score=118.06 Aligned_cols=107 Identities=21% Similarity=0.149 Sum_probs=67.8
Q ss_pred cccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEe
Q 017047 248 QRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLD 324 (378)
Q Consensus 248 ~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~Ld 324 (378)
..+...+++.+|+|..+|... ..+..|++|+|++|+|..+++..|..+++|+.|+|++|+|.++ ..|..+++|++|+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 345555666666666666543 3556666777777777666665566666677777777766666 2356666777777
Q ss_pred CCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 325 LSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 325 LS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
|++|+|+. ..|..+.+|+.|++.+|.|.+.
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 77777663 3356666777777777766543
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.37 E-value=3e-12 Score=117.13 Aligned_cols=113 Identities=24% Similarity=0.247 Sum_probs=93.9
Q ss_pred cchhccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCC
Q 017047 243 SNLSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTR 319 (378)
Q Consensus 243 ~sL~~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~Ltn 319 (378)
..+....+...+++.+|+|..+|... ..+.+|++|+|++|+|..+++..|..+++|++|+|++|+|.++ ..|..+++
T Consensus 79 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158 (272)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence 34556667778888999998888764 4788899999999999998887788889999999999999988 34788999
Q ss_pred CcEEeCCCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047 320 VKVLDLSFNDFKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 320 Lq~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
|++|+|++|+|+. ..|..+.+|+.|++.+|+|..+.
T Consensus 159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 9999999999984 44788899999999999988654
No 23
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=1.7e-12 Score=114.51 Aligned_cols=101 Identities=24% Similarity=0.301 Sum_probs=88.9
Q ss_pred cccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCC
Q 017047 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFND 329 (378)
Q Consensus 252 ~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~ 329 (378)
.++++.+++|..+|..+. .+|+.|+|++|+|+.++ ..|..+++|+.|+|++|.|..+ ..|..+.+|++|+|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 356788899999997543 57999999999999988 4677789999999999999999 469999999999999999
Q ss_pred CCC---CCCCCCCCCCeeecccccccccc
Q 017047 330 FKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 330 Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
|+. ..|..|.+|+.|+|.+|+|..+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence 993 56999999999999999998654
No 24
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.37 E-value=3.5e-12 Score=116.32 Aligned_cols=109 Identities=23% Similarity=0.225 Sum_probs=85.3
Q ss_pred ccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEE
Q 017047 247 GQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVL 323 (378)
Q Consensus 247 ~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~L 323 (378)
...+..++++.+|+|..+|... ..+.+|++|+|++|+|..+++..|..+++|++|+|++|.|..+ ..|..+++|++|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 3456667778888888877654 3677888888888888888877777778888888888888887 347888888888
Q ss_pred eCCCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047 324 DLSFNDFKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 324 dLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
+|++|+|+. ..|..+.+|+.|++.+|.|..+.
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 888888883 45778888888888888887553
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.37 E-value=1.3e-12 Score=128.86 Aligned_cols=105 Identities=14% Similarity=0.067 Sum_probs=94.7
Q ss_pred cccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047 250 RAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS 326 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS 326 (378)
+...+|+.+|+|..+|.. +..+.+|++|||++|+|+.+++..|..+++|++|+|++|+|..+ ..|.+|.+|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 456789999999999865 45789999999999999999998899999999999999999998 468999999999999
Q ss_pred CCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 327 FNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 327 ~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|+. ..|+.|.+|+.|++.+|.|..+
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccC
Confidence 999994 4689999999999999999754
No 26
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=1.6e-12 Score=119.60 Aligned_cols=104 Identities=21% Similarity=0.253 Sum_probs=69.8
Q ss_pred ccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCC
Q 017047 247 GQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLS 326 (378)
Q Consensus 247 ~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS 326 (378)
...+...+++.+|+|..+|.... ..|+.|+|++|+|..++ .+..+++|+.|+|++|+|+.++.+..+++|++|+|+
T Consensus 83 ~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 83 DLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLH 158 (263)
T ss_dssp TCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECT
T ss_pred cCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCChHHccCCCCCEEECC
Confidence 34445556666666666665433 56677777777777664 355667777777777777777667777777777777
Q ss_pred CCCCCC-CCCCCCCCCCeeeccccccccc
Q 017047 327 FNDFKG-PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 327 ~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|+. ..|..+.+|+.|++.+|.|...
T Consensus 159 ~N~i~~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 159 GNEITNTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence 777773 5666777777777777777644
No 27
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=2.4e-12 Score=118.51 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=81.3
Q ss_pred chhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEE
Q 017047 244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVL 323 (378)
Q Consensus 244 sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~L 323 (378)
.+....+...+++.+|+|..+|. +..+.+|+.|+|++|+|..++.. .. .+|+.|+|++|+|..++.|..+++|++|
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L 133 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI--PS-ACLSRLFLDNNELRDTDSLIHLKNLEIL 133 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTC--CC-SSCCEEECCSSCCSBSGGGTTCTTCCEE
T ss_pred HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcc--cc-CcccEEEccCCccCCChhhcCcccccEE
Confidence 34445566677777888887776 55677788888888888877643 23 6788888888888888778888888888
Q ss_pred eCCCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047 324 DLSFNDFK-GPGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 324 dLS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|++|+|+ ...+..+.+|+.|++.+|+|..+
T Consensus 134 ~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 134 SIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp ECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC
T ss_pred ECCCCcCCCChHHccCCCCCEEECCCCcCcch
Confidence 88888888 36677788888888888888766
No 28
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=1.9e-12 Score=123.51 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=69.3
Q ss_pred cccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEe
Q 017047 248 QRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLD 324 (378)
Q Consensus 248 ~~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~Ld 324 (378)
..+...+++.+|+|..++.. +..+..|++|||++|+|..+++..|..+++|++|+|++|+|..+ ..|..+.+|+.|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 34455566666777666643 34566677777777777777666666667777777777777666 4566777777777
Q ss_pred CCCCCCCC---CCC---CCCCCCCeeeccccccccc
Q 017047 325 LSFNDFKG---PGF---EPLENCKALQFCSNCILLE 354 (378)
Q Consensus 325 LS~N~Ls~---~~f---~~L~nLk~LdLsnNrIs~i 354 (378)
|++|+|+. ..| ..+.+|+.|+|.+|+|..+
T Consensus 143 L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 77777762 222 4566777777777777654
No 29
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=1e-12 Score=111.22 Aligned_cols=104 Identities=20% Similarity=0.128 Sum_probs=73.8
Q ss_pred cccccccCCCcee--ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCC-cc-cCCCCCCCcEEeC
Q 017047 250 RAGTPQSKDSRFI--VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLST-LE-GIEILTRVKVLDL 325 (378)
Q Consensus 250 ~~~T~dlrdnrfs--~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~-L~-~f~~LtnLq~LdL 325 (378)
+...+++.+|+|. .+|..+..+.+|++|+|++|.|..+ ..|..+++|++|+|++|+|.. ++ .+..+++|++|+|
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 4455666777776 6777666677778888888887777 356666778888888888777 43 3345778888888
Q ss_pred CCCCCCC----CCCCCCCCCCeeecccccccccc
Q 017047 326 SFNDFKG----PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 326 S~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
++|+|+. ..|..+.+|+.|++.+|.|....
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 8887773 45677777888888888776553
No 30
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=5e-12 Score=108.13 Aligned_cols=101 Identities=20% Similarity=0.262 Sum_probs=87.6
Q ss_pred ccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCC
Q 017047 253 TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDF 330 (378)
Q Consensus 253 T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~L 330 (378)
.+++.++++..+|... ...|+.|+|++|+|..+++..|..+++|++|+|++|+|..+ ..|..+.+|++|+|++|+|
T Consensus 11 ~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 4566778888888643 36899999999999999988888889999999999999998 3478999999999999999
Q ss_pred CC---CCCCCCCCCCeeecccccccccc
Q 017047 331 KG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 331 s~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
+. ..|..+.+|+.|++.+|+|..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVP 116 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeC
Confidence 94 45789999999999999998653
No 31
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=2.7e-12 Score=119.48 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=86.4
Q ss_pred hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD 324 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld 324 (378)
+....+...+++.+|+|..+|. ...+..|++|+|++|+|..++ .+..+++|+.|+|++|+|..++.|..+++|++|+
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 162 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEE
Confidence 4445566777788888888775 556788888888888888874 4666788888888888888888888888899999
Q ss_pred CCCCCCCC-CCCCCCCCCCeeeccccccccccc
Q 017047 325 LSFNDFKG-PGFEPLENCKALQFCSNCILLETK 356 (378)
Q Consensus 325 LS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~~ 356 (378)
|++|+|+. ..+..+.+|+.|++.+|.|+.+..
T Consensus 163 L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 163 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred ccCCccccchhhcCCCccCEEECCCCcCCCChh
Confidence 99998884 447888889999999998876543
No 32
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.34 E-value=7.5e-12 Score=114.13 Aligned_cols=108 Identities=22% Similarity=0.188 Sum_probs=88.3
Q ss_pred ccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEE
Q 017047 247 GQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVL 323 (378)
Q Consensus 247 ~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~L 323 (378)
...+...+++.+|+|..+|... ..+.+|++|+|++|+|..++...|..+++|+.|+|++|+|..+ ..|..+++|++|
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 4456677788888888887654 4678899999999999988887788788999999999999888 357888999999
Q ss_pred eCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 324 DLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 324 dLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|++|+|+. ..|..+.+|+.|++.+|.|...
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999998883 4577888899999999988754
No 33
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=1.8e-12 Score=113.29 Aligned_cols=108 Identities=16% Similarity=0.091 Sum_probs=78.9
Q ss_pred ccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEe
Q 017047 247 GQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLD 324 (378)
Q Consensus 247 ~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~Ld 324 (378)
...+...+++.+|.+..++ .+..+.+|++|+|++|+|.......|..+++|++|+|++|+|... ..|..+++|++|+
T Consensus 64 ~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 64 YAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp GCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred cCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 3345556667777666655 345677788888888888875555677778888888888888763 6677888888888
Q ss_pred CCCCC-CC-CCCCCCCCCCCeeecccccccccc
Q 017047 325 LSFND-FK-GPGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 325 LS~N~-Ls-~~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
|++|. ++ ...|..+.+|+.|++.+|+|..+.
T Consensus 143 L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 143 LSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp CCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT
T ss_pred ccCCCCccccHhhcCCCCCCEEECCCCCCcChH
Confidence 88887 66 366777788888888888887654
No 34
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.2e-12 Score=112.37 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=80.7
Q ss_pred hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-cc-CCCCCCCcE
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EG-IEILTRVKV 322 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~-f~~LtnLq~ 322 (378)
+....+...+++.+|+|..+|.......+|++|||++|+|..+ ..|..+++|++|+|++|+|..+ +. |..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3344455667778888887765433344788888888888887 3577778888888888888887 34 478888888
Q ss_pred EeCCCCCCCC--C--CCCCCCCCCeeeccccccccc
Q 017047 323 LDLSFNDFKG--P--GFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 323 LdLS~N~Ls~--~--~f~~L~nLk~LdLsnNrIs~i 354 (378)
|+|++|+|+. . .|..+.+|+.|++.+|.|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc
Confidence 8888888873 2 577788888888888888754
No 35
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=2.7e-12 Score=112.14 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=91.8
Q ss_pred chhccccccccccCCCceee-cCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCC-CCCcccCCCCCCCc
Q 017047 244 NLSGQRRAGTPQSKDSRFIV-LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM-LSTLEGIEILTRVK 321 (378)
Q Consensus 244 sL~~~~~~~T~dlrdnrfs~-LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~Nk-Ls~L~~f~~LtnLq 321 (378)
.+....+...+++.+|+|.. .|..+..+.+|++|+|++|+|.......|..+++|++|+|++|. |..++.|..+++|+
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~ 162 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELK 162 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCC
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCC
Confidence 34445566777888888876 56666788999999999999998666678888999999999998 88888899999999
Q ss_pred EEeCCCCCCCC-CCCCCCCCCCeeecccccccc
Q 017047 322 VLDLSFNDFKG-PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 322 ~LdLS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~ 353 (378)
+|+|++|+|+. ..+..+.+|+.|++.+|+|..
T Consensus 163 ~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 163 SLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred EEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence 99999999994 688899999999999999863
No 36
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=3.7e-12 Score=121.54 Aligned_cols=104 Identities=20% Similarity=0.132 Sum_probs=89.4
Q ss_pred ccccccCCCceeecCcccc--cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047 251 AGTPQSKDSRFIVLPQVEI--KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS 326 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP~l~~--KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS 326 (378)
...+++.+|+|..++...+ .+.+|+.|+|++|+|..+++..|..+++|++|+|++|+|..+ ..|..+.+|++|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 4567888899998887654 688899999999999999888888889999999999999888 458899999999999
Q ss_pred CCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 327 FNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 327 ~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|+. ..|..|.+|+.|+|.+|+|..+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence 999983 6788899999999999998865
No 37
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.31 E-value=6.3e-12 Score=117.70 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=79.2
Q ss_pred hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD 324 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld 324 (378)
+....+...+++.+|+|..++ .+..+.+|++|+|++|+|..++. +..+++|+.|+|++|+|..++.+..+++|++|+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 157 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEE
T ss_pred HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCccccCCCCccEEE
Confidence 344455666777777777766 34567777788888888777764 666777888888888887776677788888888
Q ss_pred CCCCCCCC-CCCCCCCCCCeeeccccccccccc
Q 017047 325 LSFNDFKG-PGFEPLENCKALQFCSNCILLETK 356 (378)
Q Consensus 325 LS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~~ 356 (378)
|++|+|+. ..|..+.+|+.|++.+|+|..+..
T Consensus 158 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred ccCCcCCCChhhcCCCCCCEEECCCCccCcChh
Confidence 88888873 447777888888888888776543
No 38
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=7.3e-12 Score=116.59 Aligned_cols=126 Identities=18% Similarity=0.159 Sum_probs=97.1
Q ss_pred cccccCCCCcccccccc---cchhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEE
Q 017047 226 VSSGLRNGSLSSSLDRS---SNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVY 302 (378)
Q Consensus 226 ~s~~l~~~~l~~~l~rL---~sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~Ld 302 (378)
+..+.+..+|...-+++ ..+....+...+++.+|+|..++. +..+.+|+.|+|++|+|..+. .+..+++|+.|+
T Consensus 86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~ 162 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLS 162 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEE
T ss_pred cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChh-hcCCCCCCEEEccCCcCCcch--hhccCCCCCEEE
Confidence 44444444444433333 334555667788889998888853 557888999999999999883 577778999999
Q ss_pred cCCCCCCCcccCCCCCCCcEEeCCCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047 303 LRDNMLSTLEGIEILTRVKVLDLSFNDFK-GPGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 303 Ls~NkLs~L~~f~~LtnLq~LdLS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i 354 (378)
|++|+|..+..+..+++|+.|+|++|.|+ ...+..+.+|+.|++.+|.|...
T Consensus 163 L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 163 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEECC
T ss_pred ccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccCC
Confidence 99999998855889999999999999998 46688889999999999988753
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.30 E-value=1.5e-11 Score=114.62 Aligned_cols=110 Identities=22% Similarity=0.155 Sum_probs=95.6
Q ss_pred cccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEe
Q 017047 248 QRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLD 324 (378)
Q Consensus 248 ~~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~Ld 324 (378)
..+...+++.+|+|..+|.. +..+.+|+.|+|++|+|..+++..|..+++|+.|+|++|+|..+ ..|..+++|++|+
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 34566788999999999854 45789999999999999999998888889999999999999999 3468899999999
Q ss_pred CCCCCCC-C-CCCCCCCCCCeeecccccccccccc
Q 017047 325 LSFNDFK-G-PGFEPLENCKALQFCSNCILLETKL 357 (378)
Q Consensus 325 LS~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i~~L 357 (378)
|++|+|+ . ..+..+.+|+.|++.+|.+.+...+
T Consensus 179 L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCCCcCCccChhhcccccCCeEEeCCCCccCcCcc
Confidence 9999999 3 6677788999999999999865443
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=1.4e-11 Score=112.36 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=43.0
Q ss_pred cccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCC
Q 017047 252 GTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFN 328 (378)
Q Consensus 252 ~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N 328 (378)
..+++.+|+|..+|.. +..+.+|+.|+|++|+|..++...|..+++|+.|+|++|.|.++ ..|..+++|+.|+|++|
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 3334444444444432 12334444444444444444443344344444444444444443 33444444444444444
Q ss_pred CCCC---CCCCCCCCCCeeeccccccc
Q 017047 329 DFKG---PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 329 ~Ls~---~~f~~L~nLk~LdLsnNrIs 352 (378)
+|+. ..|..+.+|+.|++.+|.|.
T Consensus 212 ~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 212 NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 4442 12344444444444444444
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=1.3e-11 Score=112.64 Aligned_cols=110 Identities=20% Similarity=0.199 Sum_probs=87.7
Q ss_pred hhccccccccccCCCc-eeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCC
Q 017047 245 LSGQRRAGTPQSKDSR-FIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRV 320 (378)
Q Consensus 245 L~~~~~~~T~dlrdnr-fs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnL 320 (378)
|....+...+++.+|+ +..+ |..+..+.+|++|+|++|+|..+.+..|..+++|++|+|++|.|..+ ..|..+++|
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 155 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc
Confidence 3444566777888886 7777 44455778899999999999888777788788899999999998888 347888999
Q ss_pred cEEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 321 KVLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 321 q~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
++|+|++|+|+. ..|..+.+|+.|++.+|.|..+
T Consensus 156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 999999998883 4588888999999999988755
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.28 E-value=8.1e-12 Score=116.96 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=65.0
Q ss_pred hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeC
Q 017047 246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDL 325 (378)
Q Consensus 246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdL 325 (378)
....+...+++.+|+|..++. ...+.+|+.|+|++|+|..+++ +..+++|+.|+|++|+|..+..+..+++|++|+|
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 202 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLASLPNLIEVHL 202 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred cCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEc
Confidence 333445555566666666554 4455666666666666666554 5555666666666666666655666666666666
Q ss_pred CCCCCCC-CCCCCCCCCCeeecccccccc
Q 017047 326 SFNDFKG-PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 326 S~N~Ls~-~~f~~L~nLk~LdLsnNrIs~ 353 (378)
++|+|+. ..+..+.+|+.|++.+|.|+.
T Consensus 203 ~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 203 KNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred cCCccCccccccCCCCCCEEEccCCeeec
Confidence 6666662 445666666666766666654
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.28 E-value=1.7e-11 Score=111.29 Aligned_cols=110 Identities=18% Similarity=0.125 Sum_probs=76.2
Q ss_pred hhccccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
|....+...+++.+|+|..++.. +..+.+|++|+|++|+|..+++..|..+++|++|+|.+|.|..+ ..|..+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 33445566667777777776653 34567777777777777777766666677777777777777776 2467777777
Q ss_pred EEeCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFKG----PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|++|+|+. ..|..+.+|+.|++.+|+|..+
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred EEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 77777777762 3466677777777777777654
No 44
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=3.2e-12 Score=108.22 Aligned_cols=108 Identities=19% Similarity=0.080 Sum_probs=91.6
Q ss_pred hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcE
Q 017047 246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKV 322 (378)
Q Consensus 246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~ 322 (378)
....+...+++.+|+|..+ ..+..+..|++|+|++|+|....+..+..+++|++|+|++|.|..+ ..|..+++|++
T Consensus 46 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence 3345566788888888888 5566788999999999999996555666679999999999999997 57889999999
Q ss_pred EeCCCCCCCC--C----CCCCCCCCCeeeccccccccc
Q 017047 323 LDLSFNDFKG--P----GFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 323 LdLS~N~Ls~--~----~f~~L~nLk~LdLsnNrIs~i 354 (378)
|+|++|.|+. . .|..+.+|+.|++.+|.+..+
T Consensus 125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 9999999994 3 588999999999999998755
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.28 E-value=1e-11 Score=120.80 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=97.2
Q ss_pred hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcE
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKV 322 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~ 322 (378)
|....+...+++.+|+|..+|. ...+.+|+.|||++|+|..+.+..|..+++|+.|+|.+|+|..+ ..|..+++|+.
T Consensus 181 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp TTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred hhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 4445667778889999999985 45788899999999999999888898899999999999999988 67899999999
Q ss_pred EeCCCCCCCC---CCCCCCCCCCeeeccccccccccccc
Q 017047 323 LDLSFNDFKG---PGFEPLENCKALQFCSNCILLETKLH 358 (378)
Q Consensus 323 LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L~ 358 (378)
|||++|+|+. ..|..+.+|+.|+|.+|.|.+...+.
T Consensus 260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred EECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence 9999999993 56788999999999999998665543
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.27 E-value=1.3e-11 Score=118.68 Aligned_cols=109 Identities=16% Similarity=0.084 Sum_probs=83.8
Q ss_pred ccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEE
Q 017047 247 GQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVL 323 (378)
Q Consensus 247 ~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~L 323 (378)
...+...+++.+|+|..++. .+..+..|++|+|++|+|..+.+..|..+++|++|+|++|+|..+ ..|..+++|++|
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 34456667777888877654 444677888888888888888777777778888888888888877 567888888888
Q ss_pred eCCCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047 324 DLSFNDFKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 324 dLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
+|++|+|+. ..|..+.+|+.|++.+|.|.+..
T Consensus 377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 888888883 45677888888888888887654
No 47
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.27 E-value=1.3e-11 Score=112.14 Aligned_cols=108 Identities=17% Similarity=0.107 Sum_probs=66.9
Q ss_pred ccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcE
Q 017047 247 GQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKV 322 (378)
Q Consensus 247 ~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~ 322 (378)
...+...+++.+|+|..++. .+.++..|++|+|++|+|..+....|..+++|++|+|++|.|..+ ..|..+++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence 34455566666666666653 334566677777777777766665566666777777777777652 45666677777
Q ss_pred EeCCCCCCCC---CCCCCCCCCC----eeeccccccccc
Q 017047 323 LDLSFNDFKG---PGFEPLENCK----ALQFCSNCILLE 354 (378)
Q Consensus 323 LdLS~N~Ls~---~~f~~L~nLk----~LdLsnNrIs~i 354 (378)
|+|++|+|+. ..|..+.+|+ .|++.+|.|..+
T Consensus 154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~ 192 (276)
T 2z62_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (276)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred EECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc
Confidence 7777777662 3344444444 666777766543
No 48
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=1e-11 Score=128.90 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=81.0
Q ss_pred hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD 324 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld 324 (378)
|....++..+++.+|+|..+| .+..+..|+.|+|++|+|..++ .+..|++|+.|+|++|.|..+..|..|.+|+.|+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 159 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEE
T ss_pred hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCchhhcccCCCCEEE
Confidence 444555666777777777766 3456777888888888888764 3666678888888888888877778888888888
Q ss_pred CCCCCCCC-CCCCCCCCCCeeeccccccccccc
Q 017047 325 LSFNDFKG-PGFEPLENCKALQFCSNCILLETK 356 (378)
Q Consensus 325 LS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~~ 356 (378)
|++|+|.. ..|..|.+|+.|+|.+|+|..+..
T Consensus 160 Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~ 192 (605)
T 1m9s_A 160 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 192 (605)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CcCCcCCCchhhccCCCCCEEECcCCCCCCChH
Confidence 88888883 347778888888888888876533
No 49
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=3.5e-12 Score=109.56 Aligned_cols=104 Identities=14% Similarity=0.046 Sum_probs=90.6
Q ss_pred cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcc---cCCCCCCCcEEeCC
Q 017047 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE---GIEILTRVKVLDLS 326 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~---~f~~LtnLq~LdLS 326 (378)
+...+++.+|+|..+ ..+..+..|++|+|++|+|..+++..|..+++|++|+|++|+|..++ .|..+++|+.|+|+
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 677788999999888 45567889999999999999998776677899999999999999883 68899999999999
Q ss_pred CCCCC-CCC-----CCCCCCCCeeeccccccccc
Q 017047 327 FNDFK-GPG-----FEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 327 ~N~Ls-~~~-----f~~L~nLk~LdLsnNrIs~i 354 (378)
+|.|. .+. +..+.+|+.|++.+|.+...
T Consensus 122 ~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp SSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 99998 333 78899999999999988643
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.26 E-value=1.8e-11 Score=112.60 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=93.2
Q ss_pred ccccccccccCCCceee--cCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcE
Q 017047 247 GQRRAGTPQSKDSRFIV--LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKV 322 (378)
Q Consensus 247 ~~~~~~T~dlrdnrfs~--LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~ 322 (378)
...+...+++.+|+|.. +|..+..+.+|++|+|++|+|..+.+..|..+++|+.|+|++|.|..+ ..|..+++|++
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 34556677888888875 787777889999999999999999887888889999999999999988 46888999999
Q ss_pred EeCCCCCCCC---CCCCCC-CCCCeeeccccccccccc
Q 017047 323 LDLSFNDFKG---PGFEPL-ENCKALQFCSNCILLETK 356 (378)
Q Consensus 323 LdLS~N~Ls~---~~f~~L-~nLk~LdLsnNrIs~i~~ 356 (378)
|||++|+|+. ..|..+ .+|+.|++.+|.|.....
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 9999999983 567777 489999999999986543
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.25 E-value=3.2e-11 Score=117.33 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=41.2
Q ss_pred ccccccCCCceeecCccc-ccCCCcceEEecC-CcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCC
Q 017047 251 AGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN 328 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSg-N~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N 328 (378)
...+++.+|+|..+|... ..+.+|+.|+|++ |.+..++...|..+++|++|+|++|.|..++.+..+.+|++|+|++|
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence 333444444444444322 1333344444433 23333333333334444444444444444444444444444444444
Q ss_pred CCCC---CCCCCCCCCCeeecccccc
Q 017047 329 DFKG---PGFEPLENCKALQFCSNCI 351 (378)
Q Consensus 329 ~Ls~---~~f~~L~nLk~LdLsnNrI 351 (378)
+|+. ..|..+.+|+.|++.+|+|
T Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 218 HLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ccCccChhhhccCccCCEEECCCCce
Confidence 4441 3333444444444444443
No 52
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=8.4e-12 Score=131.48 Aligned_cols=109 Identities=18% Similarity=0.071 Sum_probs=96.0
Q ss_pred hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEE
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVL 323 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~L 323 (378)
+....+...+++.+|+|..+|...+++..|+.|+|++|+|..|+. .|..+++|++|+|++|.|..+ ..|+.|.+|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 444566778899999999999988899999999999999998875 467779999999999999988 789999999999
Q ss_pred eCCCCCCC-C-CCCCCCCCCCeeeccccccccc
Q 017047 324 DLSFNDFK-G-PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 324 dLS~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|++|.|+ + ..|+.|.+|+.|+|.+|.|...
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 99999999 4 5699999999999999999854
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.24 E-value=2.1e-11 Score=119.03 Aligned_cols=113 Identities=13% Similarity=0.162 Sum_probs=96.5
Q ss_pred hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcE
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKV 322 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~ 322 (378)
|....+...+++.+|+|..+|. ...+.+|+.|+|++|+|..+.+..|..+++|+.|+|.+|+|..+ ..|..+++|+.
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence 4445567778888999998885 45688899999999999999888898899999999999999988 67899999999
Q ss_pred EeCCCCCCCC---CCCCCCCCCCeeeccccccccccccc
Q 017047 323 LDLSFNDFKG---PGFEPLENCKALQFCSNCILLETKLH 358 (378)
Q Consensus 323 LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~L~ 358 (378)
|+|++|+|+. ..|..+.+|+.|+|.+|.+.+...+.
T Consensus 271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp EECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred EECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 9999999993 56788999999999999988665543
No 54
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.23 E-value=3.6e-11 Score=114.44 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=80.7
Q ss_pred hccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-cc-CCCCCCCcE
Q 017047 246 SGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EG-IEILTRVKV 322 (378)
Q Consensus 246 ~~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~-f~~LtnLq~ 322 (378)
....+...+++.+|++..++. .+..+.+|++|+|++|+|..+++..|..+++|++|+|++|.|..+ .. |..+++|++
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 344566677777777777765 344677788888888888888777777778888888888888877 22 577888888
Q ss_pred EeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 323 LDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 323 LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
|+|++|.|+. ..|..+.+|+.|++.+|+|..+
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 8888888772 4577778888888888877654
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.23 E-value=3.1e-11 Score=112.35 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=64.3
Q ss_pred ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS 326 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS 326 (378)
.+...+++.+|+|..+|.... ..|++|+|++|+|..+.+..|..+++|+.|+|++|.|..+ ..|..+++|++|+|+
T Consensus 171 ~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred CCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence 344445556666666665433 4566666666666666555566666666666666666665 246666666666666
Q ss_pred CCCCC-C-CCCCCCCCCCeeeccccccccc
Q 017047 327 FNDFK-G-PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 327 ~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|+ . ..+..+.+|+.|++.+|+|+.+
T Consensus 249 ~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 249 NNKLVKVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp SSCCSSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCcCccCChhhccCCCcCEEECCCCcCCcc
Confidence 66666 2 4556666666666666666654
No 56
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.23 E-value=3.4e-11 Score=117.34 Aligned_cols=109 Identities=16% Similarity=0.101 Sum_probs=65.1
Q ss_pred hccccccccccCCCceeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcE
Q 017047 246 SGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKV 322 (378)
Q Consensus 246 ~~~~~~~T~dlrdnrfs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~ 322 (378)
....+...+++.+|.|..+ |..+..+.+|++|+|++|+|..++...|..+++|++|+|++|+|..+ ..|..+.+|++
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 3344455556666666555 33344556666666666666666655555556666666666666655 34566666666
Q ss_pred EeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 323 LDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 323 LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
|+|++|.|.. ..|..+.+|+.|++.+|.|..+
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 6666666662 4566666666666666666543
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.22 E-value=3.1e-11 Score=117.78 Aligned_cols=107 Identities=22% Similarity=0.242 Sum_probs=64.8
Q ss_pred cccccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCC-CCCCCc--ccCCCCCCCcEE
Q 017047 248 QRRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRD-NMLSTL--EGIEILTRVKVL 323 (378)
Q Consensus 248 ~~~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~-NkLs~L--~~f~~LtnLq~L 323 (378)
..+...+++.+|+|..+|...+ .+.+|++|+|++|+|..++...|..+++|+.|+|.+ |.+..+ ..|..+.+|++|
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 3444455555555555554422 355566666666666655555555556666666655 344444 346667777777
Q ss_pred eCCCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047 324 DLSFNDFK-GPGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 324 dLS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|++|+|+ .+.+..+.+|+.|++.+|.|..+
T Consensus 202 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp ECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred ECCCCcccccccccccccccEEECcCCcCccc
Confidence 77777777 36677777777777777777654
No 58
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.22 E-value=3.4e-11 Score=124.99 Aligned_cols=126 Identities=18% Similarity=0.158 Sum_probs=97.1
Q ss_pred cccccCCCCcccccccc---cchhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEE
Q 017047 226 VSSGLRNGSLSSSLDRS---SNLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVY 302 (378)
Q Consensus 226 ~s~~l~~~~l~~~l~rL---~sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~Ld 302 (378)
+..+.+...|...-++| ..|....++..+++.+|+|..++. +..+.+|+.|+|++|+|..+. .|..|++|+.|+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ 159 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLS 159 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCG--GGGSCTTCSEEE
T ss_pred hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCch--hhcccCCCCEEE
Confidence 44444444444433333 334555667778888998888764 557888999999999999883 577778999999
Q ss_pred cCCCCCCCcccCCCCCCCcEEeCCCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047 303 LRDNMLSTLEGIEILTRVKVLDLSFNDFK-GPGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 303 Ls~NkLs~L~~f~~LtnLq~LdLS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i 354 (378)
|++|.|..+..|..|++|+.|+|++|+|+ ...|..|.+|+.|+|.+|.|...
T Consensus 160 Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 160 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred CcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence 99999998855889999999999999998 47788889999999999988754
No 59
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.21 E-value=2.9e-11 Score=117.85 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=82.5
Q ss_pred hhccccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
|....+...+++.+|+|..+|... .++.+|++|||++|+|..+.+..|..+++|+.|+|.+|.|..+ ..|..+.+|+
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 344456667777788888777654 4677888888888888887777777778888888888888776 4677888888
Q ss_pred EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
.|+|++|+|+. ..|..+.+|+.|++.+|.|..+
T Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 88888888873 3467778888888888877654
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.21 E-value=3.4e-11 Score=120.26 Aligned_cols=110 Identities=17% Similarity=0.109 Sum_probs=82.0
Q ss_pred hhccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
|....+...+++.+|+|..++. .+.++.+|++|||++|+|..+.+..|..+++|++|+|++|.|..+ ..|..+.+|+
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 4455566667777777777744 345677888888888888888777777778888888888888777 4677888888
Q ss_pred EEeCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFKG----PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|++|.|.. ..|..|.+|++|++.+|+|..+
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 88888888772 3577788888888888877654
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.21 E-value=2.9e-11 Score=114.40 Aligned_cols=106 Identities=15% Similarity=0.004 Sum_probs=83.2
Q ss_pred cccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047 248 QRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL 325 (378)
Q Consensus 248 ~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL 325 (378)
..+...+++.+|+|..+|..+.++.+|++|+|++|+|..+++. |..+++|++|+|++|.+.+. ..|..+++|++|+|
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 4456667777888888888777888888888888888887764 66678888888888877665 56788888888888
Q ss_pred CCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 326 SFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
++|.+.. ..|..|.+|+.|++.+|.+...
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 8887773 5677888888888888877644
No 62
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.21 E-value=6.4e-11 Score=118.32 Aligned_cols=105 Identities=14% Similarity=0.058 Sum_probs=93.9
Q ss_pred ccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047 249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL 325 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL 325 (378)
.+...+++.+|++..++. .+.++.+|++|||++|+|..+++..|..+++|++|+|++|.|..+ ..|..|.+|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 456678899999998887 445789999999999999999888888899999999999999988 57999999999999
Q ss_pred CCCCCCC---CCCCCCCCCCeeecccccccc
Q 017047 326 SFNDFKG---PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~ 353 (378)
++|+|+. ..|+.+.+|+.|++.+|.|..
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 142 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHS 142 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccc
Confidence 9999983 578999999999999999975
No 63
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.21 E-value=5.8e-11 Score=114.21 Aligned_cols=110 Identities=20% Similarity=0.154 Sum_probs=73.0
Q ss_pred hhccccccccccCCCcee-ec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--cc--CCCCC
Q 017047 245 LSGQRRAGTPQSKDSRFI-VL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EG--IEILT 318 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs-~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~--f~~Lt 318 (378)
|....+...+++.+|.+. .+ |..+..+.+|++|||++|+|..+.+..|..+++|++|+|++|.|.+. .. |..++
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 334445556666666664 34 33344667777777777777777666677677777777777777762 22 67777
Q ss_pred CCcEEeCCCCCCCC--CC--CCCCCCCCeeeccccccccc
Q 017047 319 RVKVLDLSFNDFKG--PG--FEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 319 nLq~LdLS~N~Ls~--~~--f~~L~nLk~LdLsnNrIs~i 354 (378)
+|++|+|++|+|.. .. |..+.+|+.|++.+|+|...
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 77777777777773 22 66777777777777777654
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.20 E-value=1.4e-11 Score=109.90 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=58.9
Q ss_pred cccccccccCCCc-eeecCcc-cccCCCcceEEecC-CcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCc---
Q 017047 248 QRRAGTPQSKDSR-FIVLPQV-EIKAGDDVRLDLRG-HRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVK--- 321 (378)
Q Consensus 248 ~~~~~T~dlrdnr-fs~LP~l-~~KlssL~~LDLSg-N~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq--- 321 (378)
..+...+++.+|+ +..++.. +..+.+|++|+|++ |+|..+++..|..+++|++|+|.+|.|.+++.|..+.+|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~ 133 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF 133 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEE
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccccccc
Confidence 3344455555554 5555542 23455666666665 6666666555555566666666666666554455555555
Q ss_pred EEeCCCC-CCCC---CCCCCCCCCC-eeeccccccc
Q 017047 322 VLDLSFN-DFKG---PGFEPLENCK-ALQFCSNCIL 352 (378)
Q Consensus 322 ~LdLS~N-~Ls~---~~f~~L~nLk-~LdLsnNrIs 352 (378)
+|+|++| +|+. ..|..+.+|+ .|++.+|.|.
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 6666666 5552 3355555565 6666655554
No 65
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.20 E-value=3e-11 Score=112.47 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=73.8
Q ss_pred hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeC
Q 017047 246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDL 325 (378)
Q Consensus 246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdL 325 (378)
....+...+++.+|++..++. ...+.+|++|+|++|.|..++ .+..+++|++|+|++|.|..++.+..+++|+.|+|
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL 294 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred hcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence 334455566667777777665 455667777777777777764 35566777777777777777766777777777777
Q ss_pred CCCCCCC---CCCCCCCCCCeeeccccccccccc
Q 017047 326 SFNDFKG---PGFEPLENCKALQFCSNCILLETK 356 (378)
Q Consensus 326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~~ 356 (378)
++|.|.. ..|..+.+|+.|++.+|.|..+..
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 7777762 445667777777777777776544
No 66
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=2.2e-11 Score=125.10 Aligned_cols=103 Identities=22% Similarity=0.208 Sum_probs=92.9
Q ss_pred ccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCC
Q 017047 251 AGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDF 330 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~L 330 (378)
...+++.+|+|..+|. +..+.+|+.|+|++|+|..++. .|..+++|+.|+|++|.|++++.|..|++|+.|+|++|+|
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence 4568899999999997 7789999999999999998876 5777899999999999999999999999999999999999
Q ss_pred CC----CCCCCCCCCCeeecccccccccc
Q 017047 331 KG----PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 331 s~----~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
+. ..|..|.+|+.|+|.+|.|+...
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 93 36788999999999999998764
No 67
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.20 E-value=2.9e-11 Score=113.23 Aligned_cols=104 Identities=17% Similarity=0.128 Sum_probs=83.1
Q ss_pred cccccccCCCcee-ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCC
Q 017047 250 RAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSF 327 (378)
Q Consensus 250 ~~~T~dlrdnrfs-~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~ 327 (378)
+...+++.+|+|. .+|..+..+. |+.|+|++|+|.++.+..|..+++|+.|+|++|.|.+. +.+..+++|++|+|++
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS
T ss_pred cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcC
Confidence 4566777788887 5666666665 88888888888887777788888899999999988876 6788888999999999
Q ss_pred CCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 328 NDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 328 N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
|+|++ ..|..+.+|+.|++.+|+|+..
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 99882 5677888899999999988743
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.19 E-value=1.3e-11 Score=110.14 Aligned_cols=105 Identities=12% Similarity=0.157 Sum_probs=92.0
Q ss_pred cccccccCCCceeecCcc-cccCCCcceEEecCCc-CCccCccccCCCCCccEEEcCC-CCCCCc--ccCCCCCCCcEEe
Q 017047 250 RAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHR-VRSLIASGLNLQPNLEFVYLRD-NMLSTL--EGIEILTRVKVLD 324 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~-LssL~~s~f~lL~nLe~LdLs~-NkLs~L--~~f~~LtnLq~Ld 324 (378)
+...+++.+|+|..+|.. +..+.+|++|+|++|+ |+.+++..|..+++|++|+|++ |.|..+ ..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 556788889999999884 4478999999999997 9999988888889999999998 999988 4688999999999
Q ss_pred CCCCCCCC-CCCCCCCCCC---eeecccc-ccccc
Q 017047 325 LSFNDFKG-PGFEPLENCK---ALQFCSN-CILLE 354 (378)
Q Consensus 325 LS~N~Ls~-~~f~~L~nLk---~LdLsnN-rIs~i 354 (378)
|++|+|+. +.|..+.+|+ .|++.+| .|..+
T Consensus 112 l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i 146 (239)
T 2xwt_C 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146 (239)
T ss_dssp EEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEE
T ss_pred CCCCCCccccccccccccccccEEECCCCcchhhc
Confidence 99999994 6688889998 9999999 87654
No 69
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.19 E-value=6.2e-11 Score=120.37 Aligned_cols=109 Identities=19% Similarity=0.154 Sum_probs=84.2
Q ss_pred hccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-c-cCCCCCCCcE
Q 017047 246 SGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-E-GIEILTRVKV 322 (378)
Q Consensus 246 ~~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~-~f~~LtnLq~ 322 (378)
....+...+++.+|.|..++. .+..+..|++|+|++|.|..+++..|..+++|++|+|++|.|..+ + .|..+++|++
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 334566777888888887775 445677888888888888888877777778888888888888887 3 3678888888
Q ss_pred EeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 323 LDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 323 LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
|+|++|.|+. ..|..|.+|+.|++.+|.|..+
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 8888888883 4577888888888888887754
No 70
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.18 E-value=6.7e-11 Score=118.16 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=81.2
Q ss_pred hhccccccccccCCCceeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
|....+..++++.+|++..+ |..+.++.+|++|+|++|+|..+.+..|..+++|++|+|++|+|..+ ..|..+++|+
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence 44455666777777777765 44455777888888888888877777777778888888888888776 5677788888
Q ss_pred EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|++|+|.. ..+..+.+|+.|++.+|.|...
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 88888888773 5555677888888888877644
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.18 E-value=5e-11 Score=112.22 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=48.8
Q ss_pred ccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcc---cCCCCCCCcEEe
Q 017047 249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE---GIEILTRVKVLD 324 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~---~f~~LtnLq~Ld 324 (378)
.+...+++.+|+|..++. .+..+.+|++|||++|+|..++...|..+++|++|+|++|+|..++ .|..+++|++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 334444444444444432 2334444555555555555544443444455555555555555441 244455555555
Q ss_pred CCCCC-CCC---CCCCCCCCCCeeeccccccc
Q 017047 325 LSFND-FKG---PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 325 LS~N~-Ls~---~~f~~L~nLk~LdLsnNrIs 352 (378)
|++|+ +.. ..|..+.+|+.|++.+|.|.
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 55542 331 34444555555555555544
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.18 E-value=3.9e-11 Score=117.88 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=90.6
Q ss_pred ccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCC
Q 017047 249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSF 327 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~ 327 (378)
.+...+++.+|+|..++. .+..+.+|++|+|++|+|..+.+..|..+++|++|+|++|+|..++.. .+.+|++|+|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~ 99 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSF 99 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCS
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccC
Confidence 567778899999988874 456788999999999999999887888889999999999999988555 899999999999
Q ss_pred CCCCC----CCCCCCCCCCeeecccccccc
Q 017047 328 NDFKG----PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 328 N~Ls~----~~f~~L~nLk~LdLsnNrIs~ 353 (378)
|+|+. ..|..|.+|+.|++.+|.|..
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred CccccccchhhhccCCcceEEEecCcccch
Confidence 99983 468899999999999999875
No 73
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.18 E-value=5.6e-11 Score=113.12 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=94.4
Q ss_pred ccccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047 249 RRAGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL 325 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL 325 (378)
.+...+++.++.+..+|... ..+.+|++|+|++|.|..+++..|..+++|++|+|++|.|..+ ..|..+++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 44566788899999999875 4688999999999999999988899999999999999999998 45899999999999
Q ss_pred CCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047 326 SFNDFKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
++|+|+. ..|..+.+|+.|++.+|.|..+.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 9999993 34789999999999999997653
No 74
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.18 E-value=5e-11 Score=109.58 Aligned_cols=109 Identities=18% Similarity=0.187 Sum_probs=77.4
Q ss_pred hccccccccccCCCceeecCcc-cccCCCcceEEecCCcCCc-cCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 246 SGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRS-LIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 246 ~~~~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~Lss-L~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
....+...+++.+|++..++.. +..+..|++|+|++|.|.. +.+..|..+++|++|+|++|.|..+ ..|..+++|+
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 3344566677777777665443 3456778888888888775 3444566677888888888888776 4677788888
Q ss_pred EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|++|+|+. ..|..+.+|+.|++.+|+|...
T Consensus 203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred EEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 88888888873 3567778888888888887654
No 75
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.18 E-value=6.2e-11 Score=118.42 Aligned_cols=105 Identities=13% Similarity=0.018 Sum_probs=94.3
Q ss_pred cccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047 250 RAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS 326 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS 326 (378)
....+++.+|+|..++. .+.++.+|++|||++|+|..+.+..|..+++|++|+|++|.|..+ ..|..+++|++|+|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 45778899999999854 556889999999999999999888899999999999999999987 578999999999999
Q ss_pred CCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 327 FNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 327 ~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|+. ..|..+.+|++|++.+|+|..+
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred ccCcccCCcchhccCCcccEEECCCCccccc
Confidence 999994 6789999999999999999865
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.17 E-value=6.3e-11 Score=110.10 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=80.2
Q ss_pred ccccccccccCCCceeecCcc----cccCCCcceEEecCCcCCccCccccCCC---CCccEEEcCCCCCCCc-ccCCCCC
Q 017047 247 GQRRAGTPQSKDSRFIVLPQV----EIKAGDDVRLDLRGHRVRSLIASGLNLQ---PNLEFVYLRDNMLSTL-EGIEILT 318 (378)
Q Consensus 247 ~~~~~~T~dlrdnrfs~LP~l----~~KlssL~~LDLSgN~LssL~~s~f~lL---~nLe~LdLs~NkLs~L-~~f~~Lt 318 (378)
...+...+++.+|+|..++.. ...+..|++|||++|+|..+.+..+..+ ++|++|+|++|+|+.+ ..+. +
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~ 272 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--A 272 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--S
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--C
Confidence 344577788888888777763 3456888899999999988744444433 6899999999998887 4443 7
Q ss_pred CCcEEeCCCCCCCC-CCCCCCCCCCeeecccccccc
Q 017047 319 RVKVLDLSFNDFKG-PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 319 nLq~LdLS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~ 353 (378)
+|++|||++|+|+. +.+..+.+|+.|++.+|.|+.
T Consensus 273 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 273 KLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred CCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 88999999999885 667888889999999998864
No 77
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.17 E-value=4.9e-11 Score=124.80 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=54.2
Q ss_pred CCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCCC---CCCCCCCCCCeeec
Q 017047 272 GDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKG---PGFEPLENCKALQF 346 (378)
Q Consensus 272 ssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~---~~f~~L~nLk~LdL 346 (378)
..|+.|||++|+|.+..+..|..++.|+.|+|++|+|++. ..|+.|++|+.|||++|+|++ ..|..|..|+.|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 3455666666666665555566666677777777777644 556677777777777777763 45666667777777
Q ss_pred cccccccc
Q 017047 347 CSNCILLE 354 (378)
Q Consensus 347 snNrIs~i 354 (378)
++|+|++.
T Consensus 712 s~N~l~g~ 719 (768)
T 3rgz_A 712 SNNNLSGP 719 (768)
T ss_dssp CSSEEEEE
T ss_pred cCCccccc
Confidence 77776643
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.16 E-value=7.3e-11 Score=116.22 Aligned_cols=110 Identities=19% Similarity=0.148 Sum_probs=86.8
Q ss_pred hhccccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcc--cCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~--~f~~LtnLq 321 (378)
|....+...+++.+|++..++.. +.++.+|++|+|++|+|..+++..|..+.+|++|+|++|.|..++ .|..|.+|+
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 44556677788888888887654 456788888888888888888777888888888888888888873 588888888
Q ss_pred EEeCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFKG----PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|++|.|+. ..|..|.+|+.|++.+|.|..+
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 88888888873 4577788888888888887654
No 79
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.16 E-value=1.1e-10 Score=118.50 Aligned_cols=110 Identities=18% Similarity=0.113 Sum_probs=72.6
Q ss_pred hhccccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
|....+...+++.+|+|..++. .+.++..|++|+|++|+|..+++..|..+.+|++|+|++|+|..+ ..|..|++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 4444555666666666666543 334667777777777777777766666667777777777777766 3567777777
Q ss_pred EEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|++|.|+. ..|..+.+|+.|++.+|.|...
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 77777777763 4456677777777777766543
No 80
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=2e-11 Score=101.36 Aligned_cols=99 Identities=20% Similarity=0.167 Sum_probs=83.5
Q ss_pred ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeC
Q 017047 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDL 325 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdL 325 (378)
.+...+++.+|+|..+ ..+..+..|++|+|++|+|....+..+..+++|++|+|++|.|..+ ..|..+++|++|+|
T Consensus 42 ~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 42 EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 4566678888888888 5566788999999999999996555666679999999999999986 67899999999999
Q ss_pred CCCCCCC-C-----CCCCCCCCCeeeccc
Q 017047 326 SFNDFKG-P-----GFEPLENCKALQFCS 348 (378)
Q Consensus 326 S~N~Ls~-~-----~f~~L~nLk~LdLsn 348 (378)
++|.|+. . .|..+.+|+.|++.+
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999994 3 478889999998864
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.16 E-value=1.3e-10 Score=114.41 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=92.7
Q ss_pred cccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCC
Q 017047 250 RAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLS 326 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS 326 (378)
....+++.+|+|..++.. +..+.+|++|||++|+|..+++..|..+++|++|+|++|.|..+ ..|..+.+|++|+|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 456688899999888764 45789999999999999999988899899999999999999988 579999999999999
Q ss_pred CCCCCC---CCCCCCCCCCeeecccccccc
Q 017047 327 FNDFKG---PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 327 ~N~Ls~---~~f~~L~nLk~LdLsnNrIs~ 353 (378)
+|+|+. ..|..|.+|++|++.+|.|..
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 138 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCC
T ss_pred ccccccCCCccccccccccEEecCCCccce
Confidence 999993 358999999999999999875
No 82
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.15 E-value=4.4e-11 Score=112.62 Aligned_cols=105 Identities=17% Similarity=0.141 Sum_probs=91.6
Q ss_pred cccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-c-cCCCCCCCcEEeCC
Q 017047 250 RAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-E-GIEILTRVKVLDLS 326 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~-~f~~LtnLq~LdLS 326 (378)
+...+++.+|+|..+|. .+.++.+|++|+|++|+|..+.+..|..+++|++|+|++|+|..+ . .|..+++|++|+|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56778899999999887 456789999999999999999888888889999999999999998 3 48999999999999
Q ss_pred CCCCCC----CCCCCCCCCCeeeccccc-cccc
Q 017047 327 FNDFKG----PGFEPLENCKALQFCSNC-ILLE 354 (378)
Q Consensus 327 ~N~Ls~----~~f~~L~nLk~LdLsnNr-Is~i 354 (378)
+|+|+. ..|..+.+|+.|++.+|. +..+
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence 999993 258899999999999984 5543
No 83
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.15 E-value=2.7e-11 Score=114.61 Aligned_cols=104 Identities=26% Similarity=0.207 Sum_probs=74.4
Q ss_pred ccccccccCC-CceeecCccccc---------CCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCC
Q 017047 249 RRAGTPQSKD-SRFIVLPQVEIK---------AGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEIL 317 (378)
Q Consensus 249 ~~~~T~dlrd-nrfs~LP~l~~K---------lssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~L 317 (378)
.+...+++.+ +.+..+|..+.. +..|++|+|++|+|..++.. |..+++|++|+|++|.|.++ +.|..+
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCchhhccC
Confidence 3444555555 334445554432 66777777777777766643 66668888888888888888 678888
Q ss_pred CCCcEEeCCCCCCCC---CCCCCCCCCCeeecccccccc
Q 017047 318 TRVKVLDLSFNDFKG---PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 318 tnLq~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~ 353 (378)
++|++|+|++|++.. ..|..+.+|+.|++.+|.+..
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 888888888888773 567888888888888887653
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.15 E-value=4.1e-11 Score=117.79 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=89.0
Q ss_pred chhccccccccccCCCceeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCC
Q 017047 244 NLSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTR 319 (378)
Q Consensus 244 sL~~~~~~~T~dlrdnrfs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~Ltn 319 (378)
.|....+..++++.+|+|..+ |..+..+.+|++|||++|+|..++.. .+++|++|+|++|+|.++ ..|..+++
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCc
Confidence 355566788889999999887 55666889999999999999988864 568999999999999874 57899999
Q ss_pred CcEEeCCCCCCCCCCCCCCCCC--Ceeecccccc
Q 017047 320 VKVLDLSFNDFKGPGFEPLENC--KALQFCSNCI 351 (378)
Q Consensus 320 Lq~LdLS~N~Ls~~~f~~L~nL--k~LdLsnNrI 351 (378)
|++|+|++|+|+...|..+.+| +.|++.+|.|
T Consensus 117 L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTT
T ss_pred ceEEEecCcccchhhccccccceeeEEEeecccc
Confidence 9999999999986667777788 9999999988
No 85
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.15 E-value=1.4e-10 Score=114.30 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=69.8
Q ss_pred hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCcccc-----------------CCCCCccEEEcCCCCC
Q 017047 246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGL-----------------NLQPNLEFVYLRDNML 308 (378)
Q Consensus 246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f-----------------~lL~nLe~LdLs~NkL 308 (378)
....+...+++.+|+|..+|.....+..|++|+|++|+|..++...+ ..+++|++|+|++|+|
T Consensus 384 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL 463 (549)
T ss_dssp GGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred hcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCcc
Confidence 34455666777788888777766666777777777777766553211 1345666666666666
Q ss_pred CCcccCCCCCCCcEEeCCCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 309 STLEGIEILTRVKVLDLSFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 309 s~L~~f~~LtnLq~LdLS~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
..++.+..+++|++|||++|+|+. ..|..+.+|+.|++.+|.+.+.
T Consensus 464 ~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 464 KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp SSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 666555566667777777776663 2356666777777777766544
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.14 E-value=1.3e-10 Score=116.31 Aligned_cols=104 Identities=22% Similarity=0.218 Sum_probs=88.1
Q ss_pred ccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCC
Q 017047 249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSF 327 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~ 327 (378)
.+...+++.+|+|..+|. .+..+.+|++|+|++|+|+.+.+..|..+++|++|+|++|+|..++.. .+.+|++|||++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~ 130 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSF 130 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCC
Confidence 466778888998988885 455788899999999999999888888889999999999999988554 899999999999
Q ss_pred CCCCC----CCCCCCCCCCeeecccccccc
Q 017047 328 NDFKG----PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 328 N~Ls~----~~f~~L~nLk~LdLsnNrIs~ 353 (378)
|+|+. ..|..|.+|+.|++.+|+|..
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCccccCchHhhcccCcccEEecCCCcccc
Confidence 99983 368889999999999999875
No 87
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.14 E-value=9e-11 Score=109.89 Aligned_cols=106 Identities=16% Similarity=0.051 Sum_probs=74.2
Q ss_pred ccccccccccCCCcee-ecCcccccCC-CcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcE
Q 017047 247 GQRRAGTPQSKDSRFI-VLPQVEIKAG-DDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKV 322 (378)
Q Consensus 247 ~~~~~~T~dlrdnrfs-~LP~l~~Kls-sL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~ 322 (378)
...+...+++.+|+|. .+|..+..+. .|++|+|++|+|.+..+..|..+. |++|+|++|.|.+. ..|..+++|++
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 3445556666777776 5666666665 677777777777755555555544 77777777777654 56777888888
Q ss_pred EeCCCCCCCC--CCCCCCCCCCeeecccccccc
Q 017047 323 LDLSFNDFKG--PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 323 LdLS~N~Ls~--~~f~~L~nLk~LdLsnNrIs~ 353 (378)
|+|++|+|++ ..+..+.+|++|++.+|+|..
T Consensus 226 L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp EECCSSEECCBGGGCCCCTTCCEEECCSSCCEE
T ss_pred EECCCCceeeecCcccccCCCCEEECcCCcccC
Confidence 8888888873 557777888888888888863
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.13 E-value=9.6e-11 Score=109.18 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=35.4
Q ss_pred CCcceEEecCCcCCccCc-cccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCCC-CCCCCCCCCCeeeccc
Q 017047 272 GDDVRLDLRGHRVRSLIA-SGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFKG-PGFEPLENCKALQFCS 348 (378)
Q Consensus 272 ssL~~LDLSgN~LssL~~-s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls~-~~f~~L~nLk~LdLsn 348 (378)
.+|++|||++|+|.++.+ ..+..+++|++|+|++|+|+.+ ..+. .+|++|||++|+|+. +.|..+.+|+.|++.+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKG 305 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTT
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccC
Confidence 444445555554444331 2233334455555555544444 2222 444555555555442 3344444445555555
Q ss_pred cccc
Q 017047 349 NCIL 352 (378)
Q Consensus 349 NrIs 352 (378)
|.|+
T Consensus 306 N~l~ 309 (312)
T 1wwl_A 306 NPFL 309 (312)
T ss_dssp CTTT
T ss_pred CCCC
Confidence 5444
No 89
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.13 E-value=2.1e-10 Score=106.68 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=49.8
Q ss_pred ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCC-CCCcccCCCCCCCcEEeCCC
Q 017047 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM-LSTLEGIEILTRVKVLDLSF 327 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~Nk-Ls~L~~f~~LtnLq~LdLS~ 327 (378)
.+..++++.+|+|..+|. +..+.+|++|+|++|+|..++. +..+++|+.|+|++|. +..+..+..+++|++|+|++
T Consensus 88 ~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 88 VKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE 164 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS
T ss_pred CcCCEEEccCCcccCchH-HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecC
Confidence 334444444444444432 3344445555555555544443 3344445555555542 22224445555555555555
Q ss_pred CCCCC-CCCCCCCCCCeeecccccccccc
Q 017047 328 NDFKG-PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 328 N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
|.+.. ..|..+.+|+.|++.+|.|..+.
T Consensus 165 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 165 SKVKDVTPIANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp SCCCCCGGGGGCTTCSEEECTTSCCCCCG
T ss_pred CCcCCchhhccCCCCCEEEccCCcccccc
Confidence 55552 33555556666666666655443
No 90
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.13 E-value=1.6e-10 Score=114.73 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=47.7
Q ss_pred ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCC
Q 017047 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN 328 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N 328 (378)
.+...+++.+|+|..+| +..+.+|++|+|++|+|.+++ +..+++|++|+|++|+|.+++ |..+++|++|+|++|
T Consensus 64 ~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARN 137 (457)
T ss_dssp TTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTS
T ss_pred CCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCC
Confidence 33444455555555443 334445555555555555542 344455555555555555543 455555555555555
Q ss_pred CCCCCCCCCCCCCCeeecccc
Q 017047 329 DFKGPGFEPLENCKALQFCSN 349 (378)
Q Consensus 329 ~Ls~~~f~~L~nLk~LdLsnN 349 (378)
+|+...+..+.+|+.|++.+|
T Consensus 138 ~l~~l~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 138 TLTEIDVSHNTQLTELDCHLN 158 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTC
T ss_pred ccceeccccCCcCCEEECCCC
Confidence 555333455555555555555
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.13 E-value=6.4e-11 Score=110.59 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=51.8
Q ss_pred ccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCC
Q 017047 251 AGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFN 328 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N 328 (378)
...+++.+|+|..++. .+..+..|+.|+|++|+|..+++..|..+++|+.|+|++|+|..+ ..|..+++|++|+|++|
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence 3444555555555442 233455555555555555555544454455555555555555555 34555555555555555
Q ss_pred CCCC---CCCCC------CCCCCeeeccccccc
Q 017047 329 DFKG---PGFEP------LENCKALQFCSNCIL 352 (378)
Q Consensus 329 ~Ls~---~~f~~------L~nLk~LdLsnNrIs 352 (378)
+|+. ..|.. +..|+.|++.+|.+.
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCccChhHccccccccccccccceEeecCccc
Confidence 5551 22222 233455555555554
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.13 E-value=6.9e-11 Score=110.38 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=65.8
Q ss_pred ccccccCCCceeecCccc-ccCCCcceEEecCCcCCccCcccc-CCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCC
Q 017047 251 AGTPQSKDSRFIVLPQVE-IKAGDDVRLDLRGHRVRSLIASGL-NLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN 328 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP~l~-~KlssL~~LDLSgN~LssL~~s~f-~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N 328 (378)
...+++.+|+|..++... ..+..|++|||++|+|..+.+..+ ..+++|++|+|++|.|..++.+..+.+|++|+|++|
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201 (317)
T ss_dssp CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS
T ss_pred CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCC
Confidence 344555566666654432 345667777777777776654444 245667777777777766655555777777777777
Q ss_pred CCCC--CCCCCCCCCCeeeccccccccc
Q 017047 329 DFKG--PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 329 ~Ls~--~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+. ..|..+.+|+.|++.+|+|..+
T Consensus 202 ~l~~l~~~~~~l~~L~~L~L~~N~l~~l 229 (317)
T 3o53_A 202 KLAFMGPEFQSAAGVTWISLRNNKLVLI 229 (317)
T ss_dssp CCCEECGGGGGGTTCSEEECTTSCCCEE
T ss_pred cCCcchhhhcccCcccEEECcCCcccch
Confidence 7772 4566677777777777777643
No 93
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.13 E-value=7.5e-11 Score=118.01 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=86.4
Q ss_pred chhccccccccccCCCceeecC-cccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCC
Q 017047 244 NLSGQRRAGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTR 319 (378)
Q Consensus 244 sL~~~~~~~T~dlrdnrfs~LP-~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~Ltn 319 (378)
.|....+...+++.+|+|..++ ..+..+.+|++|||++|+|+.++.. .+++|++|+|++|+|..+ ..|..+++
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCc
Confidence 4556667788888999998874 4556788999999999999988865 568899999999999876 47889999
Q ss_pred CcEEeCCCCCCCCCCCCCCCCC--Ceeecccccc
Q 017047 320 VKVLDLSFNDFKGPGFEPLENC--KALQFCSNCI 351 (378)
Q Consensus 320 Lq~LdLS~N~Ls~~~f~~L~nL--k~LdLsnNrI 351 (378)
|++|+|++|+|+...|..+.+| +.|++.+|.|
T Consensus 148 L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred ccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 9999999999986566666766 9999999988
No 94
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.12 E-value=1.2e-10 Score=114.73 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=45.3
Q ss_pred ccccccCCCceeecC-cccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCC
Q 017047 251 AGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSF 327 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP-~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~ 327 (378)
...+++.+|+|..++ ..+..+.+|++|+|++|+|..+++..|..+++|++|+|++|+|.++ ..|..+++|++|+|++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 334444444444432 2223444445555555555444444444444455555555544444 1244444555555555
Q ss_pred CCCCC----CCCCCCCCCCeeeccccc
Q 017047 328 NDFKG----PGFEPLENCKALQFCSNC 350 (378)
Q Consensus 328 N~Ls~----~~f~~L~nLk~LdLsnNr 350 (378)
|+|+. ..|..+.+|+.|++.+|.
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CcccccchhhhhhccCCccEEECCCCc
Confidence 54441 234444444444444444
No 95
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.12 E-value=3.3e-10 Score=105.38 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=90.4
Q ss_pred ccccccccCCCceeecC-cccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCC
Q 017047 249 RRAGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLS 326 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP-~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS 326 (378)
.+...+++.+|+|..++ ..+..+.+|+.|+|++|+|..+++..|..+++|++|+|++|+|..+ ..+..+++|++|+|+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 35667788999998874 4556889999999999999999887788889999999999999998 679999999999999
Q ss_pred CCCCCC---CCCCC------CCCCCeeeccccccccc
Q 017047 327 FNDFKG---PGFEP------LENCKALQFCSNCILLE 354 (378)
Q Consensus 327 ~N~Ls~---~~f~~------L~nLk~LdLsnNrIs~i 354 (378)
+|+|+. ..|.. +..|..|++.+|.+..+
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 999993 34433 36789999999999765
No 96
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=1.7e-10 Score=117.20 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=94.6
Q ss_pred ccccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047 249 RRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL 325 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL 325 (378)
.+...+++.+|.|..+|...+ .+.+|+.|+|++|.|..+++..|..+++|++|+|++|.|.++ ..|..|++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 345667788999999998764 688999999999999999988899999999999999999998 45799999999999
Q ss_pred CCCCCCC---CCCCCCCCCCeeecccccccccc
Q 017047 326 SFNDFKG---PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
++|.|+. ..|..+.+|+.|++.+|.|..+.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 9999993 44789999999999999998653
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.12 E-value=4.2e-11 Score=111.64 Aligned_cols=106 Identities=15% Similarity=0.079 Sum_probs=71.6
Q ss_pred ccccccccCCCceeecC-cccccCCCcceEEecCCcCCcc---Ccc-ccCCCCCccEEEcCCCCCCCcc-----cCCCCC
Q 017047 249 RRAGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHRVRSL---IAS-GLNLQPNLEFVYLRDNMLSTLE-----GIEILT 318 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP-~l~~KlssL~~LDLSgN~LssL---~~s-~f~lL~nLe~LdLs~NkLs~L~-----~f~~Lt 318 (378)
.+...+++.+|+|..++ ..+..+.+|++|||++|+|.+. +.. .+..+++|++|+|++|+|..++ .+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 45666777777777777 3444677778888888876542 111 2255677888888888877541 234667
Q ss_pred CCcEEeCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047 319 RVKVLDLSFNDFKG----PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 319 nLq~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|++|||++|+|+. ..+..+.+|+.|++.+|+|+.+
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 88888888888873 3455667888888888887744
No 98
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=1.5e-10 Score=99.86 Aligned_cols=84 Identities=19% Similarity=0.153 Sum_probs=74.6
Q ss_pred ccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-c-cCCCCCCCcEEeC
Q 017047 249 RRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-E-GIEILTRVKVLDL 325 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~-~f~~LtnLq~LdL 325 (378)
.+...+++.+|+|..++.. +..+.+|++|||++|+|+.+++..|..+++|++|+|++|+|.++ + .|..+.+|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4556788999999998554 55789999999999999999998888889999999999999999 3 5899999999999
Q ss_pred CCCCCCC
Q 017047 326 SFNDFKG 332 (378)
Q Consensus 326 S~N~Ls~ 332 (378)
++|.|..
T Consensus 110 ~~N~~~c 116 (170)
T 3g39_A 110 LNNPWDC 116 (170)
T ss_dssp CSSCBCT
T ss_pred CCCCCCC
Confidence 9999984
No 99
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.11 E-value=1.7e-10 Score=113.04 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=48.9
Q ss_pred cccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCC
Q 017047 252 GTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK 331 (378)
Q Consensus 252 ~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls 331 (378)
..+++.+|+|..++. ...+..|+.|+|++|+|..+++ +..+++|+.|+|++|+|.++..+..+++|+.|+|++|.|+
T Consensus 268 ~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 268 TELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp SEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCC
T ss_pred CEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccC
Confidence 334444444444443 3334445555555555554443 3334455555555555554433445555555555555555
Q ss_pred C-CCCCCCCCCCeeeccccccccc
Q 017047 332 G-PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 332 ~-~~f~~L~nLk~LdLsnNrIs~i 354 (378)
. ..+..|.+|+.|++.+|+|..+
T Consensus 345 ~~~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 345 DVSSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCBC
T ss_pred CchhhccCCCCCEEeCCCCccCcc
Confidence 2 4445555555555555555443
No 100
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.10 E-value=1.6e-10 Score=107.98 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=89.7
Q ss_pred ccccccccccCCCceeecCcccc--cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEE
Q 017047 247 GQRRAGTPQSKDSRFIVLPQVEI--KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVL 323 (378)
Q Consensus 247 ~~~~~~T~dlrdnrfs~LP~l~~--KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~L 323 (378)
...+...+++.+|+|..++.... .+..|++|+|++|+|..++.. ..+++|++|+|++|+|..+ +.|..+++|++|
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 219 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGGGGGGTTCSEE
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhhhcccCcccEE
Confidence 34567778899999998754432 578999999999999999643 3468999999999999999 779999999999
Q ss_pred eCCCCCCCC--CCCCCCCCCCeeeccccccc
Q 017047 324 DLSFNDFKG--PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 324 dLS~N~Ls~--~~f~~L~nLk~LdLsnNrIs 352 (378)
+|++|+|+. ..|..+.+|+.|++.+|.|.
T Consensus 220 ~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 999999993 67889999999999999998
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.09 E-value=2.5e-10 Score=111.81 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=71.3
Q ss_pred hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeC
Q 017047 246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDL 325 (378)
Q Consensus 246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdL 325 (378)
....+...+++.+|++..++. ...+..|+.|+|++|+|..+++ +..+++|+.|+|++|+|.++..+..+++|+.|+|
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 316 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 316 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEEC
T ss_pred hcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEEC
Confidence 334445556666666666654 4456667777777777776654 5556777777777777777755777777777777
Q ss_pred CCCCCCC-CCCCCCCCCCeeecccccccccc
Q 017047 326 SFNDFKG-PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 326 S~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
++|+|+. ..+..+.+|+.|++.+|.|....
T Consensus 317 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 317 YFNNISDISPVSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp CSSCCSCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred cCCcCCCchhhccCccCCEeECCCCccCCch
Confidence 7777773 33667777777777777776553
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.09 E-value=1.2e-10 Score=116.55 Aligned_cols=102 Identities=21% Similarity=0.264 Sum_probs=59.1
Q ss_pred cccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccC-CCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCC
Q 017047 252 GTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLN-LQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFND 329 (378)
Q Consensus 252 ~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~-lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~ 329 (378)
..+++.+|+|..++. .+..+..|+.|||++|.|.++.+..|. .+++|+.|+|++|.|.+++.+..+++|++|+|++|.
T Consensus 123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK 202 (487)
T ss_dssp EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCC
Confidence 344455555555433 223455666666666666665444443 446666666666666666555556666666666666
Q ss_pred CCC--CCCCCCCCCCeeecccccccc
Q 017047 330 FKG--PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 330 Ls~--~~f~~L~nLk~LdLsnNrIs~ 353 (378)
|+. ..|..+.+|+.|++.+|.|..
T Consensus 203 l~~~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 203 LAFMGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp CCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred CCCCCHhHcCCCCccEEEecCCcCcc
Confidence 662 445666666666666666654
No 103
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.09 E-value=2e-10 Score=116.57 Aligned_cols=106 Identities=19% Similarity=0.164 Sum_probs=94.6
Q ss_pred ccccccccCCCceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcc--cCCCCCCCcEEeC
Q 017047 249 RRAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLE--GIEILTRVKVLDL 325 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~--~f~~LtnLq~LdL 325 (378)
.+...+++.+|+|..+|.. +.++.+|++|||++|+|..+.+..|..+++|++|+|++|.|..++ .|..|.+|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 4677788999999998875 457899999999999999998888888899999999999999993 5999999999999
Q ss_pred CCCCCCC---CCCCCCCCCCeeeccccccccc
Q 017047 326 SFNDFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
++|+|+. ..|..|.+|+.|++.+|.|...
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 136 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCccccc
Confidence 9999993 5689999999999999998754
No 104
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=2.5e-10 Score=99.26 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=74.6
Q ss_pred ccccccccCCCceeecCc-ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-c-cCCCCCCCcEEeC
Q 017047 249 RRAGTPQSKDSRFIVLPQ-VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-E-GIEILTRVKVLDL 325 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~-l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~-~f~~LtnLq~LdL 325 (378)
.+...+++.+|+|..++. .+..+.+|++|+|++|+|+.+++..|..+++|++|+|++|+|..+ + .|..+.+|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 456678899999999855 455789999999999999999988888889999999999999999 4 4899999999999
Q ss_pred CCCCCCC
Q 017047 326 SFNDFKG 332 (378)
Q Consensus 326 S~N~Ls~ 332 (378)
++|.|..
T Consensus 113 ~~N~~~c 119 (174)
T 2r9u_A 113 YNNPWDC 119 (174)
T ss_dssp CSSCBCT
T ss_pred CCCCccc
Confidence 9999984
No 105
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.07 E-value=3.6e-10 Score=105.50 Aligned_cols=106 Identities=9% Similarity=0.057 Sum_probs=64.4
Q ss_pred hhccccccccccCCCceeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq 321 (378)
|....+...+++.+|+|..+ |..+..+.+|++|+|++|+|..++...+ ++|++|+|++|+|..+ ..|..+++|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 33344455566666666665 3344456666666666666666654332 5666777777766666 2366677777
Q ss_pred EEeCCCCCCC---C--CCCCCCCCCCeeeccccccccc
Q 017047 322 VLDLSFNDFK---G--PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 322 ~LdLS~N~Ls---~--~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+|++|.|+ . ..|..+ +|+.|++.+|+|..+
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred EEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 7777777764 1 344555 677777777766543
No 106
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.06 E-value=7e-10 Score=110.20 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=77.8
Q ss_pred hccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeC
Q 017047 246 SGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDL 325 (378)
Q Consensus 246 ~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdL 325 (378)
....+...+++.+|+|..+| +..+.+|++|+|++|+|..++ +..+++|++|+|++|+|.++ .+..+++|++|+|
T Consensus 82 ~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l 155 (457)
T 3bz5_A 82 SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDC 155 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEEC
T ss_pred ccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee-ccccCCcCCEEEC
Confidence 33455667777888887775 456778888888888888874 66678888888888888877 4778888888888
Q ss_pred CCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047 326 SFNDFK-GPGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 326 S~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i 354 (378)
++|.+. ...|..+.+|+.|++.+|+|+.+
T Consensus 156 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 156 HLNKKITKLDVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp TTCSCCCCCCCTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcccccccccCCcCCEEECCCCcccee
Confidence 888544 34677788888888888888764
No 107
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.04 E-value=1.4e-10 Score=115.94 Aligned_cols=105 Identities=12% Similarity=0.039 Sum_probs=85.9
Q ss_pred ccccccccccCCCceeecC-cccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEE
Q 017047 247 GQRRAGTPQSKDSRFIVLP-QVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVL 323 (378)
Q Consensus 247 ~~~~~~T~dlrdnrfs~LP-~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~L 323 (378)
...+...+++.+|+|..++ ..+. .+..|+.|+|++|.|.+++. +..+++|+.|+|++|.|.++ +.|..+++|+.|
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L 219 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEE
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEE
Confidence 3456677888899888744 3333 67899999999999998864 33468999999999999988 778899999999
Q ss_pred eCCCCCCCC--CCCCCCCCCCeeecccccccc
Q 017047 324 DLSFNDFKG--PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 324 dLS~N~Ls~--~~f~~L~nLk~LdLsnNrIs~ 353 (378)
||++|.|+. ..|..+.+|+.|++.+|.|.+
T Consensus 220 ~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp ECTTSCCCEECTTCCCCTTCCEEECTTCCBCH
T ss_pred EecCCcCcccchhhccCCCCCEEEcCCCCCcC
Confidence 999999993 667888899999999999873
No 108
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.04 E-value=4.9e-10 Score=117.30 Aligned_cols=104 Identities=20% Similarity=0.131 Sum_probs=53.8
Q ss_pred ccccccccCCCcee-ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047 249 RRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL 325 (378)
Q Consensus 249 ~~~~T~dlrdnrfs-~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL 325 (378)
.+...+++.+|+|. .+|..+..+..|+.|+|++|+|.+..+..|..+++|+.|+|++|+|.+. ..|..+++|++|+|
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 34444555555555 3444444555555555555555544444444445555555555555533 34555555555555
Q ss_pred CCCCCCC---CCCCCCCCCCeeeccccccc
Q 017047 326 SFNDFKG---PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 326 S~N~Ls~---~~f~~L~nLk~LdLsnNrIs 352 (378)
++|+|++ ..|+.+.+|+.|++.+|+|.
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 5555552 33444555555555555554
No 109
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=2.3e-12 Score=112.68 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=93.0
Q ss_pred chhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEE
Q 017047 244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVL 323 (378)
Q Consensus 244 sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~L 323 (378)
.+....+...+++.+|+|..+| .+..+.+|++|+|++|+|..++. .+..+++|+.|+|++|+|.+++.|..+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCCccccCCCCCEE
Confidence 3555566778889999999998 66678899999999999998875 345558899999999999999888999999999
Q ss_pred eCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047 324 DLSFNDFKG----PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 324 dLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|++|+|+. ..+..+.+|+.|++.+|.|...
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 999999994 3578899999999999998654
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.02 E-value=3.3e-10 Score=107.43 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=58.1
Q ss_pred ccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCcE-EeCCCC
Q 017047 253 TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVKV-LDLSFN 328 (378)
Q Consensus 253 T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~-LdLS~N 328 (378)
+++..++++..+|..+ ..++++|+|++|+|+.|+...|..+++|++|+|++|+|.+. ..|.+|.+|.. +++.+|
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 3445555666666533 24566666666666666665566666666666666665442 34556665543 445556
Q ss_pred CCCC---CCCCCCCCCCeeeccccccccc
Q 017047 329 DFKG---PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 329 ~Ls~---~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+. ..|..|.+|+.|++.+|+|..+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred cccccCchhhhhccccccccccccccccC
Confidence 6662 4456666666666666666543
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.01 E-value=2.9e-10 Score=119.85 Aligned_cols=109 Identities=20% Similarity=0.176 Sum_probs=77.1
Q ss_pred hhcccccc-ccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcE
Q 017047 245 LSGQRRAG-TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKV 322 (378)
Q Consensus 245 L~~~~~~~-T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~ 322 (378)
+..+++.+ .+++.+|++...|..+..+..|+.|||++|+|..|+...| .+++|++|+|++|.|..+ ..|..|.+|++
T Consensus 196 l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 196 KKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRV 274 (727)
T ss_dssp --------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCE
T ss_pred CccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCE
Confidence 44444433 3455677777777777788999999999999999988766 569999999999999988 67999999999
Q ss_pred EeCCCCCCC-C-CCCCCCCCCCeeeccccccccc
Q 017047 323 LDLSFNDFK-G-PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 323 LdLS~N~Ls-~-~~f~~L~nLk~LdLsnNrIs~i 354 (378)
|||++|.|+ + ..|+.|.+|++|+|.+|.|..+
T Consensus 275 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l 308 (727)
T 4b8c_D 275 LDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308 (727)
T ss_dssp EECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC
T ss_pred EeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc
Confidence 999999999 4 6789999999999999999755
No 112
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.99 E-value=6e-10 Score=117.82 Aligned_cols=110 Identities=21% Similarity=0.141 Sum_probs=81.0
Q ss_pred hhccccccccccCCCc-eeec-CcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--c--cCCCCC
Q 017047 245 LSGQRRAGTPQSKDSR-FIVL-PQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--E--GIEILT 318 (378)
Q Consensus 245 L~~~~~~~T~dlrdnr-fs~L-P~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~--~f~~Lt 318 (378)
|....+...+++.+|. +..+ |..+.++.+|++|+|++|.|..+.+..|..+.+|++|+|++|.|.+. . .|..|+
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 4444556667777763 3344 55556778888888888888888777788788888888888888762 3 378888
Q ss_pred CCcEEeCCCCCCCC----CCCCCCCCCCeeeccccccccc
Q 017047 319 RVKVLDLSFNDFKG----PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 319 nLq~LdLS~N~Ls~----~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|++|||++|.|.. ..|..|.+|+.|++.+|.|...
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 88888888888873 3577888888888888887654
No 113
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.99 E-value=1.1e-09 Score=115.92 Aligned_cols=105 Identities=15% Similarity=0.061 Sum_probs=89.4
Q ss_pred cccccccCCCceeecC-cccccCCCcceEEecCCc-CCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeC
Q 017047 250 RAGTPQSKDSRFIVLP-QVEIKAGDDVRLDLRGHR-VRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDL 325 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP-~l~~KlssL~~LDLSgN~-LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdL 325 (378)
+...+|+.+|+|..++ ..+..+.+|++|||++|. +..+++..|..+++|++|+|++|.|..+ ..|..|.+|++|+|
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence 4566788888888764 455688999999999994 5567677889999999999999999988 68999999999999
Q ss_pred CCCCCCC---C--CCCCCCCCCeeeccccccccc
Q 017047 326 SFNDFKG---P--GFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 326 S~N~Ls~---~--~f~~L~nLk~LdLsnNrIs~i 354 (378)
++|.|.. . .|..|.+|+.|++.+|.|...
T Consensus 105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred cCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence 9999983 2 388999999999999998754
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.98 E-value=9.4e-10 Score=113.08 Aligned_cols=100 Identities=17% Similarity=0.102 Sum_probs=85.9
Q ss_pred hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc---ccCCCCCCCc
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL---EGIEILTRVK 321 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq 321 (378)
|....+...+++.+|+|..+|..+..+..|+.|+|++|+|++++ .|..+++|+.|+|++|+|.++ ..|..|++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence 55556678899999999999998889999999999999999987 588889999999999999987 5789999999
Q ss_pred EEeCCCCCCCC--CCCC----CCCCCCeeec
Q 017047 322 VLDLSFNDFKG--PGFE----PLENCKALQF 346 (378)
Q Consensus 322 ~LdLS~N~Ls~--~~f~----~L~nLk~LdL 346 (378)
.|+|++|.|+. +.+. .|++|+.|++
T Consensus 537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999994 2222 3678888754
No 115
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.98 E-value=9.5e-10 Score=113.06 Aligned_cols=104 Identities=18% Similarity=0.078 Sum_probs=57.9
Q ss_pred ccccccccCCCceeecCcccccCC--------CcceEEecCCcCCccCcccc-CCCCCccEEEcCCCCCCCc-ccCCCCC
Q 017047 249 RRAGTPQSKDSRFIVLPQVEIKAG--------DDVRLDLRGHRVRSLIASGL-NLQPNLEFVYLRDNMLSTL-EGIEILT 318 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~Kls--------sL~~LDLSgN~LssL~~s~f-~lL~nLe~LdLs~NkLs~L-~~f~~Lt 318 (378)
.+...+++.+|+|..+|...+... .|+.|+|++|+|..++...+ ..+++|+.|+|++|+|.++ ..+..++
T Consensus 457 ~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~ 536 (636)
T 4eco_A 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS 536 (636)
T ss_dssp CCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCS
T ss_pred CCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCC
Confidence 334445555666665555443221 56666666666665554333 2446666666666666666 4555666
Q ss_pred CCcEEeCC------CCCCCC---CCCCCCCCCCeeeccccccc
Q 017047 319 RVKVLDLS------FNDFKG---PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 319 nLq~LdLS------~N~Ls~---~~f~~L~nLk~LdLsnNrIs 352 (378)
+|++|+|+ +|+|.. ..|..|.+|+.|++.+|+|.
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 66666663 344442 34555666666666666664
No 116
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.96 E-value=3.3e-10 Score=105.26 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=47.6
Q ss_pred cccccccCCCceeecCcc-cccCCCcceEEecCCcCCc---cCcc-ccCCCCCccEEEcCCCCCCCccc-----CCCCCC
Q 017047 250 RAGTPQSKDSRFIVLPQV-EIKAGDDVRLDLRGHRVRS---LIAS-GLNLQPNLEFVYLRDNMLSTLEG-----IEILTR 319 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l-~~KlssL~~LDLSgN~Lss---L~~s-~f~lL~nLe~LdLs~NkLs~L~~-----f~~Ltn 319 (378)
+...+++.+|+|..++.. +..+.+|++|||++|+|.+ ++.. .+..+++|++|+|++|+|+.++. +..+.+
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ 225 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence 344445555555544432 2245555555555555543 2111 12334555555555555554421 234455
Q ss_pred CcEEeCCCCCCCC---CCCCCC---CCCCeeeccccccc
Q 017047 320 VKVLDLSFNDFKG---PGFEPL---ENCKALQFCSNCIL 352 (378)
Q Consensus 320 Lq~LdLS~N~Ls~---~~f~~L---~nLk~LdLsnNrIs 352 (378)
|++|||++|+|.. ..+..+ .+|+.|++.+|+|+
T Consensus 226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 5555555555552 223333 35555555555554
No 117
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.96 E-value=4.5e-10 Score=115.46 Aligned_cols=108 Identities=12% Similarity=0.172 Sum_probs=73.4
Q ss_pred hhccccccccccCCCceee------------------cCcccc--cCCCcceEEecCCcCCccCccccCCCCCccEEEcC
Q 017047 245 LSGQRRAGTPQSKDSRFIV------------------LPQVEI--KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLR 304 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~------------------LP~l~~--KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs 304 (378)
|....+...+++.+|+|.. +|..+. ++.+|++|+|++|++.+..+..|..+++|++|+|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 3344556667777777777 777766 77777777777777776665666667777777777
Q ss_pred CCC-CCC--c-ccCCCC------CCCcEEeCCCCCCC-C-C--CCCCCCCCCeeeccccccc
Q 017047 305 DNM-LST--L-EGIEIL------TRVKVLDLSFNDFK-G-P--GFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 305 ~Nk-Ls~--L-~~f~~L------tnLq~LdLS~N~Ls-~-~--~f~~L~nLk~LdLsnNrIs 352 (378)
+|+ |++ + ..++.+ ++|++|+|++|+|+ . . .|..+.+|+.|++.+|+|.
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc
Confidence 776 765 3 334443 77777777777776 3 2 3667777777777777766
No 118
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=1.6e-09 Score=101.43 Aligned_cols=87 Identities=20% Similarity=0.172 Sum_probs=74.6
Q ss_pred hhccccccccccCC-CceeecCcc-cccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-cc-CCCCCCC
Q 017047 245 LSGQRRAGTPQSKD-SRFIVLPQV-EIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EG-IEILTRV 320 (378)
Q Consensus 245 L~~~~~~~T~dlrd-nrfs~LP~l-~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~-f~~LtnL 320 (378)
|....+...+++.+ |+|..+|.. +..+.+|+.|||++|+|+++++..|..+++|+.|+|++|+|.++ +. |..+. |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44455677889986 999999965 45799999999999999999998899899999999999999999 44 44454 9
Q ss_pred cEEeCCCCCCCC
Q 017047 321 KVLDLSFNDFKG 332 (378)
Q Consensus 321 q~LdLS~N~Ls~ 332 (378)
+.|+|.+|.|..
T Consensus 106 ~~l~l~~N~~~c 117 (347)
T 2ifg_A 106 QELVLSGNPLHC 117 (347)
T ss_dssp CEEECCSSCCCC
T ss_pred eEEEeeCCCccC
Confidence 999999999983
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=4.5e-12 Score=110.83 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=80.7
Q ss_pred ceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCCC-CCCCC
Q 017047 260 RFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFKG-PGFEP 337 (378)
Q Consensus 260 rfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls~-~~f~~ 337 (378)
.+..+|..+..+.+|++|+|++|+|..++ .+..+++|+.|+|++|.|..+ ..+..+++|++|+|++|+|+. +.|..
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~ 113 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEK 113 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCcccc
Confidence 34445556778899999999999999987 577779999999999999988 445667999999999999995 66778
Q ss_pred CCCCCeeeccccccccccc
Q 017047 338 LENCKALQFCSNCILLETK 356 (378)
Q Consensus 338 L~nLk~LdLsnNrIs~i~~ 356 (378)
+.+|+.|++.+|+|..+..
T Consensus 114 l~~L~~L~l~~N~i~~~~~ 132 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGE 132 (198)
T ss_dssp HHHSSEEEESEEECCCHHH
T ss_pred CCCCCEEECCCCcCCchhH
Confidence 8899999999999986543
No 120
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=2.6e-09 Score=115.79 Aligned_cols=102 Identities=21% Similarity=0.108 Sum_probs=78.0
Q ss_pred cccccccCCCceeecCc--ccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc-ccCCCCCC-CcEEeC
Q 017047 250 RAGTPQSKDSRFIVLPQ--VEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL-EGIEILTR-VKVLDL 325 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~--l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L-~~f~~Ltn-Lq~LdL 325 (378)
+...+++.+|+|..+|. .+.++.+|+.|+|++|+|..++ .|..+++|+.|+|++|+|..+ ..|..+.+ |+.|+|
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEEC
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEEC
Confidence 56777788888888887 6777888888888888888776 577778888888888888877 56788888 888888
Q ss_pred CCCCCC-C-CCCCCCC--CCCeeecccccccc
Q 017047 326 SFNDFK-G-PGFEPLE--NCKALQFCSNCILL 353 (378)
Q Consensus 326 S~N~Ls-~-~~f~~L~--nLk~LdLsnNrIs~ 353 (378)
++|.|+ . ..|..+. +|+.|++.+|+|..
T Consensus 627 s~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 888887 3 3344443 37777777777753
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.90 E-value=5.8e-09 Score=103.55 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=67.1
Q ss_pred hhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEe
Q 017047 245 LSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLD 324 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~Ld 324 (378)
+....+...+++.+|+|..+|... ..|++|+|++|+|..++ .|..+++|+.|+|++|+|.+++.+. .+|++|+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~ 221 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLP--LSLESIV 221 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEE
T ss_pred cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCc--CcccEEE
Confidence 334444555666666666666432 35666666666666655 3556667777777777776663322 4677777
Q ss_pred CCCCCCC-CCCCCCCCCCCeeeccccccccc
Q 017047 325 LSFNDFK-GPGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 325 LS~N~Ls-~~~f~~L~nLk~LdLsnNrIs~i 354 (378)
|++|+|+ .+.|..+.+|+.|++.+|+|..+
T Consensus 222 l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 222 AGNNILEELPELQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp CCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred CcCCcCCcccccCCCCCCCEEECCCCcCCcc
Confidence 7777777 35677888888888888888754
No 122
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=1.2e-09 Score=118.39 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=61.0
Q ss_pred hhccccccccccCCCceee------------------cCcccc--cCCCcceEEecCCcCCccCccccCCCCCccEEEcC
Q 017047 245 LSGQRRAGTPQSKDSRFIV------------------LPQVEI--KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLR 304 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs~------------------LP~l~~--KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs 304 (378)
|....+...+++.+|+|.. +|..+. ++.+|++|+|++|++.+..+..|..+++|+.|+|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 3334445556666666665 666655 66666666666666655544555555666666666
Q ss_pred CCC-CCC--c-c-------cCCCCCCCcEEeCCCCCCC-CC---CCCCCCCCCeeeccccccc
Q 017047 305 DNM-LST--L-E-------GIEILTRVKVLDLSFNDFK-GP---GFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 305 ~Nk-Ls~--L-~-------~f~~LtnLq~LdLS~N~Ls-~~---~f~~L~nLk~LdLsnNrIs 352 (378)
+|+ |++ + . .+..+++|++|+|++|+|+ .+ .|..|.+|+.|++.+|+|.
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc
Confidence 665 554 2 2 2223335566666666555 22 2555555555555555554
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.86 E-value=9.1e-09 Score=102.11 Aligned_cols=122 Identities=13% Similarity=0.057 Sum_probs=87.2
Q ss_pred cccccCCCCcccccccccchhcc-ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcC
Q 017047 226 VSSGLRNGSLSSSLDRSSNLSGQ-RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLR 304 (378)
Q Consensus 226 ~s~~l~~~~l~~~l~rL~sL~~~-~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs 304 (378)
+..+.+...|...-+++..++.. .+...+++.+|+|..+|. +..+..|++|+|++|+|.+++.. ..+|++|+|+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~-~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~ 223 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAG 223 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECC
T ss_pred cCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCcc-ccCCCCCCEEECCCCcCCcCCCC----cCcccEEECc
Confidence 44444444444444444433221 256667788888888884 56788899999999999987642 2589999999
Q ss_pred CCCCCCcccCCCCCCCcEEeCCCCCCCC-CCCCCCCCCCeeeccccccccc
Q 017047 305 DNMLSTLEGIEILTRVKVLDLSFNDFKG-PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 305 ~NkLs~L~~f~~LtnLq~LdLS~N~Ls~-~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|.|..++.|..+++|++|+|++|+|+. +. .+.+|+.|++.+|+|..+
T Consensus 224 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 224 NNILEELPELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTDL 272 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSCC
T ss_pred CCcCCcccccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCccccc
Confidence 9999988778899999999999999884 32 236777888877777653
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.85 E-value=9.3e-09 Score=106.48 Aligned_cols=96 Identities=23% Similarity=0.279 Sum_probs=72.4
Q ss_pred ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCC
Q 017047 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN 328 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N 328 (378)
.+...+++.+|+|..+|. +.+ +|+.|+|++|+|.+++. .+++|+.|+|++|+|++++. .+.+|++|+|++|
T Consensus 100 ~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 100 ASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNN 170 (571)
T ss_dssp TTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS
T ss_pred CCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCccCcCCC--cCCCcCEEECCCC
Confidence 345567777888888777 333 78888888888888775 45788888888888888754 5788888888888
Q ss_pred CCCC-CCCCCCCCCCeeecccccccccc
Q 017047 329 DFKG-PGFEPLENCKALQFCSNCILLET 355 (378)
Q Consensus 329 ~Ls~-~~f~~L~nLk~LdLsnNrIs~i~ 355 (378)
+|+. +.|. .+|+.|+|.+|+|+.+.
T Consensus 171 ~L~~lp~l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 171 QLTFLPELP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp CCSCCCCCC--TTCCEEECCSSCCSSCC
T ss_pred CCCCcchhh--CCCCEEECcCCCCCchh
Confidence 8884 4454 78888999988887543
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.84 E-value=8e-09 Score=106.96 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=78.6
Q ss_pred cccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCC
Q 017047 250 RAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFND 329 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~ 329 (378)
+...+++.+|+|..+|. .+..|+.|+|++|+|+.++. .+++|+.|+|++|+|++++.|. .+|+.|+|++|+
T Consensus 121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNL 191 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSC
T ss_pred CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCC
Confidence 67778899999999998 57889999999999999875 4588999999999999995555 899999999999
Q ss_pred CC-CCCCCCCCCC-------Ceeeccccccccc
Q 017047 330 FK-GPGFEPLENC-------KALQFCSNCILLE 354 (378)
Q Consensus 330 Ls-~~~f~~L~nL-------k~LdLsnNrIs~i 354 (378)
|+ .+.|.. +| +.|+|.+|+|+.+
T Consensus 192 L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~l 222 (571)
T 3cvr_A 192 LESLPAVPV--RNHHSEETEIFFRCRENRITHI 222 (571)
T ss_dssp CSSCCCCC----------CCEEEECCSSCCCCC
T ss_pred CCchhhHHH--hhhcccccceEEecCCCcceec
Confidence 99 344543 77 9999999999865
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.75 E-value=2.3e-08 Score=104.33 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=66.8
Q ss_pred cccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCCCCC-C
Q 017047 254 PQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFNDFK-G 332 (378)
Q Consensus 254 ~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N~Ls-~ 332 (378)
+++.+|+|..+|.. +.+|+.|+|++|+|..++ ..+++|+.|+|++|+|..++. .+.+|+.|+|++|+|+ .
T Consensus 206 L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~l 276 (622)
T 3g06_A 206 LWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRL 276 (622)
T ss_dssp EECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSC
T ss_pred EECcCCcccccCCC---CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcC
Confidence 34455555555542 356778888888888776 234678888888888887755 6778888888888888 3
Q ss_pred -CCCCCCCCCCeeeccccccccc
Q 017047 333 -PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 333 -~~f~~L~nLk~LdLsnNrIs~i 354 (378)
..|..|.+|+.|++.+|.|...
T Consensus 277 p~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 277 PESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CGGGGGSCTTCEEECCSCCCCHH
T ss_pred CHHHhhccccCEEEecCCCCCCc
Confidence 5577888888888888888743
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.71 E-value=2.9e-08 Score=103.57 Aligned_cols=95 Identities=20% Similarity=0.176 Sum_probs=76.8
Q ss_pred ccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCcccCCCCCCCcEEeCCCC
Q 017047 249 RRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTLEGIEILTRVKVLDLSFN 328 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L~~f~~LtnLq~LdLS~N 328 (378)
.+...+++.+|+|..+|. .+.+|++|||++|+|+.++. .+++|++|+|++|.|..++. .+.+|+.|+|++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCC
Confidence 466778888888888887 46789999999999998885 45889999999999988855 6788899999999
Q ss_pred CCCC-CCCCCCCCCCeeeccccccccc
Q 017047 329 DFKG-PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 329 ~Ls~-~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+|+. +. .+.+|+.|++.+|.|..+
T Consensus 132 ~l~~lp~--~l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 132 QLTSLPV--LPPGLQELSVSDNQLASL 156 (622)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCC
T ss_pred CCCcCCC--CCCCCCEEECcCCcCCCc
Confidence 8884 32 247888888888888764
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.70 E-value=2.8e-09 Score=98.43 Aligned_cols=103 Identities=21% Similarity=0.205 Sum_probs=73.2
Q ss_pred cccccccccCCCceee--cCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCC-CCCC--c-ccCCCCCCCc
Q 017047 248 QRRAGTPQSKDSRFIV--LPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN-MLST--L-EGIEILTRVK 321 (378)
Q Consensus 248 ~~~~~T~dlrdnrfs~--LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~N-kLs~--L-~~f~~LtnLq 321 (378)
..+...+++.+|.|.. +|.....+.+|++|+|++|.|.......+..+++|++|+|++| .|+. + ..+..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 3455667777777654 5665667778888888888877555445666788888888888 6664 4 3467788888
Q ss_pred EEeCCCC-CCCC----CCCCCCC-CCCeeeccccc
Q 017047 322 VLDLSFN-DFKG----PGFEPLE-NCKALQFCSNC 350 (378)
Q Consensus 322 ~LdLS~N-~Ls~----~~f~~L~-nLk~LdLsnNr 350 (378)
+|+|++| .|+. ..+..+. +|+.|++.+|.
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 8888888 7772 3456677 88888888884
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.68 E-value=1.4e-08 Score=96.31 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=24.7
Q ss_pred ccEEEcCCCCCCCc-ccCCCCCCCcEEeCC-CCCCC-C--CCCCCCCCCCeeeccccccc
Q 017047 298 LEFVYLRDNMLSTL-EGIEILTRVKVLDLS-FNDFK-G--PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 298 Le~LdLs~NkLs~L-~~f~~LtnLq~LdLS-~N~Ls-~--~~f~~L~nLk~LdLsnNrIs 352 (378)
|+.|+|++|+|..+ ..+..+.+|+.|+|. +|.|+ . ..|..+.+|+.|++++|+|+
T Consensus 156 l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp CEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred hhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 44445555554444 333333444444443 23444 1 23444445555555555444
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.65 E-value=1.8e-09 Score=102.75 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=41.3
Q ss_pred CCcceEEecCCcCC--ccCc--cccCCCCCccEEEcCCCCCC--C---c-c-cCCCCCCCcEEeCCCCCCC------C-C
Q 017047 272 GDDVRLDLRGHRVR--SLIA--SGLNLQPNLEFVYLRDNMLS--T---L-E-GIEILTRVKVLDLSFNDFK------G-P 333 (378)
Q Consensus 272 ssL~~LDLSgN~Ls--sL~~--s~f~lL~nLe~LdLs~NkLs--~---L-~-~f~~LtnLq~LdLS~N~Ls------~-~ 333 (378)
..|++|+|++|+|. .++. ..|..+++|+.|+|++|.|. + + + .|..+++|++|+|++|.|+ . .
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 44555555555554 1211 12233455555555555555 2 1 2 4555555666666666553 0 3
Q ss_pred CCCCCCCCCeeeccccccccc
Q 017047 334 GFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 334 ~f~~L~nLk~LdLsnNrIs~i 354 (378)
.|..+.+|+.|+|.+|.|...
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHH
T ss_pred HHccCCCcCEEECCCCCCchh
Confidence 344555566666666655533
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.64 E-value=5.8e-09 Score=99.08 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=36.0
Q ss_pred ccccccCCCceeecCc-----ccccCC-CcceEEecCCcCCccCccccCCC-----CCccEEEcCCCCCCCc--c----c
Q 017047 251 AGTPQSKDSRFIVLPQ-----VEIKAG-DDVRLDLRGHRVRSLIASGLNLQ-----PNLEFVYLRDNMLSTL--E----G 313 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP~-----l~~Kls-sL~~LDLSgN~LssL~~s~f~lL-----~nLe~LdLs~NkLs~L--~----~ 313 (378)
...+++.+|+|..++. ....+. .|++|+|++|+|.......|..+ ++|++|+|++|.|... . .
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 4444555555544442 222333 45555555555554433322221 4455555555555433 1 1
Q ss_pred CCCC-CCCcEEeCCCCCCC
Q 017047 314 IEIL-TRVKVLDLSFNDFK 331 (378)
Q Consensus 314 f~~L-tnLq~LdLS~N~Ls 331 (378)
|..+ .+|++|+|++|+|+
T Consensus 104 l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp HHTSCTTCCEEECCSSCGG
T ss_pred HHhCCCCccEEECcCCcCC
Confidence 2233 45555555555554
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.63 E-value=7.6e-09 Score=98.27 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=77.8
Q ss_pred ccCCCceee-cCcccccCCCcceEEecCCcCCccCc----cccCCCC-CccEEEcCCCCCCCc--ccCCCC-----CCCc
Q 017047 255 QSKDSRFIV-LPQVEIKAGDDVRLDLRGHRVRSLIA----SGLNLQP-NLEFVYLRDNMLSTL--EGIEIL-----TRVK 321 (378)
Q Consensus 255 dlrdnrfs~-LP~l~~KlssL~~LDLSgN~LssL~~----s~f~lL~-nLe~LdLs~NkLs~L--~~f~~L-----tnLq 321 (378)
++.+|+|.. +|........|++|||++|.|..+.. ..|..++ +|++|+|++|.|... ..|..+ .+|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 455666764 34433445569999999999999886 5666667 899999999999875 445443 9999
Q ss_pred EEeCCCCCCCC---C----CCCCC-CCCCeeecccccccccc
Q 017047 322 VLDLSFNDFKG---P----GFEPL-ENCKALQFCSNCILLET 355 (378)
Q Consensus 322 ~LdLS~N~Ls~---~----~f~~L-~nLk~LdLsnNrIs~i~ 355 (378)
+|+|++|+|+. . .|..+ .+|+.|++.+|.|....
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 99999999983 1 24555 79999999999997654
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.61 E-value=5.7e-09 Score=99.37 Aligned_cols=104 Identities=20% Similarity=0.161 Sum_probs=48.9
Q ss_pred cccccccCCCcee------ecCcccccCCCcceEEecCCcCC-----ccCccccCCCCCccEEEcCCCCCCCc------c
Q 017047 250 RAGTPQSKDSRFI------VLPQVEIKAGDDVRLDLRGHRVR-----SLIASGLNLQPNLEFVYLRDNMLSTL------E 312 (378)
Q Consensus 250 ~~~T~dlrdnrfs------~LP~l~~KlssL~~LDLSgN~Ls-----sL~~s~f~lL~nLe~LdLs~NkLs~L------~ 312 (378)
+..++++.+|+|. .+|..+..+..|+.|+|++|.|. .++. .+..+++|+.|+|++|.|... .
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 4444555555544 22223334455555555555552 2222 333445555555555555443 2
Q ss_pred cC--CCCCCCcEEeCCCCCCCC-------CCC-CCCCCCCeeeccccccccc
Q 017047 313 GI--EILTRVKVLDLSFNDFKG-------PGF-EPLENCKALQFCSNCILLE 354 (378)
Q Consensus 313 ~f--~~LtnLq~LdLS~N~Ls~-------~~f-~~L~nLk~LdLsnNrIs~i 354 (378)
.+ ..+++|++|+|++|.|+. ..+ .+|.+|+.|++.+|.|+..
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 22 225555555555555552 112 3345555555555555533
No 134
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.58 E-value=6.5e-09 Score=96.00 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=81.8
Q ss_pred hhccccccccccCCCcee-ecCcccccCCCcceEEecCC-cCCcc-CccccCCCCCccEEEcCCC-CCCC--c-ccCCCC
Q 017047 245 LSGQRRAGTPQSKDSRFI-VLPQVEIKAGDDVRLDLRGH-RVRSL-IASGLNLQPNLEFVYLRDN-MLST--L-EGIEIL 317 (378)
Q Consensus 245 L~~~~~~~T~dlrdnrfs-~LP~l~~KlssL~~LDLSgN-~LssL-~~s~f~lL~nLe~LdLs~N-kLs~--L-~~f~~L 317 (378)
+....+...+++.+|++. .+|..+..+.+|++|+|++| .|+.. .+..+..+++|++|+|++| .|+. + ..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 334556777888888876 35656667889999999999 68742 2233556789999999999 8885 3 557888
Q ss_pred C-CCcEEeCCCCC--CC-C---CCCCCCCCCCeeeccccc-cc
Q 017047 318 T-RVKVLDLSFND--FK-G---PGFEPLENCKALQFCSNC-IL 352 (378)
Q Consensus 318 t-nLq~LdLS~N~--Ls-~---~~f~~L~nLk~LdLsnNr-Is 352 (378)
+ +|++|+|++|. ++ . ..+..+.+|+.|++.+|. |+
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 8 99999999994 54 1 445678899999999998 54
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=3e-07 Score=86.19 Aligned_cols=85 Identities=16% Similarity=0.113 Sum_probs=72.5
Q ss_pred CCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCc-EEeCCCCCCC--C-CCCCCCCCCCee
Q 017047 271 AGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVK-VLDLSFNDFK--G-PGFEPLENCKAL 344 (378)
Q Consensus 271 lssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq-~LdLS~N~Ls--~-~~f~~L~nLk~L 344 (378)
+..|+.|+|.+|+|+.|+...|..|.+|+.|+|.+| |..+ .+|.+|.+|+ .|+|.+ .++ + ..|..|.+|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999999999988998899999999988 7777 6789999999 999988 555 2 788999999999
Q ss_pred ecccccccccccc
Q 017047 345 QFCSNCILLETKL 357 (378)
Q Consensus 345 dLsnNrIs~i~~L 357 (378)
++.+|.|..+..-
T Consensus 303 ~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 303 LATGDKITTLGDE 315 (329)
T ss_dssp EECSSCCCEECTT
T ss_pred EeCCCccCccchh
Confidence 9988988877543
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=3.2e-07 Score=85.96 Aligned_cols=96 Identities=7% Similarity=0.028 Sum_probs=84.7
Q ss_pred ccccccccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCcc-EEEcCCCCCCCc--ccCCCCCCCcEEe
Q 017047 249 RRAGTPQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLE-FVYLRDNMLSTL--EGIEILTRVKVLD 324 (378)
Q Consensus 249 ~~~~T~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe-~LdLs~NkLs~L--~~f~~LtnLq~Ld 324 (378)
.+...+++.+|++..+|...+ .+..|+.|+|.+| |..|....|..|.+|+ .|+|.+ .|..+ .+|.+|.+|+.|+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 466778888888999998765 6889999999998 9999999999999999 999998 78888 7899999999999
Q ss_pred CCCCCCC--C-CCCCCCCCCCeeec
Q 017047 325 LSFNDFK--G-PGFEPLENCKALQF 346 (378)
Q Consensus 325 LS~N~Ls--~-~~f~~L~nLk~LdL 346 (378)
|.+|.|+ . ..|.++.+|+.|+.
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eCCCccCccchhhhcCCcchhhhcc
Confidence 9999998 2 78999999999874
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=3.9e-08 Score=93.37 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=26.9
Q ss_pred CCCcceEEecCCcCCccCc--cccCCCCCccEEEcCCCCCCCcccCCCCC--CCcEEeCCCCCCC
Q 017047 271 AGDDVRLDLRGHRVRSLIA--SGLNLQPNLEFVYLRDNMLSTLEGIEILT--RVKVLDLSFNDFK 331 (378)
Q Consensus 271 lssL~~LDLSgN~LssL~~--s~f~lL~nLe~LdLs~NkLs~L~~f~~Lt--nLq~LdLS~N~Ls 331 (378)
+..|+.|+|++|+|.++.. ..+..+++|+.|+|++|+|.++..+..+. +|+.|+|++|.|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 3445555555555544432 11223344555555555554443333222 4445555555444
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.39 E-value=3.6e-08 Score=94.73 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=57.6
Q ss_pred ccccccccCCCcee-----ecCcccccCCCcceEEecCCcCCccCcc-ccCCCC----CccEEEcCCCCCCC-----c-c
Q 017047 249 RRAGTPQSKDSRFI-----VLPQVEIKAGDDVRLDLRGHRVRSLIAS-GLNLQP----NLEFVYLRDNMLST-----L-E 312 (378)
Q Consensus 249 ~~~~T~dlrdnrfs-----~LP~l~~KlssL~~LDLSgN~LssL~~s-~f~lL~----nLe~LdLs~NkLs~-----L-~ 312 (378)
.+...+++.+|+|. .++.....+.+|++|||++|+|...... .+..+. +|++|+|++|.|.. + .
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 34445556666555 3455445556677777777766542211 112222 56777777776653 2 4
Q ss_pred cCCCCCCCcEEeCCCCCCCC---C-----CCCCCCCCCeeecccccccc
Q 017047 313 GIEILTRVKVLDLSFNDFKG---P-----GFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 313 ~f~~LtnLq~LdLS~N~Ls~---~-----~f~~L~nLk~LdLsnNrIs~ 353 (378)
.|..+++|++|+|++|.|.. . .+..+.+|+.|++.+|+|+.
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 56666667777777766651 1 12234456666666666553
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.38 E-value=3.4e-08 Score=94.84 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=59.9
Q ss_pred cccccccCCCceee-----cCcccccCCCcceEEecCCcCCccC-----ccccCCCCCccEEEcCCCCCCC-----c-cc
Q 017047 250 RAGTPQSKDSRFIV-----LPQVEIKAGDDVRLDLRGHRVRSLI-----ASGLNLQPNLEFVYLRDNMLST-----L-EG 313 (378)
Q Consensus 250 ~~~T~dlrdnrfs~-----LP~l~~KlssL~~LDLSgN~LssL~-----~s~f~lL~nLe~LdLs~NkLs~-----L-~~ 313 (378)
+...+++.+|+|.. ++.....+..|++|+|++|.|.... +..+..+++|+.|+|++|.|+. + ..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 44455566666654 3444445667777777777766432 2223335677777777777765 3 34
Q ss_pred CCCCCCCcEEeCCCCCCCC---C-----CCCCCCCCCeeecccccccc
Q 017047 314 IEILTRVKVLDLSFNDFKG---P-----GFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 314 f~~LtnLq~LdLS~N~Ls~---~-----~f~~L~nLk~LdLsnNrIs~ 353 (378)
+..+++|++|+|++|.|.. . ......+|+.|++.+|.|+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 5556777777777777651 0 11122456666666666553
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.28 E-value=2.6e-08 Score=97.06 Aligned_cols=104 Identities=12% Similarity=0.044 Sum_probs=56.4
Q ss_pred ccccccCCCceeecCccc------ccCCCcceEEecCCcCCccCcc----ccCCCCCccEEEcCCCCCCCc------ccC
Q 017047 251 AGTPQSKDSRFIVLPQVE------IKAGDDVRLDLRGHRVRSLIAS----GLNLQPNLEFVYLRDNMLSTL------EGI 314 (378)
Q Consensus 251 ~~T~dlrdnrfs~LP~l~------~KlssL~~LDLSgN~LssL~~s----~f~lL~nLe~LdLs~NkLs~L------~~f 314 (378)
...+++.+|+|....... .....|+.|+|++|.|...... .+..+++|++|+|++|.|... ..+
T Consensus 128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L 207 (372)
T 3un9_A 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207 (372)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence 345556666554322111 1234566677777766542211 123345677777777766532 345
Q ss_pred CCCCCCcEEeCCCCCCCC-------CCCCCCCCCCeeeccccccccc
Q 017047 315 EILTRVKVLDLSFNDFKG-------PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 315 ~~LtnLq~LdLS~N~Ls~-------~~f~~L~nLk~LdLsnNrIs~i 354 (378)
..+.+|++|||++|.|+. ..+..+.+|+.|+|.+|.|...
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 556667777777777661 2233445677777777776543
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.21 E-value=1.8e-07 Score=82.06 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=72.7
Q ss_pred hccccccccccCCC-ceee-----cCcccccCCCcceEEecCCcCCccC----ccccCCCCCccEEEcCCCCCCC-----
Q 017047 246 SGQRRAGTPQSKDS-RFIV-----LPQVEIKAGDDVRLDLRGHRVRSLI----ASGLNLQPNLEFVYLRDNMLST----- 310 (378)
Q Consensus 246 ~~~~~~~T~dlrdn-rfs~-----LP~l~~KlssL~~LDLSgN~LssL~----~s~f~lL~nLe~LdLs~NkLs~----- 310 (378)
........+++.+| .|.. +.........|++|||++|+|..-- ...+...+.|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 33444556677777 5543 3344445677888999988887421 1123334678889999988875
Q ss_pred c-ccCCCCCCCcEEeC--CCCCCCC-------CCCCCCCCCCeeecccccccc
Q 017047 311 L-EGIEILTRVKVLDL--SFNDFKG-------PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 311 L-~~f~~LtnLq~LdL--S~N~Ls~-------~~f~~L~nLk~LdLsnNrIs~ 353 (378)
+ ..+.....|++|+| ++|.|.. ..+.....|+.|+|.+|.|..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 2 56777788889999 7888882 334455778888888888763
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.19 E-value=1.4e-07 Score=91.87 Aligned_cols=104 Identities=14% Similarity=0.042 Sum_probs=61.4
Q ss_pred cccccccCCCceeec--CcccccCCCcceEEecCCcCCccCcccc-----CCCCCccEEEcCCCCCCCc------ccCCC
Q 017047 250 RAGTPQSKDSRFIVL--PQVEIKAGDDVRLDLRGHRVRSLIASGL-----NLQPNLEFVYLRDNMLSTL------EGIEI 316 (378)
Q Consensus 250 ~~~T~dlrdnrfs~L--P~l~~KlssL~~LDLSgN~LssL~~s~f-----~lL~nLe~LdLs~NkLs~L------~~f~~ 316 (378)
+...+++.+|.|... ......+.+|+.|||++|+|.......+ ....+|+.|+|++|.|... ..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 455566666665431 1111123457777777777764332222 2246677777777777542 33456
Q ss_pred CCCCcEEeCCCCCCCC-------CCCCCCCCCCeeecccccccc
Q 017047 317 LTRVKVLDLSFNDFKG-------PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 317 LtnLq~LdLS~N~Ls~-------~~f~~L~nLk~LdLsnNrIs~ 353 (378)
+++|++|||++|.|.. ..+..+.+|+.|+|.+|.|+.
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 6777777777777762 334555677777777777763
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=3.9e-07 Score=86.54 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=59.7
Q ss_pred EEecCCcCCccCc---cccCCCCCccEEEcCCCCCCCcccC----CCCCCCcEEeCCCCCCCC-CCCCCCC--CCCeeec
Q 017047 277 LDLRGHRVRSLIA---SGLNLQPNLEFVYLRDNMLSTLEGI----EILTRVKVLDLSFNDFKG-PGFEPLE--NCKALQF 346 (378)
Q Consensus 277 LDLSgN~LssL~~---s~f~lL~nLe~LdLs~NkLs~L~~f----~~LtnLq~LdLS~N~Ls~-~~f~~L~--nLk~LdL 346 (378)
|++..|++..+.. .....+++|+.|+|++|+|.++.++ ..|++|+.|+|++|+|+. ..+..|. +|+.|+|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L 227 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 227 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEEC
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEc
Confidence 7788886554332 1223468999999999999998544 489999999999999994 4445454 9999999
Q ss_pred ccccccc
Q 017047 347 CSNCILL 353 (378)
Q Consensus 347 snNrIs~ 353 (378)
.+|.|..
T Consensus 228 ~~Npl~~ 234 (267)
T 3rw6_A 228 DGNSLCD 234 (267)
T ss_dssp TTSTTGG
T ss_pred cCCcCcc
Confidence 9999975
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.92 E-value=2.3e-06 Score=74.99 Aligned_cols=87 Identities=13% Similarity=0.083 Sum_probs=68.2
Q ss_pred cccCCCcceEEecCC-cCCcc----CccccCCCCCccEEEcCCCCCCCc------ccCCCCCCCcEEeCCCCCCCC----
Q 017047 268 EIKAGDDVRLDLRGH-RVRSL----IASGLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFKG---- 332 (378)
Q Consensus 268 ~~KlssL~~LDLSgN-~LssL----~~s~f~lL~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdLS~N~Ls~---- 332 (378)
......|++|+|++| .|..- ....+...++|++|+|++|.|..- ..+.....|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345678999999999 98742 112345568999999999999752 456677899999999999992
Q ss_pred ---CCCCCCCCCCeeec--cccccccc
Q 017047 333 ---PGFEPLENCKALQF--CSNCILLE 354 (378)
Q Consensus 333 ---~~f~~L~nLk~LdL--snNrIs~i 354 (378)
..+.....|+.|+| .+|.|...
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 45667788999999 88999754
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.80 E-value=1.8e-06 Score=85.49 Aligned_cols=85 Identities=14% Similarity=-0.008 Sum_probs=59.9
Q ss_pred cCCCcceEEecCC--cCCccCccc-cCCCCCccEEEcCCCCCCCc---ccCCCCCCCcEEeCCCCCCCC----CCCCCCC
Q 017047 270 KAGDDVRLDLRGH--RVRSLIASG-LNLQPNLEFVYLRDNMLSTL---EGIEILTRVKVLDLSFNDFKG----PGFEPLE 339 (378)
Q Consensus 270 KlssL~~LDLSgN--~LssL~~s~-f~lL~nLe~LdLs~NkLs~L---~~f~~LtnLq~LdLS~N~Ls~----~~f~~L~ 339 (378)
.+.+|++|+|+++ .+....... ...+++|+.|+|++|.|+.. ..+..|++|++|+|++|.|+. ..+..+.
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence 4667777777643 244322111 23368899999999998753 345788999999999999872 2335678
Q ss_pred CCCeeeccccccccc
Q 017047 340 NCKALQFCSNCILLE 354 (378)
Q Consensus 340 nLk~LdLsnNrIs~i 354 (378)
+|+.|++.+|+|+..
T Consensus 514 ~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 514 SLRYLWVQGYRASMT 528 (592)
T ss_dssp SCCEEEEESCBCCTT
T ss_pred ccCeeECcCCcCCHH
Confidence 999999999998754
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.78 E-value=5.1e-05 Score=74.67 Aligned_cols=103 Identities=7% Similarity=0.003 Sum_probs=60.1
Q ss_pred chhccccccccccCCCceeecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCC-----------------
Q 017047 244 NLSGQRRAGTPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDN----------------- 306 (378)
Q Consensus 244 sL~~~~~~~T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~N----------------- 306 (378)
.|..-.++..+++.+|++..++...+.+..|+.|+|. +.|..|....|..|.+|+.|+|.+|
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i 253 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTV 253 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEE
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCCccCccccccccCCccEE
Confidence 3444445555566666666666665556666666666 3366666666666666666666553
Q ss_pred ----CCCCc--ccCCCCCCCcEEeCCCCCCC------C--CCCCCCCCCCeeecc
Q 017047 307 ----MLSTL--EGIEILTRVKVLDLSFNDFK------G--PGFEPLENCKALQFC 347 (378)
Q Consensus 307 ----kLs~L--~~f~~LtnLq~LdLS~N~Ls------~--~~f~~L~nLk~LdLs 347 (378)
.+..+ .+|.+|.+|+.|+|.+|.+. . ..|..|.+|+.|+|.
T Consensus 254 ~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 254 KLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp EEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred EeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 23333 34556666666666665543 1 456666666666665
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.76 E-value=7.5e-05 Score=73.47 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=61.0
Q ss_pred eeecCccc-ccCCCcceEEecCCcCC-----ccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC-
Q 017047 261 FIVLPQVE-IKAGDDVRLDLRGHRVR-----SLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK- 331 (378)
Q Consensus 261 fs~LP~l~-~KlssL~~LDLSgN~Ls-----sL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls- 331 (378)
+..++... ..|.+|+.|+|.+|.+. .+....|..|.+|+.|+|.+ .|..+ .+|.+|.+|+.|+|..| ++
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 44443333 35667777777776665 56666677777777777773 46666 56777788888888555 44
Q ss_pred -C-CCCCCCCCCCeeeccccccccc
Q 017047 332 -G-PGFEPLENCKALQFCSNCILLE 354 (378)
Q Consensus 332 -~-~~f~~L~nLk~LdLsnNrIs~i 354 (378)
+ ..|.++ +|+.|++.+|.+..+
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred EcHHhCCCC-CCCEEEEcCCCCccc
Confidence 2 667777 888888888776654
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.44 E-value=7.4e-06 Score=81.01 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=53.0
Q ss_pred cCCCcceEEecCCcCCccCccccC-CCCCccEEEcCCCCCCCc--ccC-CCCCCCcEEeCCCCCCCC----CCCCCCCCC
Q 017047 270 KAGDDVRLDLRGHRVRSLIASGLN-LQPNLEFVYLRDNMLSTL--EGI-EILTRVKVLDLSFNDFKG----PGFEPLENC 341 (378)
Q Consensus 270 KlssL~~LDLSgN~LssL~~s~f~-lL~nLe~LdLs~NkLs~L--~~f-~~LtnLq~LdLS~N~Ls~----~~f~~L~nL 341 (378)
.+.+|+.|+|++ +|.......+. .+++|+.|+|++|.|+.. ..+ ..|++|++|+|++|.++. ..+..+.+|
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 445566666655 44432211222 257788888888887543 333 567888888888888862 244557888
Q ss_pred Ceeeccccccc
Q 017047 342 KALQFCSNCIL 352 (378)
Q Consensus 342 k~LdLsnNrIs 352 (378)
+.|++.+|.++
T Consensus 509 ~~L~l~~~~~~ 519 (594)
T 2p1m_B 509 RSLWMSSCSVS 519 (594)
T ss_dssp SEEEEESSCCB
T ss_pred CEEeeeCCCCC
Confidence 88888888874
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.40 E-value=0.00011 Score=72.79 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=27.0
Q ss_pred CCccEEEcCCCCCCCc-ccCCCCCCCcEEeCCCCCCCC----CCCCCCCCCCeeecc
Q 017047 296 PNLEFVYLRDNMLSTL-EGIEILTRVKVLDLSFNDFKG----PGFEPLENCKALQFC 347 (378)
Q Consensus 296 ~nLe~LdLs~NkLs~L-~~f~~LtnLq~LdLS~N~Ls~----~~f~~L~nLk~LdLs 347 (378)
.+|+.|++.++....+ ..+..+++|++|+|++|.|+. ..+..+.+|+.|++.
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 4444444444433333 334456667777777666552 223455556666555
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.34 E-value=0.00032 Score=59.07 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=40.3
Q ss_pred eEEecCCcCC--ccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC
Q 017047 276 RLDLRGHRVR--SLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK 331 (378)
Q Consensus 276 ~LDLSgN~Ls--sL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls 331 (378)
.+|.+++.|+ .++.. ...+|+.|+|++|+|+.| ..|..+.+|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5788888887 77742 235688888888888888 45677888888888888776
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.20 E-value=7.4e-05 Score=67.25 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=66.9
Q ss_pred ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCC-CCC--cccCCCC----CCCcEEeCCCC-CCC--C
Q 017047 263 VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNM-LST--LEGIEIL----TRVKVLDLSFN-DFK--G 332 (378)
Q Consensus 263 ~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~Nk-Ls~--L~~f~~L----tnLq~LdLS~N-~Ls--~ 332 (378)
.+|........|+.|||+++.|+..--..+..|++|+.|+|.+|. |+. +..+..+ .+|+.|+|+++ +|+ +
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 456543334569999999999875433346778999999999995 553 2455553 47999999987 588 2
Q ss_pred -CCCCCCCCCCeeeccccc-ccc
Q 017047 333 -PGFEPLENCKALQFCSNC-ILL 353 (378)
Q Consensus 333 -~~f~~L~nLk~LdLsnNr-Is~ 353 (378)
..+..+.+|+.|++.+.. |+.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 556788999999998864 553
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.16 E-value=0.0017 Score=61.39 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=66.6
Q ss_pred cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC--C-CCCCCCCCCCee
Q 017047 270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK--G-PGFEPLENCKAL 344 (378)
Q Consensus 270 KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls--~-~~f~~L~nLk~L 344 (378)
.+..|..+++.. .+..+....|..|.+|+.+.|.+|.|..+ .+|.+|.+|+.++|..| ++ + ..|.+|.+|+.+
T Consensus 261 ~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 261 NCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred eeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 466788888854 48888888888889999999999888888 67899999999999766 54 3 788899999999
Q ss_pred eccccccccccc
Q 017047 345 QFCSNCILLETK 356 (378)
Q Consensus 345 dLsnNrIs~i~~ 356 (378)
.+-.| ++.+..
T Consensus 339 ~ip~~-v~~I~~ 349 (379)
T 4h09_A 339 SYPKS-ITLIES 349 (379)
T ss_dssp CCCTT-CCEECT
T ss_pred EECCc-cCEEch
Confidence 88654 554433
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.10 E-value=0.0013 Score=63.14 Aligned_cols=81 Identities=6% Similarity=0.134 Sum_probs=65.8
Q ss_pred ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC--C-CCCCCCCCCCe
Q 017047 269 IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK--G-PGFEPLENCKA 343 (378)
Q Consensus 269 ~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls--~-~~f~~L~nLk~ 343 (378)
..+..|+.+++. +.+..|....|..|.+|+.++|.+| ++.+ .+|.+|.+|+.+.|..| ++ + ..|.+|.+|+.
T Consensus 285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 285 MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred ccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 356778888885 6788888888988899999999865 6767 67899999999999766 44 2 77899999999
Q ss_pred eeccccccc
Q 017047 344 LQFCSNCIL 352 (378)
Q Consensus 344 LdLsnNrIs 352 (378)
+++.+|...
T Consensus 362 i~~~~~~~~ 370 (394)
T 4gt6_A 362 IEYSGSRSQ 370 (394)
T ss_dssp EEESSCHHH
T ss_pred EEECCceee
Confidence 999887653
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.06 E-value=0.00058 Score=65.53 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=66.2
Q ss_pred ceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCCCCCCC
Q 017047 260 RFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFKGPGFE 336 (378)
Q Consensus 260 rfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls~~~f~ 336 (378)
.+..+++..+ .+.+|+.++|..| ++.|....|..|.+|+.+.|.+| ++.+ .+|.+|.+|+.+++.+|......|.
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~ 375 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWNAIS 375 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHHTCB
T ss_pred cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehhhhh
Confidence 3666666554 5789999999864 89999989999999999999766 7777 7899999999999999876655567
Q ss_pred CCCCCCeeeccccccc
Q 017047 337 PLENCKALQFCSNCIL 352 (378)
Q Consensus 337 ~L~nLk~LdLsnNrIs 352 (378)
.+.+|+.|.+..|.+.
T Consensus 376 ~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 376 TDSGLQNLPVAPGSID 391 (394)
T ss_dssp CCCCC-----------
T ss_pred ccCCCCEEEeCCCCEE
Confidence 7788999988877654
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.05 E-value=0.00047 Score=57.99 Aligned_cols=55 Identities=22% Similarity=0.202 Sum_probs=46.8
Q ss_pred ccccCCCcee--ecCcccccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCC
Q 017047 253 TPQSKDSRFI--VLPQVEIKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLS 309 (378)
Q Consensus 253 T~dlrdnrfs--~LP~l~~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs 309 (378)
.++..++++. .+|..+ ..+|+.|||++|+|+.|+...|..+++|+.|+|.+|-+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5667788888 888643 346999999999999999999998999999999999774
No 156
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.00 E-value=0.00013 Score=72.11 Aligned_cols=99 Identities=15% Similarity=-0.013 Sum_probs=60.8
Q ss_pred cccccccCCCceeecC-cccc-cCCCcceEEecCC-cCCc--cCccccCCCCCccEEEcCCCCCCCc--c---c-CCCCC
Q 017047 250 RAGTPQSKDSRFIVLP-QVEI-KAGDDVRLDLRGH-RVRS--LIASGLNLQPNLEFVYLRDNMLSTL--E---G-IEILT 318 (378)
Q Consensus 250 ~~~T~dlrdnrfs~LP-~l~~-KlssL~~LDLSgN-~Lss--L~~s~f~lL~nLe~LdLs~NkLs~L--~---~-f~~Lt 318 (378)
+...+++.+|.|.... ..+. .+.+|+.|+|.+| .+.. +.. .+..+++|++|+|.+|.|... . . ...++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3444556666544321 1122 4677888888887 5543 221 233467888888888887653 2 2 23677
Q ss_pred CCcEEeCCCCC--CCC----CCCCCCCCCCeeecccc
Q 017047 319 RVKVLDLSFND--FKG----PGFEPLENCKALQFCSN 349 (378)
Q Consensus 319 nLq~LdLS~N~--Ls~----~~f~~L~nLk~LdLsnN 349 (378)
+|+.|+|++|. +.. ..+..+.+|+.|++.+|
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 88888888886 331 11234678888888877
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.95 E-value=0.00033 Score=68.44 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=57.2
Q ss_pred cCCCcceEEecC--Cc------CCccCcccc-CCCCCccEEEcCCCCCCCc-----ccCCCCCCCcEEeCCCCCCCC---
Q 017047 270 KAGDDVRLDLRG--HR------VRSLIASGL-NLQPNLEFVYLRDNMLSTL-----EGIEILTRVKVLDLSFNDFKG--- 332 (378)
Q Consensus 270 KlssL~~LDLSg--N~------LssL~~s~f-~lL~nLe~LdLs~NkLs~L-----~~f~~LtnLq~LdLS~N~Ls~--- 332 (378)
++..|+.|+|+. |. +..+..... ..+++|+.|+|.+|.|... .....+++|++|||++|.|..
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 567788898863 22 212211111 2368899999999988642 122467899999999999982
Q ss_pred ----CCCCCCCCCCeeeccccccc
Q 017047 333 ----PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 333 ----~~f~~L~nLk~LdLsnNrIs 352 (378)
..+.+|.+|+.|++.+|.|+
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHhhcccCCcceEEECCCCcCC
Confidence 33456789999999999886
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.76 E-value=0.00016 Score=70.66 Aligned_cols=99 Identities=10% Similarity=0.092 Sum_probs=63.7
Q ss_pred ccccCCCceeecCcccccCCCcceEEecCCcCCccCcccc--CCCCCccEEEcCC--CC------CCCc-ccC--CCCCC
Q 017047 253 TPQSKDSRFIVLPQVEIKAGDDVRLDLRGHRVRSLIASGL--NLQPNLEFVYLRD--NM------LSTL-EGI--EILTR 319 (378)
Q Consensus 253 T~dlrdnrfs~LP~l~~KlssL~~LDLSgN~LssL~~s~f--~lL~nLe~LdLs~--Nk------Ls~L-~~f--~~Ltn 319 (378)
.+.+++|....++. ..+.+|+.|+|..|.|..-....+ ..+++|+.|+|+. |. +..+ ..+ ..+++
T Consensus 176 ~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~ 253 (362)
T 2ra8_A 176 NLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253 (362)
T ss_dssp EEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTT
T ss_pred EEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCC
Confidence 34444442233444 246789999999888764221122 2468999999853 22 2222 223 35789
Q ss_pred CcEEeCCCCCCCC------CCCCCCCCCCeeecccccccc
Q 017047 320 VKVLDLSFNDFKG------PGFEPLENCKALQFCSNCILL 353 (378)
Q Consensus 320 Lq~LdLS~N~Ls~------~~f~~L~nLk~LdLsnNrIs~ 353 (378)
|++|+|.+|+|.. .....+++|+.|+|+.|.|..
T Consensus 254 Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 9999999999872 112457899999999999875
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.72 E-value=0.0031 Score=60.45 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=60.9
Q ss_pred cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC--C-CCCCCCCCCCee
Q 017047 270 KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK--G-PGFEPLENCKAL 344 (378)
Q Consensus 270 KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls--~-~~f~~L~nLk~L 344 (378)
.+..|..+.+..+ ++.|....|..|.+|+.++|.++ ++.+ .+|.+|.+|+.++|..| ++ + ..|.+|.+|+.+
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence 5677888888654 88888888888888999998755 7777 67888999999999877 55 3 778888899998
Q ss_pred ecccc
Q 017047 345 QFCSN 349 (378)
Q Consensus 345 dLsnN 349 (378)
++..|
T Consensus 372 ~lp~~ 376 (394)
T 4fs7_A 372 ELPKR 376 (394)
T ss_dssp EEEGG
T ss_pred EECCC
Confidence 88654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.63 E-value=0.0087 Score=56.51 Aligned_cols=85 Identities=7% Similarity=-0.059 Sum_probs=69.3
Q ss_pred ccCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCCC--C-CCCCCCCCCCe
Q 017047 269 IKAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDFK--G-PGFEPLENCKA 343 (378)
Q Consensus 269 ~KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~Ls--~-~~f~~L~nLk~ 343 (378)
..+..|..++|..+ ++.+....|..+..|+.+.+.++ +..+ ..|.+|.+|+.++|.+|.++ + ..|.++.+|+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 35677889999765 88888888988899999999765 6666 67899999999999999887 3 78999999999
Q ss_pred eeccccccccccc
Q 017047 344 LQFCSNCILLETK 356 (378)
Q Consensus 344 LdLsnNrIs~i~~ 356 (378)
+.|.++ ++.+..
T Consensus 315 i~lp~~-l~~I~~ 326 (379)
T 4h09_A 315 VTLPTA-LKTIQV 326 (379)
T ss_dssp EECCTT-CCEECT
T ss_pred EEcCcc-ccEEHH
Confidence 998755 554433
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.42 E-value=0.0016 Score=59.56 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=45.6
Q ss_pred CCCcceEEecCC-cCCcc----CccccCCCCCccEEEcCCCCCCCc------ccCCCCCCCcEEeCCCCCCC--C-----
Q 017047 271 AGDDVRLDLRGH-RVRSL----IASGLNLQPNLEFVYLRDNMLSTL------EGIEILTRVKVLDLSFNDFK--G----- 332 (378)
Q Consensus 271 lssL~~LDLSgN-~LssL----~~s~f~lL~nLe~LdLs~NkLs~L------~~f~~LtnLq~LdLS~N~Ls--~----- 332 (378)
...|+.|+|++| +|..- ....+..-..|+.|+|.+|+|... ..+..-+.|+.|+|++|+|. +
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 455777777764 66521 111223335677777777777532 34445566777777777777 2
Q ss_pred CCCCCCCCCCeeecccc
Q 017047 333 PGFEPLENCKALQFCSN 349 (378)
Q Consensus 333 ~~f~~L~nLk~LdLsnN 349 (378)
..+..-..|+.|+|.+|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 33444445777777654
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.20 E-value=0.003 Score=60.53 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=66.5
Q ss_pred cccCCCceeecCcccc-cCCCcceEEecCCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCCC
Q 017047 254 PQSKDSRFIVLPQVEI-KAGDDVRLDLRGHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFNDF 330 (378)
Q Consensus 254 ~dlrdnrfs~LP~l~~-KlssL~~LDLSgN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~L 330 (378)
+.+.++ +..+.+..+ .+..|+.++|.. .++.|....|..|.+|+.+.|..| +..+ .+|.+|.+|+.++|..|--
T Consensus 302 i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~ 378 (394)
T 4fs7_A 302 VKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLE 378 (394)
T ss_dssp EEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGG
T ss_pred cccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCE
Confidence 333333 555555443 678999999974 499999999999999999999887 8877 7899999999999976532
Q ss_pred C-CCCCCCCCCCCee
Q 017047 331 K-GPGFEPLENCKAL 344 (378)
Q Consensus 331 s-~~~f~~L~nLk~L 344 (378)
. ...|.++.+|+.+
T Consensus 379 ~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 379 QYRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGGBCTTCEEEEE
T ss_pred EhhheecCCCCCcEE
Confidence 2 2567777766654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.57 E-value=0.0036 Score=57.15 Aligned_cols=102 Identities=11% Similarity=0.103 Sum_probs=68.4
Q ss_pred ccccccCCC-ceee-----cCcccccCCCcceEEecCCcCCccCccc----cCCCCCccEEEcCCCCCCCc------ccC
Q 017047 251 AGTPQSKDS-RFIV-----LPQVEIKAGDDVRLDLRGHRVRSLIASG----LNLQPNLEFVYLRDNMLSTL------EGI 314 (378)
Q Consensus 251 ~~T~dlrdn-rfs~-----LP~l~~KlssL~~LDLSgN~LssL~~s~----f~lL~nLe~LdLs~NkLs~L------~~f 314 (378)
...+++.+| +|.. |-........|+.|+|++|+|..--... +..-..|+.|+|.+|+|..- +++
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL 122 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 122 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence 334556553 4432 3333345678999999999998443222 22237899999999999753 567
Q ss_pred CCCCCCcEEeCCCCC---CC--C-----CCCCCCCCCCeeeccccccc
Q 017047 315 EILTRVKVLDLSFND---FK--G-----PGFEPLENCKALQFCSNCIL 352 (378)
Q Consensus 315 ~~LtnLq~LdLS~N~---Ls--~-----~~f~~L~nLk~LdLsnNrIs 352 (378)
..-..|++|+|++|. |. + ..+..-..|..|++..|.+.
T Consensus 123 ~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 123 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 667779999999764 34 1 23344467899999887764
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=93.57 E-value=0.012 Score=52.89 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=46.0
Q ss_pred CCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCC-CCC---CCCCCC----CCCCeeeccccc-ccc
Q 017047 296 PNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFND-FKG---PGFEPL----ENCKALQFCSNC-ILL 353 (378)
Q Consensus 296 ~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~-Ls~---~~f~~L----~nLk~LdLsnNr-Is~ 353 (378)
-.|+.|||+++.|+.. ..+..|++|+.|+|+++. |+. ..+..+ .+|+.|+|.++. |+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 4799999999998654 778899999999999985 872 444443 379999999874 763
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.35 E-value=2.6 Score=33.89 Aligned_cols=48 Identities=19% Similarity=0.094 Sum_probs=40.7
Q ss_pred CCcCCccCccccCCCCCccEEEcCCCCCCCc--ccCCCCCCCcEEeCCCCC
Q 017047 281 GHRVRSLIASGLNLQPNLEFVYLRDNMLSTL--EGIEILTRVKVLDLSFND 329 (378)
Q Consensus 281 gN~LssL~~s~f~lL~nLe~LdLs~NkLs~L--~~f~~LtnLq~LdLS~N~ 329 (378)
+..++.|....|..|..|+.+.|..+ ++.| .+|.+|.+|+.+.|..+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 56788888889999999999999876 6667 789999999999997654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.35 E-value=16 Score=29.28 Aligned_cols=45 Identities=9% Similarity=-0.116 Sum_probs=36.5
Q ss_pred CCCCCc--ccCCCCCCCcEEeCCCCCCC-C-CCCCCCCCCCeeeccccc
Q 017047 306 NMLSTL--EGIEILTRVKVLDLSFNDFK-G-PGFEPLENCKALQFCSNC 350 (378)
Q Consensus 306 NkLs~L--~~f~~LtnLq~LdLS~N~Ls-~-~~f~~L~nLk~LdLsnNr 350 (378)
..++.| .+|.+|.+|+.+.|-.+--. + ..|..|.+|+.+.+....
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcCCC
Confidence 446666 78999999999999887544 3 789999999999987653
Done!