Your job contains 1 sequence.
>017048
MGGGGRVEVVSSKGCSRLFLGSVPSLRRLRGGVQSFESMSPASSSLASDSVLPANAPFSG
LVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGL
YIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAK
QFNATGKHERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGA
SYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQRLVHISADLARQVGMMLENIQNGI
AREEINGGNVPEDAQSCKNKISQEKRQQTVNLAKNGVRSRRSRRMQIRLAVKMLMNITHL
CFLMRKRMARIQKLHLQI
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017048
(378 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2097149 - symbol:AT3G43930 "AT3G43930" species... 684 2.4e-67 1
TAIR|locus:2057711 - symbol:AT2G26270 "AT2G26270" species... 600 1.9e-58 1
UNIPROTKB|E1BSJ5 - symbol:TOPBP1 "Uncharacterized protein... 168 2.9e-09 2
RGD|1562949 - symbol:Topbp1 "topoisomerase (DNA) II bindi... 164 1.6e-08 1
TAIR|locus:2031412 - symbol:MEI1 "AT1G77320" species:3702... 163 1.7e-08 2
UNIPROTKB|G3X684 - symbol:TOPBP1 "Uncharacterized protein... 159 5.7e-08 1
UNIPROTKB|Q92547 - symbol:TOPBP1 "DNA topoisomerase 2-bin... 161 8.4e-08 2
MGI|MGI:1920018 - symbol:Topbp1 "topoisomerase (DNA) II b... 163 1.3e-07 2
UNIPROTKB|Q800K6 - symbol:topbp1-A "DNA topoisomerase 2-b... 148 2.2e-07 2
UNIPROTKB|F1P482 - symbol:PAXIP1 "Uncharacterized protein... 127 5.2e-05 2
TAIR|locus:4515102911 - symbol:AT2G26267 species:3702 "Ar... 73 0.00014 2
UNIPROTKB|Q6ZW49 - symbol:PAXIP1 "PAX-interacting protein... 123 0.00014 2
UNIPROTKB|A0JNA8 - symbol:PAXIP1 "PAX-interacting protein... 122 0.00015 2
UNIPROTKB|G3MZP9 - symbol:PAXIP1 "PAX-interacting protein... 122 0.00024 2
MGI|MGI:1890430 - symbol:Paxip1 "PAX interacting (with tr... 126 0.00027 2
UNIPROTKB|E1BWT7 - symbol:ECT2 "Uncharacterized protein" ... 123 0.00029 1
RGD|1307547 - symbol:Paxip1 "PAX interacting (with transc... 124 0.00039 2
ZFIN|ZDB-GENE-040831-2 - symbol:ect2 "epithelial cell tra... 119 0.00085 1
>TAIR|locus:2097149 [details] [associations]
symbol:AT3G43930 "AT3G43930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001357
EMBL:CP002686 GenomeReviews:BA000014_GR SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 HOGENOM:HOG000029538
ProtClustDB:CLSN2683293 EMBL:AY648335 IPI:IPI00532614
RefSeq:NP_189979.3 UniGene:At.50849 ProteinModelPortal:Q6DSR3
SMR:Q6DSR3 EnsemblPlants:AT3G43930.1 GeneID:823509
KEGG:ath:AT3G43930 TAIR:At3g43930 InParanoid:Q6DSR3 OMA:RISEPFS
PhylomeDB:Q6DSR3 Genevestigator:Q6DSR3 Uniprot:Q6DSR3
Length = 502
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 150/296 (50%), Positives = 191/296 (64%)
Query: 1 MGGGGRVEVVSSKGCSRLFLGSVPSLRRLRGGVQXXXXXXXXXXXXXXXXVLPANAPFSG 60
M G R EV+ +K CS+L + PSLR R V ++ PFSG
Sbjct: 1 MEGVRRAEVIDTKRCSKLRVDFTPSLRGSRISEPFSPATTTTTTSRFHPPVR-SDGPFSG 59
Query: 61 LVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGL 120
L+ICVTGLSKEARKQV EATERLGG+YS LH CTHLVVQ++ GRKFEHALKHG R L
Sbjct: 60 LIICVTGLSKEARKQVKEATERLGGEYSALLHSLCTHLVVQNYDGRKFEHALKHGRRETL 119
Query: 121 YIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAK 180
YIVTLGWFVDSV RNV+LSES Y VK+ +E ++ D L + +A E G+ +
Sbjct: 120 YIVTLGWFVDSVCRNVKLSESFYAVKNPEETKVNEDGLKSV--YA-VEKLHRGGGV---Q 173
Query: 181 QFNATGKHERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGA 240
TG S + LSG S+++D+D+SEE+R +V + A GA L+ QWF+GC A
Sbjct: 174 GIEVTG--------SKDLALSGYSVFIDADISEEVRRQVSQVAVEGGAKLMTQWFIGCNA 225
Query: 241 SYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQRLVHISADLARQVGMMLENI 296
S+VVCE SV +Y+GHS+NLVTP+W+ KT +EK Q LV +S DLAR + M+EN+
Sbjct: 226 SHVVCEGGSVLRYLGHSSNLVTPLWLQKTLEEKPTQNLVQMSDDLARDLRTMIENL 281
>TAIR|locus:2057711 [details] [associations]
symbol:AT2G26270 "AT2G26270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
"extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002685
GenomeReviews:CT485783_GR EMBL:AC004484 UniGene:At.24275
UniGene:At.49354 IPI:IPI00518955 PIR:D84658 RefSeq:NP_180195.1
ProteinModelPortal:O64844 SMR:O64844 EnsemblPlants:AT2G26270.1
GeneID:817167 KEGG:ath:AT2G26270 TAIR:At2g26270 eggNOG:NOG302115
HOGENOM:HOG000029538 InParanoid:O64844 OMA:QVLDHIY PhylomeDB:O64844
ProtClustDB:CLSN2683293 Genevestigator:O64844 Uniprot:O64844
Length = 470
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 122/249 (48%), Positives = 174/249 (69%)
Query: 105 GRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGF 164
GRKFEH LKHG+RNGL++VT+GWFVDSV+RN R+SESLY VK + ++ D+L+R+
Sbjct: 34 GRKFEHTLKHGARNGLFVVTIGWFVDSVKRNFRMSESLYNVKQLRQNCEKGDELSRVFDL 93
Query: 165 AGTENSCLPAGIYEAKQFNATGKHER------DSNRSMNSTLSGCSMYVDSDVSEELRNK 218
E C P I +A F + K+ + +S S++ +L+ MYVDSD+S+ELR K
Sbjct: 94 ---ETICRPRQI-QAVHFGTSTKNHQVSSSGTESGTSVDMSLADHCMYVDSDISDELRLK 149
Query: 219 VFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQRL 278
V + A +GA +++ WF+GC AS+VVCE S+Q+Y+GH+ +V+P+WVLKT EKH QRL
Sbjct: 150 VLKVAGEQGAKVIDSWFIGCNASFVVCEGASIQRYLGHAKTIVSPLWVLKTV-EKHRQRL 208
Query: 279 VHISADLARQVGMMLENIQNGIAREEING-GNVPEDAQSCKNKISQEKRQQTVNLAKNGV 337
VH+S DLARQ+G+MLEN ++G A E+I+G GN E +S +S+++R++TVN+AK GV
Sbjct: 209 VHMSPDLARQLGLMLENFEDGAANEKISGQGNSQEAFKS--RSLSKQERKETVNIAKTGV 266
Query: 338 XXXXXXXMQ 346
MQ
Sbjct: 267 RRRRARHMQ 275
>UNIPROTKB|E1BSJ5 [details] [associations]
symbol:TOPBP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] [GO:0001673 "male germ cell nucleus" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] InterPro:IPR001357
Pfam:PF00533 GO:GO:0016605 GO:GO:0006974 GO:GO:0010212
GO:GO:0001673 GO:GO:0000794 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GeneTree:ENSGT00700000104481 InterPro:IPR026993
PANTHER:PTHR13561:SF6 EMBL:AADN02001240 IPI:IPI00571512
ProteinModelPortal:E1BSJ5 Ensembl:ENSGALT00000019158 Uniprot:E1BSJ5
Length = 508
Score = 168 (64.2 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 38/91 (41%), Positives = 52/91 (57%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHP-QCTHLVVQSFGGRKFEHALKHGS 116
F G ICVTGLS RK+V T GGQYS L +CTHL+VQ G+K+E A K
Sbjct: 199 FLGCTICVTGLSSSDRKEVQRLTAEHGGQYSGQLKMNECTHLIVQEPKGQKYECAKKWN- 257
Query: 117 RNGLYIVTLGWFVDSVRRNVRLSESLYTVKS 147
++ V + WF DS+ + E++Y ++S
Sbjct: 258 ---VHCVPVQWFSDSIEKGFCQDETMYKIES 285
Score = 37 (18.1 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 152 GMHLDKLNRLVGFAG 166
G LDK+ RL+ G
Sbjct: 371 GRKLDKMRRLINCGG 385
>RGD|1562949 [details] [associations]
symbol:Topbp1 "topoisomerase (DNA) II binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000794 "condensed nuclear
chromosome" evidence=ISO] [GO:0001673 "male germ cell nucleus"
evidence=ISO] [GO:0005694 "chromosome" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0010212
"response to ionizing radiation" evidence=ISO] [GO:0016605 "PML
body" evidence=ISO] InterPro:IPR001357 Pfam:PF00533 RGD:1562949
GO:GO:0016605 GO:GO:0006974 GO:GO:0010212 GO:GO:0001673
GO:GO:0000794 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00700000104481 InterPro:IPR026993
PANTHER:PTHR13561:SF6 OrthoDB:EOG4FXR6Q IPI:IPI00370853
ProteinModelPortal:D3ZRG0 Ensembl:ENSRNOT00000013265
UCSC:RGD:1562949 Uniprot:D3ZRG0
Length = 1516
Score = 164 (62.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 61/224 (27%), Positives = 104/224 (46%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHP-QCTHLVVQSFGGRKFEHALKHGS 116
F G +ICVTGL+ RK V + T + GGQY L +CTHL+VQ G+K+E A
Sbjct: 200 FLGCIICVTGLNGIHRKTVQQLTAKHGGQYMGQLKMNECTHLIVQEPKGQKYECA----R 255
Query: 117 RNGLYIVTLGWFVDSVRRNVRLSESLY------TVKSIDE-------HGMHLDKLNRLVG 163
R ++ VTL WF DS+ + ES+Y VK++ + G +L +
Sbjct: 256 RWNVHCVTLQWFHDSIEKGFCQDESIYKAEPRAAVKTVPDTSTPTAQSGTEYHRLADVSH 315
Query: 164 FAGTENSCLPAGIYEA--KQFNATGKHERDSNRSM----NSTLSGCSMYVDSDVSEELRN 217
+ SC+ ++ + + T ++ + + SM L GC +Y+ +L +
Sbjct: 316 ISNINGSCVNETMFGSTTSKLECTLENLENLDISMFQAPEDLLDGCRIYLCGFSGRKL-D 374
Query: 218 KVFEAATNEGATLVNQWFVGCGASYVVCE--EDSVQKYMGHSNN 259
K+ + G NQ + ++V+ ED V+++ S++
Sbjct: 375 KLRRLINSGGGVRFNQ--LNEDVTHVIMGDYEDDVRQFWSKSSH 416
>TAIR|locus:2031412 [details] [associations]
symbol:MEI1 "AT1G77320" species:3702 "Arabidopsis
thaliana" [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005622 "intracellular" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0007131 "reciprocal meiotic
recombination" evidence=TAS] [GO:0007140 "male meiosis"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=ISS] [GO:0007143 "female meiosis" evidence=IMP]
InterPro:IPR001357 Pfam:PF00533 EMBL:CP002684 GO:GO:0006974
GO:GO:0016853 GO:GO:0007143 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 KO:K10728 IPI:IPI00533208 RefSeq:NP_177856.2
UniGene:At.34497 ProteinModelPortal:F4I701 SMR:F4I701 PRIDE:F4I701
EnsemblPlants:AT1G77320.1 GeneID:844068 KEGG:ath:AT1G77320
OMA:CCLAMDG Uniprot:F4I701
Length = 972
Score = 163 (62.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 36/89 (40%), Positives = 49/89 (55%)
Query: 57 PFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGS 116
PFSGL ICVT + + RK + + GG YS +L CTHL+ + G K++ A K G
Sbjct: 184 PFSGLTICVTRIPADERKGMEKVISEYGGSYSAELTKSCTHLIADAAEGDKYKVARKWGH 243
Query: 117 RNGLYIVTLGWFVDSVRRNVRLSESLYTV 145
+ IVT WF S+ + V L+E Y V
Sbjct: 244 ---IQIVTRKWFQQSIDKKVCLNEESYPV 269
Score = 43 (20.2 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 12/54 (22%), Positives = 19/54 (35%)
Query: 172 LPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATN 225
L G+ + N K + S + C+ DSD+ VF + N
Sbjct: 275 LTRGVRDLGVHNGLEKFPSAATASAADSYVSCAQSRDSDIEASASQNVFPTSMN 328
>UNIPROTKB|G3X684 [details] [associations]
symbol:TOPBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016605 "PML body" evidence=IEA] [GO:0010212 "response
to ionizing radiation" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] InterPro:IPR001357 Pfam:PF00533 GO:GO:0016605
GO:GO:0006974 GO:GO:0010212 GO:GO:0001673 GO:GO:0000794
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00700000104481 InterPro:IPR016126 SUPFAM:SSF48201
InterPro:IPR026993 PANTHER:PTHR13561:SF6 OMA:CAQEYKH
EMBL:DAAA02003073 EMBL:DAAA02003074 Ensembl:ENSBTAT00000000686
Uniprot:G3X684
Length = 1524
Score = 159 (61.0 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 67/235 (28%), Positives = 104/235 (44%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHP-QCTHLVVQS---FGGRKFEHALK 113
F G +ICVTGL RK V + T + GGQY L +CTHL+VQ G+K+E A
Sbjct: 200 FLGCIICVTGLCTLDRKSVQQLTVKHGGQYMGQLKMNECTHLIVQEPKDIIGQKYECA-- 257
Query: 114 HGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLP 173
R ++ VT WF DSV + ES+Y + E + + G T +S
Sbjct: 258 --KRWNVHCVTTQWFFDSVEKGFCQDESIYKTEPRSE-AKSMPDTSTPTGQINTIDSRTL 314
Query: 174 AGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDS-DVS-----EELRN--KVFEAATN 225
+ + NA+ +E N S+NS L +++ D+S E+L + +++ N
Sbjct: 315 SDVSHISNINASCINESICN-SVNSKLEPTIENLENLDISAFQAPEDLLDGCRIYLCGFN 373
Query: 226 -----EGATLVNQWFVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHV 275
+ L+N G G + ED +G ++ + W K+A HV
Sbjct: 374 GRKLDKLRRLINS---GGGVRFNQLNEDVTHVIVGDDDDELKQFWD-KSAHRPHV 424
>UNIPROTKB|Q92547 [details] [associations]
symbol:TOPBP1 "DNA topoisomerase 2-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000794 "condensed
nuclear chromosome" evidence=IEA] [GO:0001673 "male germ cell
nucleus" evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA]
[GO:0005815 "microtubule organizing center" evidence=IEA]
[GO:0006281 "DNA repair" evidence=NAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010212 "response to ionizing radiation"
evidence=IDA] [GO:0016605 "PML body" evidence=IDA] [GO:0005694
"chromosome" evidence=IDA] [GO:0005634 "nucleus" evidence=TAS]
[GO:0006259 "DNA metabolic process" evidence=TAS] [GO:0008022
"protein C-terminus binding" evidence=TAS] InterPro:IPR001357
Pfam:PF00533 GO:GO:0005737 GO:GO:0005694 GO:GO:0003677
GO:GO:0016605 GO:GO:0006281 GO:GO:0005815 GO:GO:0010212
GO:GO:0001673 GO:GO:0000794 GO:GO:0008022 GO:GO:0000922
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
Pathway_Interaction_DB:bard1pathway EMBL:AC016255 PDB:3AL3
PDBsum:3AL3 InterPro:IPR016126 SUPFAM:SSF48201 eggNOG:NOG288412
CTD:11073 HOVERGEN:HBG067053 KO:K10728 InterPro:IPR026993
PANTHER:PTHR13561:SF6 EMBL:AB019397 EMBL:D87448 EMBL:AK302584
EMBL:AC083905 IPI:IPI00293921 RefSeq:NP_008958.2 UniGene:Hs.593379
PDB:1WF6 PDB:2XNH PDB:2XNK PDB:3AL2 PDB:3JVE PDB:3OLC PDB:3PD7
PDBsum:1WF6 PDBsum:2XNH PDBsum:2XNK PDBsum:3AL2 PDBsum:3JVE
PDBsum:3OLC PDBsum:3PD7 ProteinModelPortal:Q92547 SMR:Q92547
DIP:DIP-24263N IntAct:Q92547 MINT:MINT-275958 STRING:Q92547
PhosphoSite:Q92547 DMDM:296453012 PaxDb:Q92547 PRIDE:Q92547
Ensembl:ENST00000260810 GeneID:11073 KEGG:hsa:11073 UCSC:uc003eps.3
GeneCards:GC03M133319 H-InvDB:HIX0003693 HGNC:HGNC:17008
HPA:CAB022451 MIM:607760 neXtProt:NX_Q92547 PharmGKB:PA134934073
HOGENOM:HOG000154662 InParanoid:Q92547 OMA:CAQEYKH
OrthoDB:EOG4FXR6Q EvolutionaryTrace:Q92547 GenomeRNAi:11073
NextBio:42094 ArrayExpress:Q92547 Bgee:Q92547 CleanEx:HS_TOPBP1
Genevestigator:Q92547 GermOnline:ENSG00000163781 Uniprot:Q92547
Length = 1522
Score = 161 (61.7 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 48/144 (33%), Positives = 69/144 (47%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHP-QCTHLVVQSFGGRKFEHALKHGS 116
F G +ICVTGL RK+V + T + GGQY L +CTHL+VQ G+K+E A
Sbjct: 200 FLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECA----K 255
Query: 117 RNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGI 176
R ++ VT WF DS+ + ES+Y + E + + T +S + +
Sbjct: 256 RWNVHCVTTQWFFDSIEKGFCQDESIYKTEPRPE-AKTMPNSSTPTSQINTIDSRTLSDV 314
Query: 177 YEAKQFNATGKHERDSNRSMNSTL 200
NA+ E N S+NS L
Sbjct: 315 SNISNINASCVSESICN-SLNSKL 337
Score = 43 (20.2 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 240 ASYVVCEEDSVQKYMGHSN-NL--VTPVWVLKTAKEKHVQRLVHISADLARQVGMMLEN- 295
+++++ +E KY NL VT W+L+TA+ H + + + LE
Sbjct: 692 STHLILKERGGSKYEAAKKWNLPAVTIAWLLETARTGKRADESHFLIENSTKEERSLETE 751
Query: 296 IQNGI 300
I NGI
Sbjct: 752 ITNGI 756
>MGI|MGI:1920018 [details] [associations]
symbol:Topbp1 "topoisomerase (DNA) II binding protein 1"
species:10090 "Mus musculus" [GO:0000794 "condensed nuclear
chromosome" evidence=IDA] [GO:0001673 "male germ cell nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0007131
"reciprocal meiotic recombination" evidence=ISA] [GO:0010212
"response to ionizing radiation" evidence=ISO] [GO:0016605 "PML
body" evidence=ISO] InterPro:IPR001357 MGI:MGI:1920018 Pfam:PF00533
GO:GO:0005737 GO:GO:0003677 GO:GO:0016605 GO:GO:0006281
GO:GO:0005815 GO:GO:0010212 GO:GO:0001673 GO:GO:0000794
GO:GO:0000922 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0007131 GeneTree:ENSGT00700000104481 eggNOG:NOG288412
CTD:11073 HOVERGEN:HBG067053 KO:K10728 InterPro:IPR026993
PANTHER:PTHR13561:SF6 OMA:CAQEYKH OrthoDB:EOG4FXR6Q EMBL:AK129104
EMBL:BC006707 EMBL:BC007170 EMBL:BC026608 EMBL:BC049797
EMBL:BC062111 EMBL:AK084654 EMBL:AK085031 IPI:IPI00453855
RefSeq:NP_795953.2 UniGene:Mm.259893 ProteinModelPortal:Q6ZQF0
SMR:Q6ZQF0 IntAct:Q6ZQF0 STRING:Q6ZQF0 PhosphoSite:Q6ZQF0
PaxDb:Q6ZQF0 PRIDE:Q6ZQF0 Ensembl:ENSMUST00000035164 GeneID:235559
KEGG:mmu:235559 UCSC:uc009rgl.1 InParanoid:Q6ZQF0 NextBio:382747
Bgee:Q6ZQF0 CleanEx:MM_TOPBP1 Genevestigator:Q6ZQF0
GermOnline:ENSMUSG00000032555 Uniprot:Q6ZQF0
Length = 1515
Score = 163 (62.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 38/91 (41%), Positives = 53/91 (58%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHP-QCTHLVVQSFGGRKFEHALKHGS 116
F G +ICVTGL+ RK V + T + GGQY L +CTHL+VQ G+K+E A
Sbjct: 200 FLGCIICVTGLNGIHRKTVQQLTAKHGGQYMGQLKMNECTHLIVQEPKGQKYECA----R 255
Query: 117 RNGLYIVTLGWFVDSVRRNVRLSESLYTVKS 147
R ++ VTL WF DS+ + ES+Y ++
Sbjct: 256 RWNVHCVTLQWFHDSIEKGFCQDESIYKAET 286
Score = 39 (18.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 152 GMHLDKLNRLVGFAG 166
G LDKL RL+ G
Sbjct: 370 GRKLDKLRRLINSGG 384
>UNIPROTKB|Q800K6 [details] [associations]
symbol:topbp1-A "DNA topoisomerase 2-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0000076 "DNA replication
checkpoint" evidence=IMP] [GO:0000785 "chromatin" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=IMP;IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0019900 "kinase
binding" evidence=IPI] [GO:0030174 "regulation of DNA-dependent DNA
replication initiation" evidence=IMP] [GO:0033138 "positive
regulation of peptidyl-serine phosphorylation" evidence=IDA]
[GO:0035563 "positive regulation of chromatin binding"
evidence=IMP] [GO:0045860 "positive regulation of protein kinase
activity" evidence=IDA] [GO:0071163 "DNA replication preinitiation
complex assembly" evidence=IMP] [GO:0071165 "GINS complex assembly"
evidence=IMP] [GO:0071168 "protein localization to chromatin"
evidence=IMP] [GO:0005656 "pre-replicative complex" evidence=IMP]
[GO:0006267 "pre-replicative complex assembly" evidence=IMP]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=IMP] InterPro:IPR001357 Pfam:PF00533 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006281 GO:GO:0000785
GO:GO:0045860 GO:GO:0003682 GO:GO:0006974 GO:GO:0005815
GO:GO:0007049 GO:GO:0006270 GO:GO:0033138 GO:GO:0000922
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000076
GO:GO:0071163 GO:GO:0030174 GO:GO:0035563 GO:GO:0071168
GO:GO:0071165 EMBL:AB091779 EMBL:BC170556 EMBL:BC170557
RefSeq:NP_001082568.1 UniGene:Xl.11481 ProteinModelPortal:Q800K6
IntAct:Q800K6 GeneID:398573 KEGG:xla:398573 CTD:11073
Xenbase:XB-GENE-990641 HOVERGEN:HBG067053 KO:K10728
InterPro:IPR026993 PANTHER:PTHR13561:SF6 Uniprot:Q800K6
Length = 1513
Score = 148 (57.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHP-QCTHLVVQSFGGRKFEHALKHGS 116
F G ICVTGLS RK+V T GG+Y+ L + THL+VQ G+K+E A K
Sbjct: 199 FRGCTICVTGLSSLDRKEVQRLTALHGGEYTGQLKMNESTHLIVQEAKGQKYECARKWN- 257
Query: 117 RNGLYIVTLGWFVDSVRRNVRLSESLYTVK 146
++ +++ WF DS+ + E++Y ++
Sbjct: 258 ---VHCISVQWFFDSIEKGFCQDETMYKIE 284
Score = 53 (23.7 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 35/128 (27%), Positives = 48/128 (37%)
Query: 147 SIDEHGMHLDKLN--RLVGFAGTENSCLPAGIYEAKQFNATGKHERDS-------NRSMN 197
SI + MH D G A T ++ + G++ KQF G E D +S
Sbjct: 510 SISQMSMHEDMTTCTSQSGLADT-STIIEGGLFSRKQFMVLGFLEEDEACIIDIIKKSAG 568
Query: 198 STLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMG-H 256
LS + L E+ E T N W +G +C E +K + H
Sbjct: 569 KVLSSQKRAIADYAVVPLLGCEVESTVGEVVT--NAW-LG------MCIEQ--EKLLDPH 617
Query: 257 SNNLVTPV 264
SN L TPV
Sbjct: 618 SNALFTPV 625
>UNIPROTKB|F1P482 [details] [associations]
symbol:PAXIP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000416 "positive regulation of histone H3-K36
methylation" evidence=IEA] [GO:0001570 "vasculogenesis"
evidence=IEA] [GO:0010212 "response to ionizing radiation"
evidence=IEA] [GO:0030330 "DNA damage response, signal transduction
by p53 class mediator" evidence=IEA] [GO:0031398 "positive
regulation of protein ubiquitination" evidence=IEA] [GO:0035066
"positive regulation of histone acetylation" evidence=IEA]
[GO:0035097 "histone methyltransferase complex" evidence=IEA]
[GO:0043542 "endothelial cell migration" evidence=IEA] [GO:0045830
"positive regulation of isotype switching" evidence=IEA]
[GO:0051568 "histone H3-K4 methylation" evidence=IEA] [GO:0051571
"positive regulation of histone H3-K4 methylation" evidence=IEA]
[GO:0060261 "positive regulation of transcription initiation from
RNA polymerase II promoter" evidence=IEA] [GO:0060612 "adipose
tissue development" evidence=IEA] [GO:0060717 "chorion development"
evidence=IEA] InterPro:IPR001357 Pfam:PF00533 GO:GO:0010212
GO:GO:0035066 GO:GO:0031398 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0051568 GO:GO:0030330 GO:GO:0051571
GO:GO:0043542 GO:GO:0035097 GO:GO:0060261 OMA:DIQQINR GO:GO:0000416
GO:GO:0045830 GeneTree:ENSGT00600000084454 EMBL:AADN02000335
EMBL:AADN02000336 EMBL:AADN02000337 IPI:IPI00594414
Ensembl:ENSGALT00000010241 Uniprot:F1P482
Length = 1062
Score = 127 (49.8 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSR 117
F G+ C++ +S E R + GG +L+ +CTHL+V G K+E A KH S
Sbjct: 104 FFGVTACLSQVSSEDRNTLWALITFYGGNCQLNLNKKCTHLIVPEPKGEKYECACKHDS- 162
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLY 143
+ IVT W VDSV + E+ Y
Sbjct: 163 --IKIVTPEWVVDSVADKAKKEETPY 186
Score = 49 (22.3 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 296 IQNGIAREEINGGNVPEDAQSCKNKISQEKRQQTV 330
+Q I + I GG V E AQ C + I+ K +TV
Sbjct: 888 VQQYIKKLYILGGEVAESAQKCTHLIAS-KVTRTV 921
Score = 45 (20.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 236 VGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAK-EKHVQR 277
V C V+ ++ S +K M H N P +L + + + H+ R
Sbjct: 1004 VECAGGKVLSKQPSFRKLMEHKQNKSLPEIILISCENDLHLCR 1046
Score = 39 (18.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 282 SADLARQVGMMLENIQNGIAREEINGGNVPED---AQSCKNKISQEKRQQTVNLAKN 335
+AD A+ M ++ + ++E N P + A + K ++ Q K +NL N
Sbjct: 247 TADKAKGELMFDDSSDSSPEKQERNLNWTPAEVPQASTAKRRLPQGKDSGLINLCAN 303
>TAIR|locus:4515102911 [details] [associations]
symbol:AT2G26267 species:3702 "Arabidopsis thaliana"
[GO:0005739 "mitochondrion" evidence=ISM] EMBL:CP002685
GenomeReviews:CT485783_GR EMBL:AC004484 IPI:IPI00892206
RefSeq:NP_001118389.1 UniGene:At.73752 EnsemblPlants:AT2G26267.1
GeneID:6240389 KEGG:ath:AT2G26267 TAIR:At2g26267
Genevestigator:B3H6S1 Uniprot:B3H6S1
Length = 68
Score = 73 (30.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 14/17 (82%), Positives = 15/17 (88%)
Query: 54 ANAPFSGLVICVTGLSK 70
+N PFS LVICVTGLSK
Sbjct: 37 SNGPFSSLVICVTGLSK 53
Score = 46 (21.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 7 VEVVSSKGCSRLF 19
V ++ SKGCS+LF
Sbjct: 9 VGLIDSKGCSKLF 21
>UNIPROTKB|Q6ZW49 [details] [associations]
symbol:PAXIP1 "PAX-interacting protein 1" species:9606
"Homo sapiens" [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001570 "vasculogenesis"
evidence=IEA] [GO:0043542 "endothelial cell migration"
evidence=IEA] [GO:0060612 "adipose tissue development"
evidence=IEA] [GO:0060717 "chorion development" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010212 "response to
ionizing radiation" evidence=IDA] [GO:0030330 "DNA damage response,
signal transduction by p53 class mediator" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000416 "positive
regulation of histone H3-K36 methylation" evidence=ISS] [GO:0031398
"positive regulation of protein ubiquitination" evidence=ISS]
[GO:0035066 "positive regulation of histone acetylation"
evidence=ISS] [GO:0045830 "positive regulation of isotype
switching" evidence=ISS] [GO:0051571 "positive regulation of
histone H3-K4 methylation" evidence=ISS] [GO:0060261 "positive
regulation of transcription initiation from RNA polymerase II
promoter" evidence=ISS;IMP] [GO:0035097 "histone methyltransferase
complex" evidence=IDA] [GO:0051568 "histone H3-K4 methylation"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001357 Pfam:PF00533 GO:GO:0006281 GO:GO:0060612
GO:GO:0006351 GO:GO:0010212 GO:GO:0006310 GO:GO:0035066
GO:GO:0001570 GO:GO:0031398 GO:GO:0016363 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0051568 GO:GO:0030330
eggNOG:NOG310206 GO:GO:0051571 GO:GO:0043542 GO:GO:0035097
GO:GO:0060261 PDB:3SQD PDBsum:3SQD KO:K14972 CTD:22976
HOVERGEN:HBG061191 EMBL:AK123044 EMBL:AK123600 EMBL:AK307417
EMBL:BX538201 EMBL:BX640616 EMBL:AC093726 EMBL:U80735 EMBL:BC008328
EMBL:BC033781 IPI:IPI00182798 IPI:IPI00479772 IPI:IPI00854696
IPI:IPI00894296 IPI:IPI00973545 RefSeq:NP_031375.3
UniGene:Hs.443881 ProteinModelPortal:Q6ZW49 SMR:Q6ZW49
DIP:DIP-41786N IntAct:Q6ZW49 MINT:MINT-276076 STRING:Q6ZW49
PhosphoSite:Q6ZW49 DMDM:74723057 PRIDE:Q6ZW49
Ensembl:ENST00000397192 Ensembl:ENST00000404141 GeneID:22976
KEGG:hsa:22976 UCSC:uc003wlr.1 UCSC:uc022aqf.1 UCSC:uc022aqh.1
GeneCards:GC07M154735 H-InvDB:HIX0007243 HGNC:HGNC:8624
HPA:HPA006694 MIM:608254 neXtProt:NX_Q6ZW49 PharmGKB:PA32964
OMA:DIQQINR ChiTaRS:PAXIP1 GenomeRNAi:22976 NextBio:43785
ArrayExpress:Q6ZW49 Bgee:Q6ZW49 CleanEx:HS_PAXIP1
Genevestigator:Q6ZW49 GO:GO:0060717 GO:GO:0000416 GO:GO:0045830
Uniprot:Q6ZW49
Length = 1069
Score = 123 (48.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 29/86 (33%), Positives = 42/86 (48%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSR 117
F G+ C++ +S E R + GG L+ +CTHL+V G K+E ALK S
Sbjct: 99 FFGITACLSQVSSEDRSALWALVTFYGGDCQLTLNKKCTHLIVPEPKGEKYECALKRAS- 157
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLY 143
+ IVT W +D V + E+ Y
Sbjct: 158 --IKIVTPDWVLDCVSEKTKKDEAFY 181
Score = 49 (22.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 296 IQNGIAREEINGGNVPEDAQSCKNKISQEKRQQTV 330
+Q I + I GG V E AQ C + I+ K +TV
Sbjct: 879 VQQYIKKLYILGGEVAESAQKCTHLIAS-KVTRTV 912
Score = 43 (20.2 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 236 VGCGASYVVCEEDSVQKYMGHS-NNLVTPVWVLKTAKEKHVQR 277
V C V+ ++ S +K M H N+ ++ + ++ + H+ R
Sbjct: 995 VECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCR 1037
>UNIPROTKB|A0JNA8 [details] [associations]
symbol:PAXIP1 "PAX-interacting protein 1" species:9913 "Bos
taurus" [GO:0016363 "nuclear matrix" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR001357 Pfam:PF00533 GO:GO:0006355
GO:GO:0006281 GO:GO:0006351 GO:GO:0006310 GO:GO:0016363
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 eggNOG:NOG310206
KO:K14972 EMBL:BC126589 IPI:IPI00711253 RefSeq:NP_001071385.1
UniGene:Bt.21228 ProteinModelPortal:A0JNA8 STRING:A0JNA8
PRIDE:A0JNA8 GeneID:513213 KEGG:bta:513213 CTD:22976
HOGENOM:HOG000115463 HOVERGEN:HBG061191 InParanoid:A0JNA8
OrthoDB:EOG4CRKZF NextBio:20870752 ArrayExpress:A0JNA8
Uniprot:A0JNA8
Length = 984
Score = 122 (48.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSR 117
F G+ C++ +S E R + GG +L+ +CTHLVV G K+E AL+ S
Sbjct: 99 FFGITACLSQVSPEDRSALWAMLTFHGGGCQLNLNRKCTHLVVPEPKGEKYECALRRAS- 157
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLY 143
+ IVT W +D + R E+LY
Sbjct: 158 --IKIVTPDWVLDCISEKTRKDEALY 181
Score = 49 (22.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 296 IQNGIAREEINGGNVPEDAQSCKNKISQEKRQQTV 330
+Q I + I GG V E AQ C + I+ K +TV
Sbjct: 794 VQQYIKKLYILGGEVAESAQKCTHLIAS-KVTRTV 827
Score = 41 (19.5 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 236 VGCGASYVVCEEDSVQKYMGHSNNL-VTPVWVLKTAKEKHVQR 277
V C V+ + S +K M H N ++ + ++ + H+ R
Sbjct: 910 VECAGGKVLSRQPSFRKLMEHKQNKSLSEIVLISCENDLHLCR 952
>UNIPROTKB|G3MZP9 [details] [associations]
symbol:PAXIP1 "PAX-interacting protein 1" species:9913 "Bos
taurus" [GO:0060717 "chorion development" evidence=IEA] [GO:0060612
"adipose tissue development" evidence=IEA] [GO:0060261 "positive
regulation of transcription initiation from RNA polymerase II
promoter" evidence=IEA] [GO:0051571 "positive regulation of histone
H3-K4 methylation" evidence=IEA] [GO:0051568 "histone H3-K4
methylation" evidence=IEA] [GO:0045830 "positive regulation of
isotype switching" evidence=IEA] [GO:0043542 "endothelial cell
migration" evidence=IEA] [GO:0035097 "histone methyltransferase
complex" evidence=IEA] [GO:0035066 "positive regulation of histone
acetylation" evidence=IEA] [GO:0031398 "positive regulation of
protein ubiquitination" evidence=IEA] [GO:0030330 "DNA damage
response, signal transduction by p53 class mediator" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0000416 "positive
regulation of histone H3-K36 methylation" evidence=IEA]
InterPro:IPR001357 Pfam:PF00533 GO:GO:0060612 GO:GO:0010212
GO:GO:0035066 GO:GO:0001570 GO:GO:0031398 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0051568 GO:GO:0030330
GO:GO:0051571 GO:GO:0043542 GO:GO:0035097 GO:GO:0060261 OMA:DIQQINR
GO:GO:0060717 GO:GO:0000416 GO:GO:0045830
GeneTree:ENSGT00600000084454 EMBL:DAAA02012116
Ensembl:ENSBTAT00000064484 Uniprot:G3MZP9
Length = 1195
Score = 122 (48.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSR 117
F G+ C++ +S E R + GG +L+ +CTHLVV G K+E AL+ S
Sbjct: 11 FFGITACLSQVSPEDRSALWAMLTFHGGGCQLNLNRKCTHLVVPEPKGEKYECALRRAS- 69
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLY 143
+ IVT W +D + R E+LY
Sbjct: 70 --IKIVTPDWVLDCISEKTRKDEALY 93
Score = 49 (22.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 296 IQNGIAREEINGGNVPEDAQSCKNKISQEKRQQTV 330
+Q I + I GG V E AQ C + I+ K +TV
Sbjct: 1005 VQQYIKKLYILGGEVAESAQKCTHLIAS-KVTRTV 1038
>MGI|MGI:1890430 [details] [associations]
symbol:Paxip1 "PAX interacting (with
transcription-activation domain) protein 1" species:10090 "Mus
musculus" [GO:0000416 "positive regulation of histone H3-K36
methylation" evidence=IMP] [GO:0001570 "vasculogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0030330 "DNA damage response, signal transduction
by p53 class mediator" evidence=ISO] [GO:0031398 "positive
regulation of protein ubiquitination" evidence=IMP] [GO:0035066
"positive regulation of histone acetylation" evidence=IMP]
[GO:0035097 "histone methyltransferase complex" evidence=ISO;IDA]
[GO:0043542 "endothelial cell migration" evidence=IMP] [GO:0045830
"positive regulation of isotype switching" evidence=IMP]
[GO:0051568 "histone H3-K4 methylation" evidence=ISO] [GO:0051571
"positive regulation of histone H3-K4 methylation" evidence=IMP]
[GO:0060261 "positive regulation of transcription initiation from
RNA polymerase II promoter" evidence=ISO;IMP] [GO:0060612 "adipose
tissue development" evidence=IMP] [GO:0060717 "chorion development"
evidence=IMP] InterPro:IPR001357 MGI:MGI:1890430 Pfam:PF00533
GO:GO:0006281 GO:GO:0060612 GO:GO:0006351 GO:GO:0006974
GO:GO:0010212 GO:GO:0006310 GO:GO:0035066 GO:GO:0001570
GO:GO:0031398 GO:GO:0016363 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0051568 GO:GO:0030330 eggNOG:NOG310206
GO:GO:0051571 GO:GO:0043542 GO:GO:0035097 GO:GO:0060261 KO:K14972
CTD:22976 HOGENOM:HOG000115463 HOVERGEN:HBG061191 OrthoDB:EOG4CRKZF
OMA:DIQQINR ChiTaRS:PAXIP1 GO:GO:0060717 GO:GO:0000416
GO:GO:0045830 EMBL:AF104261 EMBL:AK144606 EMBL:BC066014
IPI:IPI00421197 RefSeq:NP_061366.2 UniGene:Mm.277190
UniGene:Mm.409895 HSSP:Q14676 ProteinModelPortal:Q6NZQ4 SMR:Q6NZQ4
IntAct:Q6NZQ4 STRING:Q6NZQ4 PhosphoSite:Q6NZQ4 PaxDb:Q6NZQ4
PRIDE:Q6NZQ4 Ensembl:ENSMUST00000002291 GeneID:55982 KEGG:mmu:55982
UCSC:uc008wtr.1 GeneTree:ENSGT00600000084454 InParanoid:Q6NZQ4
NextBio:311686 Bgee:Q6NZQ4 Genevestigator:Q6NZQ4 Uniprot:Q6NZQ4
Length = 1056
Score = 126 (49.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSR 117
F GL C++ +S E R + GG +L+ +CTHL+V G K+E A+K R
Sbjct: 99 FFGLTACLSQVSSEDRSALWALVTFHGGSCQLNLNKKCTHLIVPEPKGEKYERAVK---R 155
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLY 143
+ IVT W +D V R E+ Y
Sbjct: 156 TSIKIVTPDWVLDCVSEKRRKDEAFY 181
Score = 43 (20.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 236 VGCGASYVVCEEDSVQKYMGHSNNL-VTPVWVLKTAKEKHVQR 277
V C V+ ++ S +K M H N ++ + ++ + H+ R
Sbjct: 982 VECAGGKVLAKQPSFRKLMEHKQNKSLSEIILISCENDLHLCR 1024
Score = 38 (18.4 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 296 IQNGIAREEINGGNVPEDAQSCKNKISQEKRQQTV 330
+Q I + I GG V E + C + I+ K +TV
Sbjct: 866 VQQYIKKLYILGGEVAECTKKCTHLIAS-KVTRTV 899
>UNIPROTKB|E1BWT7 [details] [associations]
symbol:ECT2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0000902 "cell morphogenesis" evidence=IEA]
[GO:0004871 "signal transducer activity" evidence=IEA] [GO:0005089
"Rho guanyl-nucleotide exchange factor activity" evidence=IEA]
[GO:0005096 "GTPase activator activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005923 "tight junction" evidence=IEA] [GO:0017048 "Rho GTPase
binding" evidence=IEA] [GO:0030496 "midbody" evidence=IEA]
[GO:0032147 "activation of protein kinase activity" evidence=IEA]
[GO:0032154 "cleavage furrow" evidence=IEA] [GO:0032863 "activation
of Rac GTPase activity" evidence=IEA] [GO:0033205 "cell cycle
cytokinesis" evidence=IEA] [GO:0042307 "positive regulation of
protein import into nucleus" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043089
"positive regulation of Cdc42 GTPase activity" evidence=IEA]
[GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB
cascade" evidence=IEA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA] [GO:0051260 "protein
homooligomerization" evidence=IEA] [GO:0051988 "regulation of
attachment of spindle microtubules to kinetochore" evidence=IEA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA]
[GO:0070830 "tight junction assembly" evidence=IEA] [GO:0071277
"cellular response to calcium ion" evidence=IEA] [GO:0071479
"cellular response to ionizing radiation" evidence=IEA] [GO:0071777
"positive regulation of cell cycle cytokinesis" evidence=IEA]
[GO:0097149 "centralspindlin complex" evidence=IEA]
InterPro:IPR000219 InterPro:IPR001331 InterPro:IPR026817
Pfam:PF00621 PROSITE:PS00741 PROSITE:PS50010 SMART:SM00325
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005634 GO:GO:0005737
GO:GO:0070301 GO:GO:0005096 GO:GO:0035556 GO:GO:0071277
GO:GO:0043123 GO:GO:0051260 GO:GO:0043065 GO:GO:0005923
GO:GO:0005089 Gene3D:1.20.900.10 SUPFAM:SSF48065 GO:GO:0004871
GO:GO:0000902 GO:GO:0045666 GO:GO:0032147 GO:GO:0030496
GO:GO:0033205 GO:GO:0032154 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0051988 GO:GO:0070830 GO:GO:0043089
GO:GO:0071479 GO:GO:0032863 GO:GO:0071777 GO:GO:0042307
GO:GO:0097149 PANTHER:PTHR16777:SF0 GeneTree:ENSGT00700000104481
OMA:FERRSHT EMBL:AADN02021008 EMBL:AADN02021007 IPI:IPI00579342
Ensembl:ENSGALT00000014916 Uniprot:E1BWT7
Length = 914
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 33/99 (33%), Positives = 48/99 (48%)
Query: 57 PFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRK--FEHALKH 114
PF ++ G S E + + E TE GG Y P +CTHLVV+ ++ FE K
Sbjct: 270 PFQDCLLSFLGFSDEEKANMEEMTEMQGGCYLPVGDERCTHLVVEESTVKEIPFEPLKK- 328
Query: 115 GSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGM 153
LYIV WF S++ + R ES+Y + + G+
Sbjct: 329 -----LYIVKQEWFWGSIQMDARAGESMYLFEKSESPGL 362
>RGD|1307547 [details] [associations]
symbol:Paxip1 "PAX interacting (with transcription-activation
domain) protein 1" species:10116 "Rattus norvegicus" [GO:0000416
"positive regulation of histone H3-K36 methylation" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0030330 "DNA damage response, signal transduction
by p53 class mediator" evidence=ISO] [GO:0031398 "positive
regulation of protein ubiquitination" evidence=ISO] [GO:0035066
"positive regulation of histone acetylation" evidence=ISO]
[GO:0035097 "histone methyltransferase complex" evidence=ISO]
[GO:0043542 "endothelial cell migration" evidence=ISO] [GO:0045830
"positive regulation of isotype switching" evidence=ISO]
[GO:0051568 "histone H3-K4 methylation" evidence=ISO] [GO:0051571
"positive regulation of histone H3-K4 methylation" evidence=ISO]
[GO:0060261 "positive regulation of transcription initiation from
RNA polymerase II promoter" evidence=ISO] [GO:0060612 "adipose
tissue development" evidence=ISO] [GO:0060717 "chorion development"
evidence=ISO] InterPro:IPR001357 Pfam:PF00533 RGD:1307547
GO:GO:0060612 GO:GO:0010212 GO:GO:0035066 GO:GO:0001570
GO:GO:0031398 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0051568 GO:GO:0030330 GO:GO:0051571 GO:GO:0043542
GO:GO:0035097 GO:GO:0060261 GO:GO:0060717 GO:GO:0000416
GO:GO:0045830 IPI:IPI00949383 Ensembl:ENSRNOT00000066753
ArrayExpress:F1LVY0 Uniprot:F1LVY0
Length = 994
Score = 124 (48.7 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSR 117
F GL C++ +S E R + GG +L+ +CTHL+V G K+E A+K R
Sbjct: 37 FFGLTACLSQVSSEDRSALWALVTFHGGSCQLNLNKKCTHLIVPEPKGEKYERAVK---R 93
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLY 143
+ IVT W +D V R E+ Y
Sbjct: 94 TSIKIVTPDWVLDCVSEKRRKDEASY 119
Score = 43 (20.2 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 236 VGCGASYVVCEEDSVQKYMGHSNNL-VTPVWVLKTAKEKHVQR 277
V C V+ ++ S +K M H N ++ + ++ + H+ R
Sbjct: 920 VECAGGKVLAKQPSFRKLMEHKQNKSLSEIILISCENDLHLCR 962
Score = 41 (19.5 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 296 IQNGIAREEINGGNVPEDAQSCKNKISQEKRQQTV 330
+Q I + I GG V E + C + I+ K +TV
Sbjct: 804 VQQYIKKLYILGGEVAESTKKCTHLIAS-KVTRTV 837
>ZFIN|ZDB-GENE-040831-2 [details] [associations]
symbol:ect2 "epithelial cell transforming sequence 2
oncogene" species:7955 "Danio rerio" [GO:0045666 "positive
regulation of neuron differentiation" evidence=IEA] [GO:0005089
"Rho guanyl-nucleotide exchange factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000910 "cytokinesis"
evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange factor
activity" evidence=IEA] [GO:0005096 "GTPase activator activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0035023
"regulation of Rho protein signal transduction" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] InterPro:IPR000219 InterPro:IPR001331
InterPro:IPR026817 Pfam:PF00621 PROSITE:PS00741 PROSITE:PS50010
SMART:SM00325 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-040831-2 GO:GO:0005634 GO:GO:0005737 GO:GO:0005096
GO:GO:0043547 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0035556
GO:GO:0000910 GO:GO:0005089 Gene3D:1.20.900.10 SUPFAM:SSF48065
GO:GO:0000902 GO:GO:0045666 eggNOG:COG5422 GO:GO:0035023
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 HOGENOM:HOG000012876
HOVERGEN:HBG005563 OrthoDB:EOG4GHZNG PANTHER:PTHR16777:SF0
EMBL:BC096846 IPI:IPI00615470 UniGene:Dr.82499
ProteinModelPortal:Q4V9L0 SMR:Q4V9L0 STRING:Q4V9L0
InParanoid:Q4V9L0 ArrayExpress:Q4V9L0 Uniprot:Q4V9L0
Length = 976
Score = 119 (46.9 bits), Expect = 0.00085, P = 0.00085
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 57 PFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGS 116
PF V+ G S+E + + E T++ GG++ +CTHLVV+ ++ L
Sbjct: 273 PFQDCVLSFLGFSEEEKNNMEERTQKHGGRFQAVGDERCTHLVVEENSIKE----LPFTP 328
Query: 117 RNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGM 153
LY+V WF S++ + R ES+Y+ + + M
Sbjct: 329 SKRLYVVKQEWFWGSIQMDARAGESMYSYEKPESPAM 365
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 378 355 0.00080 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 601 (64 KB)
Total size of DFA: 223 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.08u 0.10s 28.18t Elapsed: 00:00:01
Total cpu time: 28.08u 0.10s 28.18t Elapsed: 00:00:01
Start: Fri May 10 09:23:35 2013 End: Fri May 10 09:23:36 2013