BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017048
(378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZQF0|TOPB1_MOUSE DNA topoisomerase 2-binding protein 1 OS=Mus musculus GN=Topbp1
PE=1 SV=2
Length = 1515
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH-PQCTHLVVQSFGGRKFEHALKHGS 116
F G +ICVTGL+ RK V + T + GGQY L +CTHL+VQ G+K+E A
Sbjct: 200 FLGCIICVTGLNGIHRKTVQQLTAKHGGQYMGQLKMNECTHLIVQEPKGQKYECA----R 255
Query: 117 RNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLD 156
R ++ VTL WF DS+ + ES+Y ++ E M D
Sbjct: 256 RWNVHCVTLQWFHDSIEKGFCQDESIYKAETRVEAKMVPD 295
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 57 PFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFE--HALKH 114
P +V+CV+ + + ++ LG +Y TH + Q GR + K
Sbjct: 906 PLDSVVVCVSKKLSKKQSELNGVAASLGAEYRWSFDETVTHFIYQ---GRANDSNREYKS 962
Query: 115 GSRNGLYIVTLGWFVDSVRRNVRLSESLY 143
G++IV+ W ++ + L ESLY
Sbjct: 963 AKERGVHIVSEHWLLECAQEYKHLPESLY 991
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKF 108
N S + + T L K+ R++V + + +GG+ DL+ THL+ G +K+
Sbjct: 103 NMIMSDVTVSCTSLDKDKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKY 156
>sp|Q92547|TOPB1_HUMAN DNA topoisomerase 2-binding protein 1 OS=Homo sapiens GN=TOPBP1
PE=1 SV=3
Length = 1522
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH-PQCTHLVVQSFGGRKFEHALKHGS 116
F G +ICVTGL RK+V + T + GGQY L +CTHL+VQ G+K+E A
Sbjct: 200 FLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECA----K 255
Query: 117 RNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDE 150
R ++ VT WF DS+ + ES+Y + E
Sbjct: 256 RWNVHCVTTQWFFDSIEKGFCQDESIYKTEPRPE 289
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKF 108
N S + I T L KE R++V + + +GG+ DL+ THL+ G +K+
Sbjct: 103 NMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKY 156
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALK 113
A P +V+CV+ + + ++ LG Y TH + Q GR + +
Sbjct: 901 APKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRWSFDETVTHFIYQ---GRPNDTNRE 957
Query: 114 HGS--RNGLYIVTLGWFVDSVRRNVRLSESLY 143
+ S G++IV+ W +D + L ESLY
Sbjct: 958 YKSVKERGVHIVSEHWLLDCAQECKHLPESLY 989
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 96 THLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKS 147
THL+++ GG K+E A K L VT+ W +++ R R ES + +++
Sbjct: 693 THLILKERGGSKYEAAKKW----NLPAVTIAWLLETARTGKRADESHFLIEN 740
>sp|Q800K6|TOB1A_XENLA DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis
GN=topbp1-A PE=1 SV=2
Length = 1513
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 32/245 (13%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH-PQCTHLVVQSFGGRKFEHALKHGS 116
F G ICVTGLS RK+V T GG+Y+ L + THL+VQ G+K+E A K
Sbjct: 199 FRGCTICVTGLSSLDRKEVQRLTALHGGEYTGQLKMNESTHLIVQEAKGQKYECARKW-- 256
Query: 117 RNGLYIVTLGWFVDSVRRNVRLSESLY------TVKSIDEHGMHL---DKLNRLVGFAGT 167
++ +++ WF DS+ + E++Y T+KS+ + K N + +
Sbjct: 257 --NVHCISVQWFFDSIEKGFCQDETMYKIEPASTIKSVPDTSTPTGGNSKPNSRTLYDVS 314
Query: 168 ENSCLPAGIYEAKQFNATGKHERD------------SNRSMNSTLSGCSMYVDSDVSEEL 215
+ S + FN+ D S ++ + L GC +Y+ +L
Sbjct: 315 QISNISTSCVNESAFNSAMASRLDPPADTLENLDISSLQAPDDLLDGCRIYLCGFGGRKL 374
Query: 216 RNKVFEAATNEGATLVNQWFVGCGASYVVCEED-SVQKYMG---HSNNLVTPVWVLKTAK 271
+K+ + N G NQ G +V E D +++++ H ++T W+L +
Sbjct: 375 -DKLRKLINNGGGVRFNQ-LTGDVTHIIVGETDEELKQFLNKTQHRPYVLTVKWLLDSFA 432
Query: 272 EKHVQ 276
+ H+Q
Sbjct: 433 KGHLQ 437
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 20/139 (14%)
Query: 61 LVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGS---R 117
+VICV+ + + ++ LG +Y TH + + GR+ + + ++ S R
Sbjct: 900 VVICVSKKLIKKQGELNGIAASLGAEYRWCFDESVTHFI---YHGRQNDMSREYKSVKER 956
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIY 177
+G+YIV+ W + R+ E+LY M LD S + G Y
Sbjct: 957 SGIYIVSEHWLFACSEQQKRVPEALYP--HTYNPKMSLDI------------SAVQDGSY 1002
Query: 178 EAKQFNATGKHERDSNRSM 196
A +F+A ++D N +
Sbjct: 1003 TASKFSADTSLQQDENSEL 1021
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKF 108
N + + I T L KE R+ V + +GG DL+ THL+ G +K+
Sbjct: 103 NMAMADVTISCTSLDKETREDVHHYVQIMGGCVYRDLNVSVTHLIAGEVGSKKY 156
>sp|Q7ZZY3|TOB1B_XENLA DNA topoisomerase 2-binding protein 1-B OS=Xenopus laevis
GN=topbp1-B PE=2 SV=1
Length = 1513
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 32/245 (13%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH-PQCTHLVVQSFGGRKFEHALKHGS 116
F G ICVTGLS RK+V T GG+Y+ L + THL+VQ G+K+E A K
Sbjct: 199 FRGCTICVTGLSSLDRKEVQRLTALHGGEYTGQLKMNESTHLIVQEAKGQKYECARKW-- 256
Query: 117 RNGLYIVTLGWFVDSVRRNVRLSESLY------TVKSIDEHGMHL---DKLNRLVGFAGT 167
++ +++ WF DS+ + E++Y T+KS+ + K N + +
Sbjct: 257 --IVHCISVQWFFDSIEKGFCQDETMYKIEPASTIKSVPDTSTPTGGNSKPNSRTLYDVS 314
Query: 168 ENSCLPAGIYEAKQFNATGKHERD------------SNRSMNSTLSGCSMYVDSDVSEEL 215
+ S + FN+ D S ++ + L GC +Y+ +L
Sbjct: 315 QISNISTSCVNESAFNSAMASRLDPPADTLENLDISSLQAPDDLLDGCRIYLCGFGGRKL 374
Query: 216 RNKVFEAATNEGATLVNQWFVGCGASYVVCEED-SVQKYMG---HSNNLVTPVWVLKTAK 271
+K+ + N G NQ G +V E D +++++ H ++T W+L +
Sbjct: 375 -DKLRKLINNGGGVRFNQ-LTGDVTHIIVGETDEELKQFLNKTQHRPYVLTVKWLLDSFA 432
Query: 272 EKHVQ 276
+ H+Q
Sbjct: 433 KGHLQ 437
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 20/139 (14%)
Query: 61 LVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGS---R 117
+VICV+ + + ++ LG +Y TH + + GR+ + + ++ S R
Sbjct: 900 VVICVSKKLIKKQGELNGIAASLGAEYRWCFDESVTHFI---YHGRQNDMSREYKSVKER 956
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIY 177
+G+YIV+ W + R+ E+LY M LD S + G Y
Sbjct: 957 SGIYIVSEHWLFACSEQQKRVPEALYP--HTYNPKMSLDI------------SAVKMGSY 1002
Query: 178 EAKQFNATGKHERDSNRSM 196
A +F+A ++D N +
Sbjct: 1003 TASKFSADTSLQQDENSEL 1021
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKF 108
N + + I T L KE R+ V + +GG DL+ THL+ G K+
Sbjct: 103 NMAMADVTISCTSLDKETREDVHHYVQIMGGCVYRDLNVSVTHLIAGEVGSNKY 156
>sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevis GN=paxip1 PE=1 SV=1
Length = 1256
Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSR 117
F G+ C++ +S + R + T GG L+ +CTHL+V G K+E+A + GS
Sbjct: 99 FFGVTACLSQVSPDDRNSLWALTTFYGGDCQLSLNKKCTHLIVPEPKGNKYEYAFQRGS- 157
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLY 143
+ IVT W +DSV + E+LY
Sbjct: 158 --IKIVTPDWVLDSVSEKTKKDEALY 181
>sp|Q6NZQ4|PAXI1_MOUSE PAX-interacting protein 1 OS=Mus musculus GN=Paxip1 PE=1 SV=1
Length = 1056
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSR 117
F GL C++ +S E R + GG +L+ +CTHL+V G K+E A+K R
Sbjct: 99 FFGLTACLSQVSSEDRSALWALVTFHGGSCQLNLNKKCTHLIVPEPKGEKYERAVK---R 155
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLYTVKSI 148
+ IVT W +D V R E+ Y + I
Sbjct: 156 TSIKIVTPDWVLDCVSEKRRKDEAFYHPRLI 186
>sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=2
Length = 1069
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSR 117
F G+ C++ +S E R + GG L+ +CTHL+V G K+E ALK R
Sbjct: 99 FFGITACLSQVSSEDRSALWALVTFYGGDCQLTLNKKCTHLIVPEPKGEKYECALK---R 155
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLY 143
+ IVT W +D V + E+ Y
Sbjct: 156 ASIKIVTPDWVLDCVSEKTKKDEAFY 181
>sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1 OS=Bos taurus GN=PAXIP1 PE=2 SV=1
Length = 984
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSR 117
F G+ C++ +S E R + GG +L+ +CTHLVV G K+E AL+ R
Sbjct: 99 FFGITACLSQVSPEDRSALWAMLTFHGGGCQLNLNRKCTHLVVPEPKGEKYECALR---R 155
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLYTVKSI 148
+ IVT W +D + R E+LY + I
Sbjct: 156 ASIKIVTPDWVLDCISEKTRKDEALYHPRLI 186
>sp|Q9H8V3|ECT2_HUMAN Protein ECT2 OS=Homo sapiens GN=ECT2 PE=1 SV=4
Length = 914
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQS--FGGRKFEHALK 113
PF ++ G S E + + E TE GG+Y P +CTHLVV+ FE + K
Sbjct: 269 PPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKK 328
Query: 114 HGSRNGLYIVTLGWFVDSVRRNVRLSESLY 143
LY+V WF S++ + R E++Y
Sbjct: 329 ------LYVVKQEWFWGSIQMDARAGETMY 352
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 60 GLVICVTGL-SKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGS 116
LV+C TG KE +++ +GG D + + THLV G KF A+ G+
Sbjct: 178 NLVLCFTGFRKKEELVRLVTLVHHMGGVIRKDFNSKVTHLVANCTQGEKFRVAVSLGT 235
>sp|Q07139|ECT2_MOUSE Protein ECT2 OS=Mus musculus GN=Ect2 PE=1 SV=2
Length = 913
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQ--SFGGRKFEHALK 113
PF ++ G S E + + E TE GG Y P +CTHL+V+ + FE + K
Sbjct: 269 PPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKK 328
Query: 114 HGSRNGLYIVTLGWFVDSVRRNVRLSESLY 143
L++V WF S++ + R E++Y
Sbjct: 329 ------LFVVKQEWFWGSIQMDARAGETMY 352
>sp|P32372|RAD4_SCHPO S-M checkpoint control protein rad4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rad4 PE=1 SV=2
Length = 648
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 63 ICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYI 122
+C+T + + R ++ + GG + PDL THL+ + GRK+E+ALK + +
Sbjct: 107 VCLTNIGQPERSRIENYVLKHGGTFCPDLTRDVTHLIAGTSSGRKYEYALKW----KINV 162
Query: 123 VTLGWFVDSVRRNVRLSESLY 143
V + W S++RN L +
Sbjct: 163 VCVEWLWQSIQRNAVLEPQYF 183
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALK 113
++ P G VIC T + + R ++ +LG Y D THL+ F K++ A K
Sbjct: 3 SSKPLKGFVICCTSIDLKQRTEISTKATKLGAAYRSDFTKDVTHLIAGDFDTPKYKFAAK 62
Query: 114 HGSRNGLYIVTLGW 127
SR + I++ W
Sbjct: 63 --SRPDIKIMSSEW 74
>sp|Q5XIY8|PAXI1_DANRE PAX-interacting protein 1 OS=Danio rerio GN=paxip1 PE=2 SV=1
Length = 943
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSR 117
F G+ C+ L+ E + GG + +CTHLVV G K+E AL+H
Sbjct: 99 FFGVTACLPHLA-EDLNALWAFITFYGGDCQLHFNKKCTHLVVPEPKGAKYECALRH--- 154
Query: 118 NGLYIVTLGWFVDSVRRNVRLSESLY 143
N + IVT W +DSV+ R E LY
Sbjct: 155 NNIKIVTPEWILDSVKEKNRKDEMLY 180
>sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana
GN=At4g02110 PE=1 SV=3
Length = 1329
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 60 GLVICVTGLSKEARKQVMEATERLGGQYS-PDLHPQCTHLVVQSFGGRKFEHALKHGSRN 118
LV+C+TG R+ +M E +GGQ+S P + + THL+ F G K+E A K R
Sbjct: 111 ALVVCLTGYQGHDREDIMRMVELMGGQFSKPLVANRVTHLICYKFEGEKYELA-KRIKR- 168
Query: 119 GLYIVTLGWFVDSVRRNVRLSESLYTV 145
+ +V W D ++ L E Y +
Sbjct: 169 -IKLVNHRWLEDCLKNWKLLPEVDYEI 194
>sp|A9BJX5|DNLJ_PETMO DNA ligase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ligA
PE=3 SV=1
Length = 668
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 56 APFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKH 114
P GLVIC TG LSK R++ E E GG +S ++ + LVV G K + A +
Sbjct: 592 GPLKGLVICQTGALSKMTRQEFAEYVESKGGTFSENVTKKTNILVVGENPGSKLDKAQSY 651
Query: 115 G 115
G
Sbjct: 652 G 652
>sp|Q60596|XRCC1_MOUSE DNA repair protein XRCC1 OS=Mus musculus GN=Xrcc1 PE=1 SV=2
Length = 631
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 60 GLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNG 119
G+V+ ++G R ++ + LG +Y PD P THL+ K+ L G R
Sbjct: 322 GVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGR-- 379
Query: 120 LYIVTLGWFVDSVRRNVRLSESLY 143
IV W +D RL Y
Sbjct: 380 --IVRKEWVLDCHHMRRRLPSRRY 401
>sp|O54935|XRCC1_CRIGR DNA repair protein XRCC1 OS=Cricetulus griseus GN=XRCC1 PE=2 SV=1
Length = 633
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 60 GLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNG 119
G+V+ ++G R ++ + LG +Y PD P THL+ K+ L G R
Sbjct: 323 GVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGR-- 380
Query: 120 LYIVTLGWFVD 130
IV W +D
Sbjct: 381 --IVRKEWVLD 389
>sp|Q9ESZ0|XRCC1_RAT DNA repair protein XRCC1 OS=Rattus norvegicus GN=Xrcc1 PE=2 SV=2
Length = 631
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 60 GLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNG 119
G+V+ ++G R ++ + LG +Y PD P THL+ K+ L G R
Sbjct: 322 GVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQVLGLGGR-- 379
Query: 120 LYIVTLGWFVD 130
IV W +D
Sbjct: 380 --IVRKEWVLD 388
>sp|C0Z4D6|DNLJ_BREBN DNA ligase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC
100599) GN=ligA PE=3 SV=1
Length = 671
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 54 ANAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHAL 112
A+ PFSG I +TG L++ +R++ EA RLGG+ + + + ++ G K E A
Sbjct: 592 ADLPFSGKTIVLTGTLTQMSRQEAEEAIARLGGKVTGSVSKKTDLVIAGEKAGSKLEKAE 651
Query: 113 KHG 115
K G
Sbjct: 652 KLG 654
>sp|Q6G2R5|DNLJ_BARHE DNA ligase OS=Bartonella henselae (strain ATCC 49882 / Houston 1)
GN=ligA PE=3 SV=1
Length = 716
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 44 SSLASDSVLPANAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQS 102
+ L +SV+ A++P +G +I TG L++ +R + ERLG + S L + LV
Sbjct: 629 TPLDEESVMTASSPIAGKIIVFTGTLTRMSRDEAKALAERLGAKTSGSLSKKTNLLVAGV 688
Query: 103 FGGRKFEHALKHG 115
GG K A + G
Sbjct: 689 GGGSKLTKAQELG 701
>sp|B2UTL2|DNLJ_HELPS DNA ligase OS=Helicobacter pylori (strain Shi470) GN=ligA PE=3 SV=1
Length = 656
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 36 FESMSPASSSLASDSVLPANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQC 95
F+ ++P +S +A + +++ FS I +TG + R++ + E LG + S + +
Sbjct: 561 FDLLNPKNSDMAEEKQ-ESSSVFSNKTIVLTGTLSKPRQEYAQMLENLGAKISSSVSAKT 619
Query: 96 THLVVQSFGGRKFEHALKHG 115
L+V G K A KHG
Sbjct: 620 DFLIVGENAGSKLALAKKHG 639
>sp|Q1CTQ9|DNLJ_HELPH DNA ligase OS=Helicobacter pylori (strain HPAG1) GN=ligA PE=3 SV=1
Length = 656
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 36 FESMSPASSSLASDSVLPANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQC 95
FE ++P +S +A + +++ F+ I +TG + R++ + E LG + S + +
Sbjct: 561 FELLNPRNSDMAEEKQ-KSSSVFNNKTIVLTGTLSKPRQEYAQMLENLGAKISSSVSAKT 619
Query: 96 THLVVQSFGGRKFEHALKHG 115
L+V G K A KHG
Sbjct: 620 NFLIVGENAGSKLALAQKHG 639
>sp|B5Z6Y6|DNLJ_HELPG DNA ligase OS=Helicobacter pylori (strain G27) GN=ligA PE=3 SV=1
Length = 658
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 36 FESMSPASSSLASDSVLPANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQC 95
FE ++P +S +A + +++ F+ I +TG + R++ + E LG + + + +
Sbjct: 561 FELLNPKNSDMAEEKQ-ESSSVFNNKTIVLTGTLSKPRQEYAQMLENLGAKITSSVSAKT 619
Query: 96 THLVVQSFGGRKFEHALKHG 115
L+V G K A KHG
Sbjct: 620 DFLIVGENAGSKLALAKKHG 639
>sp|Q67KI8|DNLJ_SYMTH DNA ligase OS=Symbiobacterium thermophilum (strain T / IAM 14863)
GN=ligA PE=3 SV=1
Length = 673
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 53 PANAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHA 111
PA P +G+ + VTG L + +RK++ E ++LGG+ + + + + +V G K + A
Sbjct: 594 PAEGPLAGMTVVVTGTLVRWSRKEIEELIQQLGGKAAGSVSRKTSFVVAGEAAGSKLQKA 653
Query: 112 LKHG 115
+ G
Sbjct: 654 QELG 657
>sp|P38850|RT107_YEAST Regulator of Ty1 transposition protein 107 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RTT107 PE=1
SV=1
Length = 1070
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 61 LVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHG--SRN 118
L + T R + E LGG +P+L + THL+ +S G+KF+ A K +N
Sbjct: 380 LTVAYTNYFGSQRFYIQRLVEILGGLSTPELTRKNTHLITKSTIGKKFKVAKKWSLDPQN 439
Query: 119 GLYIVTLGWFVDSVRRNVRLS--ESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPA 174
+ + W N +L+ +S + +D D + +G G ++S LP
Sbjct: 440 AIIVTNHMWLEQCYMNNSKLNPKDSRFQNFKLD------DNMGWNIGQIGMDHSSLPT 491
>sp|Q9UKK3|PARP4_HUMAN Poly [ADP-ribose] polymerase 4 OS=Homo sapiens GN=PARP4 PE=1 SV=3
Length = 1724
Score = 35.4 bits (80), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 58 FSGLVIC--VTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHG 115
F+ + C V L ++ +K++ + GG++S L+PQCTH+++ + ++ L
Sbjct: 6 FANCIFCLKVKYLPQQQKKKLQTDIKENGGKFSFSLNPQCTHIILDN-ADVLSQYQLNSI 64
Query: 116 SRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEH 151
+N ++I + S+R + L VK+ D +
Sbjct: 65 QKNHVHIANPDFIWKSIRE-----KRLLDVKNYDPY 95
>sp|Q8CXK6|DNLJ_OCEIH DNA ligase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM
11309 / KCTC 3954 / HTE831) GN=ligA PE=3 SV=1
Length = 667
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 25 SLRRLRGGVQSFESMSPASSSLASDSVLPANAPFSGLVICVTG-LSKEARKQVMEATERL 83
+LR L GVQ E P S A+DSVL SG + +TG + K +RK+ E E L
Sbjct: 570 NLREL--GVQ-MEYKGPRKSEQATDSVL------SGKTVVLTGKMEKFSRKEAKEIIESL 620
Query: 84 GGQYSPDLHPQCTHLVVQSFGGRKFEHALKHG 115
GG + + + ++ G K + A K G
Sbjct: 621 GGTVTGSVSKKTDIVIAGEDAGSKLDKAEKLG 652
>sp|P18887|XRCC1_HUMAN DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 PE=1 SV=2
Length = 633
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 60 GLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNG 119
G+V+ ++G R ++ + LG +Y PD THL+ K+ L G R
Sbjct: 322 GVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGR-- 379
Query: 120 LYIVTLGWFVD 130
IV W +D
Sbjct: 380 --IVRKEWVLD 388
>sp|B2S3M4|DNLJ_TREPS DNA ligase OS=Treponema pallidum subsp. pallidum (strain SS14)
GN=ligA PE=3 SV=1
Length = 823
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 39 MSPASSSLASDSVLPANAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTH 97
++ A S L +D+ + +AP G+ C +G L R Q + +RLGG + Q T+
Sbjct: 729 IATAQSPLHTDAHV--HAPLHGMSFCFSGDLDGMTRAQAIALVQRLGGTVKTAVSTQLTY 786
Query: 98 LVVQSFGG--RKFEHALKHGSR 117
LV G RK ++A++ G R
Sbjct: 787 LVSNDPHGQSRKCQNAVRCGVR 808
>sp|O83642|DNLJ_TREPA DNA ligase OS=Treponema pallidum (strain Nichols) GN=ligA PE=3 SV=1
Length = 823
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 39 MSPASSSLASDSVLPANAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTH 97
++ A S L +D+ + +AP G+ C +G L R Q + +RLGG + Q T+
Sbjct: 729 IATAQSPLHTDAHV--HAPLHGMSFCFSGDLDGMTRAQAIALVQRLGGTVKTAVSTQLTY 786
Query: 98 LVVQSFGG--RKFEHALKHGSR 117
LV G RK ++A++ G R
Sbjct: 787 LVSNDPHGQSRKCQNAVRCGVR 808
>sp|B6JLJ9|DNLJ_HELP2 DNA ligase OS=Helicobacter pylori (strain P12) GN=ligA PE=3 SV=1
Length = 656
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 36 FESMSPASSSLASDSVLPANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQC 95
F+ ++P +S +A + +++ F+ I +TG + R++ + E LG + S + +
Sbjct: 561 FDLLNPKNSDMAKEKQ-KSSSVFNNKTIVLTGTLSKPRQEYAQMLENLGAKISSSVSAKT 619
Query: 96 THLVVQSFGGRKFEHALKHG 115
L+V G K A KHG
Sbjct: 620 DFLIVGENPGSKLALAKKHG 639
>sp|B7IDX6|DNLJ_THEAB DNA ligase OS=Thermosipho africanus (strain TCF52B) GN=ligA PE=3
SV=1
Length = 665
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 58 FSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGS 116
+GL +TG + R++V E E+LGG+ + + + +L+V G K++ AL+ G
Sbjct: 592 LAGLTFVITGKFNSFTREEVKEIIEKLGGKVTNTVSSKTDYLLVGEKPGSKYQKALELGV 651
Query: 117 R 117
+
Sbjct: 652 K 652
>sp|A5CZ68|DNLJ_PELTS DNA ligase OS=Pelotomaculum thermopropionicum (strain DSM 13744 /
JCM 10971 / SI) GN=ligA PE=3 SV=1
Length = 679
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 44 SSLASDSVLPANAPFSGLVICVTGLSKE-ARKQVMEATERLGGQYSPDLHPQCTHLVVQS 102
++L + P +G V +TG+ K+ +R+Q E E LGG+ S + +V
Sbjct: 591 NTLTEKVIREGGGPLNGKVFVLTGVLKDFSRQQAQELIESLGGRISSSVSRNTDFVVAGE 650
Query: 103 FGGRKFEHALKHGSR 117
G K+E AL G +
Sbjct: 651 NPGSKYEKALTLGVK 665
>sp|Q17XL1|DNLJ_HELAH DNA ligase OS=Helicobacter acinonychis (strain Sheeba) GN=ligA PE=3
SV=1
Length = 654
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 33 VQS-FESMSPASSSLASDSVLPANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDL 91
+QS F+ ++P +S + + +++ FS I +TG + R++ + E LG + S +
Sbjct: 557 IQSLFDLLNPKNSDIIEEKQ-ESSSIFSHKTIVLTGTLSKPRQEYAQILENLGAKISSSV 615
Query: 92 HPQCTHLVVQSFGGRKFEHALKHG 115
+ L+V G K A KHG
Sbjct: 616 SAKTDFLIVGENAGSKLSLAQKHG 639
>sp|P47027|DPB11_YEAST DNA replication regulator DPB11 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DPB11 PE=1 SV=1
Length = 764
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 57 PFSGLVICVTGLSKEA-RKQVMEATERLGGQYSPDLHPQCTHLVV-QSFGGRKFEHALKH 114
PF G+ C T ++ E K++ + +LGG +S DL Q LVV + KF+ A+KH
Sbjct: 3 PFQGITFCPTAINNEILAKKISKKIIKLGGIFSKDLTRQVNVLVVGSTTNTNKFKFAVKH 62
>sp|Q3ZX08|DNLJ_DEHSC DNA ligase OS=Dehalococcoides sp. (strain CBDB1) GN=ligA PE=3 SV=1
Length = 677
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 55 NAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALK 113
N PFSG+ VTG L +R++ E LGG ++ ++LVV + G K A
Sbjct: 600 NMPFSGMEFVVTGKLESFSREEAQEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARS 659
Query: 114 HGSR 117
G +
Sbjct: 660 MGVK 663
>sp|Q99728|BARD1_HUMAN BRCA1-associated RING domain protein 1 OS=Homo sapiens GN=BARD1
PE=1 SV=2
Length = 777
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 66/183 (36%), Gaps = 21/183 (11%)
Query: 61 LVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKH--GSRN 118
LV+ +GLS E +K + E L + + TH+VV G + LK G N
Sbjct: 570 LVLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVP---GDAVQSTLKCMLGILN 626
Query: 119 GLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYE 178
G +I+ W +RR V E Y + G +LNR + C Y
Sbjct: 627 GCWILKFEWVKACLRRKVCEQEEKYEI----PEGPRRSRLNREQLLPKLFDGCY---FY- 678
Query: 179 AKQFNATGKHERDSNRSMNSTLSGCSMY-----VDSDVSEELRNKVFEAATNEGATLVNQ 233
T KH N T G + DSDV++ + + A + Q
Sbjct: 679 ---LWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQ 735
Query: 234 WFV 236
+ +
Sbjct: 736 YII 738
>sp|B5YIF8|DNLJ_THEYD DNA ligase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=ligA PE=3 SV=1
Length = 670
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHA 111
+P GL +TG + R++V E E+ GG+ S + +L+V G K A
Sbjct: 597 SPLKGLTFVITGTLPKPREEVKEMIEKAGGKVSSSVSKNTDYLLVGEDPGSKLAKA 652
>sp|A5FRL4|DNLJ_DEHSB DNA ligase OS=Dehalococcoides sp. (strain BAV1) GN=ligA PE=3 SV=1
Length = 680
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 55 NAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALK 113
N PFSG+ VTG L +R++ E LGG ++ +LVV + G K A
Sbjct: 603 NMPFSGMEFVVTGKLESFSREEAQEKIRSLGGTAKDNVTKATNYLVVGADAGSKLTKARS 662
Query: 114 HGSR 117
G +
Sbjct: 663 MGVK 666
>sp|A5GFW1|AURKA_PIG Aurora kinase A OS=Sus scrofa GN=AURKA PE=2 SV=1
Length = 402
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 240 ASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQRLVHISADLARQVGMMLENIQNG 299
A V+C +S Q+ H+ LV+ ++ K+K Q + R V L N Q
Sbjct: 44 AQRVLCPSNSSQRLPSHTQKLVSSHKPVQNLKQKQSQ-----ATSGPRPVSRPLSNTQQS 98
Query: 300 IAREEINGGNVPEDAQSCKNKISQEKRQQ 328
+ GN PE + K K + K++Q
Sbjct: 99 EQPQPAAPGNNPEKEAASKQKNEESKKRQ 127
>sp|B8ICE5|DNLJ_METNO DNA ligase OS=Methylobacterium nodulans (strain ORS2060 / LMG
21967) GN=ligA PE=3 SV=1
Length = 829
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 54 ANAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHAL 112
A A FSG + TG L + R + ERLG + S + + +V G K + A
Sbjct: 751 AAAVFSGQTVVFTGSLERMTRSEAKATAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAE 810
Query: 113 KHGSR 117
KHG R
Sbjct: 811 KHGVR 815
>sp|A4YZJ3|DNLJ_BRASO DNA ligase OS=Bradyrhizobium sp. (strain ORS278) GN=ligA PE=3 SV=1
Length = 716
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 55 NAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALK 113
N+P + + TG L K R + ERLG + S + + ++V G K + A K
Sbjct: 640 NSPIATKTVVFTGTLEKMTRDEAKATAERLGAKVSGSVSKKTDYVVAGPGAGSKLKDAEK 699
Query: 114 HGSR 117
HG +
Sbjct: 700 HGVK 703
>sp|Q9DE07|NBN_CHICK Nibrin OS=Gallus gallus GN=NBN PE=1 SV=1
Length = 753
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSR 117
+ LV+C + L + + EA ++LGG + +CTHL+++S K
Sbjct: 107 YESLVVCSSCLDVAQKTALNEAIQQLGGLVVNEWTKECTHLIMESV---KVTVKTICALI 163
Query: 118 NGLYIVTLGWFVD-----SVRRNVRLSESLYTVKSIDEHGMHLDKLN 159
G IV +F + R+ + ES Y S+DE + +D ++
Sbjct: 164 CGRPIVKPEFFSELMKAVQSRQQLPTPESFY--PSVDEPAIGIDNMD 208
>sp|B1M575|DNLJ_METRJ DNA ligase OS=Methylobacterium radiotolerans (strain ATCC 27329 /
DSM 1819 / JCM 2831) GN=ligA PE=3 SV=1
Length = 810
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 54 ANAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHAL 112
A + F+G + TG L K R + ERLG + S + + +V G K + A
Sbjct: 732 AASTFAGKTVVFTGALEKMTRNEAKAVAERLGAKVSGSVSAKTDLVVAGPGAGSKLKDAQ 791
Query: 113 KHGSR 117
KHG R
Sbjct: 792 KHGVR 796
>sp|O87703|DNLJ_GEOSE DNA ligase OS=Geobacillus stearothermophilus GN=ligA PE=1 SV=1
Length = 670
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 53 PANAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHA 111
PA++ F+G + +TG L+ +R + E ERLGG+ + + ++ G K E A
Sbjct: 589 PADSAFAGKTVVLTGKLASMSRNEAKEQIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKA 648
Query: 112 LKHG 115
+ G
Sbjct: 649 QQLG 652
>sp|Q5L3B9|DNLJ_GEOKA DNA ligase OS=Geobacillus kaustophilus (strain HTA426) GN=ligA PE=3
SV=1
Length = 670
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 53 PANAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHA 111
PA++ F+G + +TG L+ +R + E ERLGG+ + + ++ G K E A
Sbjct: 589 PADSAFAGKTVVLTGKLASMSRNEAKEEIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKA 648
Query: 112 LKHG 115
+ G
Sbjct: 649 QQLG 652
>sp|B0UQ51|DNLJ_METS4 DNA ligase OS=Methylobacterium sp. (strain 4-46) GN=ligA PE=3 SV=1
Length = 827
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 58 FSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGS 116
FSG + TG L + R + ERLG + S + + +V G K + A KHG
Sbjct: 753 FSGRTVVFTGSLERMTRSEAKATAERLGAKVSGSVSAKTDLVVAGPGAGTKLKDAEKHGV 812
Query: 117 R 117
R
Sbjct: 813 R 813
>sp|Q04HB6|FENR_OENOB Ferredoxin--NADP reductase OS=Oenococcus oeni (strain ATCC BAA-331
/ PSU-1) GN=OEOE_0163 PE=3 SV=1
Length = 346
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 70 KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF---GGRKFEHALKHGSRNGLYIVTLG 126
+E + ++EAT R+GGQ + L+P+ T L V F GR + LK + +V
Sbjct: 27 RELKTALIEATPRIGGQITA-LYPEKTILDVAGFLGISGRDLVNELKLQTD----LVDSK 81
Query: 127 WFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATG 186
F++S N++ S + ++ I+ H L K ++ +G G + ++ + G
Sbjct: 82 TFLNSEVTNLKKIASHFEIE-INHHASFLAK--SVIIASGN-------GSFSPRKIDVPG 131
Query: 187 KHERDSNRSMNSTLSGCSMYVDSDVS 212
E + + + L G S D D +
Sbjct: 132 SSEAEQSGMLTYLLPGLSEVADKDFA 157
>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis
thaliana GN=CPL3 PE=1 SV=2
Length = 1241
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 63 ICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYI 122
I G +K + + E+ G + + TH+V S G K AL G ++
Sbjct: 1161 IIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSLGTDKVNWALTRGR----FV 1216
Query: 123 VTLGWFVDSVRRNVRLSESLYTV 145
V GW S R +E+LY +
Sbjct: 1217 VHPGWVEASAFLYQRANENLYAI 1239
>sp|Q9FK91|PARP3_ARATH Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thaliana GN=PARP3
PE=2 SV=2
Length = 814
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALK 113
A+ PF G++I + G + + ER GG+ S + +V + R +
Sbjct: 183 ADKPFVGMMISLMGRLTRTHQYWKKKIERNGGKVSNTVQGVTCLVVSPAERERGGTSKMV 242
Query: 114 HGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVK---SIDEHGMHLDK 157
GL +V+ W +DSV ++ Y V S++ G+ DK
Sbjct: 243 EAMEQGLPVVSEAWLIDSVEKHEAQPLEAYDVVSDLSVEGKGIPWDK 289
>sp|Q3A2F5|DNLJ_PELCD DNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
GN=ligA PE=3 SV=1
Length = 671
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 57 PFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHA 111
P +G TG L++ +RKQ E ERLGG+ S + + +V G K E A
Sbjct: 593 PLTGKSFVFTGSLTRFSRKQAQEMVERLGGRASGSVSKKTDCVVAGEAAGSKLEKA 648
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,209,745
Number of Sequences: 539616
Number of extensions: 5119829
Number of successful extensions: 14301
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 14212
Number of HSP's gapped (non-prelim): 109
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)