Query 017048
Match_columns 378
No_of_seqs 254 out of 1388
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12738 PTCB-BRCT: twin BRCT 99.6 7.6E-16 1.6E-20 115.6 1.4 63 61-127 1-63 (63)
2 PF00533 BRCT: BRCA1 C Terminu 99.5 6.4E-15 1.4E-19 113.8 5.2 75 54-132 2-78 (78)
3 KOG1929 Nucleotide excision re 99.5 3.9E-14 8.5E-19 151.5 8.9 174 54-278 6-183 (811)
4 smart00292 BRCT breast cancer 99.3 8.6E-13 1.9E-17 100.6 4.2 76 56-135 1-80 (80)
5 KOG3524 Predicted guanine nucl 99.3 1.8E-12 4E-17 133.8 5.2 168 54-275 115-285 (850)
6 cd00027 BRCT Breast Cancer Sup 99.3 2E-12 4.4E-17 96.4 4.1 70 60-133 1-72 (72)
7 KOG3226 DNA repair protein [Re 99.2 6.9E-12 1.5E-16 121.6 4.1 91 54-148 314-404 (508)
8 PF00533 BRCT: BRCA1 C Terminu 99.2 1.1E-11 2.4E-16 95.6 4.2 71 197-270 3-78 (78)
9 KOG1929 Nucleotide excision re 99.2 3.6E-11 7.8E-16 129.0 6.4 191 46-247 90-284 (811)
10 KOG0966 ATP-dependent DNA liga 99.1 4.8E-11 1E-15 125.4 6.1 212 53-278 629-877 (881)
11 KOG4362 Transcriptional regula 99.0 6.2E-10 1.4E-14 116.7 8.8 179 60-274 478-679 (684)
12 smart00292 BRCT breast cancer 99.0 2.6E-10 5.5E-15 86.8 4.4 73 199-273 2-80 (80)
13 cd00027 BRCT Breast Cancer Sup 98.8 2.6E-09 5.7E-14 79.3 3.8 67 202-271 1-72 (72)
14 PLN03122 Poly [ADP-ribose] pol 98.7 1.6E-08 3.4E-13 109.6 4.3 89 53-146 185-278 (815)
15 PLN03123 poly [ADP-ribose] pol 98.6 2.4E-08 5.2E-13 110.2 4.4 91 53-147 389-482 (981)
16 KOG3548 DNA damage checkpoint 98.6 5.5E-08 1.2E-12 103.8 5.1 195 55-275 923-1157(1176)
17 PF12738 PTCB-BRCT: twin BRCT 98.6 2.1E-08 4.7E-13 74.9 1.2 60 203-265 1-63 (63)
18 KOG3226 DNA repair protein [Re 98.1 2.9E-06 6.3E-11 83.1 3.8 83 196-281 314-399 (508)
19 PRK14350 ligA NAD-dependent DN 98.1 3.2E-06 7E-11 90.6 4.5 74 55-132 591-665 (669)
20 KOG2043 Signaling protein SWIF 98.0 3.2E-06 6.9E-11 92.8 3.0 137 61-234 660-797 (896)
21 PRK06063 DNA polymerase III su 98.0 7.1E-06 1.5E-10 80.8 4.3 73 56-132 231-305 (313)
22 PRK06195 DNA polymerase III su 97.9 1.9E-05 4E-10 77.6 5.6 78 55-132 218-306 (309)
23 PRK07956 ligA NAD-dependent DN 97.8 1.4E-05 2.9E-10 86.1 4.6 75 56-134 589-664 (665)
24 PRK14351 ligA NAD-dependent DN 97.8 1.7E-05 3.7E-10 85.4 4.6 76 55-134 607-684 (689)
25 COG0272 Lig NAD-dependent DNA 97.8 1.7E-05 3.6E-10 83.9 3.9 72 56-131 593-665 (667)
26 TIGR00575 dnlj DNA ligase, NAD 97.7 2.7E-05 5.8E-10 83.7 4.6 69 55-127 582-651 (652)
27 KOG2481 Protein required for n 97.6 4.6E-05 9.9E-10 77.6 2.9 81 197-281 325-413 (570)
28 COG5163 NOP7 Protein required 97.4 6.5E-05 1.4E-09 74.4 2.2 81 197-281 348-437 (591)
29 KOG3524 Predicted guanine nucl 97.4 0.00017 3.8E-09 75.8 5.1 91 53-148 206-296 (850)
30 KOG0966 ATP-dependent DNA liga 97.4 0.00053 1.2E-08 73.3 8.1 80 196-277 630-715 (881)
31 PLN03122 Poly [ADP-ribose] pol 97.3 0.00022 4.7E-09 78.0 4.8 83 196-282 186-276 (815)
32 KOG2093 Translesion DNA polyme 97.2 0.00012 2.6E-09 78.6 1.6 89 53-147 43-132 (1016)
33 PLN03123 poly [ADP-ribose] pol 97.0 0.00065 1.4E-08 75.8 4.9 82 197-281 391-478 (981)
34 KOG2481 Protein required for n 97.0 0.00062 1.3E-08 69.6 3.7 83 54-147 324-417 (570)
35 KOG0323 TFIIF-interacting CTD 96.8 0.00045 9.8E-09 73.2 1.0 93 54-149 438-534 (635)
36 COG5163 NOP7 Protein required 96.5 0.0016 3.4E-08 64.9 2.7 83 54-147 347-441 (591)
37 COG5275 BRCT domain type II [G 96.2 0.0054 1.2E-07 56.5 4.2 74 53-130 152-227 (276)
38 KOG2043 Signaling protein SWIF 95.9 0.0059 1.3E-07 67.6 3.2 62 217-281 671-736 (896)
39 PRK14350 ligA NAD-dependent DN 94.7 0.033 7.1E-07 60.3 4.5 72 197-270 591-665 (669)
40 PRK06063 DNA polymerase III su 93.9 0.081 1.8E-06 52.2 4.9 68 198-268 231-303 (313)
41 PRK06195 DNA polymerase III su 93.5 0.068 1.5E-06 52.5 3.6 49 197-247 218-266 (309)
42 PRK07956 ligA NAD-dependent DN 93.5 0.07 1.5E-06 57.9 4.0 73 198-272 589-664 (665)
43 COG0272 Lig NAD-dependent DNA 93.2 0.088 1.9E-06 56.3 4.1 70 198-269 593-665 (667)
44 PRK14351 ligA NAD-dependent DN 93.2 0.1 2.2E-06 56.8 4.5 74 197-272 607-684 (689)
45 TIGR00575 dnlj DNA ligase, NAD 92.2 0.13 2.7E-06 55.8 3.6 66 197-264 582-650 (652)
46 KOG3548 DNA damage checkpoint 91.7 0.14 3E-06 56.3 3.1 84 197-285 923-1034(1176)
47 PRK05601 DNA polymerase III su 85.4 0.86 1.9E-05 45.9 3.7 75 55-133 292-368 (377)
48 PF15552 DUF4657: Domain of un 77.0 0.95 2.1E-05 43.0 0.6 34 344-378 116-149 (301)
49 PF15101 DUF4557: Domain of un 76.6 5.9 0.00013 36.5 5.5 68 200-275 1-77 (212)
50 KOG2093 Translesion DNA polyme 64.0 4.8 0.0001 44.5 2.5 76 197-276 45-123 (1016)
51 KOG4362 Transcriptional regula 58.4 8.8 0.00019 41.6 3.2 124 205-342 480-623 (684)
52 COG5275 BRCT domain type II [G 57.5 18 0.00039 33.9 4.6 69 197-267 154-226 (276)
53 COG5067 DBF4 Protein kinase es 56.8 9.5 0.00021 38.6 2.9 51 53-103 118-168 (468)
54 PF00292 PAX: 'Paired box' dom 51.4 21 0.00045 30.6 3.8 43 319-372 16-58 (125)
55 COG5067 DBF4 Protein kinase es 50.3 12 0.00026 37.8 2.5 48 197-247 120-167 (468)
56 KOG0323 TFIIF-interacting CTD 46.8 6.1 0.00013 42.6 -0.2 74 197-273 439-520 (635)
57 PF14605 Nup35_RRM_2: Nup53/35 39.7 42 0.00091 24.0 3.4 32 62-93 3-34 (53)
58 PF02679 ComA: (2R)-phospho-3- 32.4 95 0.0021 29.7 5.4 110 200-336 11-125 (244)
59 COG0289 DapB Dihydrodipicolina 24.0 70 0.0015 30.9 2.9 34 59-92 94-127 (266)
No 1
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.56 E-value=7.6e-16 Score=115.62 Aligned_cols=63 Identities=40% Similarity=0.721 Sum_probs=55.2
Q ss_pred eEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeeh
Q 017048 61 LVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGW 127 (378)
Q Consensus 61 ~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~W 127 (378)
++||+||+++.++..|.++++.+||.|..+++.++|||||....+.||+.|.+ +|++||+|+|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~----~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKE----WGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHH----CTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHH----CCCcEECCCC
Confidence 58999999999999999999999999999999999999999999999999998 5899999999
No 2
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.54 E-value=6.4e-15 Score=113.77 Aligned_cols=75 Identities=25% Similarity=0.567 Sum_probs=70.0
Q ss_pred CCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeee--cCchhhHhhhhcCCCceEEEEeehhhhh
Q 017048 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF--GGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~--~~~Ky~~A~k~~~~~gi~IV~~~Wl~dc 131 (378)
+.++|+|+.||+++++..+++.+.++|+.+||++...+++.+||||+... .+.|+..|.. .+++||+++||.||
T Consensus 2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~----~~i~iV~~~Wi~~c 77 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIA----NGIPIVSPDWIEDC 77 (78)
T ss_dssp STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHH----TTSEEEETHHHHHH
T ss_pred CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHH----CCCeEecHHHHHHh
Confidence 57899999999999999999999999999999999999999999999887 7888888887 69999999999999
Q ss_pred h
Q 017048 132 V 132 (378)
Q Consensus 132 i 132 (378)
+
T Consensus 78 i 78 (78)
T PF00533_consen 78 I 78 (78)
T ss_dssp H
T ss_pred C
Confidence 6
No 3
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=99.50 E-value=3.9e-14 Score=151.49 Aligned_cols=174 Identities=18% Similarity=0.266 Sum_probs=144.0
Q ss_pred CCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhhh
Q 017048 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~ 133 (378)
...+|.|+.||.+|+++..+..|...+..+||.+...+++.|||||+.+..+.||..|.. .+++|++.+|+...+.
T Consensus 6 ~~~~~~~v~~~~t~i~p~~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~~s~~~~~a~~----~~~~~~~~~wi~~~~d 81 (811)
T KOG1929|consen 6 YSKPMSGVTFSPTGINPIKREELSKKFIKLGGIDFKDFTPSVTHLIVGSVTSSKYAAAHR----FDIKVLDSSWIDYIYD 81 (811)
T ss_pred cCcccCCceeccCcCCHHHHHHHHHHHHhcCceeeeccCCcCceeecccccccchhhhhc----CCCceecchHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999966654 6999999999999887
Q ss_pred cccccccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccceeecchhhH
Q 017048 134 RNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSE 213 (378)
Q Consensus 134 ~g~~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~~gfs~ 213 (378)
.+..-.|..+. .. ..+ ......|.|+.|++ .||+.
T Consensus 82 ~~~~~~e~~~~-~~------l~~-------------------------------------~~~~p~~~~~~Vc~-tgl~~ 116 (811)
T KOG1929|consen 82 LWLLNKEIRLL-DP------LRD-------------------------------------TMKCPGFFGLKVCL-TGLSG 116 (811)
T ss_pred HhhhhccCccC-cc------chh-------------------------------------hhcCCcccceEEEe-cccch
Confidence 77540111111 00 000 01246899999999 89999
Q ss_pred HHHHHHHHHHhhccceeeeeeeeccCCceEEecccch-hhh---hcCCCCccchhhHHhhhhHhhhhhH
Q 017048 214 ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSV-QKY---MGHSNNLVTPVWVLKTAKEKHVQRL 278 (378)
Q Consensus 214 ~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~-~~~---l~~~~~IVt~~WI~dcik~~~~qr~ 278 (378)
.++..++.+|..+||+.... +...+.+++..+... .+| +.+++++|+.+|+.+|+..+..+..
T Consensus 117 ~eK~ei~~~v~k~gg~~~~~--L~s~v~~~~~~~~~~~~kYe~al~wn~~v~~~~w~~~s~~~~~~~~~ 183 (811)
T KOG1929|consen 117 DEKSEIKILVPKHGGTLHRS--LSSDVNSLKILPEVKTEKYEQALKWNIPVVSDDWLFDSIEKTAVLET 183 (811)
T ss_pred HHHHHHHHHhhhcccEEehh--hhhhhheeeeccccchHHHHHHHhhCCccccHHHHhhhhcccccccc
Confidence 99999999999999999999 688888888876433 666 6799999999999999999887654
No 4
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.34 E-value=8.6e-13 Score=100.62 Aligned_cols=76 Identities=34% Similarity=0.570 Sum_probs=66.2
Q ss_pred CCccceEEEEcc-cCHHHHHHHHHHHHHhcCccCCCCCC-ccceEEEeeecCchh--hHhhhhcCCCceEEEEeehhhhh
Q 017048 56 APFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHP-QCTHLVVQSFGGRKF--EHALKHGSRNGLYIVTLGWFVDS 131 (378)
Q Consensus 56 ~~F~g~~I~vsG-~~~~~r~~L~~lI~~~GG~~~~~lt~-~~THLI~~~~~~~Ky--~~A~k~~~~~gi~IV~~~Wl~dc 131 (378)
++|+|+.||++| +....+..+.+++..+||++...++. ++||+|+.+....+. ..|.. .+++||+++||.||
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~----~~~~iV~~~Wi~~~ 76 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIA----LGIPIVTEDWLLDC 76 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHH----cCCCCccHHHHHHH
Confidence 479999999999 77899999999999999999999998 999999988766553 44443 68999999999999
Q ss_pred hhcc
Q 017048 132 VRRN 135 (378)
Q Consensus 132 i~~g 135 (378)
++.+
T Consensus 77 ~~~~ 80 (80)
T smart00292 77 LKAG 80 (80)
T ss_pred HHCc
Confidence 9764
No 5
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=99.30 E-value=1.8e-12 Score=133.84 Aligned_cols=168 Identities=17% Similarity=0.295 Sum_probs=134.6
Q ss_pred CCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhhh
Q 017048 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~ 133 (378)
.+-+|.|++.|+||+-+.+. .+-.+++.|||.+..+++..+||+|+....++||..|+- +.+++.|+||..|++
T Consensus 115 y~~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t-----~~~~~rp~wv~~aw~ 188 (850)
T KOG3524|consen 115 YCELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALV-----GVPTMRPDWVTEAWK 188 (850)
T ss_pred cchhhcCceeeeeccchhhH-HHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEee-----ccceechHhhhhhhc
Confidence 46789999999999987555 899999999999999999999999999999999999885 699999999999987
Q ss_pred cccccccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccceeecchhhH
Q 017048 134 RNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSE 213 (378)
Q Consensus 134 ~g~~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~~gfs~ 213 (378)
...++ .|.+..... . ..+....|.|+.|+| .||+.
T Consensus 189 ~rn~~---yfda~~~~f----------------------------~-------------d~hrl~~feg~~~~f-~gF~~ 223 (850)
T KOG3524|consen 189 HRNDS---YFDAMEPCF----------------------------V-------------DKHRLGVFEGLSLFF-HGFKQ 223 (850)
T ss_pred Ccchh---hhhhhccch----------------------------h-------------hhhccccccCCeEee-cCCcH
Confidence 54322 222221100 0 011236799999999 89999
Q ss_pred HHHHHHHHHHhhccceeeeeeeeccCCceEEecccchhhh---hcCCCCccchhhHHhhhhHhhh
Q 017048 214 ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY---MGHSNNLVTPVWVLKTAKEKHV 275 (378)
Q Consensus 214 ~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~~---l~~~~~IVt~~WI~dcik~~~~ 275 (378)
++.+.+.+..+..||++... +..+||||++++...-. .+....+|..+|.+=+|-.|.+
T Consensus 224 ee~~~m~~sle~~gg~~a~~---d~~cthvvv~e~~~~~~p~~~s~~~~~vk~ewfw~siq~g~~ 285 (850)
T KOG3524|consen 224 EEIDDMLRSLENTGGKLAPS---DTLCTHVVVNEDNDEVEPLAVSSNQVHVKKEWFWVSIQRGCC 285 (850)
T ss_pred HHHHHHHHHHHhcCCcccCC---CCCceeEeecCCccccccccccccceeecccceEEEEecchh
Confidence 99999999999999999985 89999999998543322 3456678899999988887744
No 6
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.30 E-value=2e-12 Score=96.36 Aligned_cols=70 Identities=36% Similarity=0.607 Sum_probs=62.6
Q ss_pred ceEEEEcccC-HHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCch-hhHhhhhcCCCceEEEEeehhhhhhh
Q 017048 60 GLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRK-FEHALKHGSRNGLYIVTLGWFVDSVR 133 (378)
Q Consensus 60 g~~I~vsG~~-~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~K-y~~A~k~~~~~gi~IV~~~Wl~dci~ 133 (378)
|+.|+++|.. +.++..|++++..+||++...++..+||||+......+ +..|.. .+++||+++||.||++
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~----~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIK----LGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHH----cCCeEecHHHHHHHhC
Confidence 6889999998 88999999999999999999999999999998876665 666665 6999999999999974
No 7
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.22 E-value=6.9e-12 Score=121.60 Aligned_cols=91 Identities=22% Similarity=0.376 Sum_probs=85.7
Q ss_pred CCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhhh
Q 017048 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~ 133 (378)
-.++++|++|.++||-+.+|..|+.....+|++|..+.+..+|||||..+.+.||.+..- +|-.||+.+||.+|..
T Consensus 314 l~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g----~Gg~IV~keWI~~Cy~ 389 (508)
T KOG3226|consen 314 LSKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEG----NGGTIVSKEWITECYA 389 (508)
T ss_pred HHHhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhccc----CCceEeeHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999998775 6889999999999999
Q ss_pred cccccccceeeeecc
Q 017048 134 RNVRLSESLYTVKSI 148 (378)
Q Consensus 134 ~g~~l~e~~Y~~~~~ 148 (378)
..++||...|.+...
T Consensus 390 ~kk~lp~rrYlm~~~ 404 (508)
T KOG3226|consen 390 QKKLLPIRRYLMHAG 404 (508)
T ss_pred HHhhccHHHHHhcCC
Confidence 999999999998764
No 8
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.21 E-value=1.1e-11 Score=95.55 Aligned_cols=71 Identities=18% Similarity=0.421 Sum_probs=62.3
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc--chhhh---hcCCCCccchhhHHhhh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED--SVQKY---MGHSNNLVTPVWVLKTA 270 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~--s~~~~---l~~~~~IVt~~WI~dci 270 (378)
..+|+|+.||+ .+++...++.|.++|+.+||++.+. ....+||+|++.. ...++ ...++.||+++||.||+
T Consensus 3 ~~~F~g~~f~i-~~~~~~~~~~l~~~i~~~GG~v~~~--~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 3 PKIFEGCTFCI-SGFDSDEREELEQLIKKHGGTVSNS--FSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp TTTTTTEEEEE-SSTSSSHHHHHHHHHHHTTEEEESS--SSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCCEEEEE-ccCCCCCHHHHHHHHHHcCCEEEee--cccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 57999999999 8888888999999999999999988 6999999999874 33333 56899999999999997
No 9
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=99.15 E-value=3.6e-11 Score=128.98 Aligned_cols=191 Identities=17% Similarity=0.167 Sum_probs=134.4
Q ss_pred cCCCcc--cCCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeec-CchhhHhhhhcCCCceEE
Q 017048 46 LASDSV--LPANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFG-GRKFEHALKHGSRNGLYI 122 (378)
Q Consensus 46 ~~~~~~--~~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~-~~Ky~~A~k~~~~~gi~I 122 (378)
++++|. ....+.|.|+.||+|||...++.++..+|..|||++...++..++|++..... +.||+.|++ |+++|
T Consensus 90 ~~~~~l~~~~~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~----wn~~v 165 (811)
T KOG1929|consen 90 RLLDPLRDTMKCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALK----WNIPV 165 (811)
T ss_pred ccCccchhhhcCCcccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHh----hCCcc
Confidence 455552 34788999999999999999999999999999999999999888888876654 499999998 58999
Q ss_pred EEeehhhhhhhcccccccceeeeeccCccCcccccccccccccCCCccccccchhhhh-hhhccCCCccccccccCcccc
Q 017048 123 VTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAK-QFNATGKHERDSNRSMNSTLS 201 (378)
Q Consensus 123 V~~~Wl~dci~~g~~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~-~s~~~e~~~~~~~~~~~~lF~ 201 (378)
|+.+|+++|+..+..+++..|++....+.-..+... . .......+.....+... .+......+....+....+..
T Consensus 166 ~~~~w~~~s~~~~~~~~~~~~e~~~~~~~is~~~~~-~---~~~~~~~~~s~t~~~~~~~~~~~~n~~~~p~~a~~~~~~ 241 (811)
T KOG1929|consen 166 VSDDWLFDSIEKTAVLETKPYEGAPVAEAISGPIGS-T---LPKEILDGDSRTANDTWSTSKVVTNIKVLPFQAKIGNLD 241 (811)
T ss_pred ccHHHHhhhhcccccccccccccccccceeccCCcc-c---cccccccccchhhhccccchhcccccccchhhhhccccc
Confidence 999999999999999999999987732211111000 0 00000000000000000 000001111122233344789
Q ss_pred ccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecc
Q 017048 202 GCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE 247 (378)
Q Consensus 202 G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~ 247 (378)
+|.+|+ .+++...+..|.+.++.+||..... ....++|++.+.
T Consensus 242 ~c~v~~-s~~~~~~~s~l~r~~~~g~~~~~~e--~~e~~st~l~~~ 284 (811)
T KOG1929|consen 242 DCLVET-SGTTSRNRSALSRLSNNGGSLRFLE--RLEETSTSLLGD 284 (811)
T ss_pred cceeee-cCCcccchhHhHHhhhcccceeecc--cCccccchhhcc
Confidence 999999 7888888999999999999999988 478889998876
No 10
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=99.14 E-value=4.8e-11 Score=125.37 Aligned_cols=212 Identities=20% Similarity=0.260 Sum_probs=125.1
Q ss_pred CCCCCccceEEEE-cccCH-HHHHHHHHHHHHhcCccCCCCCCccceEEE--eeecCchhhHhhhhcCCCceEEEEeehh
Q 017048 53 PANAPFSGLVICV-TGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVV--QSFGGRKFEHALKHGSRNGLYIVTLGWF 128 (378)
Q Consensus 53 ~~~~~F~g~~I~v-sG~~~-~~r~~L~~lI~~~GG~~~~~lt~~~THLI~--~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl 128 (378)
....+|.|+.||+ +|.+. ..+..++++|.++||.+..++.+..||+|+ +...+.+-..|++ +++.||+|+||
T Consensus 629 ~~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~----~~cdVl~p~Wl 704 (881)
T KOG0966|consen 629 KISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIK----RSCDVLKPAWL 704 (881)
T ss_pred chhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHh----ccCceeeHHHH
Confidence 4678999999999 67765 458999999999999999999998999996 3333444444554 59999999999
Q ss_pred hhhhhcccccccceeeeeccCccCcc-----cccccccc----c-------ccCCCccc--cccchhhhhhhhccCCCcc
Q 017048 129 VDSVRRNVRLSESLYTVKSIDEHGMH-----LDKLNRLV----G-------FAGTENSC--LPAGIYEAKQFNATGKHER 190 (378)
Q Consensus 129 ~dci~~g~~l~e~~Y~~~~~~~~~~~-----~d~~~~l~----~-------~s~~e~s~--lp~~i~E~~~s~~~e~~~~ 190 (378)
.||+...++++..++.+-...+.... .|.+..++ + ++...+|. +|... .-+...
T Consensus 705 ldcc~~~~l~p~~P~~~fh~~e~~~~~~a~~~D~~gdSy~~di~l~~l~~~ls~~k~S~ds~~~~~--------~~~~~~ 776 (881)
T KOG0966|consen 705 LDCCKKQRLLPWLPRDLFHATEKGREKLAKEVDCLGDSYENDIDLEQLKKVLSGIKKSQDSLPPMG--------ASEKDS 776 (881)
T ss_pred HHHHhhhhccccccHHHHhhCchHHHHHHHHHhhhcchhhhhccHHHHHHHHhhhhhcccccCchh--------hhhhhc
Confidence 99999999888766655443221110 11111111 0 00000000 00000 000000
Q ss_pred ccccccCccccccc-eeecch-hhHHHHHHHHHHHhhccceeeeee----eeccCCceEEecc--c---ch---hhh-hc
Q 017048 191 DSNRSMNSTLSGCS-MYVDSD-VSEELRNKVFEAATNEGATLVNQW----FVGCGASYVVCEE--D---SV---QKY-MG 255 (378)
Q Consensus 191 ~~~~~~~~lF~G~~-fyl~~g-fs~~~~~~L~~lI~~~GG~vv~~~----~~~~~vTHVV~~~--~---s~---~~~-l~ 255 (378)
.+.+. ..+|..++ ||.... ++. +-....-.++.+||.+++.- +....+||+|+.. . +. ++. +-
T Consensus 777 ~e~r~-~~~~~~~~~f~~~~~~~~s-e~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt 854 (881)
T KOG0966|consen 777 LERRF-SLFLSSLRMFYVLRRKLSS-EEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLT 854 (881)
T ss_pred HHHhh-ccccccceeeecccccccH-HHHHHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhc
Confidence 11111 23333333 333222 222 23344556888899999763 1345679999873 1 11 122 11
Q ss_pred CCCCccchhhHHhhhhHhhhhhH
Q 017048 256 HSNNLVTPVWVLKTAKEKHVQRL 278 (378)
Q Consensus 256 ~~~~IVt~~WI~dcik~~~~qr~ 278 (378)
..-+||.|.|+.+|+.++.++..
T Consensus 855 ~~rkv~~~~wv~~s~~~~~~~~e 877 (881)
T KOG0966|consen 855 IKRKVVAPSWVDHSINENCLLPE 877 (881)
T ss_pred ccccccCHHHHHHhhcccccCcc
Confidence 12289999999999998876654
No 11
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=99.03 E-value=6.2e-10 Score=116.72 Aligned_cols=179 Identities=18% Similarity=0.232 Sum_probs=129.4
Q ss_pred ceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeee------cCchhhHhhhhcCCCceEEEEeehhhhhhh
Q 017048 60 GLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF------GGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (378)
Q Consensus 60 g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~------~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~ 133 (378)
-.+.+++|.++.++..+.+..+. +.+.+....+||+|++.. .+.||..++ ..|.||++++|+..|++
T Consensus 478 k~~~~~s~l~p~ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gi----l~gkwi~~~~w~~~s~k 550 (684)
T KOG4362|consen 478 KLVLLVSGLTPSEKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGI----LRGKWILSYDWVLASLK 550 (684)
T ss_pred ceeeeeccCCcchHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHh----hcCceeeeHHHHHHHHH
Confidence 36778899999999999988888 888888899999999765 345555444 47999999999999999
Q ss_pred cccccccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccceeecchhhH
Q 017048 134 RNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSE 213 (378)
Q Consensus 134 ~g~~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~~gfs~ 213 (378)
.+++++|.+|++.-+.......-.-.+ .........||.|..||+...|+.
T Consensus 551 ~~~~~~eepfEl~~d~~~~~~~~~~~~-----------------------------~~a~s~~~kLf~gl~~~~~g~fs~ 601 (684)
T KOG4362|consen 551 LRKWVSEEPFELQIDVPGAREGPKEKR-----------------------------LRAESYKPKLFEGLKFYFVGDFSN 601 (684)
T ss_pred hcCCCCCCCeeEeecccCcccCccccc-----------------------------ccccccCcchhcCCcceeeccccc
Confidence 999999999999765332211000000 011123478999999999888988
Q ss_pred HHHHHHHHHHhhccceeeeeee---eccCC-ceEEecc----c--------chhhh-hcCCCCccchhhHHhhhhHhh
Q 017048 214 ELRNKVFEAATNEGATLVNQWF---VGCGA-SYVVCEE----D--------SVQKY-MGHSNNLVTPVWVLKTAKEKH 274 (378)
Q Consensus 214 ~~~~~L~~lI~~~GG~vv~~~~---~~~~v-THVV~~~----~--------s~~~~-l~~~~~IVt~~WI~dcik~~~ 274 (378)
.-.++|+.++...||++...-. .+..+ |.++... + ....+ ...+...|+..|++|++.-+.
T Consensus 602 ~p~~~l~~l~~~~gg~~l~~~~~~~~~~k~s~~~~~~~~~~~~~~~~~k~~~~ea~~~s~~a~~~~~~wvl~s~a~~~ 679 (684)
T KOG4362|consen 602 PPKEQLQELVHLAGGTILQVPRVAYSDKKKSTIVVLSEKPVLDSILWQKVNDAEALALSQRARAVSSSWVLDSIAGYQ 679 (684)
T ss_pred CcHHHHHHHHhhcCcceeeccCcccccccccceeEeecccCCCchhhhhhccHHHHHHhcCCCccchhhhhcchhcee
Confidence 7789999999999999986421 22333 3333322 1 12222 457889999999999997543
No 12
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.02 E-value=2.6e-10 Score=86.79 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=60.3
Q ss_pred cccccceeecchhhHHHHHHHHHHHhhccceeeeeeeecc-CCceEEecccch-----hhhhcCCCCccchhhHHhhhhH
Q 017048 199 TLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGC-GASYVVCEEDSV-----QKYMGHSNNLVTPVWVLKTAKE 272 (378)
Q Consensus 199 lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~-~vTHVV~~~~s~-----~~~l~~~~~IVt~~WI~dcik~ 272 (378)
+|+|+.||+...+....++.+.+++..+||++... ... .+||+|+.+... ......++.||+++||.||+++
T Consensus 2 ~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~--~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~~ 79 (80)
T smart00292 2 LFKGKVFVITGKFDKNERDELKELIEALGGKVTSS--LSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLKA 79 (80)
T ss_pred ccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecc--cCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHHC
Confidence 79999999953377788999999999999999998 455 899999987432 2224688999999999999976
Q ss_pred h
Q 017048 273 K 273 (378)
Q Consensus 273 ~ 273 (378)
+
T Consensus 80 ~ 80 (80)
T smart00292 80 G 80 (80)
T ss_pred c
Confidence 3
No 13
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.84 E-value=2.6e-09 Score=79.32 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=54.6
Q ss_pred ccceeecchhh-HHHHHHHHHHHhhccceeeeeeeeccCCceEEecccch----hhhhcCCCCccchhhHHhhhh
Q 017048 202 GCSMYVDSDVS-EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSV----QKYMGHSNNLVTPVWVLKTAK 271 (378)
Q Consensus 202 G~~fyl~~gfs-~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~----~~~l~~~~~IVt~~WI~dcik 271 (378)
|+.||+ .+.. ...+..|+++++.+||++.+. ....+||+|+..... ......++.||++.||.||++
T Consensus 1 ~~~~~i-~g~~~~~~~~~l~~~i~~~Gg~v~~~--~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVI-TGDLPSEERDELKELIEKLGGKVTSS--VSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEE-EecCCCcCHHHHHHHHHHcCCEEecc--ccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 678999 4544 667889999999999999998 578999999987332 233568899999999999984
No 14
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.66 E-value=1.6e-08 Score=109.59 Aligned_cols=89 Identities=25% Similarity=0.455 Sum_probs=78.4
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeec-----CchhhHhhhhcCCCceEEEEeeh
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFG-----GRKFEHALKHGSRNGLYIVTLGW 127 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~-----~~Ky~~A~k~~~~~gi~IV~~~W 127 (378)
...++|.|++|++||..+..|.+++++|+.+||+++..+ ..+||+|+.... +.|+..|.+ .||+||+.+|
T Consensus 185 ~~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~----lgIpIVsEd~ 259 (815)
T PLN03122 185 APGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAME----RGIPVVREAW 259 (815)
T ss_pred ccCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHH----cCCcCccHHH
Confidence 466789999999999876689999999999999999999 567888886643 378999987 6999999999
Q ss_pred hhhhhhcccccccceeeee
Q 017048 128 FVDSVRRNVRLSESLYTVK 146 (378)
Q Consensus 128 l~dci~~g~~l~e~~Y~~~ 146 (378)
|.+|++.++.+++..|.+.
T Consensus 260 L~d~i~~~k~~~~~~y~l~ 278 (815)
T PLN03122 260 LIDSIEKQEAQPLEAYDVV 278 (815)
T ss_pred HHHHHhcCCcccchhhhhc
Confidence 9999999999999999885
No 15
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.62 E-value=2.4e-08 Score=110.24 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=79.4
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeee---cCchhhHhhhhcCCCceEEEEeehhh
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF---GGRKFEHALKHGSRNGLYIVTLGWFV 129 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~---~~~Ky~~A~k~~~~~gi~IV~~~Wl~ 129 (378)
...++|.|+.|+++|-.+....++++.|+.+||+|+..++..+||||+... .+.|+..|.+ .+++||+.+||.
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~----~~ipIVsedwL~ 464 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARR----MKIPIVREDYLV 464 (981)
T ss_pred ccCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHh----cCCCcccHHHHH
Confidence 467899999999999877777899999999999999999999999999753 4566777776 589999999999
Q ss_pred hhhhcccccccceeeeec
Q 017048 130 DSVRRNVRLSESLYTVKS 147 (378)
Q Consensus 130 dci~~g~~l~e~~Y~~~~ 147 (378)
||+..+.++|+..|.+..
T Consensus 465 ds~~~~~~~p~~~y~~~~ 482 (981)
T PLN03123 465 DCFKKKKKLPFDKYKLEA 482 (981)
T ss_pred HHHhccccCcchhhhhcc
Confidence 999999999999887653
No 16
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=98.56 E-value=5.5e-08 Score=103.77 Aligned_cols=195 Identities=18% Similarity=0.163 Sum_probs=110.1
Q ss_pred CCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCC-CCC-------------------------ccceEEEee-ecCch
Q 017048 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPD-LHP-------------------------QCTHLVVQS-FGGRK 107 (378)
Q Consensus 55 ~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~-lt~-------------------------~~THLI~~~-~~~~K 107 (378)
..+|.||+|.+|+... ++++....++.+||.+... |.. .--.||+.. ..+.|
T Consensus 923 kniFd~cvF~lTsa~~-sd~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~K 1001 (1176)
T KOG3548|consen 923 KNIFDGCVFMLTSANR-SDSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTHK 1001 (1176)
T ss_pred cchhcceeEEEecccc-chhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHHHH
Confidence 4799999999999763 2233445555578765433 111 012334422 26789
Q ss_pred hhHhhhhcCCCceEEEEeehhhhhhhcccccccceeeeeccCccCcccccccccccccCCCccccccchh-hhhhhhccC
Q 017048 108 FEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIY-EAKQFNATG 186 (378)
Q Consensus 108 y~~A~k~~~~~gi~IV~~~Wl~dci~~g~~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~-E~~~s~~~e 186 (378)
|..|+. .|||.|++.||.+|+++++++|..+|.+....... .| +-+..++. .... +
T Consensus 1002 YLeaLA----~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGyS~r--ld-------------s~l~~~i~~fn~~----~ 1058 (1176)
T KOG3548|consen 1002 YLEALA----RGIPCVHNTFIQACGEQNRCVDYTDYLLPSGYSIR--LD-------------SQLMPAIEPFNPS----E 1058 (1176)
T ss_pred HHHHHH----cCCCcccHHHHHHHHhccccccchhhcccCccccc--cc-------------cccccCccccCch----h
Confidence 999997 69999999999999999999999999987632110 00 00000110 0000 0
Q ss_pred CCccccccccCccccccceeecchhhHHHHHHHHHHHhhccceeeeeeee---ccCC------ceEEecc--cchhhhh-
Q 017048 187 KHERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFV---GCGA------SYVVCEE--DSVQKYM- 254 (378)
Q Consensus 187 ~~~~~~~~~~~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~---~~~v------THVV~~~--~s~~~~l- 254 (378)
.+...-....+.+|.-..++..++ ....+.....+..+|+-+++.... +.+. -|++++. ++.-+|+
T Consensus 1059 nLkd~~l~vk~~l~~~~v~q~gp~--~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~~svmk~ad 1136 (1176)
T KOG3548|consen 1059 NLKDTTLYVKSTLSAREVTQTGPG--GTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFRDSVMKYAD 1136 (1176)
T ss_pred hccceeeEeeccccceeEEEecCC--cchHHHHHHHHHhhchheecccccccccccccccceeEEEecCccHHHHHHHHH
Confidence 000000001133333323333222 344566777888888888876321 1111 1222222 3444553
Q ss_pred cCCCCccchhhHHhhhhHhhh
Q 017048 255 GHSNNLVTPVWVLKTAKEKHV 275 (378)
Q Consensus 255 ~~~~~IVt~~WI~dcik~~~~ 275 (378)
.-+.++|+++||.+||-.|+.
T Consensus 1137 ~l~~pvvs~EWvIQtiI~~~~ 1157 (1176)
T KOG3548|consen 1137 TLGAPVVSSEWVIQTIILGKA 1157 (1176)
T ss_pred HhCCCccChhHhheeeecccc
Confidence 357999999999999987753
No 17
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=98.55 E-value=2.1e-08 Score=74.94 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=47.7
Q ss_pred cceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccchhhh---hcCCCCccchhh
Q 017048 203 CSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY---MGHSNNLVTPVW 265 (378)
Q Consensus 203 ~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~~---l~~~~~IVt~~W 265 (378)
++|++ +||++.+++.|.++++.+||++.+. +..++||+|+.....++| ...+++||+++|
T Consensus 1 ~~i~~-sg~~~~~~~~l~~~i~~~Gg~~~~~--lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICF-SGFSGKERSQLRKLIEALGGKYSKD--LTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEE-EEB-TTTCCHHHHHHHCTT-EEESS--SSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEE-CCCCHHHHHHHHHHHHHCCCEEecc--ccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 35777 7898888999999999999999999 599999999988666666 567899999999
No 18
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=98.06 E-value=2.9e-06 Score=83.07 Aligned_cols=83 Identities=19% Similarity=0.414 Sum_probs=72.2
Q ss_pred cCccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccchhhh---hcCCCCccchhhHHhhhhH
Q 017048 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY---MGHSNNLVTPVWVLKTAKE 272 (378)
Q Consensus 196 ~~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~~---l~~~~~IVt~~WI~dcik~ 272 (378)
.+.|++|..|.| +||..+.|..|+..+..+|+++-.+| +.++||+||.-....+| .+.+-.||+-+||++|...
T Consensus 314 l~klL~GVV~Vl-SGfqNP~Rs~LRskAl~LGAkY~pDW--~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~~ 390 (508)
T KOG3226|consen 314 LSKLLEGVVFVL-SGFQNPERSTLRSKALTLGAKYQPDW--NAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYAQ 390 (508)
T ss_pred HHHhhhceEEEE-ecccCchHHHHHHHHHhhcccccCCc--CCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHHH
Confidence 368999999999 89999999999999999999999998 99999999987655566 5678899999999999999
Q ss_pred hhhhhHHhh
Q 017048 273 KHVQRLVHI 281 (378)
Q Consensus 273 ~~~qr~~~~ 281 (378)
+++...-.|
T Consensus 391 kk~lp~rrY 399 (508)
T KOG3226|consen 391 KKLLPIRRY 399 (508)
T ss_pred HhhccHHHH
Confidence 887655444
No 19
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=98.06 E-value=3.2e-06 Score=90.61 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=66.9
Q ss_pred CCCccceEEEEccc-CHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 55 NAPFSGLVICVTGL-SKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 55 ~~~F~g~~I~vsG~-~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
..+|.|.+|||||. +...|.+++++|+.+||+++..++++|++||++...|.|.++|.+ .||+|++.+.+.+-+
T Consensus 591 ~~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~----LGI~Ii~e~~f~~~l 665 (669)
T PRK14350 591 NSFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANN----LGIKIMSLFDIKSYV 665 (669)
T ss_pred CCccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHH----cCCEEecHHHHHHHh
Confidence 45799999999995 457899999999999999999999999999999888999999998 699999999887644
No 20
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.99 E-value=3.2e-06 Score=92.77 Aligned_cols=137 Identities=23% Similarity=0.387 Sum_probs=97.2
Q ss_pred eEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeee-cCchhhHhhhhcCCCceEEEEeehhhhhhhcccccc
Q 017048 61 LVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLS 139 (378)
Q Consensus 61 ~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~-~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~~g~~l~ 139 (378)
+.+.++++.+ ...++..++.+||.+.... .++||+|+... .+.|+..|+. .|++||+++||.+|++.|.++|
T Consensus 660 ~~~lfs~~~~--~~~~k~~~k~lg~s~~ss~-~e~Th~i~~rirRT~k~Leai~----~G~~ivT~~wL~s~~k~g~~~d 732 (896)
T KOG2043|consen 660 IEVLFSDKND--GKNYKLAKKFLGGSVASSD-SEATHFIADRIRRTLKFLEAIS----SGKPLVTPQWLVSSLKSGEKLD 732 (896)
T ss_pred eeeeeeeccC--chhhhhHHhhccceeeccc-ccceeeeehhhhccHHHHhhhc----cCCcccchHHHHHHhhcccccc
Confidence 4455566543 3347888899998888777 47899999754 6788888886 6999999999999999999999
Q ss_pred cceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccceeecchhhHHHHHHH
Q 017048 140 ESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSEELRNKV 219 (378)
Q Consensus 140 e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~~gfs~~~~~~L 219 (378)
+..|.+.+..... + | +. ++-..+. +. .. ..+|.|..||+.+++.+ ....+
T Consensus 733 ek~yil~D~ekEk-~---~----gf------~l~ssl~------------RA--r~-~plL~g~~v~vtp~v~p-~~~~v 782 (896)
T KOG2043|consen 733 EKPYILHDEEKEK-E---F----GF------RLKSSLL------------RA--RA-DPLLEGINVHVTPSVTP-SPKTV 782 (896)
T ss_pred CccccccCHHHHh-c---c----Cc------chhhHHH------------Hh--hc-chhhcCceEEecccccc-Ccchh
Confidence 9999987642110 0 0 00 0000000 00 01 37899999999766654 35679
Q ss_pred HHHHhhccceeeeee
Q 017048 220 FEAATNEGATLVNQW 234 (378)
Q Consensus 220 ~~lI~~~GG~vv~~~ 234 (378)
.++|+..||.++...
T Consensus 783 ~eiie~~ggnvv~~~ 797 (896)
T KOG2043|consen 783 VEIIEISGGNVVSDS 797 (896)
T ss_pred HHHHhhcCcceeccc
Confidence 999999999999874
No 21
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.95 E-value=7.1e-06 Score=80.76 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=64.7
Q ss_pred CCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecC--chhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--RKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 56 ~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~--~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
++|.|.+|+|||-....|.+++++|+.+||++...+++++++||+++..+ .|..+|.+ .||+|++.+=+.+-+
T Consensus 231 ~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~----~gi~ii~e~~f~~ll 305 (313)
T PRK06063 231 PLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQ----LGVPVLDEAAFLELL 305 (313)
T ss_pred cccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHH----cCCccccHHHHHHHH
Confidence 45799999999976679999999999999999999999999999998766 79999987 699999987766544
No 22
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.87 E-value=1.9e-05 Score=77.62 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=63.9
Q ss_pred CCCccceEEEEcccC-HHHHHHHHHHHHHhcCccCCCCCCccceEEEeee---------cCchhhHhhhh-cCCCceEEE
Q 017048 55 NAPFSGLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF---------GGRKFEHALKH-GSRNGLYIV 123 (378)
Q Consensus 55 ~~~F~g~~I~vsG~~-~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~---------~~~Ky~~A~k~-~~~~gi~IV 123 (378)
..+|.|.+|||||-. .-.|.+++++|+.+||++..+++++|++||++.. .+.|.++|.+. ....+|+|+
T Consensus 218 ~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii 297 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFL 297 (309)
T ss_pred CccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEe
Confidence 457999999999975 5789999999999999999999999999999853 46799999763 112489999
Q ss_pred Eeehhhhhh
Q 017048 124 TLGWFVDSV 132 (378)
Q Consensus 124 ~~~Wl~dci 132 (378)
+.+=+++-+
T Consensus 298 ~E~~f~~l~ 306 (309)
T PRK06195 298 NEEEFLQKC 306 (309)
T ss_pred cHHHHHHHH
Confidence 877555543
No 23
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.85 E-value=1.4e-05 Score=86.08 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=67.6
Q ss_pred CCccceEEEEcccCH-HHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhhhc
Q 017048 56 APFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVRR 134 (378)
Q Consensus 56 ~~F~g~~I~vsG~~~-~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~~ 134 (378)
.+|.|.+|||||... ..|.+++++|+.+||.++..++++|++||++...|.|..+|.+ .||+|++.+-+.+.+..
T Consensus 589 ~~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~----lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 589 VDLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQE----LGIEVLDEEEFLRLLGE 664 (665)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHH----cCCeEEcHHHHHHHHhc
Confidence 459999999999864 5899999999999999999999999999999888899999998 69999999988876643
No 24
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.81 E-value=1.7e-05 Score=85.43 Aligned_cols=76 Identities=22% Similarity=0.238 Sum_probs=67.9
Q ss_pred CCCccceEEEEcccCH-HHHHHHHHHHHHhcCccCCCCCCccceEEEeeecC-chhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 55 NAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 55 ~~~F~g~~I~vsG~~~-~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~-~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
..+|.|.+|||||... -+|.+++++|+.+||++..+++++|++||++...| .|..+|.+ .||+|++.+-|.+-+
T Consensus 607 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~----lgi~ii~E~~f~~ll 682 (689)
T PRK14351 607 GDALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEA----NDVPTLDEEEFEELL 682 (689)
T ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHH----CCCeEecHHHHHHHH
Confidence 4579999999999864 58999999999999999999999999999998777 79999987 699999999888766
Q ss_pred hc
Q 017048 133 RR 134 (378)
Q Consensus 133 ~~ 134 (378)
+.
T Consensus 683 ~~ 684 (689)
T PRK14351 683 AE 684 (689)
T ss_pred Hh
Confidence 53
No 25
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=97.79 E-value=1.7e-05 Score=83.87 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=66.6
Q ss_pred CCccceEEEEcccC-HHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhh
Q 017048 56 APFSGLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (378)
Q Consensus 56 ~~F~g~~I~vsG~~-~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dc 131 (378)
.+|.|.+|++||.- .-.|.+.+++++.+||+++.++++++++||++...|.|+.+|.+ .||+|++.+++..-
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~e----Lgv~i~~E~~~~~l 665 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQE----LGVKIIDEEEFLAL 665 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHH----cCCeEecHHHHHHh
Confidence 88999999999975 48999999999999999999999999999999999999999998 69999999887653
No 26
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.73 E-value=2.7e-05 Score=83.71 Aligned_cols=69 Identities=22% Similarity=0.361 Sum_probs=62.2
Q ss_pred CCCccceEEEEcccC-HHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeeh
Q 017048 55 NAPFSGLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGW 127 (378)
Q Consensus 55 ~~~F~g~~I~vsG~~-~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~W 127 (378)
..+|.|.+|||||.. ...|.+++++|+.+||+++.++++++++||++...|.|+++|.+ .||+|++.+.
T Consensus 582 ~~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~----lgi~ii~E~~ 651 (652)
T TIGR00575 582 GSPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQE----LGIPIINEEE 651 (652)
T ss_pred CCCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHH----cCCcEechhh
Confidence 457999999999975 46899999999999999999999999999999888889999998 6999988654
No 27
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=97.55 E-value=4.6e-05 Score=77.65 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=59.6
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeee------e--eccCCceEEecccchhhhhcCCCCccchhhHHh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQW------F--VGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLK 268 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~------~--~~~~vTHVV~~~~s~~~~l~~~~~IVt~~WI~d 268 (378)
..+|+|+.||+...++ ++.|.=+|+++||.|.-.. + .++.+||=|++.+..+.-.. +-.-|.|+||.|
T Consensus 325 kslF~glkFfl~reVP---resL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v~-gR~YvQPQWvfD 400 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVP---RESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSVI-GRTYVQPQWVFD 400 (570)
T ss_pred HHHhhcceeeeeccCc---hHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCccceee-eeeeecchhhhh
Confidence 6899999999976665 5668889999999998651 1 24567999998755433211 234688999999
Q ss_pred hhhHhhhhhHHhh
Q 017048 269 TAKEKHVQRLVHI 281 (378)
Q Consensus 269 cik~~~~qr~~~~ 281 (378)
|+.++.+...-.|
T Consensus 401 svNar~llpt~~Y 413 (570)
T KOG2481|consen 401 SVNARLLLPTEKY 413 (570)
T ss_pred hccchhhccHhhh
Confidence 9999987655444
No 28
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=6.5e-05 Score=74.40 Aligned_cols=81 Identities=12% Similarity=0.276 Sum_probs=59.2
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeee---------eccCCceEEecccchhhhhcCCCCccchhhHH
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWF---------VGCGASYVVCEEDSVQKYMGHSNNLVTPVWVL 267 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~---------~~~~vTHVV~~~~s~~~~l~~~~~IVt~~WI~ 267 (378)
.++|+|++||++..++. +.|.=+|.++||.|+.+.- .+..+||-||+.+-++.-. .+..-|.|+||.
T Consensus 348 ~slFS~f~FyisreVp~---dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kv-egrtYiQPQw~f 423 (591)
T COG5163 348 KSLFSGFKFYISREVPG---DSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKV-EGRTYIQPQWLF 423 (591)
T ss_pred hhhhhceEEEEeccccc---hHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhhh-cceeeechHHHH
Confidence 57999999999755553 4577789999999987631 4567899999875443222 244568899999
Q ss_pred hhhhHhhhhhHHhh
Q 017048 268 KTAKEKHVQRLVHI 281 (378)
Q Consensus 268 dcik~~~~qr~~~~ 281 (378)
|||..|.+-+.-.|
T Consensus 424 DsiNkG~l~~~~~Y 437 (591)
T COG5163 424 DSINKGKLACVENY 437 (591)
T ss_pred hhhccccchhhhhc
Confidence 99999987654333
No 29
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=97.41 E-value=0.00017 Score=75.80 Aligned_cols=91 Identities=24% Similarity=0.367 Sum_probs=76.3
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
....+|+|+.|+|-||.+++...+....+..||.+.. -...|||||+.+....---.+. .....+|..+|+|-++
T Consensus 206 hrl~~feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~----s~~~~~vk~ewfw~si 280 (850)
T KOG3524|consen 206 HRLGVFEGLSLFFHGFKQEEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAV----SSNQVHVKKEWFWVSI 280 (850)
T ss_pred hccccccCCeEeecCCcHHHHHHHHHHHHhcCCcccC-CCCCceeEeecCCccccccccc----cccceeecccceEEEE
Confidence 4688999999999999999999999999999999999 4478999999665433222223 2577899999999999
Q ss_pred hcccccccceeeeecc
Q 017048 133 RRNVRLSESLYTVKSI 148 (378)
Q Consensus 133 ~~g~~l~e~~Y~~~~~ 148 (378)
..|.+..|..|.+...
T Consensus 281 q~g~~a~e~~yl~~~~ 296 (850)
T KOG3524|consen 281 QRGCCAIEDNYLLPTG 296 (850)
T ss_pred ecchhccccceecccc
Confidence 9999999999988664
No 30
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=97.36 E-value=0.00053 Score=73.30 Aligned_cols=80 Identities=21% Similarity=0.407 Sum_probs=63.6
Q ss_pred cCccccccceeecchhhHHH-HHHHHHHHhhccceeeeeeeeccCCceEEec--ccc-hhhh--hcCCCCccchhhHHhh
Q 017048 196 MNSTLSGCSMYVDSDVSEEL-RNKVFEAATNEGATLVNQWFVGCGASYVVCE--EDS-VQKY--MGHSNNLVTPVWVLKT 269 (378)
Q Consensus 196 ~~~lF~G~~fyl~~gfs~~~-~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~--~~s-~~~~--l~~~~~IVt~~WI~dc 269 (378)
...+|+|..||+.+|.+... +..|+++|..+||.++.. +..+.+++|+- ..+ ..++ +.....||.|.|++||
T Consensus 630 ~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~n--v~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldc 707 (881)
T KOG0966|consen 630 ISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQN--VGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDC 707 (881)
T ss_pred hhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEc--CCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHH
Confidence 37899999999988776544 688999999999999998 57778998863 222 2222 5678999999999999
Q ss_pred hhHhhhhh
Q 017048 270 AKEKHVQR 277 (378)
Q Consensus 270 ik~~~~qr 277 (378)
.+...++.
T Consensus 708 c~~~~l~p 715 (881)
T KOG0966|consen 708 CKKQRLLP 715 (881)
T ss_pred Hhhhhccc
Confidence 99987543
No 31
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=97.32 E-value=0.00022 Score=77.96 Aligned_cols=83 Identities=16% Similarity=0.274 Sum_probs=66.3
Q ss_pred cCccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccc--------hhhhhcCCCCccchhhHH
Q 017048 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS--------VQKYMGHSNNLVTPVWVL 267 (378)
Q Consensus 196 ~~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s--------~~~~l~~~~~IVt~~WI~ 267 (378)
....|.|++|.|...|+. .++.++.+|+.+||+++++ + +.+||+|+.+.. +++....+++||+.+||.
T Consensus 186 ~~kpL~G~~fviTGtl~~-sr~elK~~Ie~~GGkvsss--V-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~ 261 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSR-THQYWKKDIEKHGGKVANS--V-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLI 261 (815)
T ss_pred cCCCcCCcEEEEeCCCCC-CHHHHHHHHHHcCCEEccc--c-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHH
Confidence 356799999999655654 6788999999999999998 4 778888886522 333445689999999999
Q ss_pred hhhhHhhhhhHHhhh
Q 017048 268 KTAKEKHVQRLVHIS 282 (378)
Q Consensus 268 dcik~~~~qr~~~~s 282 (378)
+|++.+..+.+..|.
T Consensus 262 d~i~~~k~~~~~~y~ 276 (815)
T PLN03122 262 DSIEKQEAQPLEAYD 276 (815)
T ss_pred HHHhcCCcccchhhh
Confidence 999999887776653
No 32
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=97.23 E-value=0.00012 Score=78.62 Aligned_cols=89 Identities=12% Similarity=0.232 Sum_probs=71.3
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccC-CCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhh
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYS-PDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~-~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dc 131 (378)
.....|.|+.||+.|...+...+++..-..+||.+. .+....+||+|+......+.... ..-...+++|+.+|
T Consensus 43 t~~s~fs~is~~~ngs~~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~vk~~------~~~~~~~~e~iie~ 116 (1016)
T KOG2093|consen 43 TGSSSFSGISISVNGSTDESANELKLQNMFHTGASAASYERSGTENIIAQGLPADLVKGF------TIPKHISIEWIIEC 116 (1016)
T ss_pred CCcceeeeeeeccCCccccchHHHhhhhhhcccccccccccccceeeecccchHHHhccc------cchhhhcHHHHHHH
Confidence 578899999999999999888899999999999988 56667899999977643333211 23356889999999
Q ss_pred hhcccccccceeeeec
Q 017048 132 VRRNVRLSESLYTVKS 147 (378)
Q Consensus 132 i~~g~~l~e~~Y~~~~ 147 (378)
.+.+..+.-.+|....
T Consensus 117 ~~~~~~~~~~~~~~~t 132 (1016)
T KOG2093|consen 117 CENGMDVGYYPYQLYT 132 (1016)
T ss_pred HhccCccccccceeec
Confidence 9999998877777654
No 33
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=97.03 E-value=0.00065 Score=75.77 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=63.6
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc------chhhhhcCCCCccchhhHHhhh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------SVQKYMGHSNNLVTPVWVLKTA 270 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~------s~~~~l~~~~~IVt~~WI~dci 270 (378)
...|.|+.|.+...|+. ....+++.|+.+||++... +...+||+|+..+ ..++....+++||+.+||.||+
T Consensus 391 ~~~l~~~~i~i~G~~~~-~~~~~k~~Ie~~GG~~s~~--v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~ 467 (981)
T PLN03123 391 SEFLGDLKVSIVGASKE-KVTEWKAKIEEAGGVFHAT--VKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCF 467 (981)
T ss_pred CCCcCCeEEEEecCCCC-cHHHHHHHHHhcCCEEeee--ccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHH
Confidence 46799999999655654 3478999999999999998 7889999999861 1222334579999999999999
Q ss_pred hHhhhhhHHhh
Q 017048 271 KEKHVQRLVHI 281 (378)
Q Consensus 271 k~~~~qr~~~~ 281 (378)
+.+..++...|
T Consensus 468 ~~~~~~p~~~y 478 (981)
T PLN03123 468 KKKKKLPFDKY 478 (981)
T ss_pred hccccCcchhh
Confidence 98865554443
No 34
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=96.96 E-value=0.00062 Score=69.60 Aligned_cols=83 Identities=25% Similarity=0.302 Sum_probs=63.4
Q ss_pred CCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCC----------CCccceEEEeeec-CchhhHhhhhcCCCceEE
Q 017048 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDL----------HPQCTHLVVQSFG-GRKFEHALKHGSRNGLYI 122 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~l----------t~~~THLI~~~~~-~~Ky~~A~k~~~~~gi~I 122 (378)
...+|+|++|.++.--+ ++.|.-+|...||.++-+- +...||=|+..+. ..+| .|-.-
T Consensus 324 ~kslF~glkFfl~reVP--resL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v---------~gR~Y 392 (570)
T KOG2481|consen 324 HKSLFSGLKFFLNREVP--RESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV---------IGRTY 392 (570)
T ss_pred HHHHhhcceeeeeccCc--hHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee---------eeeee
Confidence 45699999999986543 3458889999999987662 1234888886652 2333 25667
Q ss_pred EEeehhhhhhhcccccccceeeeec
Q 017048 123 VTLGWFVDSVRRNVRLSESLYTVKS 147 (378)
Q Consensus 123 V~~~Wl~dci~~g~~l~e~~Y~~~~ 147 (378)
|-|+||+||+.++.++|...|.+..
T Consensus 393 vQPQWvfDsvNar~llpt~~Y~~G~ 417 (570)
T KOG2481|consen 393 VQPQWVFDSVNARLLLPTEKYFPGK 417 (570)
T ss_pred ecchhhhhhccchhhccHhhhCCCc
Confidence 9999999999999999999999865
No 35
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=96.78 E-value=0.00045 Score=73.25 Aligned_cols=93 Identities=20% Similarity=0.381 Sum_probs=79.3
Q ss_pred CCCCccceEEEEcccCH----HHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhh
Q 017048 54 ANAPFSGLVICVTGLSK----EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFV 129 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~----~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~ 129 (378)
....+.|+.+.++|+.+ .++..+-.....+|.....+++..+||+|+.++.+.|...|... ..++||++.|+|
T Consensus 438 ~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~---~~~~Vv~~~wl~ 514 (635)
T KOG0323|consen 438 RTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVS---GSAKVVNAAWLW 514 (635)
T ss_pred hhHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHhhccCcceeeccccc---cceeEechhHHH
Confidence 55688999999999743 45566777778899999999999999999999999998888763 459999999999
Q ss_pred hhhhcccccccceeeeeccC
Q 017048 130 DSVRRNVRLSESLYTVKSID 149 (378)
Q Consensus 130 dci~~g~~l~e~~Y~~~~~~ 149 (378)
.|..++..++|..|.+....
T Consensus 515 ~~~e~w~~v~ek~~~l~~~~ 534 (635)
T KOG0323|consen 515 RSLEKWGKVEEKLEPLDDDQ 534 (635)
T ss_pred HHHHHhcchhcccccccccc
Confidence 99999999999999887643
No 36
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0016 Score=64.88 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=64.1
Q ss_pred CCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCC-----------CCCccceEEEeeec-CchhhHhhhhcCCCceE
Q 017048 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPD-----------LHPQCTHLVVQSFG-GRKFEHALKHGSRNGLY 121 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~-----------lt~~~THLI~~~~~-~~Ky~~A~k~~~~~gi~ 121 (378)
...+|.|++|+++.--+. .-|+-+|...||.+... ++..+||-||..+- ..|+ .|..
T Consensus 347 ~~slFS~f~FyisreVp~--dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kv---------egrt 415 (591)
T COG5163 347 LKSLFSGFKFYISREVPG--DSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKV---------EGRT 415 (591)
T ss_pred hhhhhhceEEEEeccccc--hHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhhh---------ccee
Confidence 467999999999875432 23788899999987543 44578998986652 2333 2777
Q ss_pred EEEeehhhhhhhcccccccceeeeec
Q 017048 122 IVTLGWFVDSVRRNVRLSESLYTVKS 147 (378)
Q Consensus 122 IV~~~Wl~dci~~g~~l~e~~Y~~~~ 147 (378)
-|.|+||+||+..|.+.+...|.+..
T Consensus 416 YiQPQw~fDsiNkG~l~~~~~Y~~G~ 441 (591)
T COG5163 416 YIQPQWLFDSINKGKLACVENYCVGK 441 (591)
T ss_pred eechHHHHhhhccccchhhhhccccc
Confidence 89999999999999999999998865
No 37
>COG5275 BRCT domain type II [General function prediction only]
Probab=96.21 E-value=0.0054 Score=56.54 Aligned_cols=74 Identities=19% Similarity=0.162 Sum_probs=61.6
Q ss_pred CCCCCccceEEEEcccCH-HHHHHHHHHHHHhcCccCCCCCCccceEEEeeec-CchhhHhhhhcCCCceEEEEeehhhh
Q 017048 53 PANAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFG-GRKFEHALKHGSRNGLYIVTLGWFVD 130 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~-~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~-~~Ky~~A~k~~~~~gi~IV~~~Wl~d 130 (378)
.....+.|++|.|+|..+ -+|.+-+.+|..+||.++...+..+|+||.++.. ..|.+.+.+ .+|+.+..+=|..
T Consensus 152 g~~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKq----lkIkaidEegf~~ 227 (276)
T COG5275 152 GERECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQ----LKIKAIDEEGFDS 227 (276)
T ss_pred CCcccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHH----hCCccccHHHHHH
Confidence 567789999999999876 7899999999999999999999999999998764 467777776 5888876555433
No 38
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.85 E-value=0.0059 Score=67.62 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=50.1
Q ss_pred HHHHHHHhhccceeeeeeeeccCCceEEecc-cchhhh---hcCCCCccchhhHHhhhhHhhhhhHHhh
Q 017048 217 NKVFEAATNEGATLVNQWFVGCGASYVVCEE-DSVQKY---MGHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (378)
Q Consensus 217 ~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~-~s~~~~---l~~~~~IVt~~WI~dcik~~~~qr~~~~ 281 (378)
..+++.+++.||.+.++ ...+||+|+.. ....++ ++.++.||++.||.+|++.|.+.....|
T Consensus 671 ~~~k~~~k~lg~s~~ss---~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~y 736 (896)
T KOG2043|consen 671 KNYKLAKKFLGGSVASS---DSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKPY 736 (896)
T ss_pred hhhhhHHhhccceeecc---cccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCccc
Confidence 34788899999999998 78899999986 222233 5788999999999999999988766554
No 39
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=94.73 E-value=0.033 Score=60.29 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=58.0
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc---chhhhhcCCCCccchhhHHhhh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTA 270 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~---s~~~~l~~~~~IVt~~WI~dci 270 (378)
...|.|.+|.|...|+.-.|+.++++|+.+||++.++ +..++++||++.. ++++.-..++.|++.+.+++-+
T Consensus 591 ~~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ss--VSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~l 665 (669)
T PRK14350 591 NSFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTC--VTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSYV 665 (669)
T ss_pred CCccCCcEEEEecccCCCCHHHHHHHHHHcCCEEecc--ccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHHh
Confidence 3569999999965676656899999999999999999 8999999999862 3444445678999888877643
No 40
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=93.91 E-value=0.081 Score=52.17 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=53.5
Q ss_pred ccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc-----chhhhhcCCCCccchhhHHh
Q 017048 198 STLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-----SVQKYMGHSNNLVTPVWVLK 268 (378)
Q Consensus 198 ~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~-----s~~~~l~~~~~IVt~~WI~d 268 (378)
.+|.|.+|.|...++ ..|+.++++|+.+||++.++ ++.++++||+.+. ++++....++.|++..=+++
T Consensus 231 ~l~~g~~~v~TG~l~-~~R~e~~~~~~~~G~~v~~s--Vs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ 303 (313)
T PRK06063 231 PLVQGMRVALSAEVS-RTHEELVERILHAGLAYSDS--VDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLE 303 (313)
T ss_pred cccCCCEEEEecCCC-CCHHHHHHHHHHcCCEecCc--cccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHH
Confidence 578999999966676 46889999999999999999 7999999999852 23444456788887654444
No 41
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=93.51 E-value=0.068 Score=52.54 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=42.4
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecc
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE 247 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~ 247 (378)
...|.|.+|.|...|..-.|+.++++|+..||++.++ ++.+++++|++.
T Consensus 218 ~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~s--Vs~~t~~lV~G~ 266 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSS--VTKKTTYLVTNT 266 (309)
T ss_pred CccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCC--cccCceEEEECC
Confidence 3469999999966675556888999999999999999 799999999984
No 42
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=93.50 E-value=0.07 Score=57.85 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=58.0
Q ss_pred ccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc---chhhhhcCCCCccchhhHHhhhhH
Q 017048 198 STLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAKE 272 (378)
Q Consensus 198 ~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~---s~~~~l~~~~~IVt~~WI~dcik~ 272 (378)
..|.|.+|+|...++.-.|+.++++|+..||++.++ ++.++++||++.. .+++....++.|++.+-+++.+.+
T Consensus 589 ~~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~s--Vs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 589 VDLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGS--VSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRLLGE 664 (665)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCc--ccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHHHhc
Confidence 349999999955565446889999999999999999 7999999999863 344445568999998888776643
No 43
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=93.24 E-value=0.088 Score=56.33 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=57.9
Q ss_pred ccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc---chhhhhcCCCCccchhhHHhh
Q 017048 198 STLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKT 269 (378)
Q Consensus 198 ~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~---s~~~~l~~~~~IVt~~WI~dc 269 (378)
..|.|.+|.|...++.-.|+..+.+++..||+|.++ +..++++||++++ .+++...-++.|.+.+++++-
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~S--VSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~l 665 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGS--VSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLAL 665 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEece--ecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHHh
Confidence 789999999976677666888999999999999999 7999999999873 344545678999998887653
No 44
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=93.17 E-value=0.1 Score=56.81 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=59.0
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc----chhhhhcCCCCccchhhHHhhhhH
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED----SVQKYMGHSNNLVTPVWVLKTAKE 272 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~----s~~~~l~~~~~IVt~~WI~dcik~ 272 (378)
...|.|.+|+|...+..-.|+.++++|+..||++.++ +..+++++|++.. .+++.-..++.|++.+-+.+-+++
T Consensus 607 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~s--Vs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 607 GDALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGS--VSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCC--cCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHHh
Confidence 4569999999965565446888999999999999999 7999999999862 233444568899998888876654
No 45
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=92.16 E-value=0.13 Score=55.79 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=51.7
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc---chhhhhcCCCCccchh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPV 264 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~---s~~~~l~~~~~IVt~~ 264 (378)
...|.|.+|+|...++.-.|+.++++|+.+||++.++ +..+++++|++.. .+++....++.|++.+
T Consensus 582 ~~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~s--Vs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~ 650 (652)
T TIGR00575 582 GSPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASS--VSKKTDYVIAGEKAGSKLAKAQELGIPIINEE 650 (652)
T ss_pred CCCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCC--cCCCccEEEECCCCChHHHHHHHcCCcEechh
Confidence 3569999999955566556888999999999999999 7999999999863 3444445677777654
No 46
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=91.65 E-value=0.14 Score=56.28 Aligned_cols=84 Identities=12% Similarity=0.261 Sum_probs=53.6
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeec----c--CCceE-----------------Eeccc--chh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVG----C--GASYV-----------------VCEED--SVQ 251 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~----~--~vTHV-----------------V~~~~--s~~ 251 (378)
..+|.||.|.|...+.. ......-+..+||.+.+..+.. . +.+.+ ++.+. ...
T Consensus 923 kniFd~cvF~lTsa~~s--d~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~ 1000 (1176)
T KOG3548|consen 923 KNIFDGCVFMLTSANRS--DSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTH 1000 (1176)
T ss_pred cchhcceeEEEeccccc--hhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHHH
Confidence 38999999999554532 3446667777999999875211 0 11111 11110 123
Q ss_pred hh---hcCCCCccchhhHHhhhhHhhhhhHHhhhHhH
Q 017048 252 KY---MGHSNNLVTPVWVLKTAKEKHVQRLVHISADL 285 (378)
Q Consensus 252 ~~---l~~~~~IVt~~WI~dcik~~~~qr~~~~s~dl 285 (378)
+| ++.++..|++.||-+|++.+.+++ |+.+|
T Consensus 1001 KYLeaLA~giPcVh~~fI~aC~e~nr~Vd---y~~YL 1034 (1176)
T KOG3548|consen 1001 KYLEALARGIPCVHNTFIQACGEQNRCVD---YTDYL 1034 (1176)
T ss_pred HHHHHHHcCCCcccHHHHHHHHhcccccc---chhhc
Confidence 34 578999999999999999985555 55444
No 47
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=85.41 E-value=0.86 Score=45.94 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=61.5
Q ss_pred CCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeec--CchhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFG--GRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 55 ~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~--~~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
.++-+|+.|.|++-...++..|...+...|=.|+..++..+.-|||+... .-|-.+|.. .|||+++-.=|.+.+
T Consensus 292 ~~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~----~gipl~~d~~fl~~~ 367 (377)
T PRK05601 292 KGLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQR----KGIPLLSDVAFLAAV 367 (377)
T ss_pred CccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhh----cCCCccCHHHHHHHH
Confidence 34778999999999888889999999999999999999998888887653 345555554 699999988777766
Q ss_pred h
Q 017048 133 R 133 (378)
Q Consensus 133 ~ 133 (378)
.
T Consensus 368 ~ 368 (377)
T PRK05601 368 E 368 (377)
T ss_pred H
Confidence 4
No 48
>PF15552 DUF4657: Domain of unknown function (DUF4657)
Probab=77.02 E-value=0.95 Score=43.02 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHhHhhccC
Q 017048 344 RMQIRLAVKMLMNITHLCFLMRKRMARIQKLHLQI 378 (378)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (378)
.-=+|+--.-|--+.|||.+ -.+|||+|.|+||+
T Consensus 116 ~AwaCLPGQGLRYLEHLCLv-LEqMArLQQL~LQL 149 (301)
T PF15552_consen 116 EAWACLPGQGLRYLEHLCLV-LEQMARLQQLYLQL 149 (301)
T ss_pred cceeecCCccHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34468776777788999965 57899999999984
No 49
>PF15101 DUF4557: Domain of unknown function (DUF4557)
Probab=76.62 E-value=5.9 Score=36.49 Aligned_cols=68 Identities=16% Similarity=0.377 Sum_probs=50.0
Q ss_pred ccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecc----cch-----hhhhcCCCCccchhhHHhhh
Q 017048 200 LSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE----DSV-----QKYMGHSNNLVTPVWVLKTA 270 (378)
Q Consensus 200 F~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~----~s~-----~~~l~~~~~IVt~~WI~dci 270 (378)
|+|++-+|....+.+ +..+=..+||++++ | ..+.++...+ +.. ..|+..+.+|.++.||..|.
T Consensus 1 F~~q~aWFs~SVs~~----~~~~Wv~~GG~isd-~---~~AdFLFS~DAshpDT~~iy~S~dY~~d~aTVFha~yl~a~~ 72 (212)
T PF15101_consen 1 FQGQRAWFSGSVSQD----LRQFWVKEGGTISD-W---DAADFLFSCDASHPDTARIYQSLDYIEDRATVFHASYLSAVA 72 (212)
T ss_pred CCCceeeeecCcchH----HHHHHHhcCCccCC-h---hhcceeeecCCCCcchHhhhhhhhhhhcCeeeeeHHHHHHHh
Confidence 789999997777765 55566789999998 3 4455555544 222 34577889999999999999
Q ss_pred hHhhh
Q 017048 271 KEKHV 275 (378)
Q Consensus 271 k~~~~ 275 (378)
.+...
T Consensus 73 na~s~ 77 (212)
T PF15101_consen 73 NAESK 77 (212)
T ss_pred hhhhc
Confidence 88654
No 50
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=64.05 E-value=4.8 Score=44.51 Aligned_cols=76 Identities=13% Similarity=0.241 Sum_probs=56.8
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccc---hhhhhcCCCCccchhhHHhhhhHh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS---VQKYMGHSNNLVTPVWVLKTAKEK 273 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s---~~~~l~~~~~IVt~~WI~dcik~~ 273 (378)
.+.|+|..||.+ |...+..+++++.-..+||...... .-+..+|+|+..-. ++.+ ......+++|+.+|.+.|
T Consensus 45 ~s~fs~is~~~n-gs~~e~~nelk~~~~~~t~~~~~~~-~rs~T~~ii~~~l~a~~vk~~--~~~~~~~~e~iie~~~~~ 120 (1016)
T KOG2093|consen 45 SSSFSGISISVN-GSTDESANELKLQNMFHTGASAASY-ERSGTENIIAQGLPADLVKGF--TIPKHISIEWIIECCENG 120 (1016)
T ss_pred cceeeeeeeccC-CccccchHHHhhhhhhccccccccc-ccccceeeecccchHHHhccc--cchhhhcHHHHHHHHhcc
Confidence 678999999994 5445566778888889999988442 57888999998622 2222 345567899999999999
Q ss_pred hhh
Q 017048 274 HVQ 276 (378)
Q Consensus 274 ~~q 276 (378)
...
T Consensus 121 ~~~ 123 (1016)
T KOG2093|consen 121 MDV 123 (1016)
T ss_pred Ccc
Confidence 754
No 51
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=58.42 E-value=8.8 Score=41.60 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=75.2
Q ss_pred eeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc-c-----hhhh---hcCCCCccchhhHHhhhhHhhh
Q 017048 205 MYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-S-----VQKY---MGHSNNLVTPVWVLKTAKEKHV 275 (378)
Q Consensus 205 fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~-s-----~~~~---l~~~~~IVt~~WI~dcik~~~~ 275 (378)
..+-.+..++....+...++. ++...| +..+||+|+.-+ + ..++ +..++.|++..|++.|++.++|
T Consensus 480 ~~~~s~l~p~ek~~v~~~a~~---t~~k~~--~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~~~ 554 (684)
T KOG4362|consen 480 VLLVSGLTPSEKQLVEKFAVD---TISKFW--IEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLRKW 554 (684)
T ss_pred eeeeccCCcchHHHHHHHHHH---HHhhcc--CCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhcCC
Confidence 333357777777777777766 666654 899999999752 1 1233 4589999999999999999988
Q ss_pred hhHHhh--hH---------hHHHHHhHHHHhhhccchhhhhcCCCCCCCchhhhhhccHHHHHHHHHhhhhhhccchh
Q 017048 276 QRLVHI--SA---------DLARQVGMMLENIQNGIAREEINGGNVPEDAQSCKNKISQEKRQQTVNLAKNGVRSRRS 342 (378)
Q Consensus 276 qr~~~~--s~---------dl~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 342 (378)
...-.+ .- ...++ .-.-+.-+.+++.|+.-+ .+.+...-+..|++|-+|...+.+++.
T Consensus 555 ~~eepfEl~~d~~~~~~~~~~~~~--~a~s~~~kLf~gl~~~~~-------g~fs~~p~~~l~~l~~~~gg~~l~~~~ 623 (684)
T KOG4362|consen 555 VSEEPFELQIDVPGAREGPKEKRL--RAESYKPKLFEGLKFYFV-------GDFSNPPKEQLQELVHLAGGTILQVPR 623 (684)
T ss_pred CCCCCeeEeecccCcccCcccccc--cccccCcchhcCCcceee-------cccccCcHHHHHHHHhhcCcceeeccC
Confidence 643221 11 11111 111111233333332211 233444567888999999888877654
No 52
>COG5275 BRCT domain type II [General function prediction only]
Probab=57.49 E-value=18 Score=33.87 Aligned_cols=69 Identities=10% Similarity=0.092 Sum_probs=48.2
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc----chhhhhcCCCCccchhhHH
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED----SVQKYMGHSNNLVTPVWVL 267 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~----s~~~~l~~~~~IVt~~WI~ 267 (378)
...+.|.+|.|...+..-.|+.-..++..+||.|... .....|+||.++. .+++.-..++..+..+=+.
T Consensus 154 ~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~--pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~ 226 (276)
T COG5275 154 RECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAV--PSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFD 226 (276)
T ss_pred cccccccEEEEecccccccchhHHHHHHHhCCeeecc--cccceeEEEecCCCChHHHHHHHHhCCccccHHHHH
Confidence 4567999999944445455777888999999999988 6888899988763 2333334566666554433
No 53
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=56.76 E-value=9.5 Score=38.56 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=46.4
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeee
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF 103 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~ 103 (378)
....+|....++.-|-++..+..+++-+-.+||.+...++..+||+|+...
T Consensus 118 ~Y~~aFp~f~fY~dn~s~~~khRvk~gf~~LGa~v~tfF~~~VThfiTrR~ 168 (468)
T COG5067 118 TYCCAFPAFKFYKDNKSGKRKHRVKEGFCELGAVVFTFFEEHVTHFITRRF 168 (468)
T ss_pred hhhcccchhhhhhcCCCHHHHHHHHHHHHHhhhhhheeeccceEEEEEeee
Confidence 456789999999999999888889999999999999999999999999764
No 54
>PF00292 PAX: 'Paired box' domain; InterPro: IPR001523 The paired box is a conserved 124 amino acid N-terminal domain of unknown function that usually, but not always, precedes a homeobox domain (see IPR001356 from INTERPRO) [, ]. Paired box genes are expressed in alternate segments of the developing fruit fly, the observed grouping of segments into pairs depending on the position of the segment in the segmental array, and not on the identity of the segment as in the case of homeotic genes. This implies that the genes affect different processes from those altered by homeotic genes.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 6PAX_A 1K78_E 1MDM_A 2K27_A 1PDN_C.
Probab=51.36 E-value=21 Score=30.59 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=26.4
Q ss_pred hhccHHHHHHHHHhhhhhhccchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 017048 319 NKISQEKRQQTVNLAKNGVRSRRSRRMQIRLAVKMLMNITHLCFLMRKRMARIQ 372 (378)
Q Consensus 319 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (378)
..++.+.|++||++|+.|+| +|-..+ .+.++|-|. .|=+.|.+
T Consensus 16 rPLp~~~R~rIvela~~G~r--------p~~Isr-~l~Vs~gcV--sKIl~Ry~ 58 (125)
T PF00292_consen 16 RPLPNELRQRIVELAKEGVR--------PCDISR-QLRVSHGCV--SKILSRYR 58 (125)
T ss_dssp SSS-HHHHHHHHHHHHTT----------HHHHHH-HHT--HHHH--HHHHHHHH
T ss_pred ccCcHHHHHHHHHHhhhcCC--------HHHHHH-HHccchhHH--HHHHHHHH
Confidence 34567799999999999987 455444 668899985 34444443
No 55
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=50.30 E-value=12 Score=37.84 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=42.2
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecc
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE 247 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~ 247 (378)
-..|....||+ .+.++..+..+++-+...||.|..- .+..|||+++-.
T Consensus 120 ~~aFp~f~fY~-dn~s~~~khRvk~gf~~LGa~v~tf--F~~~VThfiTrR 167 (468)
T COG5067 120 CCAFPAFKFYK-DNKSGKRKHRVKEGFCELGAVVFTF--FEEHVTHFITRR 167 (468)
T ss_pred hcccchhhhhh-cCCCHHHHHHHHHHHHHhhhhhhee--eccceEEEEEee
Confidence 46799999999 5778877888999999999999987 699999999975
No 56
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=46.75 E-value=6.1 Score=42.59 Aligned_cols=74 Identities=15% Similarity=0.310 Sum_probs=48.4
Q ss_pred Cccccccceeecchhh----HHHHHHHHHHHhhccceeeeeeeeccCCceEEecccchh-hh---hcCCCCccchhhHHh
Q 017048 197 NSTLSGCSMYVDSDVS----EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQ-KY---MGHSNNLVTPVWVLK 268 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs----~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~-~~---l~~~~~IVt~~WI~d 268 (378)
...+.||.+.| +|+- +......-......|+..+.. ....+||+|......+ .+ ....+.||.+.|++.
T Consensus 439 ~~v~~~~~~vf-Sg~~P~~~~~~~s~~~~~~~~~g~vs~~~--~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~ 515 (635)
T KOG0323|consen 439 TKVLKGSQIVF-SGLHPTGSTDESADILGVAQQLGAVSAPD--VSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWR 515 (635)
T ss_pred hHHhhccceee-cccccCcCCcchhhhhhhhhcccceeccc--ccchhhhHHhhccCcceeeccccccceeEechhHHHH
Confidence 35567777777 3321 112233444556677777766 6889999999874332 22 334589999999999
Q ss_pred hhhHh
Q 017048 269 TAKEK 273 (378)
Q Consensus 269 cik~~ 273 (378)
|+..-
T Consensus 516 ~~e~w 520 (635)
T KOG0323|consen 516 SLEKW 520 (635)
T ss_pred HHHHh
Confidence 99754
No 57
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=39.70 E-value=42 Score=23.96 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=26.6
Q ss_pred EEEEcccCHHHHHHHHHHHHHhcCccCCCCCC
Q 017048 62 VICVTGLSKEARKQVMEATERLGGQYSPDLHP 93 (378)
Q Consensus 62 ~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~ 93 (378)
.|+|+||++.....+.......|.....+++.
T Consensus 3 wI~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~~ 34 (53)
T PF14605_consen 3 WISVSGFPPDLAEEVLEHFASFGEIVDIYVPE 34 (53)
T ss_pred EEEEEeECchHHHHHHHHHHhcCCEEEEEcCC
Confidence 58999999998888888888888877777763
No 58
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=32.39 E-value=95 Score=29.67 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=60.9
Q ss_pred ccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccchh----hhhcCCCCccchhhHHhhhhHhhh
Q 017048 200 LSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQ----KYMGHSNNLVTPVWVLKTAKEKHV 275 (378)
Q Consensus 200 F~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~----~~l~~~~~IVt~~WI~dcik~~~~ 275 (378)
-.|.+..+|.|++.. .++.+++..|-- +|-+ --.--|+.+++.+-++ -|..+++.+.+..|+++-.-.
T Consensus 11 ~~GlT~v~Dkglg~~---~~~dlLe~ag~y-ID~~-K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~--- 82 (244)
T PF02679_consen 11 SRGLTMVIDKGLGLR---YLEDLLESAGDY-IDFL-KFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQ--- 82 (244)
T ss_dssp SSS-EEEEESS--HH---HHHHHHHHHGGG--SEE-EE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHH---
T ss_pred CCCcEEEecCCCCHH---HHHHHHHHhhhh-ccEE-EecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHh---
Confidence 478899999998754 355666665544 3332 2234477777774443 335789999999999997655
Q ss_pred hhHHhhhHhHHHHHhHHHHhhh-ccchhhhhcCCCCCCCchhhhhhccHHHHHHHHHhhhhh
Q 017048 276 QRLVHISADLARQVGMMLENIQ-NGIAREEINGGNVPEDAQSCKNKISQEKRQQTVNLAKNG 336 (378)
Q Consensus 276 qr~~~~s~dl~~~~~~~le~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 336 (378)
|.. +...++... .++.-.||+-+.+ +++.++|..+++.|++.
T Consensus 83 q~~----------~~~yl~~~k~lGf~~IEiSdGti---------~l~~~~r~~~I~~~~~~ 125 (244)
T PF02679_consen 83 QGK----------FDEYLEECKELGFDAIEISDGTI---------DLPEEERLRLIRKAKEE 125 (244)
T ss_dssp TT-----------HHHHHHHHHHCT-SEEEE--SSS------------HHHHHHHHHHHCCT
T ss_pred cCh----------HHHHHHHHHHcCCCEEEecCCce---------eCCHHHHHHHHHHHHHC
Confidence 333 223333333 4555566665443 36788999999888764
No 59
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=24.00 E-value=70 Score=30.93 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=30.4
Q ss_pred cceEEEEcccCHHHHHHHHHHHHHhcCccCCCCC
Q 017048 59 SGLVICVTGLSKEARKQVMEATERLGGQYSPDLH 92 (378)
Q Consensus 59 ~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt 92 (378)
..++|..|||++++.+.|+++.+..+..+++|++
T Consensus 94 ~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfS 127 (266)
T COG0289 94 KPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFS 127 (266)
T ss_pred CCeEEECCCCCHHHHHHHHHHHhhCCEEEeccch
Confidence 4578899999999999999999998888888886
Done!