Query 017048
Match_columns 378
No_of_seqs 254 out of 1388
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3olc_X DNA topoisomerase 2-bin 100.0 2.5E-28 8.4E-33 236.2 11.6 179 54-283 102-284 (298)
2 3ii6_X DNA ligase 4; XRCC4, NH 99.9 6.7E-27 2.3E-31 222.4 9.7 223 53-281 6-261 (263)
3 1l0b_A BRCA1; TANDEM-BRCT, thr 99.9 8.1E-27 2.8E-31 216.2 9.9 192 55-281 2-210 (229)
4 1t15_A Breast cancer type 1 su 99.9 4.5E-26 1.5E-30 208.5 11.6 189 59-281 3-208 (214)
5 2nte_A BARD-1, BRCA1-associate 99.9 9.4E-27 3.2E-31 213.6 6.1 179 60-278 2-208 (210)
6 3u3z_A Microcephalin; DNA repa 99.9 3.5E-26 1.2E-30 208.9 7.4 182 60-281 11-195 (199)
7 3sqd_A PAX-interacting protein 99.9 8.6E-24 2.9E-28 195.8 7.0 187 54-275 10-211 (219)
8 1z56_C DNA ligase IV; DNA repa 99.9 9.1E-25 3.1E-29 207.1 -0.1 220 54-281 2-259 (264)
9 2etx_A Mediator of DNA damage 99.9 5.9E-24 2E-28 195.3 5.0 184 54-275 6-194 (209)
10 1kzy_C Tumor suppressor P53-bi 99.9 5E-23 1.7E-27 195.3 9.4 188 53-278 11-246 (259)
11 3l46_A Protein ECT2; alternati 99.9 6E-23 2.1E-27 170.7 5.8 91 53-147 17-107 (112)
12 3al2_A DNA topoisomerase 2-bin 99.9 2.9E-22 1E-26 187.4 11.0 204 57-280 6-225 (235)
13 2cou_A ECT2 protein; BRCT doma 99.8 8.4E-22 2.9E-26 163.2 6.3 91 53-147 8-98 (109)
14 2vxb_A DNA repair protein RHP9 99.8 5.9E-21 2E-25 179.2 8.6 195 56-277 1-240 (241)
15 3l3e_A DNA topoisomerase 2-bin 99.8 6.9E-20 2.3E-24 150.9 4.4 91 53-147 11-104 (107)
16 2d8m_A DNA-repair protein XRCC 99.8 2.1E-19 7.2E-24 153.0 6.3 93 53-149 18-110 (129)
17 3l41_A BRCT-containing protein 99.8 8.7E-20 3E-24 169.0 2.5 183 57-276 5-207 (220)
18 4id3_A DNA repair protein REV1 99.8 1.9E-19 6.4E-24 143.4 2.6 87 53-145 3-91 (92)
19 2ebw_A DNA repair protein REV1 99.7 6.7E-19 2.3E-23 142.1 3.5 87 53-145 8-95 (97)
20 3olc_X DNA topoisomerase 2-bin 99.7 1.8E-18 6.2E-23 167.1 4.0 133 12-148 140-287 (298)
21 3pa6_A Microcephalin; BRCT dom 99.6 6.1E-17 2.1E-21 133.5 4.6 92 55-150 5-100 (107)
22 1wf6_A Similar to S.pombe -RAD 99.6 9.5E-16 3.3E-20 130.8 7.3 93 53-147 36-128 (132)
23 3pc6_A DNA repair protein XRCC 99.6 1.2E-15 4.1E-20 124.9 6.3 92 54-147 4-96 (104)
24 3ef1_A RNA polymerase II subun 99.5 2.1E-15 7E-20 152.0 3.9 89 54-145 349-441 (442)
25 3ef0_A RNA polymerase II subun 99.5 3.6E-15 1.2E-19 147.9 3.7 89 54-145 279-371 (372)
26 2cou_A ECT2 protein; BRCT doma 99.5 3.2E-14 1.1E-18 117.4 4.9 84 196-282 9-95 (109)
27 3l46_A Protein ECT2; alternati 99.4 4.4E-14 1.5E-18 117.2 4.9 84 196-282 18-104 (112)
28 1wf6_A Similar to S.pombe -RAD 99.4 1.1E-13 3.9E-18 117.9 6.1 85 194-281 35-124 (132)
29 4id3_A DNA repair protein REV1 99.4 6.3E-14 2.1E-18 111.2 4.1 83 197-282 5-90 (92)
30 2ebw_A DNA repair protein REV1 99.4 3E-13 1E-17 108.7 4.6 84 196-281 9-93 (97)
31 3pc6_A DNA repair protein XRCC 99.3 2.3E-12 7.7E-17 105.4 5.1 83 197-281 5-92 (104)
32 3l3e_A DNA topoisomerase 2-bin 99.3 2.2E-12 7.6E-17 105.7 4.4 85 196-283 12-102 (107)
33 1l7b_A DNA ligase; BRCT, autos 99.2 2.4E-12 8.1E-17 103.1 3.2 76 54-133 4-79 (92)
34 2d8m_A DNA-repair protein XRCC 99.2 8.8E-12 3E-16 105.7 3.7 82 197-281 20-104 (129)
35 2k6g_A Replication factor C su 99.2 1.3E-11 4.6E-16 101.7 4.0 79 53-135 28-108 (109)
36 3pc7_A DNA ligase 3; DNA repai 99.1 2.7E-11 9.3E-16 95.8 4.7 73 196-276 13-85 (88)
37 2ep8_A Pescadillo homolog 1; A 99.1 1.7E-11 5.7E-16 99.6 3.1 82 53-144 8-100 (100)
38 2ep8_A Pescadillo homolog 1; A 99.1 3.5E-11 1.2E-15 97.7 4.3 82 196-281 9-99 (100)
39 3pa6_A Microcephalin; BRCT dom 99.1 2.7E-11 9.4E-16 99.6 3.1 85 197-283 5-95 (107)
40 3ii6_X DNA ligase 4; XRCC4, NH 99.1 5.6E-11 1.9E-15 112.6 5.6 92 54-145 161-263 (263)
41 2ebu_A Replication factor C su 99.1 8.7E-11 3E-15 97.2 6.0 78 53-134 18-97 (112)
42 2coe_A Deoxynucleotidyltransfe 99.1 1.2E-10 4.2E-15 97.3 5.5 82 195-278 16-108 (120)
43 2jw5_A DNA polymerase lambda; 99.0 8.2E-11 2.8E-15 96.5 3.7 91 54-146 8-104 (106)
44 2jw5_A DNA polymerase lambda; 99.0 3.7E-11 1.2E-15 98.6 1.3 84 196-281 8-101 (106)
45 1z56_C DNA ligase IV; DNA repa 99.0 1E-10 3.5E-15 110.3 4.0 95 53-147 156-263 (264)
46 2cok_A Poly [ADP-ribose] polym 99.0 1.7E-10 5.8E-15 95.6 2.6 78 55-136 8-88 (113)
47 3pc7_A DNA ligase 3; DNA repai 98.9 2.9E-10 9.8E-15 89.9 2.9 76 53-141 12-88 (88)
48 3u3z_A Microcephalin; DNA repa 98.9 2.8E-10 9.5E-15 103.4 2.5 82 54-146 116-198 (199)
49 2coe_A Deoxynucleotidyltransfe 98.9 6E-09 2E-13 87.1 8.6 90 53-145 16-113 (120)
50 1t15_A Breast cancer type 1 su 98.9 1.1E-09 3.6E-14 99.5 4.2 90 54-147 112-212 (214)
51 3sqd_A PAX-interacting protein 98.8 2.1E-09 7.2E-14 99.1 5.5 135 197-343 11-158 (219)
52 1l0b_A BRCA1; TANDEM-BRCT, thr 98.8 1.5E-09 5.1E-14 99.8 3.8 91 55-148 115-215 (229)
53 2nte_A BARD-1, BRCA1-associate 98.7 8.3E-09 2.8E-13 93.9 5.3 133 202-343 2-141 (210)
54 2dun_A POL MU, DNA polymerase 98.6 1.7E-08 5.7E-13 85.2 4.6 79 197-277 8-100 (133)
55 3al2_A DNA topoisomerase 2-bin 98.6 2.8E-08 9.4E-13 92.5 5.0 82 199-281 6-91 (235)
56 3ef0_A RNA polymerase II subun 98.6 1.3E-08 4.6E-13 100.7 2.9 83 197-282 280-370 (372)
57 1kzy_C Tumor suppressor P53-bi 98.6 2.2E-08 7.4E-13 94.5 4.0 82 197-281 13-133 (259)
58 2dun_A POL MU, DNA polymerase 98.6 5.7E-08 1.9E-12 81.9 5.9 90 53-145 6-106 (133)
59 2etx_A Mediator of DNA damage 98.6 2.4E-08 8.3E-13 91.0 3.7 90 55-149 113-205 (209)
60 2vxb_A DNA repair protein RHP9 98.6 1.9E-08 6.4E-13 94.0 2.6 83 198-280 1-113 (241)
61 3ef1_A RNA polymerase II subun 98.5 3.5E-08 1.2E-12 99.4 1.7 82 197-281 350-439 (442)
62 3l41_A BRCT-containing protein 98.4 8.8E-08 3E-12 88.3 1.8 124 201-339 7-147 (220)
63 1l7b_A DNA ligase; BRCT, autos 98.3 8.9E-07 3.1E-11 70.5 5.4 73 197-272 5-80 (92)
64 1dgs_A DNA ligase; AMP complex 98.1 3E-07 1E-11 97.0 0.0 77 55-135 585-661 (667)
65 3t7k_A RTT107, regulator of TY 98.1 1.7E-06 6E-11 80.2 4.9 170 59-272 21-238 (256)
66 2owo_A DNA ligase; protein-DNA 98.0 5.7E-07 2E-11 94.9 0.0 75 55-133 595-670 (671)
67 2k6g_A Replication factor C su 97.9 6E-06 2E-10 67.8 3.5 75 197-273 30-108 (109)
68 2cok_A Poly [ADP-ribose] polym 97.8 1.1E-05 3.7E-10 66.6 3.8 74 197-273 8-87 (113)
69 3huf_A DNA repair and telomere 97.8 4.9E-05 1.7E-09 73.0 8.1 171 58-275 113-306 (325)
70 2ebu_A Replication factor C su 97.8 1.4E-05 4.6E-10 65.9 3.5 74 197-272 20-97 (112)
71 2l42_A DNA-binding protein RAP 97.6 5E-05 1.7E-09 60.4 3.8 81 196-281 8-92 (106)
72 2l42_A DNA-binding protein RAP 97.1 7E-05 2.4E-09 59.6 -0.2 82 54-147 8-96 (106)
73 4gns_A Chitin biosynthesis pro 96.0 0.0035 1.2E-07 55.0 3.0 91 53-147 157-255 (290)
74 1dgs_A DNA ligase; AMP complex 95.4 0.0026 8.8E-08 67.2 0.0 74 197-273 585-661 (667)
75 2owo_A DNA ligase; protein-DNA 94.6 0.0062 2.1E-07 64.3 0.0 73 197-271 595-670 (671)
76 3huf_A DNA repair and telomere 92.3 0.11 3.9E-06 49.7 4.5 87 200-292 113-208 (325)
77 3qbz_A DDK kinase regulatory s 91.6 0.11 3.9E-06 44.7 3.2 66 55-124 56-142 (160)
78 3oq4_A DBF4, protein DNA52; DD 88.5 0.47 1.6E-05 39.7 4.5 54 72-129 31-92 (134)
79 3qbz_A DDK kinase regulatory s 87.0 0.3 1E-05 42.0 2.5 49 197-247 56-116 (160)
80 3oq0_A DBF4, protein DNA52; DD 86.6 0.69 2.4E-05 39.4 4.5 74 53-130 16-110 (151)
81 3oq0_A DBF4, protein DNA52; DD 85.2 1.2 4.1E-05 38.0 5.3 48 198-247 19-78 (151)
82 3t7k_A RTT107, regulator of TY 80.4 1 3.4E-05 41.7 3.2 52 221-272 41-98 (256)
83 4gns_A Chitin biosynthesis pro 79.9 1.5 5.1E-05 38.4 3.9 73 198-274 160-244 (290)
84 3oq4_A DBF4, protein DNA52; DD 75.9 3.1 0.0001 34.8 4.5 32 214-247 30-61 (134)
85 2k2w_A Recombination and DNA r 73.2 1.3 4.5E-05 36.2 1.6 34 197-233 11-44 (118)
86 3rt3_C NS1, NS1B, non-structur 27.3 55 0.0019 24.8 3.5 33 264-296 25-58 (109)
87 1qwg_A PSL synthase;, (2R)-pho 21.4 1.4E+02 0.0046 27.4 5.6 110 200-336 12-126 (251)
No 1
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.95 E-value=2.5e-28 Score=236.20 Aligned_cols=179 Identities=22% Similarity=0.317 Sum_probs=152.9
Q ss_pred CCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhhh
Q 017048 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~ 133 (378)
...+|+|++||+||+.+.++..|.++|+.+||+++.++++++||||+....+.||..|.+ .|++||+++||.+|++
T Consensus 102 y~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~----~gi~IV~~~Wl~~c~~ 177 (298)
T 3olc_X 102 YNMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAAN----LKKPILLPSWIKTLWE 177 (298)
T ss_dssp CCCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHH----TTCCEECHHHHHHHHH
T ss_pred cccccCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHH----CCCeEeeHHHHHHHHH
Confidence 367999999999999999999999999999999999999999999999999999999997 6999999999999999
Q ss_pred cccccccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccceeecchhhH
Q 017048 134 RNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSE 213 (378)
Q Consensus 134 ~g~~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~~gfs~ 213 (378)
.++.++...|. .. +.+ .....+|+|++|++ +|+.+
T Consensus 178 ~~~~~~~~~~~--~~-----~~~-------------------------------------~~~~~~f~g~~i~~-tG~~~ 212 (298)
T 3olc_X 178 KSQEKKITRYT--DI-----NME-------------------------------------DFKCPIFLGCIICV-TGLCG 212 (298)
T ss_dssp HHHTTCCSSGG--GS-----CGG-------------------------------------GGBCCTTTTCEEEE-CSCCH
T ss_pred cCCcCCccccc--cc-----ccc-------------------------------------cccccccCCeEEEE-eCCCC
Confidence 99877544331 00 000 11246899999999 78888
Q ss_pred HHHHHHHHHHhhccceeeeeeeec-cCCceEEecccchhhh---hcCCCCccchhhHHhhhhHhhhhhHHhhhH
Q 017048 214 ELRNKVFEAATNEGATLVNQWFVG-CGASYVVCEEDSVQKY---MGHSNNLVTPVWVLKTAKEKHVQRLVHISA 283 (378)
Q Consensus 214 ~~~~~L~~lI~~~GG~vv~~~~~~-~~vTHVV~~~~s~~~~---l~~~~~IVt~~WI~dcik~~~~qr~~~~s~ 283 (378)
..++.++++|+.+||++.+. +. .++||||+......+| ...+++||+++||+||++.|.+++.-.|..
T Consensus 213 ~~r~~l~~li~~~GG~~~~~--ls~~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~~g~~lde~~Y~l 284 (298)
T 3olc_X 213 LDRKEVQQLTVKHGGQYMGQ--LKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQDESIYKT 284 (298)
T ss_dssp HHHHHHHHHHHHTTCEECSS--CCTTTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHHHTSCCCGGGSBS
T ss_pred ccHHHHHHHHHHcCCEEece--ecCCCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHHCCCCCCchhcCC
Confidence 88999999999999999998 56 7999999987544444 456899999999999999999988877744
No 2
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.94 E-value=6.7e-27 Score=222.39 Aligned_cols=223 Identities=14% Similarity=0.173 Sum_probs=149.4
Q ss_pred CCCCCccceEEEE-cccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhh
Q 017048 53 PANAPFSGLVICV-TGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (378)
Q Consensus 53 ~~~~~F~g~~I~v-sG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dc 131 (378)
...++|+|++||| +|.....+++|+++|..|||++..++++.+||+|+.. .+.|+..++++ ..++||+|+||.||
T Consensus 6 ~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~-~~~k~~~~~~~---g~~~IV~p~Wv~Dc 81 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGS-ENIRVKNIILS---NKHDVVKPAWLLEC 81 (263)
T ss_dssp CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSS-CCHHHHHHHHS---CSCCEECHHHHHHH
T ss_pred cCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCC-CCHHHHHHHhc---CCCCEeehHHHHHH
Confidence 4688999999998 6887788999999999999999999998888878854 45888888873 24999999999999
Q ss_pred hhcccccccceeeeeccCc-----cCcccccccccccccC--CCccccccchh--h----hhhhhccCCCc--ccccccc
Q 017048 132 VRRNVRLSESLYTVKSIDE-----HGMHLDKLNRLVGFAG--TENSCLPAGIY--E----AKQFNATGKHE--RDSNRSM 196 (378)
Q Consensus 132 i~~g~~l~e~~Y~~~~~~~-----~~~~~d~~~~l~~~s~--~e~s~lp~~i~--E----~~~s~~~e~~~--~~~~~~~ 196 (378)
+++++++|..+|.+-...+ ...+.|.|...+.... .+...+-..+. + ...+...+.++ ......+
T Consensus 82 i~~~~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 161 (263)
T 3ii6_X 82 FKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSP 161 (263)
T ss_dssp HHHTSCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHHHHHHHHTCTTCG
T ss_pred HhcCCcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccccCCchhhHHHHHHHHHhhcccCCc
Confidence 9999999988886654322 1123344433321100 00000000000 0 00000000000 1111235
Q ss_pred Cccccccceeecc---------hhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccc-----hhhh---hcCCCC
Q 017048 197 NSTLSGCSMYVDS---------DVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS-----VQKY---MGHSNN 259 (378)
Q Consensus 197 ~~lF~G~~fyl~~---------gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s-----~~~~---l~~~~~ 259 (378)
..+|+||+|||+. .++....+.++.+|+++||++++. +++.+||||+.++. ++.+ ....++
T Consensus 162 ~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~--l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~ 239 (263)
T 3ii6_X 162 LSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSC--LAEGVSHVIIGEDHSRVADFKAFRRTFKRKFK 239 (263)
T ss_dssp GGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESS--CCTTCCEEEECSCCTTHHHHHHHHHTCSSCCE
T ss_pred chhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecC--CCCCceEEEECCCCccHHHHHHHHhhcCCCCE
Confidence 7899999999942 122224456788999999999999 58899999998632 2222 346789
Q ss_pred ccchhhHHhhhhHhhhhhHHhh
Q 017048 260 LVTPVWVLKTAKEKHVQRLVHI 281 (378)
Q Consensus 260 IVt~~WI~dcik~~~~qr~~~~ 281 (378)
||++.||.||+++|.+.+.-.|
T Consensus 240 iV~~~Wv~dci~~~~~l~E~~Y 261 (263)
T 3ii6_X 240 ILKESWVTDSIDKCELQEENQY 261 (263)
T ss_dssp EEETHHHHHHHHTTSCCCGGGT
T ss_pred EeChHHHHHHHHcCCcCCHhhC
Confidence 9999999999999988876555
No 3
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.93 E-value=8.1e-27 Score=216.22 Aligned_cols=192 Identities=18% Similarity=0.221 Sum_probs=141.8
Q ss_pred CCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeee------cCchhhHhhhhcCCCceEEEEeehh
Q 017048 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF------GGRKFEHALKHGSRNGLYIVTLGWF 128 (378)
Q Consensus 55 ~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~------~~~Ky~~A~k~~~~~gi~IV~~~Wl 128 (378)
...+++++||+||+++.++..|.+++..+||.++.+++..|||||+... .+.||..|+. .|+|||+++||
T Consensus 2 ~~~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~----~g~~IV~~~Wl 77 (229)
T 1l0b_A 2 ERAERDISMVVSGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIA----GGKWIVSYSWV 77 (229)
T ss_dssp -CCCCCCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHH----TTCEEEETHHH
T ss_pred CCCCCCeEEEEcCCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHH----CCCcEecHHHH
Confidence 3578999999999999999999999999999999999999999999875 6889999997 69999999999
Q ss_pred hhhhhcccccccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccceeec
Q 017048 129 VDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVD 208 (378)
Q Consensus 129 ~dci~~g~~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~ 208 (378)
.||+++|+++||++|.+......... ...|.... .....+|+|+.||+.
T Consensus 78 ~~~~~~~~~~~e~~y~~~~~~~~~~~---------------~~~~~~~r----------------~~~~~lF~g~~~~~~ 126 (229)
T 1l0b_A 78 IKSIQERKLLSVHEFEVKGDVVTGSN---------------HQGPRRSR----------------ESQEKLFEGLQIYCC 126 (229)
T ss_dssp HHHHTTTSCCCSGGGBCCEETTTCSS---------------SCHHHHHH----------------HHC--CCTTCEEEEC
T ss_pred HHHHHCCCcCChHHeEeccccccccc---------------cccchhhh----------------hhhhhhhcCceEEEE
Confidence 99999999999999998753221100 00000000 012479999999995
Q ss_pred chhhHHHHHHHHHHHhhccceeeeeeeec---cCCce-EEecccc------hhhh-hcCCCCccchhhHHhhhhHhhhhh
Q 017048 209 SDVSEELRNKVFEAATNEGATLVNQWFVG---CGASY-VVCEEDS------VQKY-MGHSNNLVTPVWVLKTAKEKHVQR 277 (378)
Q Consensus 209 ~gfs~~~~~~L~~lI~~~GG~vv~~~~~~---~~vTH-VV~~~~s------~~~~-l~~~~~IVt~~WI~dcik~~~~qr 277 (378)
..+....++.|+++|+.+||++++..... .+.+| ||+.++. ++.+ ...+++||+++||+|||..+.++.
T Consensus 127 ~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~~~ 206 (229)
T 1l0b_A 127 EPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRD 206 (229)
T ss_dssp SCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHHHHHHHHTTSCCC
T ss_pred ecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHHHHHHhcCCcCC
Confidence 55655567889999999999999985221 23566 4544321 1222 246799999999999999998888
Q ss_pred HHhh
Q 017048 278 LVHI 281 (378)
Q Consensus 278 ~~~~ 281 (378)
.-.|
T Consensus 207 ~~~Y 210 (229)
T 1l0b_A 207 LDAY 210 (229)
T ss_dssp GGGG
T ss_pred ccce
Confidence 7666
No 4
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.93 E-value=4.5e-26 Score=208.54 Aligned_cols=189 Identities=17% Similarity=0.194 Sum_probs=142.1
Q ss_pred cceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeee------cCchhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 59 SGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF------GGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 59 ~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~------~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
++++|++||+++.++..|.+++..+||.+..+++..|||||+... .+.||..|+. .|++||+++||.||+
T Consensus 3 ~~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~----~g~~IV~~~Wl~~~~ 78 (214)
T 1t15_A 3 KRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIA----GGKWVVSYFWVTQSI 78 (214)
T ss_dssp -CCEEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHH----TTCEEEETHHHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHh----cCCEEeCHHHHHHHH
Confidence 589999999999999999999999999999999999999999875 4799999987 599999999999999
Q ss_pred hcccccccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccceeecchhh
Q 017048 133 RRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS 212 (378)
Q Consensus 133 ~~g~~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~~gfs 212 (378)
++|+++||++|.+........... -|.+..+ .....+|+|+.||+...+.
T Consensus 79 ~~~~~~~e~~y~~~~~~~~~~~~~---------------~~~~~r~---------------~~~~~lF~g~~~~~~~~~~ 128 (214)
T 1t15_A 79 KERKMLNEHDFEVRGDVVNGRNHQ---------------GPKRARE---------------SQDRKIFRGLEICCYGPFT 128 (214)
T ss_dssp HTTSCCCGGGGBCCEETTTBTTCC---------------HHHHHHT---------------CTTSCTTTTCEEEECSCCS
T ss_pred HCCCcCChHHeEeecccccccccc---------------chhhHhh---------------cCCCcccCCCEEEEEecCC
Confidence 999999999999875322110000 0000000 0125799999999965565
Q ss_pred HHHHHHHHHHHhhccceeeeeeeecc--CCce-E-Eecccc------hhhh-hcCCCCccchhhHHhhhhHhhhhhHHhh
Q 017048 213 EELRNKVFEAATNEGATLVNQWFVGC--GASY-V-VCEEDS------VQKY-MGHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (378)
Q Consensus 213 ~~~~~~L~~lI~~~GG~vv~~~~~~~--~vTH-V-V~~~~s------~~~~-l~~~~~IVt~~WI~dcik~~~~qr~~~~ 281 (378)
...++.|+++|+.+||++++...... ..+| + |+.++. .+.+ ...++++|+++||+||+..+.++..-.|
T Consensus 129 ~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~~l~~~~Y 208 (214)
T 1t15_A 129 NMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTY 208 (214)
T ss_dssp SSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTSCCCSGGG
T ss_pred CCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEeccHHHHhHhhcCcCCCcce
Confidence 55578899999999999998742111 1224 4 343321 1111 3467899999999999999998887666
No 5
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.93 E-value=9.4e-27 Score=213.59 Aligned_cols=179 Identities=18% Similarity=0.257 Sum_probs=140.3
Q ss_pred ceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEee---ecCchhhHhhhhcCCCceEEEEeehhhhhhhccc
Q 017048 60 GLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQS---FGGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNV 136 (378)
Q Consensus 60 g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~---~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~~g~ 136 (378)
+++|++||+++.++..|.+++..+||.+..++++.|||||+.. ..+.||..|+. .|++||+++||.||+++|+
T Consensus 2 ~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~----~g~~IV~~~Wl~~c~~~~~ 77 (210)
T 2nte_A 2 PLVLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGIL----NGCWILKFEWVKACLRRKV 77 (210)
T ss_dssp CCEEEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHH----TTCEEEETHHHHHHHHHTS
T ss_pred CEEEEECCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHh----cCCEEecHHHHHHHHHcCC
Confidence 6899999999999999999999999999999999999999977 57899999987 5999999999999999999
Q ss_pred ccccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccceeecchhhHHHH
Q 017048 137 RLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSEELR 216 (378)
Q Consensus 137 ~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~~gfs~~~~ 216 (378)
++||++|.+...+.. . +++.. .....+|+|+.||+...+....+
T Consensus 78 ~~~e~~y~~~~~~~~-------~---------------r~~~~--------------~~~~~lF~g~~~~l~~~~~~~~~ 121 (210)
T 2nte_A 78 CEQEEKYEIPEGPRR-------S---------------RLNRE--------------QLLPKLFDGCYFYLWGTFKHHPK 121 (210)
T ss_dssp CCCGGGTBCTTHHHH-------H---------------HHHHH--------------TTCCCTTTTCEEEECSCCSSSCH
T ss_pred cCChhhccCCCCChh-------h---------------hhccc--------------cccccccCceEEEEeccCCCCCH
Confidence 999999998642100 0 00000 01257999999999555665668
Q ss_pred HHHHHHHhhccceeeeeeee---------------------ccCCceEEecccchh----hhhcCCCCccchhhHHhhhh
Q 017048 217 NKVFEAATNEGATLVNQWFV---------------------GCGASYVVCEEDSVQ----KYMGHSNNLVTPVWVLKTAK 271 (378)
Q Consensus 217 ~~L~~lI~~~GG~vv~~~~~---------------------~~~vTHVV~~~~s~~----~~l~~~~~IVt~~WI~dcik 271 (378)
+.|+++|+.+||++++..+. ...+||.|+..+..+ .+...++.+|+++||+|||.
T Consensus 122 ~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~~~~~~~~~~v~~V~~~Wl~dcI~ 201 (210)
T 2nte_A 122 DNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNYHPERVRQGKVWKAPSSWFIDCVM 201 (210)
T ss_dssp HHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSSCCCSCSEETTEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccccCHHHHhccCcccccHHHHHHHHH
Confidence 88999999999999974321 134577777653221 12335668999999999999
Q ss_pred HhhhhhH
Q 017048 272 EKHVQRL 278 (378)
Q Consensus 272 ~~~~qr~ 278 (378)
.+.++++
T Consensus 202 ~~~llp~ 208 (210)
T 2nte_A 202 SFELLPL 208 (210)
T ss_dssp HTSCCCS
T ss_pred hCeeccC
Confidence 9887653
No 6
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.92 E-value=3.5e-26 Score=208.88 Aligned_cols=182 Identities=16% Similarity=0.205 Sum_probs=140.9
Q ss_pred ceEEEEcccCHHHHHHHHHHHHHhcC-ccCCCCCCccceEEEeee-cCchhhHhhhhcCCCceEEEEeehhhhhhhcccc
Q 017048 60 GLVICVTGLSKEARKQVMEATERLGG-QYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVR 137 (378)
Q Consensus 60 g~~I~vsG~~~~~r~~L~~lI~~~GG-~~~~~lt~~~THLI~~~~-~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~~g~~ 137 (378)
..+|++||++++++..|.++|..+|| .++.+++..|||||+... .+.||..|+. .|+|||+++||.+|+++|++
T Consensus 11 ~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~----~g~~Iv~~~Wv~~~~~~g~~ 86 (199)
T 3u3z_A 11 TRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIA----RGCWVLSYDWVLWSLELGHW 86 (199)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHH----TTCEEEETHHHHHHHHHTSC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHH----CCCcEEeHHHHHHHhhCCCC
Confidence 46899999999999999999999988 677899999999999875 7899999997 68999999999999999999
Q ss_pred cccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccc-eeecchhhHHHH
Q 017048 138 LSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCS-MYVDSDVSEELR 216 (378)
Q Consensus 138 l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~-fyl~~gfs~~~~ 216 (378)
+||++|.+........ ..++ +.. .........+|+|+. ||+ .++....+
T Consensus 87 l~e~~y~~~~~~~~~~----~~rl---------------~r~----------~~~~~~~~~LF~g~~~~~v-~~~~~~~~ 136 (199)
T 3u3z_A 87 ISEEPFELSHHFPAAP----LCRS---------------ECH----------LSAGPYRGTLFADQPVMFV-SPASSPPV 136 (199)
T ss_dssp CCSGGGBCTTTCTHHH----HHHH---------------HHH----------HCSSSCCCCTTTTSCCEEE-CTTCSSCH
T ss_pred CChhhccccCCccccc----cchh---------------hhh----------hhcccccchhhCCCeEEEE-CCCCCCCH
Confidence 9999999976432110 0000 000 000012358999995 666 55555557
Q ss_pred HHHHHHHhhccceeeeeeeeccCCceEEecccchhhhhcCCCCccchhhHHhhhhHhhhhhHHhh
Q 017048 217 NKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (378)
Q Consensus 217 ~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~~l~~~~~IVt~~WI~dcik~~~~qr~~~~ 281 (378)
+.|+++|+.+||+++... ..++++|++... + ...++.+|+|+||+|||.++.++++..|
T Consensus 137 ~~L~~lI~~~GG~v~~~~---~~~~iiI~~~~~-~--~~~~~~~V~p~Wi~DsI~~~~llp~~~Y 195 (199)
T 3u3z_A 137 AKLCELVHLCGGRVSQVP---RQASIVIGPYSG-K--KKATVKYLSEKWVLDSITQHKVCAPENY 195 (199)
T ss_dssp HHHHHHHHHTTCCBCSSG---GGCSEEESCCCS-C--CCTTCEEECHHHHHHHHHHTSCCCGGGG
T ss_pred HHHHHHHHHcCCEEeccC---CCCEEEEeCCch-h--ccCCCcEEChhHHHHHHHcCCcCChHhc
Confidence 889999999999999983 456777765322 1 2356789999999999999999888666
No 7
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.89 E-value=8.6e-24 Score=195.82 Aligned_cols=187 Identities=17% Similarity=0.266 Sum_probs=140.5
Q ss_pred CCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeee-cCchhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~-~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
+..|+.|++||+||+.+.++..+.++|..+||.+..+. .+|||||+... .+.||..|+. .|+|||+++||.+|+
T Consensus 10 ~~~~~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~----~g~~IVs~~Wl~~c~ 84 (219)
T 3sqd_A 10 KLTPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAIS----VVKHIVTPEWLEECF 84 (219)
T ss_dssp CCCGGGCCEEEECSCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTT----TCSEEECHHHHHHHH
T ss_pred ccCCCCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHH----cCCCEecHHHHHHHH
Confidence 57789999999999999999999999999999999886 89999999876 4569999987 689999999999999
Q ss_pred hcccccccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccceeecchhh
Q 017048 133 RRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS 212 (378)
Q Consensus 133 ~~g~~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~~gfs 212 (378)
++|+++||++|.+...... ..+++ .+...+... ....+|+|+.||+.+.+.
T Consensus 85 ~~~~~l~e~~y~l~d~~~e--------~~~~~------~l~~~l~ra---------------~~~~LF~G~~f~it~~~~ 135 (219)
T 3sqd_A 85 RCQKFIDEQNYILRDAEAE--------VLFSF------SLEESLKRA---------------HVSPLFKAKYFYITPGIC 135 (219)
T ss_dssp HHTSCCCSGGGBCCCHHHH--------HHTTC------CHHHHHHHH---------------HHSCTTTTEEEEECTTCS
T ss_pred HcCCCCChHhccCCCchhh--------hhcCC------ChHHHhhhh---------------ccccccCCcEEEEeCCCC
Confidence 9999999999998753210 00000 000000000 125799999999976665
Q ss_pred HHHHHHHHHHHhhccceeeeeeeec---------cC-CceEEec-cc---chhhhhcCCCCccchhhHHhhhhHhhh
Q 017048 213 EELRNKVFEAATNEGATLVNQWFVG---------CG-ASYVVCE-ED---SVQKYMGHSNNLVTPVWVLKTAKEKHV 275 (378)
Q Consensus 213 ~~~~~~L~~lI~~~GG~vv~~~~~~---------~~-vTHVV~~-~~---s~~~~l~~~~~IVt~~WI~dcik~~~~ 275 (378)
+. ++.|+++|+.+||+++...+.. .. ...+|+. +. ..+.+...++.|++++||++||-.+++
T Consensus 136 ~~-~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~~~~~~~v~s~E~il~~Il~q~l 211 (219)
T 3sqd_A 136 PS-LSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQTL 211 (219)
T ss_dssp SC-HHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHHHHTTCCCEETHHHHHHHHHTCC
T ss_pred CC-HHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHHHHHHHHHHCCCcEEeHHHHHHHHHheee
Confidence 44 6789999999999999885321 11 2334433 32 234456679999999999999987543
No 8
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.89 E-value=9.1e-25 Score=207.08 Aligned_cols=220 Identities=13% Similarity=0.105 Sum_probs=122.3
Q ss_pred CCCCccceEEEE-cccCH------HHHHHHHHHHHHhcCccCCCCCCc-----cceEEEeeecCchhhHhhhhcCCCceE
Q 017048 54 ANAPFSGLVICV-TGLSK------EARKQVMEATERLGGQYSPDLHPQ-----CTHLVVQSFGGRKFEHALKHGSRNGLY 121 (378)
Q Consensus 54 ~~~~F~g~~I~v-sG~~~------~~r~~L~~lI~~~GG~~~~~lt~~-----~THLI~~~~~~~Ky~~A~k~~~~~gi~ 121 (378)
..++|+|++||| +|..+ ..+++|+.+|..+||++..+.... +||+|+. ..+.|+..+.+ .+++
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~-~~t~k~~~~~~----~~~~ 76 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISC-KTTTECKALID----RGYD 76 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEEC-SCCGGGGGGTT----TTCC
T ss_pred ccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEec-CCcHHHHHHHh----CCCC
Confidence 467999999998 56532 378899999999999998765432 3677774 45778877765 4699
Q ss_pred EEEeehhhhhhhcccccccceeeeeccCccC-----cccccccccccccCCCccccccchhhhhh--hhccCCCcccccc
Q 017048 122 IVTLGWFVDSVRRNVRLSESLYTVKSIDEHG-----MHLDKLNRLVGFAGTENSCLPAGIYEAKQ--FNATGKHERDSNR 194 (378)
Q Consensus 122 IV~~~Wl~dci~~g~~l~e~~Y~~~~~~~~~-----~~~d~~~~l~~~s~~e~s~lp~~i~E~~~--s~~~e~~~~~~~~ 194 (378)
||+|+||.||+++++++|..+|.+....+.. ...|.+...+.. ......+..-+++... +....+.+.+...
T Consensus 77 vV~p~Wv~dci~~~~llp~~~y~~~~~~~~~~~~~~~~~d~~gdsy~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 155 (264)
T 1z56_C 77 ILHPNWVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFEN-DISETKLSSLYKSQLSLPPMGELEIDSEVRR 155 (264)
T ss_dssp CBCSSTTHHHHSSCSCCCCCSCBSCCCGGGTHHHHGGGBCSSSCBSSS-CCCHHHHHHTTSCCSCCCCCCCCSSCCSCCC
T ss_pred EEechHHHHHhhcCCCCCCChHHhhcCCHHHHHHHHHhccccCCcccc-CCCHHHHHHHHHhcccccchhhhhhhccccc
Confidence 9999999999999999999988664322111 111222111100 0000000000000000 0000011111123
Q ss_pred ccCccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccc---------hhhhhcC---------
Q 017048 195 SMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS---------VQKYMGH--------- 256 (378)
Q Consensus 195 ~~~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s---------~~~~l~~--------- 256 (378)
.+..+|+||+|||+........+.++.+|+++||++++. ++..+||||+..+. +++.+..
T Consensus 156 ~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~--l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQ--QSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIP 233 (264)
T ss_dssp CCCC--------------------CHHHHHHHTTSCCCC--SSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCC
T ss_pred CchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecc--cCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccC
Confidence 457899999999943233455667889999999999998 46666666664321 2222221
Q ss_pred C-CCccchhhHHhhhhHhhhhhHHhh
Q 017048 257 S-NNLVTPVWVLKTAKEKHVQRLVHI 281 (378)
Q Consensus 257 ~-~~IVt~~WI~dcik~~~~qr~~~~ 281 (378)
. ++||++.||.||+++|.+...-.|
T Consensus 234 ~~~~iV~~~Wv~dci~~~~ll~e~~Y 259 (264)
T 1z56_C 234 KIARVVAPEWVDHSINENCQVPEEDF 259 (264)
T ss_dssp CCCEEECTHHHHHHHTTSCCCSSCCC
T ss_pred CCCEEecHHHHHHHHHcCCcCCHHHc
Confidence 2 489999999999999988765544
No 9
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.88 E-value=5.9e-24 Score=195.29 Aligned_cols=184 Identities=21% Similarity=0.268 Sum_probs=130.3
Q ss_pred CCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeee-cCchhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~-~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
+.+...+++|++||+.+.+ ++++|..+||.+..+++ +|||||+... .+.||..|+. .|+|||+++||.+|+
T Consensus 6 ~~~~~~~~~v~~sG~~~~~---~~~~i~~lGg~~~~~~~-~~THlI~~~~~rt~K~l~a~~----~g~~IV~~~Wl~~~~ 77 (209)
T 2etx_A 6 LNQESTAPKVLFTGVVDAR---GERAVLALGGSLAGSAA-EASHLVTDRIRRTVKFLCALG----RGIPILSLDWLHQSR 77 (209)
T ss_dssp ------CCEEEECSSCCHH---HHHHHHHTTCEECSSTT-TCSEEECSSCCCSHHHHHHHH----HTCCEECTHHHHHHH
T ss_pred ccccCCCcEEEEeCCCcHH---HHHHHHHCCCEEeCCCC-CceEEEECCCCCCHHHHHHHh----cCCccccHHHHHHHH
Confidence 5677889999999998754 48899999999999997 5999999765 6899999997 589999999999999
Q ss_pred hcccccccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccceeecchhh
Q 017048 133 RRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS 212 (378)
Q Consensus 133 ~~g~~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~~gfs 212 (378)
++++++||++|.+.+.... ..+++ .+...+.. .....+|+|++||+.+.+.
T Consensus 78 ~~~~~l~e~~y~~~~~~~~--------~~~~~------~l~~~~~~---------------a~~~~lF~g~~~~~~~~~~ 128 (209)
T 2etx_A 78 KAGFFLPPDEYVVTDPEQE--------KNFGF------SLQDALSR---------------ARERRLLEGYEIYVTPGVQ 128 (209)
T ss_dssp HHTSCCCSGGGBCCCHHHH--------HHTTC------CHHHHHHH---------------HHHSCTTTTCEEEECTTCS
T ss_pred HcCCCCChhhccccChhhh--------hhcCC------CHHHHHhh---------------hhhCCCcCCcEEEEeCCCC
Confidence 9999999999998653110 00000 00000000 0114799999999965444
Q ss_pred HHHHHHHHHHHhhccceeeeeeeeccCCceEEecc-cc---hhhhhcCCCCccchhhHHhhhhHhhh
Q 017048 213 EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE-DS---VQKYMGHSNNLVTPVWVLKTAKEKHV 275 (378)
Q Consensus 213 ~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~-~s---~~~~l~~~~~IVt~~WI~dcik~~~~ 275 (378)
+ .++.|+++|+.+||+++...+....-+|+|+.. .. .+.+...++++|+++||++||..+.+
T Consensus 129 ~-~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~q~l 194 (209)
T 2etx_A 129 P-PPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQEA 194 (209)
T ss_dssp S-CHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHHHHHTCCEECTHHHHHHHHHTCC
T ss_pred C-CHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHHHHCCCeEEcHHHHHHHHHhccc
Confidence 3 357899999999999998742111125666643 22 22335678999999999999997654
No 10
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.88 E-value=5e-23 Score=195.25 Aligned_cols=188 Identities=17% Similarity=0.151 Sum_probs=139.0
Q ss_pred CCCCCccceEEEEcccCHH-----------------------------HHHHHHHHHHHhcCccCCCCCCc------cce
Q 017048 53 PANAPFSGLVICVTGLSKE-----------------------------ARKQVMEATERLGGQYSPDLHPQ------CTH 97 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~-----------------------------~r~~L~~lI~~~GG~~~~~lt~~------~TH 97 (378)
...++|.|+.|++|+.+.. .+.+|+++|+.+||.+.++++.. +||
T Consensus 11 ~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~ 90 (259)
T 1kzy_C 11 LNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCL 90 (259)
T ss_dssp SSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEE
T ss_pred CCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeE
Confidence 4678999999999998643 56799999999999999998854 789
Q ss_pred EEEee-ecCchhhHhhhhcCCCceEEEEeehhhhhhhcccccccceeeeeccCccCcccccccccccccCCCccccccch
Q 017048 98 LVVQS-FGGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGI 176 (378)
Q Consensus 98 LI~~~-~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~~g~~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i 176 (378)
||+.. ..+.||..|+. .|++||+++||.||+++++.+|+.+|.+........ .+...
T Consensus 91 LIa~~~~rt~K~l~ala----~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g~s~~~-----~~~~~------------- 148 (259)
T 1kzy_C 91 LIADQHCRTRKYFLCLA----SGIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSLEE-----QRILD------------- 148 (259)
T ss_dssp EEESSCCCSHHHHHHHH----HTCCEEETHHHHHHHHHTSCCCGGGSBCCCEEETTT-----TEEEC-------------
T ss_pred EEcCCCCCcHHHHHHHh----cCCCCccHHHHHHHHHcCCcCCHHHccCCCCccccc-----chhhh-------------
Confidence 99966 47889999987 599999999999999999999999999865211000 00000
Q ss_pred hhhhhhhccCCCccccccccCccccccceeecchhhHHHHHHHHHHHhhccceeeeeeee-------ccCCceEEecc-c
Q 017048 177 YEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFV-------GCGASYVVCEE-D 248 (378)
Q Consensus 177 ~E~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~-------~~~vTHVV~~~-~ 248 (378)
......+|+|++||+.....+...+.+..+++.+||+++..... ....+|||+.+ .
T Consensus 149 ----------------~~~~~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~ 212 (259)
T 1kzy_C 149 ----------------WQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPS 212 (259)
T ss_dssp ----------------CCCCCCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTT
T ss_pred ----------------ccccCCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCC
Confidence 01125799999999965554334567888999999999987420 11345555533 1
Q ss_pred ---chh-hhhcCCCCccchhhHHhhhhHhhhhhH
Q 017048 249 ---SVQ-KYMGHSNNLVTPVWVLKTAKEKHVQRL 278 (378)
Q Consensus 249 ---s~~-~~l~~~~~IVt~~WI~dcik~~~~qr~ 278 (378)
+.. .....+++||+.+||++||..|.++.+
T Consensus 213 ~~~~~~~~a~~~~i~iVs~EWv~~sI~~~~ll~~ 246 (259)
T 1kzy_C 213 CPASVLKCAEALQLPVVSQEWVIQCLIVGERIGF 246 (259)
T ss_dssp CCHHHHHHHHHHTCCEECHHHHHHHHHHTSCCCT
T ss_pred ChHHHHHHHHhcCCCEecHHHHHHHHHhCCcCCC
Confidence 111 224578999999999999999887654
No 11
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.87 E-value=6e-23 Score=170.71 Aligned_cols=91 Identities=30% Similarity=0.535 Sum_probs=86.2
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
.+.++|.||+||++||++.+|.+|+++|+.+||+|+..++++|||||+..+.+.||..|.+ ++++||+++||+||+
T Consensus 17 ~~~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~----~~i~IVs~eWl~dsi 92 (112)
T 3l46_A 17 QGVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPS----KKLYVVKQEWFWGSI 92 (112)
T ss_dssp -CCCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCC----SSCEEEEHHHHHHHH
T ss_pred cCCCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHH----CCeeEecHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999998886 699999999999999
Q ss_pred hcccccccceeeeec
Q 017048 133 RRNVRLSESLYTVKS 147 (378)
Q Consensus 133 ~~g~~l~e~~Y~~~~ 147 (378)
+.|.++||+.|.+..
T Consensus 93 ~~g~~ldE~~Y~~~~ 107 (112)
T 3l46_A 93 QMDARAGETMYLYEK 107 (112)
T ss_dssp HHTSCCCGGGSBCCC
T ss_pred HcCCccChhhceecc
Confidence 999999999999865
No 12
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.87 E-value=2.9e-22 Score=187.42 Aligned_cols=204 Identities=12% Similarity=0.147 Sum_probs=141.9
Q ss_pred CccceEEEEcccCHHHHHHHHHHHHHhcCccCC--CCCCccceEEEeee-cCchhhHhhhhcCCCceEEEEeehhhhhhh
Q 017048 57 PFSGLVICVTGLSKEARKQVMEATERLGGQYSP--DLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (378)
Q Consensus 57 ~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~--~lt~~~THLI~~~~-~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~ 133 (378)
.-++.+|++||++++++..+.++|..+||.+.. +++.+|||||+... .+.||..|+. .|+|||+++||.+|++
T Consensus 6 ~~~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia----~G~wIvs~~wl~~s~~ 81 (235)
T 3al2_A 6 LKKQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVA----AGKWVLHRSYLEACRT 81 (235)
T ss_dssp --CCCEEEEESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHH----TTCEEECTHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHH----cCCcCccHHHHHHHHH
Confidence 346889999999999999999999999999976 57899999999887 5899999997 6999999999999999
Q ss_pred cccccccceeeeeccCccCccccccccc-ccccCCCccccccchhh-hhhhhccCCCccccccccCccccccceeecchh
Q 017048 134 RNVRLSESLYTVKSIDEHGMHLDKLNRL-VGFAGTENSCLPAGIYE-AKQFNATGKHERDSNRSMNSTLSGCSMYVDSDV 211 (378)
Q Consensus 134 ~g~~l~e~~Y~~~~~~~~~~~~d~~~~l-~~~s~~e~s~lp~~i~E-~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~~gf 211 (378)
+|+++||++|++......... ..++.. ..+ ..-|.++.. ..... .......+|+|+.|||..+
T Consensus 82 ~g~~l~E~~ye~~~~~~~d~~-~~~~~~~~~l-----~~a~~r~R~~l~~~~--------~~g~~~~lF~g~~v~l~~~- 146 (235)
T 3al2_A 82 AGHFVQEEDYEWGSSSILDVL-TGINVQQRRL-----ALAAMRWRKKIQQRQ--------ESGIVEGAFSGWKVILHVD- 146 (235)
T ss_dssp HTSCCCSGGGBTTSHHHHTTC-TTSCHHHHHH-----HHHHHHHHHHHHHHH--------TTTCCSSTTTTCEEEEECC-
T ss_pred cCCCCChhceeecCcchhccc-cCCChhhhHH-----HHHHHHHHHHHHhcc--------cccccCCCCCCcEEEEecC-
Confidence 999999999999764211000 000000 000 000111100 00000 0000147999999999544
Q ss_pred hHHHHHHHHHHHhhccceeeeeee--eccCCceEEecccc---------hhhhhcCCCCccchhhHHhhhhHhhhhhHHh
Q 017048 212 SEELRNKVFEAATNEGATLVNQWF--VGCGASYVVCEEDS---------VQKYMGHSNNLVTPVWVLKTAKEKHVQRLVH 280 (378)
Q Consensus 212 s~~~~~~L~~lI~~~GG~vv~~~~--~~~~vTHVV~~~~s---------~~~~l~~~~~IVt~~WI~dcik~~~~qr~~~ 280 (378)
....+.++++|+++||+|+...+ ...+.||++++... +..+...++.+|+++||+|++-.+.+...-.
T Consensus 147 -~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewlld~i~~~~~~~~~~ 225 (235)
T 3al2_A 147 -QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPPHVEN 225 (235)
T ss_dssp -HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETHHHHHHHHCSSCCCHHH
T ss_pred -CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHHHHHHHHhcCCCCChhh
Confidence 34567899999999999997632 12457898876321 2223457899999999999998876655433
No 13
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.84 E-value=8.4e-22 Score=163.20 Aligned_cols=91 Identities=27% Similarity=0.519 Sum_probs=86.4
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
.+.++|+|++||++||++.+|..|+++|+.+||+|+..++++|||||+....+.||..|.+ ++++||+++||+||+
T Consensus 8 ~~~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~----~~i~IV~~~Wl~dsi 83 (109)
T 2cou_A 8 FKVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPS----KKLFVVKQEWFWGSI 83 (109)
T ss_dssp SCCCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCC----TTSEEECHHHHHHHH
T ss_pred ccCCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHH----CCCeEecHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999989999998887 689999999999999
Q ss_pred hcccccccceeeeec
Q 017048 133 RRNVRLSESLYTVKS 147 (378)
Q Consensus 133 ~~g~~l~e~~Y~~~~ 147 (378)
+.|+++||..|.+..
T Consensus 84 ~~g~~ldE~~Y~~~~ 98 (109)
T 2cou_A 84 QMDARAGETMYLYEK 98 (109)
T ss_dssp HTTSCCCGGGTBCCC
T ss_pred HcCCcCChhccCCCC
Confidence 999999999999876
No 14
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.83 E-value=5.9e-21 Score=179.17 Aligned_cols=195 Identities=15% Similarity=0.148 Sum_probs=135.1
Q ss_pred CCccceEEEEccc---CHHHHHHHHHHHHHhcCccCCC-----CC--C-------------------ccceEEEeee-cC
Q 017048 56 APFSGLVICVTGL---SKEARKQVMEATERLGGQYSPD-----LH--P-------------------QCTHLVVQSF-GG 105 (378)
Q Consensus 56 ~~F~g~~I~vsG~---~~~~r~~L~~lI~~~GG~~~~~-----lt--~-------------------~~THLI~~~~-~~ 105 (378)
.+|+|+.||++|. ++..+.+|+++|+.+||++..+ ++ . ..||||+... .+
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 4899999999998 4578999999999999999886 21 1 2499999765 48
Q ss_pred chhhHhhhhcCCCceEEEEeehhhhhhhcccccccceeeeeccCccCcccccccc-cccccCCCccccccchhhhhhhhc
Q 017048 106 RKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNR-LVGFAGTENSCLPAGIYEAKQFNA 184 (378)
Q Consensus 106 ~Ky~~A~k~~~~~gi~IV~~~Wl~dci~~g~~l~e~~Y~~~~~~~~~~~~d~~~~-l~~~s~~e~s~lp~~i~E~~~s~~ 184 (378)
.||..|+. +|++||+++||.||+++++.+|+.+|.+......... +..++ +..++. +. . +.+
T Consensus 81 ~K~~~ala----~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~~s~~~~-~~~~~~~~~~~~-~~-~----l~~------ 143 (241)
T 2vxb_A 81 VKYLEALA----FNIPCVHPQFIKQCLKMNRVVDFSPYLLASGYSHRLD-CTLSQRIEPFDT-TD-S----LYD------ 143 (241)
T ss_dssp HHHHHHHH----HTCCEECTHHHHHHHHHTSCCCSGGGBBEEEEETTTT-EEEECCCCCCCT-TS-C----HHH------
T ss_pred HHHHHHHH----cCCCEecHHHHHHHHHcCCcCChhhccCCCCcchhcc-chhhccccCCCh-hh-H----HHH------
Confidence 89999997 5999999999999999999999999998753221100 00000 000000 00 0 000
Q ss_pred cCCCccccccccCccccccceeecchhhH------------HHHHHHHHHHhhcccee--eeeeeeccCCceEEecccch
Q 017048 185 TGKHERDSNRSMNSTLSGCSMYVDSDVSE------------ELRNKVFEAATNEGATL--VNQWFVGCGASYVVCEEDSV 250 (378)
Q Consensus 185 ~e~~~~~~~~~~~~lF~G~~fyl~~gfs~------------~~~~~L~~lI~~~GG~v--v~~~~~~~~vTHVV~~~~s~ 250 (378)
.....+.+|.|++||+-.+... +..+.+..+++++||++ +.. .+...+|+|+..++.
T Consensus 144 -------~~~~~~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~--~~~~~~d~v~~~~~~ 214 (241)
T 2vxb_A 144 -------RLLARKGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPN--VAHLECDLILTMDGN 214 (241)
T ss_dssp -------HHHHCCCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSC--CSSCCCSEEECSSSC
T ss_pred -------HHhhcCcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccc--cccCCccEEEECCcc
Confidence 0012368999999998433211 12477888999999999 433 344567777764322
Q ss_pred hhhhcCCCCccchhhHHhhhhHhhhhh
Q 017048 251 QKYMGHSNNLVTPVWVLKTAKEKHVQR 277 (378)
Q Consensus 251 ~~~l~~~~~IVt~~WI~dcik~~~~qr 277 (378)
.....+++||+++||.+|+..|.++.
T Consensus 215 -~~~~~~~~iV~~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 215 -IVDETNCPVVDPEWIVECLISQSDIS 240 (241)
T ss_dssp -CCSSCSSCEECHHHHHHHHHHTSCTT
T ss_pred -ccccCCCCEecHHHHHHHHHhceecC
Confidence 12457899999999999999987653
No 15
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.78 E-value=6.9e-20 Score=150.86 Aligned_cols=91 Identities=24% Similarity=0.459 Sum_probs=81.8
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEee---ecCchhhHhhhhcCCCceEEEEeehhh
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQS---FGGRKFEHALKHGSRNGLYIVTLGWFV 129 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~---~~~~Ky~~A~k~~~~~gi~IV~~~Wl~ 129 (378)
...++|.|++||++|+.+.+|..|+++|+.+||+|..+++++|||||+.. ..+.||..|.+ +|++||+++||.
T Consensus 11 ~~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~----~gi~IV~~~Wl~ 86 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKE----RGVHIVSEHWLL 86 (107)
T ss_dssp ---CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHH----TTCEEECHHHHH
T ss_pred cccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHH----CCCeEecHHHHH
Confidence 46789999999999998889999999999999999999999999999943 35789999998 699999999999
Q ss_pred hhhhcccccccceeeeec
Q 017048 130 DSVRRNVRLSESLYTVKS 147 (378)
Q Consensus 130 dci~~g~~l~e~~Y~~~~ 147 (378)
||+++|+++||.+|.+..
T Consensus 87 ~c~~~~~~l~e~~Y~~~~ 104 (107)
T 3l3e_A 87 DCAQECKHLPESLYPHTY 104 (107)
T ss_dssp HHHHHTSCCCGGGCCTTC
T ss_pred HHHHhCCCCchhhCCCCC
Confidence 999999999999998754
No 16
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=153.01 Aligned_cols=93 Identities=25% Similarity=0.423 Sum_probs=87.0
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
+...+|.|++||+||+...+|.+|+++|+.+||+|..++++.||||||....+.||..|.+ ++++||+++||+||+
T Consensus 18 ~~~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~----~gi~IV~~~Wl~d~~ 93 (129)
T 2d8m_A 18 ELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLG----LGGRIVRKEWVLDCH 93 (129)
T ss_dssp HHTTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHH----HTCEEEETHHHHHHH
T ss_pred CccccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHH----CCCcEecHHHHHHHH
Confidence 3567899999999999988999999999999999999999999999999999999999998 599999999999999
Q ss_pred hcccccccceeeeeccC
Q 017048 133 RRNVRLSESLYTVKSID 149 (378)
Q Consensus 133 ~~g~~l~e~~Y~~~~~~ 149 (378)
++++++||..|.+....
T Consensus 94 ~~~~~l~e~~Y~l~~~~ 110 (129)
T 2d8m_A 94 RMRRRLPSQRYLMAGPG 110 (129)
T ss_dssp HTTSCCCGGGGBCSSSS
T ss_pred HhCCcCChHhcccCCCC
Confidence 99999999999987653
No 17
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.76 E-value=8.7e-20 Score=168.99 Aligned_cols=183 Identities=17% Similarity=0.306 Sum_probs=129.2
Q ss_pred CccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeee-cCchhhHhhhhcCCCceEEEEeehhhhhhhcc
Q 017048 57 PFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSVRRN 135 (378)
Q Consensus 57 ~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~-~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~~g 135 (378)
.-+++.|++||+.+.+ ..+++..+||.+..+++ +|||||+... .+.||..|+. .|+|||+++||.+|+++|
T Consensus 5 ~~~~~~v~fSG~~~~~---~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia----~g~~IVs~~Wl~~~~~~~ 76 (220)
T 3l41_A 5 ASKRVYITFTGYDKKP---SIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIP----YGPCVVTMDWINSCLKTH 76 (220)
T ss_dssp --CCEEEEECSCSSCC---CCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGG----GCCEEECHHHHHHHHHHT
T ss_pred ccceEEEEEeccCCCC---CcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCC----CCCeEEEhHHHHhhhhhh
Confidence 3457899999998754 38999999999999985 6999999876 6999999997 589999999999999999
Q ss_pred cccccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccceeecchh--hH
Q 017048 136 VRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDV--SE 213 (378)
Q Consensus 136 ~~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~fyl~~gf--s~ 213 (378)
+++||++|.+.+.... ..+++ .+...+.. .......+|+|+.||+.+.+ .+
T Consensus 77 ~~l~e~~y~l~d~~~e--------~~~~~------~l~~~~~r-------------ar~~~~~LF~G~~f~it~~~~~~p 129 (220)
T 3l41_A 77 EIVDEEPYLLNDPEKE--------LELGC------TLESALKR-------------ARAQGPSLLEDYVVYLTSKTVAPE 129 (220)
T ss_dssp SCCCSGGGBCCCHHHH--------HHHTS------CHHHHHHH-------------HHHHCSCTTTTSEEEEETTSSCGG
T ss_pred hccccCccccCCcHHH--------hhccc------cHHHHHHH-------------HHhcCchhhhheeEEEeccccCCC
Confidence 9999999998753110 00000 00000000 00112589999999997766 43
Q ss_pred HHHHHHHHHHhhccceeeeeeee---------ccCCceEEecccch---hhh---h--cCCCCccchhhHHhhhhHhhhh
Q 017048 214 ELRNKVFEAATNEGATLVNQWFV---------GCGASYVVCEEDSV---QKY---M--GHSNNLVTPVWVLKTAKEKHVQ 276 (378)
Q Consensus 214 ~~~~~L~~lI~~~GG~vv~~~~~---------~~~vTHVV~~~~s~---~~~---l--~~~~~IVt~~WI~dcik~~~~q 276 (378)
.++.|+.+|+.+||+++. .|. .++-.+||..+... ..| . ...+.||+++||+++|-.+++.
T Consensus 130 -~~~~l~~iI~~~GG~v~~-~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~i~~~e~ll~~il~q~l~ 207 (220)
T 3l41_A 130 -NVPAVISIVKSNGGVCST-LNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTIFLQNYDWLIKTVLRQEID 207 (220)
T ss_dssp -GHHHHHHHHHHTTCEEEE-ECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTEEEEEHHHHHHHHHHTCCC
T ss_pred -CCceEEEEEecCCcEech-hhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceEEEechhHHHHHHHHHHcC
Confidence 367899999999999998 210 01224555554322 222 1 1345699999999999876553
No 18
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=1.9e-19 Score=143.41 Aligned_cols=87 Identities=26% Similarity=0.367 Sum_probs=76.3
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCC--CccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhh
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH--PQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVD 130 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt--~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~d 130 (378)
+...+|+|++||++|+....+..|+++|+.+||++..+++ +.+||||+....+.|+..+ .+++||+|+||+|
T Consensus 3 ~~~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~------~~~~iV~~~Wi~d 76 (92)
T 4id3_A 3 QSSKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEF------ANYKVVSPDWIVD 76 (92)
T ss_dssp ---CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHT------TTSCEECTHHHHH
T ss_pred ccccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHc------CCCCEEcccHHHH
Confidence 5788999999999998766789999999999999999999 8999999988877775432 4899999999999
Q ss_pred hhhcccccccceeee
Q 017048 131 SVRRNVRLSESLYTV 145 (378)
Q Consensus 131 ci~~g~~l~e~~Y~~ 145 (378)
|+++|+++||++|.+
T Consensus 77 ci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 77 SVKEARLLPWQNYSL 91 (92)
T ss_dssp HHHHTSCCCGGGGBC
T ss_pred HHHcCCcCChhhccc
Confidence 999999999999986
No 19
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.73 E-value=6.7e-19 Score=142.09 Aligned_cols=87 Identities=23% Similarity=0.410 Sum_probs=79.4
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCC-CccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhh
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH-PQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt-~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dc 131 (378)
+..++|+|++||++|+...++..|+++|..+||+|..+++ ..+||||+....+.|+..+. +++||+|+||+||
T Consensus 8 ~~~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~------~~~iV~p~Wl~dc 81 (97)
T 2ebw_A 8 TSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK------GEKVIRPEWIVES 81 (97)
T ss_dssp CCCCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS------SSCCBCTHHHHHH
T ss_pred CCCCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc------CCCEeChHHHHHH
Confidence 5678999999999999877799999999999999999887 68999999988888887643 7999999999999
Q ss_pred hhcccccccceeee
Q 017048 132 VRRNVRLSESLYTV 145 (378)
Q Consensus 132 i~~g~~l~e~~Y~~ 145 (378)
+++|+++|+++|.+
T Consensus 82 i~~~~~l~~~~Y~l 95 (97)
T 2ebw_A 82 IKAGRLLSYIPYQL 95 (97)
T ss_dssp HHHTSCCCSGGGBS
T ss_pred HHcCCccCchHcEe
Confidence 99999999999986
No 20
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.72 E-value=1.8e-18 Score=167.07 Aligned_cols=133 Identities=31% Similarity=0.424 Sum_probs=104.6
Q ss_pred ccccccccccCCc---c-----hhhccccccccccCCcccccc------CCCcccCCCCCccceEEEEcccCHHHHHHHH
Q 017048 12 SKGCSRLFLGSVP---S-----LRRLRGGVQSFESMSPASSSL------ASDSVLPANAPFSGLVICVTGLSKEARKQVM 77 (378)
Q Consensus 12 ~~~~~~~~~~~~~---~-----~r~~~~~~q~~~~~~~~~s~~------~~~~~~~~~~~F~g~~I~vsG~~~~~r~~L~ 77 (378)
+..+++|++++.. | ..+.....+|+.........+ .......+.++|+|++||+||+.+.+|.+|+
T Consensus 140 t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~~~~~~~~~~~~~~~~~~~~~~~f~g~~i~~tG~~~~~r~~l~ 219 (298)
T 3olc_X 140 NVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRYTDINMEDFKCPIFLGCIICVTGLCGLDRKEVQ 219 (298)
T ss_dssp CTTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHHHHHHHHTTCCSSGGGSCGGGGBCCTTTTCEEEECSCCHHHHHHHH
T ss_pred CCCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHHHHHcCCcCCcccccccccccccccccCCeEEEEeCCCCccHHHHH
Confidence 5689999876431 1 234445566666422111000 0001225788999999999999999999999
Q ss_pred HHHHHhcCccCCCCC-CccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhhhcccccccceeeeecc
Q 017048 78 EATERLGGQYSPDLH-PQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSI 148 (378)
Q Consensus 78 ~lI~~~GG~~~~~lt-~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~~g~~l~e~~Y~~~~~ 148 (378)
++|+.+||+|+.+++ ++|||||+..+.+.||..|.+ +|++||+++||+||+++|+++||+.|.+...
T Consensus 220 ~li~~~GG~~~~~ls~~~~THLI~~~~~g~K~~~A~~----~gi~IV~~~Wl~dsi~~g~~lde~~Y~l~~~ 287 (298)
T 3olc_X 220 QLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAKR----WNVHCVTTQWFFDSIEKGFCQDESIYKTEPR 287 (298)
T ss_dssp HHHHHTTCEECSSCCTTTCCEEECSSSCSHHHHHHHH----TTCEEECHHHHHHHHHHTSCCCGGGSBSCC-
T ss_pred HHHHHcCCEEeceecCCCceEEEEeCCCchHHHHHHH----CCCeEEeHHHHHHHHHCCCCCCchhcCCCCC
Confidence 999999999999999 899999999999999999987 5899999999999999999999999998764
No 21
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.65 E-value=6.1e-17 Score=133.45 Aligned_cols=92 Identities=20% Similarity=0.313 Sum_probs=81.6
Q ss_pred CCCccceEEEEcccCH----HHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhh
Q 017048 55 NAPFSGLVICVTGLSK----EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVD 130 (378)
Q Consensus 55 ~~~F~g~~I~vsG~~~----~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~d 130 (378)
.++|+|++++|.+... .....+..++..+||++...+++.+||||+.+..+.||+.|.+ ++++||+++||.|
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~----~~i~iV~~~Wv~~ 80 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQK----RGVKLVSVLWVEK 80 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHH----HTCEEECHHHHHH
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhc----CCCEEECHHHHHH
Confidence 5699999999988752 1346799999999999999999999999999888889999988 4899999999999
Q ss_pred hhhcccccccceeeeeccCc
Q 017048 131 SVRRNVRLSESLYTVKSIDE 150 (378)
Q Consensus 131 ci~~g~~l~e~~Y~~~~~~~ 150 (378)
|+++|+++||+.|.+..+.+
T Consensus 81 C~~~~~~vdE~~Y~i~~~~~ 100 (107)
T 3pa6_A 81 CRTAGAHIDESLFPAANMNE 100 (107)
T ss_dssp HHHHTSCCCGGGSBCCCTTT
T ss_pred HHHhCccCChhcccCCCCcc
Confidence 99999999999999876543
No 22
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.60 E-value=9.5e-16 Score=130.82 Aligned_cols=93 Identities=18% Similarity=0.312 Sum_probs=78.8
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
.+..+|+||+|+++|+....+..|..+|..+||++...++..+||||+.++ ..++..+... ...+++||+++||+||+
T Consensus 36 ~~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~-~~~~~~~~~~-~~~~~~iV~~~Wv~dsi 113 (132)
T 1wf6_A 36 APEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDY-DDELKQFWNK-SAHRPHVVGAKWLLECF 113 (132)
T ss_dssp CCTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSC-CSHHHHHHHH-SCCCCCEEEHHHHHHHH
T ss_pred ccccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCc-hHHHHHHHHh-hCCCCeEechHHHHHHH
Confidence 356899999999999998999999999999999999999999999999764 3344444321 12478999999999999
Q ss_pred hcccccccceeeeec
Q 017048 133 RRNVRLSESLYTVKS 147 (378)
Q Consensus 133 ~~g~~l~e~~Y~~~~ 147 (378)
++|+++||..|.+..
T Consensus 114 ~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 114 SKGYMLSEEPYIHSG 128 (132)
T ss_dssp HHSSCCCSGGGBCCC
T ss_pred HcCCcCCHhhccCCC
Confidence 999999999998754
No 23
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.59 E-value=1.2e-15 Score=124.91 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=83.8
Q ss_pred CCCCccceEEEEcccC-HHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 54 ANAPFSGLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~-~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
-+.+|.|++|+++|.. +.++..|+++|..+||.+..+++.++||+|+..+.+.+++.|.+. ..++.+|+|+||++|+
T Consensus 4 Lpd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~--~p~~~~V~P~WI~~Ci 81 (104)
T 3pc6_A 4 LPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALME--NPSLAFVRPRWIYSCN 81 (104)
T ss_dssp CCCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTT--CTTCEEECHHHHHHHH
T ss_pred cchhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhh--CCCCeEEccHHHHHHH
Confidence 4679999999999987 689999999999999999999999999999998888899887752 3589999999999999
Q ss_pred hcccccccceeeeec
Q 017048 133 RRNVRLSESLYTVKS 147 (378)
Q Consensus 133 ~~g~~l~e~~Y~~~~ 147 (378)
++++++|+.+|.+..
T Consensus 82 ~~~klvp~~~y~~~~ 96 (104)
T 3pc6_A 82 EKQKLLPHQLYGVVP 96 (104)
T ss_dssp HHTSCCCGGGGBCCC
T ss_pred hcCccCCcccceecc
Confidence 999999999999865
No 24
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=99.53 E-value=2.1e-15 Score=151.95 Aligned_cols=89 Identities=21% Similarity=0.360 Sum_probs=82.3
Q ss_pred CCCCccceEEEEcccCH----HHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhh
Q 017048 54 ANAPFSGLVICVTGLSK----EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFV 129 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~----~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~ 129 (378)
+.++|.||+|||||+.+ .++..|..+++.+||+|+..++++||||||+...+.||..|.+++ +|+||+++||+
T Consensus 349 k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g---~IkIVs~~WL~ 425 (442)
T 3ef1_A 349 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMG---NIKVVKLNWLT 425 (442)
T ss_dssp HHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHS---SSEEEEHHHHH
T ss_pred hhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcC---CCEEEeHHHHH
Confidence 56799999999999864 257899999999999999999999999999999999999999852 69999999999
Q ss_pred hhhhcccccccceeee
Q 017048 130 DSVRRNVRLSESLYTV 145 (378)
Q Consensus 130 dci~~g~~l~e~~Y~~ 145 (378)
+|++.|+++||..|.+
T Consensus 426 dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 426 ESLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHHTSCCCGGGTBC
T ss_pred HHHHcCCcCChhcccc
Confidence 9999999999999975
No 25
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.51 E-value=3.6e-15 Score=147.95 Aligned_cols=89 Identities=20% Similarity=0.337 Sum_probs=81.7
Q ss_pred CCCCccceEEEEcccCH----HHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhh
Q 017048 54 ANAPFSGLVICVTGLSK----EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFV 129 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~----~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~ 129 (378)
..++|.||+||+||+.+ .++..+.+++..+||+++.+++++||||||+...+.||..|.++ .||+||+++||+
T Consensus 279 k~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~---~~I~IV~~~Wl~ 355 (372)
T 3ef0_A 279 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSM---GNIKVVKLNWLT 355 (372)
T ss_dssp HTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHS---SSCCEEEHHHHH
T ss_pred HhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhc---CCCEEEcHHHHH
Confidence 35799999999999963 35689999999999999999999999999999999999999984 389999999999
Q ss_pred hhhhcccccccceeee
Q 017048 130 DSVRRNVRLSESLYTV 145 (378)
Q Consensus 130 dci~~g~~l~e~~Y~~ 145 (378)
+|++.|+++||+.|.+
T Consensus 356 ~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 356 ESLSQWKRLPESDYLL 371 (372)
T ss_dssp HHHHTTSCCCGGGGBC
T ss_pred HHHHhCCcCChhhcee
Confidence 9999999999999975
No 26
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=3.2e-14 Score=117.43 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=73.7
Q ss_pred cCccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccchhhh---hcCCCCccchhhHHhhhhH
Q 017048 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY---MGHSNNLVTPVWVLKTAKE 272 (378)
Q Consensus 196 ~~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~~---l~~~~~IVt~~WI~dcik~ 272 (378)
+..+|+||+||+ .||++.++..|.++|+.+||++... ++..+||||+.....++| ...+++||+++||+||++.
T Consensus 9 ~~~~F~g~~i~~-sg~~~~~r~~l~~~i~~~GG~~~~~--~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~ 85 (109)
T 2cou_A 9 KVPPFQDCILSF-LGFSDEEKHSMEEMTEMQGGSYLPV--GDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQM 85 (109)
T ss_dssp CCCTTTTCBEEE-ESSCHHHHHHHHHHHHHHTCBCCCT--TCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHT
T ss_pred cCCcCCCeEEEe-cCCCHHHHHHHHHHHHHcCCEEecc--cCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHHc
Confidence 457899999999 7999999999999999999999987 699999999987555544 4678999999999999999
Q ss_pred hhhhhHHhhh
Q 017048 273 KHVQRLVHIS 282 (378)
Q Consensus 273 ~~~qr~~~~s 282 (378)
+..++.-.|.
T Consensus 86 g~~ldE~~Y~ 95 (109)
T 2cou_A 86 DARAGETMYL 95 (109)
T ss_dssp TSCCCGGGTB
T ss_pred CCcCChhccC
Confidence 9988876663
No 27
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.45 E-value=4.4e-14 Score=117.16 Aligned_cols=84 Identities=13% Similarity=0.134 Sum_probs=73.9
Q ss_pred cCccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccchhhh---hcCCCCccchhhHHhhhhH
Q 017048 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY---MGHSNNLVTPVWVLKTAKE 272 (378)
Q Consensus 196 ~~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~~---l~~~~~IVt~~WI~dcik~ 272 (378)
+...|+||+|++ .||++.++..|+++|+.+||++... ++..|||||+...+.++| ..++++||+++||+||++.
T Consensus 18 ~~p~F~g~~Ic~-sGf~~~er~~l~~~i~~~GG~~~~~--l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~~ 94 (112)
T 3l46_A 18 GVPPFQDCILSF-LGFSDEEKTNMEEMTEMQGGKYLPL--GDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQM 94 (112)
T ss_dssp CCCTTTTCEECE-ESCCHHHHHHHHHHHHHTTCEECCT--TCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHHHH
T ss_pred CCCccCCeEEEE-eCCCHHHHHHHHHHHHHcCCEECcc--cCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHHHc
Confidence 357899999999 8999999999999999999999998 699999999998665555 4689999999999999999
Q ss_pred hhhhhHHhhh
Q 017048 273 KHVQRLVHIS 282 (378)
Q Consensus 273 ~~~qr~~~~s 282 (378)
|..++.-.|.
T Consensus 95 g~~ldE~~Y~ 104 (112)
T 3l46_A 95 DARAGETMYL 104 (112)
T ss_dssp TSCCCGGGSB
T ss_pred CCccChhhce
Confidence 9887765553
No 28
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.43 E-value=1.1e-13 Score=117.87 Aligned_cols=85 Identities=18% Similarity=0.343 Sum_probs=71.7
Q ss_pred cccCccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecc--cchhhhh---cCCCCccchhhHHh
Q 017048 194 RSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE--DSVQKYM---GHSNNLVTPVWVLK 268 (378)
Q Consensus 194 ~~~~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~--~s~~~~l---~~~~~IVt~~WI~d 268 (378)
+.+..+|+||+||| .|+....+..|.++|+.+||++++. ++..+||||+.. ..+++++ ...++||+++||+|
T Consensus 35 ~~~~~lF~g~~i~i-~G~~~~~~~~L~~~i~~~Gg~v~~~--l~~~vTHvI~~~~~~~~~~~~~~~~~~~~iV~~~Wv~d 111 (132)
T 1wf6_A 35 QAPEDLLDGCRIYL-CGFSGRKLDKLRRLINSGGGVRFNQ--LNEDVTHVIVGDYDDELKQFWNKSAHRPHVVGAKWLLE 111 (132)
T ss_dssp CCCTTTTTTCEEEE-ESCCSHHHHHHHHHHHHTTCEEESS--CCSSCCEEEESSCCSHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred cccccccCCEEEEE-ECCChHHHHHHHHHHHHCCCEEeCc--CCCCCeEEEECCchHHHHHHHHhhCCCCeEechHHHHH
Confidence 44578999999999 6887788899999999999999998 589999999975 3344442 35789999999999
Q ss_pred hhhHhhhhhHHhh
Q 017048 269 TAKEKHVQRLVHI 281 (378)
Q Consensus 269 cik~~~~qr~~~~ 281 (378)
|++++.+.+.-.|
T Consensus 112 si~~~~ll~e~~Y 124 (132)
T 1wf6_A 112 CFSKGYMLSEEPY 124 (132)
T ss_dssp HHHHSSCCCSGGG
T ss_pred HHHcCCcCCHhhc
Confidence 9999998877666
No 29
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=6.3e-14 Score=111.18 Aligned_cols=83 Identities=16% Similarity=0.315 Sum_probs=67.6
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeec--cCCceEEecccchhhh-hcCCCCccchhhHHhhhhHh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVG--CGASYVVCEEDSVQKY-MGHSNNLVTPVWVLKTAKEK 273 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~--~~vTHVV~~~~s~~~~-l~~~~~IVt~~WI~dcik~~ 273 (378)
..+|+|++||+ .|+..+.+..|+++|+.+||++.+. ++ ..+||||+......++ ...+++||+++||+||++++
T Consensus 5 ~~~f~g~~~~i-~g~~~~~~~~l~~~i~~~GG~~~~~--~~~~~~~THlI~~~~~~~K~~~~~~~~iV~~~Wi~dci~~~ 81 (92)
T 4id3_A 5 SKIFKNCVIYI-NGYTKPGRLQLHEMIVLHGGKFLHY--LSSKKTVTHIVASNLPLKKRIEFANYKVVSPDWIVDSVKEA 81 (92)
T ss_dssp -CTTTTCEEEE-CSCCSSCHHHHHHHHHHTTCEEESS--CCCTTTCCEEECSCCCHHHHHHTTTSCEECTHHHHHHHHHT
T ss_pred ccccCCEEEEE-eCCCCcCHHHHHHHHHHCCCEEEEE--ecCCCceEEEEecCCCHHHHHHcCCCCEEcccHHHHHHHcC
Confidence 57999999999 6655455788999999999999998 46 7999999987544343 23689999999999999999
Q ss_pred hhhhHHhhh
Q 017048 274 HVQRLVHIS 282 (378)
Q Consensus 274 ~~qr~~~~s 282 (378)
.+++.-.|.
T Consensus 82 ~~l~e~~Y~ 90 (92)
T 4id3_A 82 RLLPWQNYS 90 (92)
T ss_dssp SCCCGGGGB
T ss_pred CcCChhhcc
Confidence 888776653
No 30
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.37 E-value=3e-13 Score=108.73 Aligned_cols=84 Identities=11% Similarity=0.246 Sum_probs=67.1
Q ss_pred cCccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccchhhh-hcCCCCccchhhHHhhhhHhh
Q 017048 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY-MGHSNNLVTPVWVLKTAKEKH 274 (378)
Q Consensus 196 ~~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~~-l~~~~~IVt~~WI~dcik~~~ 274 (378)
...+|+|+.||+ .|+....++.|+++|+.+||++...+ ....+||+|+......++ ...+++||+|+||.||++++.
T Consensus 9 ~~~lF~g~~~~i-sg~~~~~~~~L~~~i~~~GG~~~~~~-~~~~~THlI~~~~~~~k~~~~~~~~iV~p~Wl~dci~~~~ 86 (97)
T 2ebw_A 9 SSTIFSGVAIYV-NGYTDPSAEELRKLMMLHGGQYHVYY-SRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVESIKAGR 86 (97)
T ss_dssp CCCTTTTCEEEE-CSSCSSCHHHHHHHHHHTTCEECSSC-CSSSCCEEECSCCCTTHHHHTSSSCCBCTHHHHHHHHHTS
T ss_pred CCCCCCCeEEEE-eCCCcccHHHHHHHHHHcCCEEeeec-CCCCCEEEEecCCChHHHHHhcCCCEeChHHHHHHHHcCC
Confidence 367999999999 67765668899999999999988763 237899999997543333 123889999999999999998
Q ss_pred hhhHHhh
Q 017048 275 VQRLVHI 281 (378)
Q Consensus 275 ~qr~~~~ 281 (378)
+++.-.|
T Consensus 87 ~l~~~~Y 93 (97)
T 2ebw_A 87 LLSYIPY 93 (97)
T ss_dssp CCCSGGG
T ss_pred ccCchHc
Confidence 8776555
No 31
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.28 E-value=2.3e-12 Score=105.43 Aligned_cols=83 Identities=11% Similarity=0.258 Sum_probs=66.5
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc---chhhhh--cCCCCccchhhHHhhhh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYM--GHSNNLVTPVWVLKTAK 271 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~---s~~~~l--~~~~~IVt~~WI~dcik 271 (378)
.++|+|+.|||+..++..+++.|.++|.+.||++.+. .++++||||++.. +++... ..+..+|+|.||++|++
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~--~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~ 82 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDY--MNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNE 82 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSS--CCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHH
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcc--cCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHh
Confidence 5799999999965564567889999999999998887 6899999999873 333323 24678999999999999
Q ss_pred HhhhhhHHhh
Q 017048 272 EKHVQRLVHI 281 (378)
Q Consensus 272 ~~~~qr~~~~ 281 (378)
++++...-.|
T Consensus 83 ~~klvp~~~y 92 (104)
T 3pc6_A 83 KQKLLPHQLY 92 (104)
T ss_dssp HTSCCCGGGG
T ss_pred cCccCCcccc
Confidence 9887655443
No 32
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.27 E-value=2.2e-12 Score=105.72 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=68.8
Q ss_pred cCccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc------chhhhhcCCCCccchhhHHhh
Q 017048 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------SVQKYMGHSNNLVTPVWVLKT 269 (378)
Q Consensus 196 ~~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~------s~~~~l~~~~~IVt~~WI~dc 269 (378)
...+|+|++|+| .|+.+..+..|+++|+.+||++... ++.++||||+..+ .+++....+++||+++||.||
T Consensus 12 ~~~~l~g~~i~i-sg~~~~~r~~l~~li~~~Gg~v~~~--~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c 88 (107)
T 3l3e_A 12 APKPLHKVVVCV-SKKLSKKQSELNGIAASLGADYRRS--FDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDC 88 (107)
T ss_dssp --CTTTTCEEEE-CGGGGGGHHHHHHHHHHTTCEEESS--CCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHH
T ss_pred ccCCCCCeEEEE-eCCChHhHHHHHHHHHHcCCEEecc--ccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHH
Confidence 357899999999 5665567889999999999999998 6899999999531 222334579999999999999
Q ss_pred hhHhhhhhHHhhhH
Q 017048 270 AKEKHVQRLVHISA 283 (378)
Q Consensus 270 ik~~~~qr~~~~s~ 283 (378)
++.+.+++.-.|+.
T Consensus 89 ~~~~~~l~e~~Y~~ 102 (107)
T 3l3e_A 89 AQECKHLPESLYPH 102 (107)
T ss_dssp HHHTSCCCGGGCCT
T ss_pred HHhCCCCchhhCCC
Confidence 99998888777653
No 33
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=99.24 E-value=2.4e-12 Score=103.07 Aligned_cols=76 Identities=24% Similarity=0.303 Sum_probs=70.5
Q ss_pred CCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhhh
Q 017048 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~ 133 (378)
+.++|.|.+|||||..+..|.+++++|+.+||+++.+++.++||||++...+.|+++|.+ +||+||+.+|+.+++.
T Consensus 4 ~~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~----lgI~Ii~E~~f~~~l~ 79 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARA----LGVPTLTEEELYRLLE 79 (92)
T ss_dssp CCCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHC----SSSCCEEHHHHHHHHH
T ss_pred CCCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHH----cCCcEEeHHHHHHHHH
Confidence 456799999999998655999999999999999999999999999999999999999997 6999999999999986
No 34
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=8.8e-12 Score=105.70 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=69.5
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccchhhh---hcCCCCccchhhHHhhhhHh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY---MGHSNNLVTPVWVLKTAKEK 273 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~~---l~~~~~IVt~~WI~dcik~~ 273 (378)
..+|+|++|+| .|+....++.|+++|+.+||++... ++.++||||+......+| ...+++||+++||+||++.+
T Consensus 20 ~~~f~g~~i~i-tG~~~~~r~~l~~~i~~~Gg~v~~~--~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~~ 96 (129)
T 2d8m_A 20 GKILQGVVVVL-SGFQNPFRSELRDKALELGAKYRPD--WTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMR 96 (129)
T ss_dssp TTTSTTEEEEE-ESCCTTHHHHHHHHHHHTTEEEESS--CCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHTT
T ss_pred cccCCCeEEEE-eCCCcHHHHHHHHHHHHcCCEEeCC--cCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHhC
Confidence 56899999999 6776667899999999999999998 688999999987433333 45799999999999999999
Q ss_pred hhhhHHhh
Q 017048 274 HVQRLVHI 281 (378)
Q Consensus 274 ~~qr~~~~ 281 (378)
.+++.-.|
T Consensus 97 ~~l~e~~Y 104 (129)
T 2d8m_A 97 RRLPSQRY 104 (129)
T ss_dssp SCCCGGGG
T ss_pred CcCChHhc
Confidence 88776555
No 35
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=99.16 E-value=1.3e-11 Score=101.72 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=71.3
Q ss_pred CCCCCccceEEEEcccCH-HHHHHHHHHHHHhcCccCCCCCCccceEEEeeecC-chhhHhhhhcCCCceEEEEeehhhh
Q 017048 53 PANAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWFVD 130 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~-~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~-~Ky~~A~k~~~~~gi~IV~~~Wl~d 130 (378)
....+|.|.+|||||..+ -.|.+++++|+.+||+++..++.+|+|||++...+ .|+.+|.+ +||+||+.+||.+
T Consensus 28 ~~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~----lgI~Ii~E~~f~~ 103 (109)
T 2k6g_A 28 GAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAA----LGTKIIDEDGLLN 103 (109)
T ss_dssp CCTTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHH----HTCEEECHHHHHH
T ss_pred CCCCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHH----cCCeEEeHHHHHH
Confidence 456689999999999874 58999999999999999999999999999998877 89999998 5999999999999
Q ss_pred hhhcc
Q 017048 131 SVRRN 135 (378)
Q Consensus 131 ci~~g 135 (378)
.+..+
T Consensus 104 ll~~~ 108 (109)
T 2k6g_A 104 LIRNL 108 (109)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 98654
No 36
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=99.14 E-value=2.7e-11 Score=95.81 Aligned_cols=73 Identities=14% Similarity=0.293 Sum_probs=60.0
Q ss_pred cCccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccchhhhhcCCCCccchhhHHhhhhHhhh
Q 017048 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHV 275 (378)
Q Consensus 196 ~~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~~l~~~~~IVt~~WI~dcik~~~~ 275 (378)
...+|+|++|||..+++.. +.|.++|.++||++++.. ..+++||||.+.+ ...+..+|+|+||+|||++|.+
T Consensus 13 LpdiFsg~~~~l~~~v~~~--~~l~RyiiAfgG~v~~~~-~~~~vTHvI~~~~-----~~~~~~~V~p~WI~dcI~k~~L 84 (88)
T 3pc7_A 13 LLDIFTGVRLYLPPSTPDF--SRLRRYFVAFDGDLVQEF-DMTSATHVLGSRD-----KNPAAQQVSPEWIWACIRKRRL 84 (88)
T ss_dssp CCCCSTTCEECCCTTSTTH--HHHHHHHHHTTCEECCGG-GGGGCSEEESCCT-----TCTTSEEECHHHHHHHHHHTSC
T ss_pred CChhhcCeEEEccCCcCch--hhheeeeeecCCEEeccc-CCCcCeEEecCCC-----cCCCCcEEchHHHHHHHhCCcc
Confidence 3789999999997777643 679999999999998863 3469999998764 2346678999999999999876
Q ss_pred h
Q 017048 276 Q 276 (378)
Q Consensus 276 q 276 (378)
.
T Consensus 85 l 85 (88)
T 3pc7_A 85 V 85 (88)
T ss_dssp C
T ss_pred c
Confidence 4
No 37
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.7e-11 Score=99.63 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=65.9
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCC-----------CCCccceEEEeeecCchhhHhhhhcCCCceE
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPD-----------LHPQCTHLVVQSFGGRKFEHALKHGSRNGLY 121 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~-----------lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~ 121 (378)
....+|+|++|++++-. .+..|+.+|..+||.+..+ .+...||+|+..+...+ + ..+..
T Consensus 8 ~~~~LF~g~~F~i~~e~--p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~-----~---~~~r~ 77 (100)
T 2ep8_A 8 KHKKLFEGLKFFLNREV--PREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT-----S---VIGRC 77 (100)
T ss_dssp CSCCTTSSCEEECCSSS--CHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC-----C---BTTBE
T ss_pred chHHHcCCcEEEEecCC--CHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh-----h---cCCCe
Confidence 35789999999997643 4667889999999998875 24689999997653322 1 13678
Q ss_pred EEEeehhhhhhhcccccccceee
Q 017048 122 IVTLGWFVDSVRRNVRLSESLYT 144 (378)
Q Consensus 122 IV~~~Wl~dci~~g~~l~e~~Y~ 144 (378)
+|.|+||+||+.++++||+.+|.
T Consensus 78 ~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 78 YVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp EECTHHHHHHHHHTSCCCTTTCC
T ss_pred EEcchHHHHHHhcCCcCChhhcC
Confidence 99999999999999999999884
No 38
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.5e-11 Score=97.70 Aligned_cols=82 Identities=11% Similarity=0.203 Sum_probs=62.4
Q ss_pred cCccccccceeecchhhHHHHHHHHHHHhhccceeeeee---------eeccCCceEEecccchhhhhcCCCCccchhhH
Q 017048 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQW---------FVGCGASYVVCEEDSVQKYMGHSNNLVTPVWV 266 (378)
Q Consensus 196 ~~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~---------~~~~~vTHVV~~~~s~~~~l~~~~~IVt~~WI 266 (378)
...+|+|++||++...+ ++.|+.+|+++||+++... ..+..+||+|++.....+ ...+..+|+|+||
T Consensus 9 ~~~LF~g~~F~i~~e~p---~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~-~~~~r~~VqPqWV 84 (100)
T 2ep8_A 9 HKKLFEGLKFFLNREVP---REALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT-SVIGRCYVQPQWV 84 (100)
T ss_dssp SCCTTSSCEEECCSSSC---HHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC-CBTTBEEECTHHH
T ss_pred hHHHcCCcEEEEecCCC---HHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh-hcCCCeEEcchHH
Confidence 36899999999965554 5678889999999998641 025789999999865433 1234589999999
Q ss_pred HhhhhHhhhhhHHhh
Q 017048 267 LKTAKEKHVQRLVHI 281 (378)
Q Consensus 267 ~dcik~~~~qr~~~~ 281 (378)
+||++++.+++.-+|
T Consensus 85 ~Dcin~~~lLp~~~Y 99 (100)
T 2ep8_A 85 FDSVNARLLLPVAEY 99 (100)
T ss_dssp HHHHHHTSCCCTTTC
T ss_pred HHHHhcCCcCChhhc
Confidence 999999988765444
No 39
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.10 E-value=2.7e-11 Score=99.55 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=67.0
Q ss_pred CccccccceeecchhhH---HHHHHHHHHHhhccceeeeeeeeccCCceEEecccc---hhhhhcCCCCccchhhHHhhh
Q 017048 197 NSTLSGCSMYVDSDVSE---ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS---VQKYMGHSNNLVTPVWVLKTA 270 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~---~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s---~~~~l~~~~~IVt~~WI~dci 270 (378)
..+|+|+++|++..-.+ ...+.+..+++++||++++. ++..+||||+.++. .++....+++||++.||+||+
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~--l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~ 82 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKT--FNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCR 82 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSS--CCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHH
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecc--cCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHH
Confidence 46899999999533211 23467999999999999999 58999999998643 333345679999999999999
Q ss_pred hHhhhhhHHhhhH
Q 017048 271 KEKHVQRLVHISA 283 (378)
Q Consensus 271 k~~~~qr~~~~s~ 283 (378)
+++...+.-.|..
T Consensus 83 ~~~~~vdE~~Y~i 95 (107)
T 3pa6_A 83 TAGAHIDESLFPA 95 (107)
T ss_dssp HHTSCCCGGGSBC
T ss_pred HhCccCChhcccC
Confidence 9999888766654
No 40
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.10 E-value=5.6e-11 Score=112.56 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=70.8
Q ss_pred CCCCccceEEEEcccC----------HHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCc-hhhHhhhhcCCCceEE
Q 017048 54 ANAPFSGLVICVTGLS----------KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGR-KFEHALKHGSRNGLYI 122 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~----------~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~-Ky~~A~k~~~~~gi~I 122 (378)
+..+|+||+|++.++. ......++.++..+||+++..++..+||+|+...... ....+++.....+++|
T Consensus 161 ~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~i 240 (263)
T 3ii6_X 161 PLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKI 240 (263)
T ss_dssp GGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCEE
T ss_pred cchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhhcCCCCEE
Confidence 5679999999997652 1133446899999999999999999999999764331 1222333222357899
Q ss_pred EEeehhhhhhhcccccccceeee
Q 017048 123 VTLGWFVDSVRRNVRLSESLYTV 145 (378)
Q Consensus 123 V~~~Wl~dci~~g~~l~e~~Y~~ 145 (378)
|+++||.||++.|+++||++|.+
T Consensus 241 V~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 241 LKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp EETHHHHHHHHTTSCCCGGGTBC
T ss_pred eChHHHHHHHHcCCcCCHhhCCC
Confidence 99999999999999999999964
No 41
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=8.7e-11 Score=97.20 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=70.7
Q ss_pred CCCCCccceEEEEcccCH-HHHHHHHHHHHHhcCccCCCCCCccceEEEeeecC-chhhHhhhhcCCCceEEEEeehhhh
Q 017048 53 PANAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWFVD 130 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~-~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~-~Ky~~A~k~~~~~gi~IV~~~Wl~d 130 (378)
....+|.|.+|||||... -.|.+++++|+.+||+++..++.+++|||++...+ .|+.+|.+ +||+||+.+||.+
T Consensus 18 ~~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~----lgI~IisE~~f~~ 93 (112)
T 2ebu_A 18 GAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAA----LGTKIIDEDGLLN 93 (112)
T ss_dssp CCSSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHH----HTCEEEEHHHHHH
T ss_pred CCCCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHH----cCCeEEeHHHHHH
Confidence 445689999999999874 58999999999999999999999999999998877 89999998 5999999999999
Q ss_pred hhhc
Q 017048 131 SVRR 134 (378)
Q Consensus 131 ci~~ 134 (378)
.+..
T Consensus 94 ll~~ 97 (112)
T 2ebu_A 94 LIRT 97 (112)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9864
No 42
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=97.33 Aligned_cols=82 Identities=13% Similarity=0.289 Sum_probs=67.2
Q ss_pred ccCccccccceeec-chhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccc---hhhhhc-------CCCCccch
Q 017048 195 SMNSTLSGCSMYVD-SDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS---VQKYMG-------HSNNLVTP 263 (378)
Q Consensus 195 ~~~~lF~G~~fyl~-~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s---~~~~l~-------~~~~IVt~ 263 (378)
.+..+|.|+++||. .++...+++.+.++++++||+|++. +++.+||||+++.+ +.+++. .+.+||+.
T Consensus 16 ~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~--ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i 93 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENE--LSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDV 93 (120)
T ss_dssp SSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSS--CCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEH
T ss_pred CcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeec--cCCCcCEEEecCCCHHHHHHHHhccccccccccEEeec
Confidence 34789999999993 4677778899999999999999999 59999999997533 333322 36899999
Q ss_pred hhHHhhhhHhhhhhH
Q 017048 264 VWVLKTAKEKHVQRL 278 (378)
Q Consensus 264 ~WI~dcik~~~~qr~ 278 (378)
.|+.+|+++|.+++.
T Consensus 94 ~Wl~esmk~g~lv~e 108 (120)
T 2coe_A 94 SWLIECIGAGKPVEM 108 (120)
T ss_dssp HHHHHHHHTTSCCCC
T ss_pred HHHHHHHHcCCccCc
Confidence 999999999987653
No 43
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.04 E-value=8.2e-11 Score=96.53 Aligned_cols=91 Identities=22% Similarity=0.303 Sum_probs=69.0
Q ss_pred CCCCccceEEEEc--ccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhc----CCCceEEEEeeh
Q 017048 54 ANAPFSGLVICVT--GLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHG----SRNGLYIVTLGW 127 (378)
Q Consensus 54 ~~~~F~g~~I~vs--G~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~----~~~gi~IV~~~W 127 (378)
+..+|+|++|++- +.....++-....+..+||++...++..+||+|+.+.. .+...+++. ...+++||+++|
T Consensus 8 ~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~--s~~~~l~~l~~~~l~~~~~iV~~~W 85 (106)
T 2jw5_A 8 AEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGM--DYERALRLLRLPQLPPGAQLVKSAW 85 (106)
T ss_dssp GGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSS--CHHHHHHHTTCSSCCSSCEEEEHHH
T ss_pred CcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCC--CHHHHHHHHhhcccCCCcEEecCch
Confidence 5779999999984 33233444556688899999999999999999996432 233333321 225679999999
Q ss_pred hhhhhhcccccccceeeee
Q 017048 128 FVDSVRRNVRLSESLYTVK 146 (378)
Q Consensus 128 l~dci~~g~~l~e~~Y~~~ 146 (378)
+.||++.|+++||+.|.+.
T Consensus 86 v~dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 86 LSLCLQERRLVDVAGFSIF 104 (106)
T ss_dssp HHHHHHTCSCCCGGGTBCS
T ss_pred HHHHHhcCcccCccccccc
Confidence 9999999999999999753
No 44
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.04 E-value=3.7e-11 Score=98.64 Aligned_cols=84 Identities=15% Similarity=0.218 Sum_probs=64.7
Q ss_pred cCccccccceeecc-hhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecc-c---chhhh-----hcCCCCccchhh
Q 017048 196 MNSTLSGCSMYVDS-DVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE-D---SVQKY-----MGHSNNLVTPVW 265 (378)
Q Consensus 196 ~~~lF~G~~fyl~~-gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~-~---s~~~~-----l~~~~~IVt~~W 265 (378)
++.+|+||+|||.+ +.....++.....++.+||++++. +++++||||+++ . ...++ +...++||+++|
T Consensus 8 ~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~--~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~W 85 (106)
T 2jw5_A 8 AEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPA--QGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAW 85 (106)
T ss_dssp GGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCST--TCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHH
T ss_pred CcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeec--cCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCch
Confidence 47899999999942 443345666777999999999999 588999999984 2 22222 234668999999
Q ss_pred HHhhhhHhhhhhHHhh
Q 017048 266 VLKTAKEKHVQRLVHI 281 (378)
Q Consensus 266 I~dcik~~~~qr~~~~ 281 (378)
+.||++++.+++.-+|
T Consensus 86 v~dci~~~~llde~~y 101 (106)
T 2jw5_A 86 LSLCLQERRLVDVAGF 101 (106)
T ss_dssp HHHHHHTCSCCCGGGT
T ss_pred HHHHHhcCcccCcccc
Confidence 9999999998876555
No 45
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1e-10 Score=110.28 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=52.0
Q ss_pred CCCCCccceEEEEcccC-HHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecC--chhhHhhhh--cCC-------Cce
Q 017048 53 PANAPFSGLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--RKFEHALKH--GSR-------NGL 120 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~-~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~--~Ky~~A~k~--~~~-------~gi 120 (378)
.+..+|+||+|+++|+. ...+..++.+|..+||+++.+++..+||+|+..... .+...+++. ..+ .++
T Consensus 156 ~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKI 235 (264)
T ss_dssp CCCC--------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCCC
T ss_pred CchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCCC
Confidence 46779999999999975 445566788999999999999987777777743221 222112211 001 244
Q ss_pred -EEEEeehhhhhhhcccccccceeeeec
Q 017048 121 -YIVTLGWFVDSVRRNVRLSESLYTVKS 147 (378)
Q Consensus 121 -~IV~~~Wl~dci~~g~~l~e~~Y~~~~ 147 (378)
+||+++||.||++.|+++||+.|.+.+
T Consensus 236 ~~iV~~~Wv~dci~~~~ll~e~~Y~~~~ 263 (264)
T 1z56_C 236 ARVVAPEWVDHSINENCQVPEEDFPVVN 263 (264)
T ss_dssp CEEECTHHHHHHHTTSCCCSSCCC----
T ss_pred CEEecHHHHHHHHHcCCcCCHHHcCCCC
Confidence 999999999999999999999997654
No 46
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=98.96 E-value=1.7e-10 Score=95.63 Aligned_cols=78 Identities=17% Similarity=0.277 Sum_probs=68.1
Q ss_pred CCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeee---cCchhhHhhhhcCCCceEEEEeehhhhh
Q 017048 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF---GGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (378)
Q Consensus 55 ~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~---~~~Ky~~A~k~~~~~gi~IV~~~Wl~dc 131 (378)
..+|.|++|++||.....|.+++++|+.+||+++..++.+|+|||++.. .+.|+.+|.+ .||+||+.+||.++
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~----lgI~IvsE~~l~~~ 83 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKE----ANIRVVSEDFLQDV 83 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHH----TTCCEECTHHHHHH
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHH----CCCcEEeHHHHHHH
Confidence 5679999999999765589999999999999999999999999999843 6789999987 69999999997776
Q ss_pred hhccc
Q 017048 132 VRRNV 136 (378)
Q Consensus 132 i~~g~ 136 (378)
...+.
T Consensus 84 ~~~~~ 88 (113)
T 2cok_A 84 SASTK 88 (113)
T ss_dssp HSCCS
T ss_pred Hhhch
Confidence 65443
No 47
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.94 E-value=2.9e-10 Score=89.91 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=61.7
Q ss_pred CCCCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCC-CccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhh
Q 017048 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH-PQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt-~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dc 131 (378)
.-+.+|.|++|++.+-.+.. ..|+++|.++||.+....+ .++||+|+... + ..+..+|+|+||+||
T Consensus 12 ~LpdiFsg~~~~l~~~v~~~-~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~---------~---~~~~~~V~p~WI~dc 78 (88)
T 3pc7_A 12 VLLDIFTGVRLYLPPSTPDF-SRLRRYFVAFDGDLVQEFDMTSATHVLGSRD---------K---NPAAQQVSPEWIWAC 78 (88)
T ss_dssp CCCCCSTTCEECCCTTSTTH-HHHHHHHHHTTCEECCGGGGGGCSEEESCCT---------T---CTTSEEECHHHHHHH
T ss_pred cCChhhcCeEEEccCCcCch-hhheeeeeecCCEEecccCCCcCeEEecCCC---------c---CCCCcEEchHHHHHH
Confidence 35789999999996543322 6789999999999988777 48999997552 1 257889999999999
Q ss_pred hhcccccccc
Q 017048 132 VRRNVRLSES 141 (378)
Q Consensus 132 i~~g~~l~e~ 141 (378)
++++++|+++
T Consensus 79 I~k~~Ll~~~ 88 (88)
T 3pc7_A 79 IRKRRLVAPS 88 (88)
T ss_dssp HHHTSCCSCC
T ss_pred HhCCcccCCC
Confidence 9999999753
No 48
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.92 E-value=2.8e-10 Score=103.41 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=68.0
Q ss_pred CCCCccce-EEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhh
Q 017048 54 ANAPFSGL-VICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 54 ~~~~F~g~-~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
..++|+|+ ++|++++....++.|+.+|+.+||++..++. .++++|+. ... +. ..++++|+|+||+||+
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~-~~~iiI~~-~~~-----~~----~~~~~~V~p~Wi~DsI 184 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPR-QASIVIGP-YSG-----KK----KATVKYLSEKWVLDSI 184 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGG-GCSEEESC-CCS-----CC----CTTCEEECHHHHHHHH
T ss_pred cchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCC-CCEEEEeC-Cch-----hc----cCCCcEEChhHHHHHH
Confidence 46899999 6888998777788999999999999999984 56666653 211 22 2689999999999999
Q ss_pred hcccccccceeeee
Q 017048 133 RRNVRLSESLYTVK 146 (378)
Q Consensus 133 ~~g~~l~e~~Y~~~ 146 (378)
.+++.+|+++|.+.
T Consensus 185 ~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 185 TQHKVCAPENYLLS 198 (199)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred HcCCcCChHhccCC
Confidence 99999999999764
No 49
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=6e-09 Score=87.07 Aligned_cols=90 Identities=17% Similarity=0.264 Sum_probs=70.6
Q ss_pred CCCCCccceEEEEccc--CHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhc------CCCceEEEE
Q 017048 53 PANAPFSGLVICVTGL--SKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHG------SRNGLYIVT 124 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~--~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~------~~~gi~IV~ 124 (378)
++...|.|++|++-.+ ...-++-+.+++..+||++.+.+++.+||+|+.+. ....+.+|. ...+.+||+
T Consensus 16 ~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~---~~~e~~~~l~~~~l~~~~~~~lv~ 92 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENN---SGSDVLEWLQAQKVQVSSQPELLD 92 (120)
T ss_dssp SSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSC---CHHHHHHHHHHCCCCCSSCCEEEE
T ss_pred CcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCC---CHHHHHHHHhccccccccccEEee
Confidence 5678999999999654 45677788999999999999999999999999533 222222221 123689999
Q ss_pred eehhhhhhhcccccccceeee
Q 017048 125 LGWFVDSVRRNVRLSESLYTV 145 (378)
Q Consensus 125 ~~Wl~dci~~g~~l~e~~Y~~ 145 (378)
.+||.||+++|+++||+.|..
T Consensus 93 i~Wl~esmk~g~lv~ee~~~~ 113 (120)
T 2coe_A 93 VSWLIECIGAGKPVEMTGKHQ 113 (120)
T ss_dssp HHHHHHHHHTTSCCCCSSSSB
T ss_pred cHHHHHHHHcCCccCcccceE
Confidence 999999999999999866654
No 50
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.86 E-value=1.1e-09 Score=99.51 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=69.2
Q ss_pred CCCCccceEEEEcc-cCHHHHHHHHHHHHHhcCccCCCCCCc----cce-EEEeeecC----chhhH-hhhhcCCCceEE
Q 017048 54 ANAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQ----CTH-LVVQSFGG----RKFEH-ALKHGSRNGLYI 122 (378)
Q Consensus 54 ~~~~F~g~~I~vsG-~~~~~r~~L~~lI~~~GG~~~~~lt~~----~TH-LI~~~~~~----~Ky~~-A~k~~~~~gi~I 122 (378)
..++|.|+.||++| +....+..|+.+|+.+||++...+... .+| +|+..++. .++.. |. ..+++|
T Consensus 112 ~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~----~~~~~i 187 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQ----MCEAPV 187 (214)
T ss_dssp TSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTT----TCSSCE
T ss_pred CCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHH----hcCCcE
Confidence 56799999999987 555678899999999999999987642 224 55544322 13332 22 368999
Q ss_pred EEeehhhhhhhcccccccceeeeec
Q 017048 123 VTLGWFVDSVRRNVRLSESLYTVKS 147 (378)
Q Consensus 123 V~~~Wl~dci~~g~~l~e~~Y~~~~ 147 (378)
|+++||.||+.+++.+|++.|.+..
T Consensus 188 V~~~Wi~dsi~~~~~l~~~~Y~l~~ 212 (214)
T 1t15_A 188 VTREWVLDSVALYQCQELDTYLIPQ 212 (214)
T ss_dssp EEHHHHHHHHHHTSCCCSGGGBCCC
T ss_pred EeccHHHHhHhhcCcCCCcceeecc
Confidence 9999999999999999999998753
No 51
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.84 E-value=2.1e-09 Score=99.06 Aligned_cols=135 Identities=10% Similarity=0.029 Sum_probs=93.6
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc-chhhh---hcCCCCccchhhHHhhhhH
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-SVQKY---MGHSNNLVTPVWVLKTAKE 272 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~-s~~~~---l~~~~~IVt~~WI~dcik~ 272 (378)
...+.|+.|.+ +||++.+++.+.++|+.+||++++. ..++||+|+... ...+| ++.++.||+++||.+|+++
T Consensus 11 ~~~~~~~~i~~-SG~~~~~~~~l~~~i~~lGg~v~~~---~~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~ 86 (219)
T 3sqd_A 11 LTPELTPFVLF-TGFEPVQVQQYIKKLYILGGEVAES---AQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRC 86 (219)
T ss_dssp CCGGGCCEEEE-CSCCHHHHHHHHHHHHHTTCEECSS---GGGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHH
T ss_pred cCCCCCeEEEE-eCCChHHHHHHHHHHHHCCCEEeCC---CCCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHc
Confidence 35578999999 7999888889999999999999988 389999999862 22334 5688999999999999999
Q ss_pred hhhhhHHhhhH-h--HHHHHhH----HHHhh--hccchhhhhcCCCCCCCchhhhhhccHHHHHHHHHhhhhhhccchhh
Q 017048 273 KHVQRLVHISA-D--LARQVGM----MLENI--QNGIAREEINGGNVPEDAQSCKNKISQEKRQQTVNLAKNGVRSRRSR 343 (378)
Q Consensus 273 ~~~qr~~~~s~-d--l~~~~~~----~le~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 343 (378)
+.+.+.-.|.. | .....+. .+... .....+..+.- ++....+.++-++||+++.+.|-.+.+.
T Consensus 87 ~~~l~e~~y~l~d~~~e~~~~~~l~~~l~ra~~~~LF~G~~f~i--------t~~~~~~~~~l~~lI~~~GG~v~~~~p~ 158 (219)
T 3sqd_A 87 QKFIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYI--------TPGICPSLSTMKAIVECAGGKVLSKQPS 158 (219)
T ss_dssp TSCCCSGGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTEEEEE--------CTTCSSCHHHHHHHHHHTTCEEESSCCC
T ss_pred CCCCChHhccCCCchhhhhcCCChHHHhhhhccccccCCcEEEE--------eCCCCCCHHHHHHHHHHCCCEEECCCCc
Confidence 98876666532 1 1111111 11111 12222222111 2223346789999999999999888764
No 52
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.82 E-value=1.5e-09 Score=99.84 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=63.0
Q ss_pred CCCccceEEEEcc-cCHHHHHHHHHHHHHhcCccCCCCCCc-----cceEEEeee----cCchhhHhhhhcCCCceEEEE
Q 017048 55 NAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQ-----CTHLVVQSF----GGRKFEHALKHGSRNGLYIVT 124 (378)
Q Consensus 55 ~~~F~g~~I~vsG-~~~~~r~~L~~lI~~~GG~~~~~lt~~-----~THLI~~~~----~~~Ky~~A~k~~~~~gi~IV~ 124 (378)
.++|.|+.|+++| +....+..|..+|+.+||++...+... ++|+|+..+ ...++..+.+ ..+++||+
T Consensus 115 ~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~---~~~i~iVs 191 (229)
T 1l0b_A 115 EKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQ---LCKGRLVM 191 (229)
T ss_dssp --CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC----------------------CEEE
T ss_pred hhhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHH---HcCCeEee
Confidence 4799999999977 555678899999999999999998752 578655443 2344443322 36899999
Q ss_pred eehhhhhhhcccccccceeeeecc
Q 017048 125 LGWFVDSVRRNVRLSESLYTVKSI 148 (378)
Q Consensus 125 ~~Wl~dci~~g~~l~e~~Y~~~~~ 148 (378)
++||+||+.+++.++++.|.+...
T Consensus 192 ~~WlldsI~~~~~~~~~~Y~l~~~ 215 (229)
T 1l0b_A 192 WDWVLDSISVYRCRDLDAYLVQNI 215 (229)
T ss_dssp THHHHHHHHTTSCCCGGGGBCC--
T ss_pred hhHHHHHHhcCCcCCccceEcccc
Confidence 999999999999999999988753
No 53
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.72 E-value=8.3e-09 Score=93.87 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=88.7
Q ss_pred ccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc---chhhh---hcCCCCccchhhHHhhhhHhhh
Q 017048 202 GCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKY---MGHSNNLVTPVWVLKTAKEKHV 275 (378)
Q Consensus 202 G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~---s~~~~---l~~~~~IVt~~WI~dcik~~~~ 275 (378)
|+.|++ +|+++++++.|.++++.+||++++. .+.++||||+..+ ...+| +..++.||+++||.+|++++.+
T Consensus 2 ~~vi~~-sg~~~~~~~~l~~~~~~~G~~~~~~--~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~ 78 (210)
T 2nte_A 2 PLVLIG-SGLSSEQQKMLSELAVILKAKKYTE--FDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVC 78 (210)
T ss_dssp CCEEEE-SSCCHHHHHHHHHHHHHTTCEEESS--CCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSC
T ss_pred CEEEEE-CCCCHHHHHHHHHHHHHcCCEEeCC--CCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCc
Confidence 566777 8999889999999999999999998 5889999999762 23344 4578999999999999999998
Q ss_pred hhHHhhhHhHHHHHhHHHHhhhccchhhhhc-CCCCCCCchhhhhhccHHHHHHHHHhhhhhhccchhh
Q 017048 276 QRLVHISADLARQVGMMLENIQNGIAREEIN-GGNVPEDAQSCKNKISQEKRQQTVNLAKNGVRSRRSR 343 (378)
Q Consensus 276 qr~~~~s~dl~~~~~~~le~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 343 (378)
.+.-+|...-....+.+-. +. ....++ |..+--.. +-.+.+.++-+++|+++++.|..+.+.
T Consensus 79 ~~e~~y~~~~~~~~~r~~~--~~--~~~~lF~g~~~~l~~--~~~~~~~~~l~~lI~~~GG~v~~~~p~ 141 (210)
T 2nte_A 79 EQEEKYEIPEGPRRSRLNR--EQ--LLPKLFDGCYFYLWG--TFKHHPKDNLIKLVTAGGGQILSRKPK 141 (210)
T ss_dssp CCGGGTBCTTHHHHHHHHH--HT--TCCCTTTTCEEEECS--CCSSSCHHHHHHHHHHTTCEEESSCCC
T ss_pred CChhhccCCCCChhhhhcc--cc--ccccccCceEEEEec--cCCCCCHHHHHHHHHHCCCEEEecCCC
Confidence 7766664321111111111 00 001122 22211100 112245778899999999988876654
No 54
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.65 E-value=1.7e-08 Score=85.19 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=64.5
Q ss_pred Cccccccceeec-chhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccc---hhhhh-------c---CCCCccc
Q 017048 197 NSTLSGCSMYVD-SDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS---VQKYM-------G---HSNNLVT 262 (378)
Q Consensus 197 ~~lF~G~~fyl~-~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s---~~~~l-------~---~~~~IVt 262 (378)
...|.|+++||- .+....+++.|.++++..|+++.+. +.+.|||||++..+ +.+|+ . .++++|+
T Consensus 8 ~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~--~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLd 85 (133)
T 2dun_A 8 STRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDA--CSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLD 85 (133)
T ss_dssp SCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSS--CCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEE
T ss_pred ccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccc--cCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEec
Confidence 578999999992 2444568999999999999999999 69999999998743 34444 1 4578999
Q ss_pred hhhHHhhhhHhhhhh
Q 017048 263 PVWVLKTAKEKHVQR 277 (378)
Q Consensus 263 ~~WI~dcik~~~~qr 277 (378)
..|+.+|+++|.+..
T Consensus 86 isWltecm~~g~pV~ 100 (133)
T 2dun_A 86 ISWLTESLGAGQPVP 100 (133)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred cHHHHHHHhcCCcCC
Confidence 999999999997644
No 55
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.60 E-value=2.8e-08 Score=92.52 Aligned_cols=82 Identities=9% Similarity=0.079 Sum_probs=66.0
Q ss_pred cccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc-chhhh---hcCCCCccchhhHHhhhhHhh
Q 017048 199 TLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-SVQKY---MGHSNNLVTPVWVLKTAKEKH 274 (378)
Q Consensus 199 lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~-s~~~~---l~~~~~IVt~~WI~dcik~~~ 274 (378)
.-.+.+|.+ +|+++++++.+.++|+.+||+++++...+.+|||||+... ...+| ++.++.||+++||.+|+++|.
T Consensus 6 ~~~~~~~~~-Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~ 84 (235)
T 3al2_A 6 LKKQYIFQL-SSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGH 84 (235)
T ss_dssp --CCCEEEE-ESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTS
T ss_pred CCCCEEEEE-cCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCC
Confidence 346778888 7888888889999999999999863114789999999973 34455 568999999999999999999
Q ss_pred hhhHHhh
Q 017048 275 VQRLVHI 281 (378)
Q Consensus 275 ~qr~~~~ 281 (378)
+.+.-+|
T Consensus 85 ~l~E~~y 91 (235)
T 3al2_A 85 FVQEEDY 91 (235)
T ss_dssp CCCSGGG
T ss_pred CCChhce
Confidence 8776555
No 56
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.59 E-value=1.3e-08 Score=100.75 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=65.7
Q ss_pred CccccccceeecchhhH----HHHHHHHHHHhhccceeeeeeeeccCCceEEecccchhhh---hcC-CCCccchhhHHh
Q 017048 197 NSTLSGCSMYVDSDVSE----ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY---MGH-SNNLVTPVWVLK 268 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~----~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~~---l~~-~~~IVt~~WI~d 268 (378)
..+|+||+|+| +|+-+ ..+..+.++++.+||++++. ++.++||||+......++ ... +++||++.||++
T Consensus 280 ~~~L~G~~ivf-SG~~~~~~~~~~~~l~~l~~~lGa~v~~~--vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~ 356 (372)
T 3ef0_A 280 QKVLKGCRLLF-SGVIPLGVDVLSSDIAKWAMSFGAEVVLD--FSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTE 356 (372)
T ss_dssp TTTSTTCEEEE-ESSSCTTSCTTTSHHHHHHHHTTCEEESS--SSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHH
T ss_pred hhhcCCcEEEE-ecccCCCcchhHHHHHHHHHHcCCEEeCc--CCCCceEEEEcCCCchHHHHHHhcCCCEEEcHHHHHH
Confidence 57899999999 55532 23567999999999999999 689999999987433333 344 789999999999
Q ss_pred hhhHhhhhhHHhhh
Q 017048 269 TAKEKHVQRLVHIS 282 (378)
Q Consensus 269 cik~~~~qr~~~~s 282 (378)
|++.+...+.-.|.
T Consensus 357 c~~~~~~vdE~~Y~ 370 (372)
T 3ef0_A 357 SLSQWKRLPESDYL 370 (372)
T ss_dssp HHHTTSCCCGGGGB
T ss_pred HHHhCCcCChhhce
Confidence 99988777665553
No 57
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.59 E-value=2.2e-08 Score=94.51 Aligned_cols=82 Identities=10% Similarity=0.223 Sum_probs=63.3
Q ss_pred CccccccceeecchhhHH-----------------------------HHHHHHHHHhhccceeeeeeeecc------CCc
Q 017048 197 NSTLSGCSMYVDSDVSEE-----------------------------LRNKVFEAATNEGATLVNQWFVGC------GAS 241 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~-----------------------------~~~~L~~lI~~~GG~vv~~~~~~~------~vT 241 (378)
..+|.|+.|++ ++...+ .+..|+++|+.+||++++++ .. .+|
T Consensus 13 ~~iF~g~~F~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~--~~~~~~~~~~t 89 (259)
T 1kzy_C 13 KTLFLGYAFLL-TMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDF--NEAQCNTAYQC 89 (259)
T ss_dssp TTTTTTEEEEE-CCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSC--CTTTTTTTCEE
T ss_pred CcCcCCcEEEE-EcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCc--cccccccCCCe
Confidence 68999999999 444322 34689999999999999884 32 258
Q ss_pred eEEecc-cchhhh---hcCCCCccchhhHHhhhhHhhhhhHHhh
Q 017048 242 YVVCEE-DSVQKY---MGHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (378)
Q Consensus 242 HVV~~~-~s~~~~---l~~~~~IVt~~WI~dcik~~~~qr~~~~ 281 (378)
|+|++. ....+| ++.++.||++.||.||++++.+.++-+|
T Consensus 90 ~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y 133 (259)
T 1kzy_C 90 LLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNY 133 (259)
T ss_dssp EEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGS
T ss_pred EEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHc
Confidence 999987 223344 4689999999999999999988776655
No 58
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.58 E-value=5.7e-08 Score=81.94 Aligned_cols=90 Identities=13% Similarity=0.208 Sum_probs=71.9
Q ss_pred CCCCCccceEEEEccc--CHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhc---------CCCceE
Q 017048 53 PANAPFSGLVICVTGL--SKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHG---------SRNGLY 121 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~--~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~---------~~~gi~ 121 (378)
.....|.|++|++-.. ...-++-|.+++..+|+.+.+.+++.+||+|+.+.+ +..+++|. ...+..
T Consensus 6 ~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s---~~~~~~~L~~~~~~l~~~~~~~~ 82 (133)
T 2dun_A 6 SGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETS---AEEAVSWQERRMAAAPPGCTPPA 82 (133)
T ss_dssp CSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCC---HHHHHHHHHHHHHHSCTTCCCCE
T ss_pred CCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCC---HHHHHHHHHHhhcccCcCCCCcE
Confidence 3568899999999765 346788999999999999999999999999994332 33344332 235789
Q ss_pred EEEeehhhhhhhcccccccceeee
Q 017048 122 IVTLGWFVDSVRRNVRLSESLYTV 145 (378)
Q Consensus 122 IV~~~Wl~dci~~g~~l~e~~Y~~ 145 (378)
+|+..||.+|++.|+.+|++.|..
T Consensus 83 lLdisWltecm~~g~pV~~e~~~~ 106 (133)
T 2dun_A 83 LLDISWLTESLGAGQPVPVECRHR 106 (133)
T ss_dssp EEEHHHHHHHHHHTSCCCCCTTTS
T ss_pred EeccHHHHHHHhcCCcCCcccceE
Confidence 999999999999999999855543
No 59
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.57 E-value=2.4e-08 Score=91.00 Aligned_cols=90 Identities=17% Similarity=0.243 Sum_probs=71.3
Q ss_pred CCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCc--cceEEEee-ecCchhhHhhhhcCCCceEEEEeehhhhh
Q 017048 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQ--CTHLVVQS-FGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (378)
Q Consensus 55 ~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~--~THLI~~~-~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dc 131 (378)
.++|+|+.|++++.....+..|..+|+.+||++...+.+. .+|+|... .+..++..+.+ .+++||+++||++|
T Consensus 113 ~~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~~~----~~i~vvs~eWi~~s 188 (209)
T 2etx_A 113 RRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLR----VGLPLLSPEFLLTG 188 (209)
T ss_dssp SCTTTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHHHH----HTCCEECTHHHHHH
T ss_pred CCCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHHHH----CCCeEEcHHHHHHH
Confidence 3899999999998866667899999999999999887643 25666643 34455666665 58999999999999
Q ss_pred hhcccccccceeeeeccC
Q 017048 132 VRRNVRLSESLYTVKSID 149 (378)
Q Consensus 132 i~~g~~l~e~~Y~~~~~~ 149 (378)
+..++ ++++.|.+..+.
T Consensus 189 I~~q~-ld~e~y~l~~~~ 205 (209)
T 2etx_A 189 VLKQE-AKPEAFVLSPLE 205 (209)
T ss_dssp HHHTC-CCGGGGBCCTTC
T ss_pred HHhcc-cChHHheecCCC
Confidence 99866 599999887643
No 60
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.56 E-value=1.9e-08 Score=94.01 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=63.3
Q ss_pred ccccccceeecch--hhHHHHHHHHHHHhhccceeeeee----e-ecc-------------------CCceEEeccc-ch
Q 017048 198 STLSGCSMYVDSD--VSEELRNKVFEAATNEGATLVNQW----F-VGC-------------------GASYVVCEED-SV 250 (378)
Q Consensus 198 ~lF~G~~fyl~~g--fs~~~~~~L~~lI~~~GG~vv~~~----~-~~~-------------------~vTHVV~~~~-s~ 250 (378)
.+|+|+.|+|... +++..+..|+++|+.+||++++.. | ... ..||+|++.. ..
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 3799999999544 456678889999999999999861 1 111 2499999863 23
Q ss_pred hhh---hcCCCCccchhhHHhhhhHhhhhhHHh
Q 017048 251 QKY---MGHSNNLVTPVWVLKTAKEKHVQRLVH 280 (378)
Q Consensus 251 ~~~---l~~~~~IVt~~WI~dcik~~~~qr~~~ 280 (378)
.+| ++.++.||++.||.||++++.+++.-.
T Consensus 81 ~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ 113 (241)
T 2vxb_A 81 VKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSP 113 (241)
T ss_dssp HHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGG
T ss_pred HHHHHHHHcCCCEecHHHHHHHHHcCCcCChhh
Confidence 344 568999999999999999998766543
No 61
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.45 E-value=3.5e-08 Score=99.39 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=65.0
Q ss_pred CccccccceeecchhhHH----HHHHHHHHHhhccceeeeeeeeccCCceEEecccchhhh---hcC-CCCccchhhHHh
Q 017048 197 NSTLSGCSMYVDSDVSEE----LRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY---MGH-SNNLVTPVWVLK 268 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~----~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~~---l~~-~~~IVt~~WI~d 268 (378)
..+|.||+|+| +|+-+. .+..+.++++.+||++... ++..+||||+......++ ... +++||++.||++
T Consensus 350 ~~~L~G~~Ivf-SG~~p~~~~~~r~~l~~~~~~lGa~~~~~--vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~d 426 (442)
T 3ef1_A 350 QKVLKGCRLLF-SGVIPLGVDVLSSDIAKWAMSFGAEVVLD--FSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTE 426 (442)
T ss_dssp HTTSTTCEEEE-ESSSCTTSCSTTSHHHHHHHTTTCEECSS--SSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHH
T ss_pred hcccCCcEEEE-ecccCCCCCccHHHHHHHHHHcCCEEeCC--CCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHH
Confidence 56899999999 565321 3567999999999999999 699999999987433333 333 689999999999
Q ss_pred hhhHhhhhhHHhh
Q 017048 269 TAKEKHVQRLVHI 281 (378)
Q Consensus 269 cik~~~~qr~~~~ 281 (378)
|++.+...+.-.|
T Consensus 427 cl~~~krldE~~Y 439 (442)
T 3ef1_A 427 SLSQWKRLPESDY 439 (442)
T ss_dssp HHHHTSCCCGGGT
T ss_pred HHHcCCcCChhcc
Confidence 9999877665544
No 62
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.36 E-value=8.8e-08 Score=88.27 Aligned_cols=124 Identities=8% Similarity=0.044 Sum_probs=82.7
Q ss_pred cccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc-chhhh---hcCCCCccchhhHHhhhhHhhhh
Q 017048 201 SGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-SVQKY---MGHSNNLVTPVWVLKTAKEKHVQ 276 (378)
Q Consensus 201 ~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~-s~~~~---l~~~~~IVt~~WI~dcik~~~~q 276 (378)
.+..|.| +|+++.+ ..++|+.+||.+++. .+++||+|++.. ...+| ++.++.||+++||.+|++++.+.
T Consensus 7 ~~~~v~f-SG~~~~~---~~~~i~~lGg~v~~~---~~~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l 79 (220)
T 3l41_A 7 KRVYITF-TGYDKKP---SIDNLKKLDMSITSN---PSKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIV 79 (220)
T ss_dssp CCEEEEE-CSCSSCC---CCGGGGGGTEEECSC---TTTCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCC
T ss_pred ceEEEEE-eccCCCC---CcchHhhcceeeccC---chhhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhcc
Confidence 4567777 6887643 388999999999998 357999999862 23444 57899999999999999999887
Q ss_pred hHHhhhH---hHHHHHhHHHHh--------hhccchhhhhcCCCCCCCchhhhh--hccHHHHHHHHHhhhhhhcc
Q 017048 277 RLVHISA---DLARQVGMMLEN--------IQNGIAREEINGGNVPEDAQSCKN--KISQEKRQQTVNLAKNGVRS 339 (378)
Q Consensus 277 r~~~~s~---dl~~~~~~~le~--------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~ 339 (378)
+.-+|.. +.....+.-|+. -.....+..+.- ++.. ..+.++-++||++|.+.|-.
T Consensus 80 ~e~~y~l~d~~~e~~~~~~l~~~~~rar~~~~~LF~G~~f~i--------t~~~~~~p~~~~l~~iI~~~GG~v~~ 147 (220)
T 3l41_A 80 DEEPYLLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYL--------TSKTVAPENVPAVISIVKSNGGVCST 147 (220)
T ss_dssp CSGGGBCCCHHHHHHHTSCHHHHHHHHHHHCSCTTTTSEEEE--------ETTSSCGGGHHHHHHHHHHTTCEEEE
T ss_pred ccCccccCCcHHHhhccccHHHHHHHHHhcCchhhhheeEEE--------eccccCCCCCceEEEEEecCCcEech
Confidence 7766632 122222221211 112222211111 2222 35678999999999999988
No 63
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=98.27 E-value=8.9e-07 Score=70.53 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=61.3
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc---chhhhhcCCCCccchhhHHhhhhH
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAKE 272 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~---s~~~~l~~~~~IVt~~WI~dcik~ 272 (378)
...|.|.+|+|...++. .|+.++.+|+.+||++.++ +..+++|||+.+. .+++....+++||+.+|+++++..
T Consensus 5 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~s--Vskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 5 GEALKGLTFVITGELSR-PREEVKALLRRLGAKVTDS--VSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp CCSSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEESC--CSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CCCcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCc--ccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 45799999999555655 7899999999999999999 7999999999873 334445679999999999999864
No 64
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=98.14 E-value=3e-07 Score=97.00 Aligned_cols=77 Identities=26% Similarity=0.332 Sum_probs=0.0
Q ss_pred CCCccceEEEEcccCHHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhhhc
Q 017048 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVRR 134 (378)
Q Consensus 55 ~~~F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~~ 134 (378)
..+|.|.+|++||.....|.+++++|+.+||+++.+++++|++||++...|.|+.+|.+ .||+|++.+|+.+.+..
T Consensus 585 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~----lgI~Ii~E~~f~~~l~~ 660 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSRPREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARA----LGVAVLTEEEFWRFLKE 660 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChHHHHHHH----CCCeEEeHHHHHHHHhc
Confidence 45799999999998655999999999999999999999999999999999999999997 69999999999999865
Q ss_pred c
Q 017048 135 N 135 (378)
Q Consensus 135 g 135 (378)
+
T Consensus 661 ~ 661 (667)
T 1dgs_A 661 K 661 (667)
T ss_dssp -
T ss_pred C
Confidence 4
No 65
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=98.12 E-value=1.7e-06 Score=80.22 Aligned_cols=170 Identities=13% Similarity=0.174 Sum_probs=110.8
Q ss_pred cceEEEEcccC-H----HHHHHHHHHHHHhcCccCCCCC--CccceEEEeee-cCchhhHhhhhcCCCceEEEEeehhhh
Q 017048 59 SGLVICVTGLS-K----EARKQVMEATERLGGQYSPDLH--PQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVD 130 (378)
Q Consensus 59 ~g~~I~vsG~~-~----~~r~~L~~lI~~~GG~~~~~lt--~~~THLI~~~~-~~~Ky~~A~k~~~~~gi~IV~~~Wl~d 130 (378)
-.+.+++||+. . .++ +....+|=.+.++.+ ..|+||||... .+.||..|+.++ .--.||+|+||.+
T Consensus 21 ~~i~ai~TGc~~~~~~~~D~----~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~--P~~~il~p~FI~~ 94 (256)
T 3t7k_A 21 YDLKAVCTGCFHDGFNEVDI----EILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFE--PLKFALKPEFIID 94 (256)
T ss_dssp CCEEEEESSSCSSCCCHHHH----HHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTST--TCCEEECTHHHHH
T ss_pred eeEEEEecCCcccccCHHHH----HHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccC--ccceEeCHHHHHH
Confidence 56888999987 2 333 455677988999986 48999999775 899999999742 1236999999999
Q ss_pred hhhc---cc------ccccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCcccc
Q 017048 131 SVRR---NV------RLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLS 201 (378)
Q Consensus 131 ci~~---g~------~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~ 201 (378)
|++. ++ .++.++|.+.+... |.- ++ ....+.+|+
T Consensus 95 ~Lk~ih~~~~~~~~~~l~~~dY~L~d~~~---------------------------E~l--------~r--~~~~gkLf~ 137 (256)
T 3t7k_A 95 LLKQIHSKKDKLSQININLFDYEINGINE---------------------------SII--------SK--TKLPTKVFE 137 (256)
T ss_dssp HHHHHC-------CCCCCSSTTBCTTCCH---------------------------HHH--------HH--TTSSSCHHH
T ss_pred HHHHhhcCCcccccccCChhhccCCCcch---------------------------hHH--------hh--hcccccccc
Confidence 9988 76 66677777644211 100 00 112478999
Q ss_pred ccceee---cchhhHHHHHHHHHHHhhccceeeeee----eec--------------cCCceEEecc-c-chhhh---h-
Q 017048 202 GCSMYV---DSDVSEELRNKVFEAATNEGATLVNQW----FVG--------------CGASYVVCEE-D-SVQKY---M- 254 (378)
Q Consensus 202 G~~fyl---~~gfs~~~~~~L~~lI~~~GG~vv~~~----~~~--------------~~vTHVV~~~-~-s~~~~---l- 254 (378)
|+.||. ..++..- .+.++.+++++||.=+... +.. ....||++.. + ..++| +
T Consensus 138 ~~~I~ciNls~dI~GG-~e~issIleahG~~~~~~l~~~~~~~~dl~~n~~~~~~~~~~~~~ILia~K~~q~k~Fkk~~~ 216 (256)
T 3t7k_A 138 RANIRCINLVNDIPGG-VDTIGSVLKAHGIEKINVLRSKKCTFEDIIPNDVSKQENGGIFKYVLIVTKASQVKKFTKLIN 216 (256)
T ss_dssp HTTCCEEEEETTCTTC-HHHHHHHHHHTTCCEEEEECTTTCCGGGCCCCC--------CCSEEEECSCHHHHHHHHHHHH
T ss_pred CCcceeeeeccCCCCC-HHHHHHHHHHcCCceeeecccccccHHHhhhccccccccCCCCCEEEEEccHHHHHHHHHHhh
Confidence 995554 6555432 4568999999999644321 111 1234655543 2 23344 2
Q ss_pred --c--CCCCccchhhHHhhhhH
Q 017048 255 --G--HSNNLVTPVWVLKTAKE 272 (378)
Q Consensus 255 --~--~~~~IVt~~WI~dcik~ 272 (378)
. ...-+|.=.|..+||-.
T Consensus 217 ~~~~n~~~lvveWdWCVksIF~ 238 (256)
T 3t7k_A 217 DRDKNETILIVEWNWCVESIFH 238 (256)
T ss_dssp HHSTTSCEEEECHHHHHHHHHT
T ss_pred cccccceEEEEEcHHHHHHHhh
Confidence 1 34568899999999865
No 66
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=98.05 E-value=5.7e-07 Score=94.90 Aligned_cols=75 Identities=16% Similarity=0.300 Sum_probs=0.0
Q ss_pred CCCccceEEEEcccCH-HHHHHHHHHHHHhcCccCCCCCCccceEEEeeecCchhhHhhhhcCCCceEEEEeehhhhhhh
Q 017048 55 NAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (378)
Q Consensus 55 ~~~F~g~~I~vsG~~~-~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~Wl~dci~ 133 (378)
..+|.|.+|++||... -.|.+++++|+.+||+++.+++++|++||++...|.|+++|.+ .||+|++.+|+.+.+.
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~----lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQE----LGIEVIDEAEMLRLLG 670 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChHHHHHHH----CCCcEEcHHHHHHHhc
Confidence 4579999999999875 4899999999999999999999999999999999999999997 6999999999988763
No 67
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.90 E-value=6e-06 Score=67.76 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=60.5
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccc----hhhhhcCCCCccchhhHHhhhhH
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS----VQKYMGHSNNLVTPVWVLKTAKE 272 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s----~~~~l~~~~~IVt~~WI~dcik~ 272 (378)
...|.|.+|+|...++.-.|+.++++|+.+||++.++ +..+++|||+.+.. +++....++.||+.+|+++.+..
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~s--VSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~ 107 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN--VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRN 107 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESS--CCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHH
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCc--ccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHh
Confidence 3569999999955554435788999999999999999 79999999998732 23334568999999999999865
Q ss_pred h
Q 017048 273 K 273 (378)
Q Consensus 273 ~ 273 (378)
+
T Consensus 108 ~ 108 (109)
T 2k6g_A 108 L 108 (109)
T ss_dssp T
T ss_pred C
Confidence 4
No 68
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.82 E-value=1.1e-05 Score=66.60 Aligned_cols=74 Identities=9% Similarity=0.156 Sum_probs=59.4
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc------chhhhhcCCCCccchhhHHhhh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------SVQKYMGHSNNLVTPVWVLKTA 270 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~------s~~~~l~~~~~IVt~~WI~dci 270 (378)
...|.|++|.|...++. .|+.++++|+.+||++.++ +..+++|||+..+ .+++....+++||+.+||.++.
T Consensus 8 ~~~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~s--VskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~ 84 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGT--ANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVS 84 (113)
T ss_dssp CCSSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESC--STTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHH
T ss_pred CCCcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCc--cccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHH
Confidence 45699999999666765 6888999999999999999 7899999999831 2344455789999999977766
Q ss_pred hHh
Q 017048 271 KEK 273 (378)
Q Consensus 271 k~~ 273 (378)
..+
T Consensus 85 ~~~ 87 (113)
T 2cok_A 85 AST 87 (113)
T ss_dssp SCC
T ss_pred hhc
Confidence 543
No 69
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=97.78 E-value=4.9e-05 Score=72.96 Aligned_cols=171 Identities=14% Similarity=0.020 Sum_probs=98.3
Q ss_pred ccceEEEEcccCHHHHHHHHHHHHHhcCccCCCC-CCccceEEEeeecCch----hhHhhhhcCCCceEEEEeehhhhhh
Q 017048 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDL-HPQCTHLVVQSFGGRK----FEHALKHGSRNGLYIVTLGWFVDSV 132 (378)
Q Consensus 58 F~g~~I~vsG~~~~~r~~L~~lI~~~GG~~~~~l-t~~~THLI~~~~~~~K----y~~A~k~~~~~gi~IV~~~Wl~dci 132 (378)
+.-+++|++ +.+.+.+|.+.++.+||.+. +. +..|||||.....+.| ...|+- .|.+||+++||.+..
T Consensus 113 W~P~Vl~~S--ske~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI----~gkPIV~~~Fl~al~ 185 (325)
T 3huf_A 113 WRSMCIQFD--NPEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFL----KKTVIIDDSYLQYLS 185 (325)
T ss_dssp ECCCCEEES--CHHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHH----TTCEEECHHHHHHHT
T ss_pred EeeeEEEec--CHHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHH----CCCcEecHHHHHHHH
Confidence 455666773 33467779999999999999 55 6789999997555555 667764 699999999999876
Q ss_pred hccc--------ccccceeeeeccCccCcccccccccccccCCCccccccchhhhhhhhccCCCccccccccCccccccc
Q 017048 133 RRNV--------RLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCS 204 (378)
Q Consensus 133 ~~g~--------~l~e~~Y~~~~~~~~~~~~d~~~~l~~~s~~e~s~lp~~i~E~~~s~~~e~~~~~~~~~~~~lF~G~~ 204 (378)
...+ +-+..+|.+.-. .+.|++-. +.+.--.-|+|++
T Consensus 186 ~~e~~~~~~~~~wPdp~dflP~i~----------------~g~Ep~~~-------------------~~~~~~~~~~~~~ 230 (325)
T 3huf_A 186 TVKESVIEDASLMPDALECFKNII----------------KNNDQFPS-------------------SPEDCINSLEGFS 230 (325)
T ss_dssp TCTTCCCCTTSSHHHHHHHHHHHH----------------TTCTTCCS-------------------CHHHHTTTTTTCE
T ss_pred HhhhhhhhcccCCCChHHcCCCCC----------------CCCCCCCC-------------------CHHHhhcccCceE
Confidence 4321 111222322200 00011100 0011134689998
Q ss_pred eeecchhhHHHHHHHHHHHhhccceeeeeee-------eccCCceEEeccc---chhhhhcCCCCccchhhHHhhhhHhh
Q 017048 205 MYVDSDVSEELRNKVFEAATNEGATLVNQWF-------VGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAKEKH 274 (378)
Q Consensus 205 fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~-------~~~~vTHVV~~~~---s~~~~l~~~~~IVt~~WI~dcik~~~ 274 (378)
+++..|.. .+.-+++..|=.+..-+. +.+..++||...+ +-+--...++...+.+=+++-+-+.+
T Consensus 231 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (325)
T 3huf_A 231 CAMLNTSS-----ESHHLLELLGLRISTFMSLGDIDKELISKTDFVVLNNAVYDSEKISFPEGIFCLTIEQLWKIIIERN 305 (325)
T ss_dssp EEEETCCH-----HHHHHHHHTTCEEEEEC------CCSSSSCSEEEEC-------------CCCEEEHHHHHHHHHSSS
T ss_pred EEEEcCch-----hhhHHHHHhcceeeeeeecccchHhhhccccEEEEcccccccccccCCcceEEEEHHHHHHHHhhcc
Confidence 88844443 256677888877765321 2356677777652 21111345666777777776666544
Q ss_pred h
Q 017048 275 V 275 (378)
Q Consensus 275 ~ 275 (378)
-
T Consensus 306 ~ 306 (325)
T 3huf_A 306 S 306 (325)
T ss_dssp S
T ss_pred h
Confidence 3
No 70
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=1.4e-05 Score=65.93 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=60.1
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccc----hhhhhcCCCCccchhhHHhhhhH
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS----VQKYMGHSNNLVTPVWVLKTAKE 272 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s----~~~~l~~~~~IVt~~WI~dcik~ 272 (378)
...|.|.+|+|...++.-.|+.++++|+.+||++.++ +..+++|||+.... +++....++.|++.+|+++.+..
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~s--VSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~ 97 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN--VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRT 97 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSS--CCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEecc--ccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhh
Confidence 3569999999955554435788999999999999999 79999999998732 33444568999999999999864
No 71
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.56 E-value=5e-05 Score=60.40 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=59.7
Q ss_pred cCccccccceeecchh----hHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccchhhhhcCCCCccchhhHHhhhh
Q 017048 196 MNSTLSGCSMYVDSDV----SEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAK 271 (378)
Q Consensus 196 ~~~lF~G~~fyl~~gf----s~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~~l~~~~~IVt~~WI~dcik 271 (378)
....|+|..|||..+- +....+.|+++|+.+||+|+..+|..+.-.+.|+++ |-......|+|.+|.+|+.
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSp-----yN~t~LpTVtpTYI~aC~~ 82 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSP-----YNHTNLPTVTPTYIKACCQ 82 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCT-----TCCCSSSBCCTTHHHHHHH
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeC-----CCCCCCccccHHHHHHHHh
Confidence 4678999999995431 123467899999999999999965333223444443 2234677999999999999
Q ss_pred HhhhhhHHhh
Q 017048 272 EKHVQRLVHI 281 (378)
Q Consensus 272 ~~~~qr~~~~ 281 (378)
.+.+.+.-+|
T Consensus 83 ~nTLLnv~~Y 92 (106)
T 2l42_A 83 SNSLLNMENY 92 (106)
T ss_dssp STTSCGGGGC
T ss_pred cCceeccccc
Confidence 9999887666
No 72
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.10 E-value=7e-05 Score=59.56 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=64.1
Q ss_pred CCCCccceEEEEcccC-----HHHHHHHHHHHHHhcCccCCCCCCcc--ceEEEeeecCchhhHhhhhcCCCceEEEEee
Q 017048 54 ANAPFSGLVICVTGLS-----KEARKQVMEATERLGGQYSPDLHPQC--THLVVQSFGGRKFEHALKHGSRNGLYIVTLG 126 (378)
Q Consensus 54 ~~~~F~g~~I~vsG~~-----~~~r~~L~~lI~~~GG~~~~~lt~~~--THLI~~~~~~~Ky~~A~k~~~~~gi~IV~~~ 126 (378)
...+|+|+.|.+.--+ -.+.++|+.+|..+||.+...+.++. .+.|++.... .+++.|+|.
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~------------t~LpTVtpT 75 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNH------------TNLPTVTPT 75 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCC------------CSSSBCCTT
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCC------------CCCccccHH
Confidence 4567999999996432 24678899999999999999887433 3444433221 368899999
Q ss_pred hhhhhhhcccccccceeeeec
Q 017048 127 WFVDSVRRNVRLSESLYTVKS 147 (378)
Q Consensus 127 Wl~dci~~g~~l~e~~Y~~~~ 147 (378)
+|.+|+..+.+|+-..|.++.
T Consensus 76 YI~aC~~~nTLLnv~~YLvp~ 96 (106)
T 2l42_A 76 YIKACCQSNSLLNMENYLVPY 96 (106)
T ss_dssp HHHHHHHSTTSCGGGGCCBCS
T ss_pred HHHHHHhcCceecccccccCc
Confidence 999999999999999999865
No 73
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.0035 Score=54.97 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=66.0
Q ss_pred CCCCCccceEEEEcccCH---HHHHHHHHHHHHhcCccCCC-CCCccceEEEeeecCchh----hHhhhhcCCCceEEEE
Q 017048 53 PANAPFSGLVICVTGLSK---EARKQVMEATERLGGQYSPD-LHPQCTHLVVQSFGGRKF----EHALKHGSRNGLYIVT 124 (378)
Q Consensus 53 ~~~~~F~g~~I~vsG~~~---~~r~~L~~lI~~~GG~~~~~-lt~~~THLI~~~~~~~Ky----~~A~k~~~~~gi~IV~ 124 (378)
.+..-+.|+++|+.-+.+ -.--++.+.+...|+.-.+. +.-++||.||++.+.+.- ..|.. ++|+||.
T Consensus 157 hkmtdmsgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakh----nnipivr 232 (290)
T 4gns_A 157 HKMTDMSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKH----NNIPIVR 232 (290)
T ss_dssp CCTTCCTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHH----TTCCEEC
T ss_pred cccccccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhc----cCCCccC
Confidence 356678999999987764 23446788888889875444 446899999988754332 23332 7999999
Q ss_pred eehhhhhhhcccccccceeeeec
Q 017048 125 LGWFVDSVRRNVRLSESLYTVKS 147 (378)
Q Consensus 125 ~~Wl~dci~~g~~l~e~~Y~~~~ 147 (378)
|+|+-.|--..+.+.-.-|.+..
T Consensus 233 pewvracevekrivgvrgfylda 255 (290)
T 4gns_A 233 PEWVRACEVEKRIVGVRGFYLDA 255 (290)
T ss_dssp THHHHHHHHTTSCCCSGGGBTTS
T ss_pred HHHHHHHhhhheeeeeeeEEEcc
Confidence 99999998877777766665544
No 74
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=95.42 E-value=0.0026 Score=67.18 Aligned_cols=74 Identities=24% Similarity=0.287 Sum_probs=0.0
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc---chhhhhcCCCCccchhhHHhhhhHh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAKEK 273 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~---s~~~~l~~~~~IVt~~WI~dcik~~ 273 (378)
...|.|.+|.|...++. .|+.++.+|+.+||++.++ +..+++|||+... .+++....++.|++.+|+++.+..+
T Consensus 585 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~s--VSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~~~ 661 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDS--VSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEK 661 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCc--ccCCeeEEEECCCCChHHHHHHHCCCeEEeHHHHHHHHhcC
Confidence 45699999999656666 7899999999999999999 7999999999873 3344455789999999999999764
No 75
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=94.56 E-value=0.0062 Score=64.30 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc---chhhhhcCCCCccchhhHHhhhh
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAK 271 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~---s~~~~l~~~~~IVt~~WI~dcik 271 (378)
...|.|.+|.|...++.-.|+.++++|+.+||++.++ +..+++|||++.. .+++....++.|++.+|+++.+.
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~s--VSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGS--VSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCc--ccCceeEEEECCCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 4569999999955565446888999999999999999 7999999999873 33444557899999999998763
No 76
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=92.28 E-value=0.11 Score=49.75 Aligned_cols=87 Identities=7% Similarity=0.005 Sum_probs=56.3
Q ss_pred ccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEeccc---c----hhhhhcCCCCccchhhHHhhhhH
Q 017048 200 LSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---S----VQKYMGHSNNLVTPVWVLKTAKE 272 (378)
Q Consensus 200 F~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~---s----~~~~l~~~~~IVt~~WI~dcik~ 272 (378)
+....+++ ++ .+.+..|++.++..||.++ .| ..+.|||||+.+. + .-..+-.++.||++.|+.+..+.
T Consensus 113 W~P~Vl~~-Ss--ke~~~~L~~~L~~LGik~v-~~-~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 113 WRSMCIQF-DN--PEMLSQWASNLNLLGIPTG-LR-DSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTV 187 (325)
T ss_dssp ECCCCEEE-SC--HHHHHHHHHHHHTTTCCEE-SS-CCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTC
T ss_pred EeeeEEEe-cC--HHHHHHHHHHHHHcCCEEE-Ec-cCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHh
Confidence 34455555 32 2345669999999999999 75 5777999999752 2 22225579999999999987642
Q ss_pred h-h-hhhHHhhhHhHHHHHhHH
Q 017048 273 K-H-VQRLVHISADLARQVGMM 292 (378)
Q Consensus 273 ~-~-~qr~~~~s~dl~~~~~~~ 292 (378)
. . ++. -.-.+|-..++|-.
T Consensus 188 e~~~~~~-~~~wPdp~dflP~i 208 (325)
T 3huf_A 188 KESVIED-ASLMPDALECFKNI 208 (325)
T ss_dssp TTCCCCT-TSSHHHHHHHHHHH
T ss_pred hhhhhhc-ccCCCChHHcCCCC
Confidence 1 1 111 12344556666654
No 77
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=91.56 E-value=0.11 Score=44.68 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=47.2
Q ss_pred CCCcc-ceEEEEcccCHH-----HH-------HHHHHHHHHhcCccCCCCCCccceEEEeeecCc--------hhhHhhh
Q 017048 55 NAPFS-GLVICVTGLSKE-----AR-------KQVMEATERLGGQYSPDLHPQCTHLVVQSFGGR--------KFEHALK 113 (378)
Q Consensus 55 ~~~F~-g~~I~vsG~~~~-----~r-------~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~~--------Ky~~A~k 113 (378)
.++|. +.+|+|-+.+++ .+ ..+++.+..+|+.+.+.++.++||+|+..+-.. -+..|.+
T Consensus 56 Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Dil~~A~~ 135 (160)
T 3qbz_A 56 KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKK 135 (160)
T ss_dssp HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSHHHHHHH
T ss_pred HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCcccccCCchhHHHHHHH
Confidence 45788 899999876532 12 445678889999999999999999999776222 2445554
Q ss_pred hcCCCceEEEE
Q 017048 114 HGSRNGLYIVT 124 (378)
Q Consensus 114 ~~~~~gi~IV~ 124 (378)
.+++|=+
T Consensus 136 ----~~mKVW~ 142 (160)
T 3qbz_A 136 ----NYMKVWS 142 (160)
T ss_dssp ----TTCEEEE
T ss_pred ----cCceecc
Confidence 5777733
No 78
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=88.47 E-value=0.47 Score=39.69 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCccCCCCCCccceEEEeeecC--------chhhHhhhhcCCCceEEEEeehhh
Q 017048 72 ARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--------RKFEHALKHGSRNGLYIVTLGWFV 129 (378)
Q Consensus 72 ~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~--------~Ky~~A~k~~~~~gi~IV~~~Wl~ 129 (378)
.++.|++.+..+||++.+.++..+||+|+..+-. +-+..|.+ .|++|=+.+=+.
T Consensus 31 ~~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~----~~mKIWs~EKl~ 92 (134)
T 3oq4_A 31 RRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKK----NYMKVWSYEKAA 92 (134)
T ss_dssp HHHHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHH----TTCEEEEHHHHH
T ss_pred HHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHH----cCCeeeeHHHHH
Confidence 5678899999999999999999999999976522 22345555 588885544443
No 79
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=86.95 E-value=0.3 Score=42.00 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=36.1
Q ss_pred Ccccc-ccceeecchhhH-----------HHHHHHHHHHhhccceeeeeeeeccCCceEEecc
Q 017048 197 NSTLS-GCSMYVDSDVSE-----------ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE 247 (378)
Q Consensus 197 ~~lF~-G~~fyl~~gfs~-----------~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~ 247 (378)
-.+|. ++.||||+.-.+ ...+.|++.+...||+++.- .+.+|||||+..
T Consensus 56 Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~F--Fd~~VTiVIT~R 116 (160)
T 3qbz_A 56 KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQF--FDTTVTIVITRR 116 (160)
T ss_dssp HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESS--CCTTCCEEEESS
T ss_pred HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeee--ccCCeEEEEecC
Confidence 45787 899999643110 12244667788999999987 699999999986
No 80
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=86.60 E-value=0.69 Score=39.43 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=47.9
Q ss_pred CCCCCc-cceEEEEccc--C----------HHHHHHHHHHHHHhcCccCCCCCCccceEEEeeecC--------chhhHh
Q 017048 53 PANAPF-SGLVICVTGL--S----------KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--------RKFEHA 111 (378)
Q Consensus 53 ~~~~~F-~g~~I~vsG~--~----------~~~r~~L~~lI~~~GG~~~~~lt~~~THLI~~~~~~--------~Ky~~A 111 (378)
.=.+|+ ++-+|+|-.- . +..++.|++.+..+||++.+.++..+||+|+..+-. +-+..|
T Consensus 16 ~WrkIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rA 95 (151)
T 3oq0_A 16 PRGSHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRA 95 (151)
T ss_dssp -----CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHH
T ss_pred cHHHHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHH
Confidence 345677 7778888532 2 124466788999999999999999999999976522 223455
Q ss_pred hhhcCCCceEEEEeehhhh
Q 017048 112 LKHGSRNGLYIVTLGWFVD 130 (378)
Q Consensus 112 ~k~~~~~gi~IV~~~Wl~d 130 (378)
.+ .+++|=+.+=+..
T Consensus 96 r~----~~mKIWs~EKl~R 110 (151)
T 3oq0_A 96 KK----NYMKVWSYEKAAR 110 (151)
T ss_dssp HH----TTCEEEEHHHHHH
T ss_pred HH----cCCeeecHHHHHH
Confidence 55 6888855544443
No 81
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=85.22 E-value=1.2 Score=37.98 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=34.9
Q ss_pred ccc-cccceeecch-h---h-------HHHHHHHHHHHhhccceeeeeeeeccCCceEEecc
Q 017048 198 STL-SGCSMYVDSD-V---S-------EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE 247 (378)
Q Consensus 198 ~lF-~G~~fyl~~g-f---s-------~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~ 247 (378)
.+. ....||||.. . + +..++.|++.+...||+|+.- ++.+|||||+..
T Consensus 19 kIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~F--Fd~~VTiIITrR 78 (151)
T 3oq0_A 19 SHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQF--FDTTVTIVITRR 78 (151)
T ss_dssp --CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESS--CCTTCCEEEESS
T ss_pred HHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeee--cCCceEEEEeCC
Confidence 344 6678899743 1 1 123466778899999999986 699999999986
No 82
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=80.37 E-value=1 Score=41.73 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHhhccceeeeeeeeccCCceEEecc-cchhhh---hcCCCC--ccchhhHHhhhhH
Q 017048 221 EAATNEGATLVNQWFVGCGASYVVCEE-DSVQKY---MGHSNN--LVTPVWVLKTAKE 272 (378)
Q Consensus 221 ~lI~~~GG~vv~~~~~~~~vTHVV~~~-~s~~~~---l~~~~~--IVt~~WI~dcik~ 272 (378)
+.++..|=++++..-....++|++.+. -...+| ++.++. |++|.||.+|++.
T Consensus 41 ~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ 98 (256)
T 3t7k_A 41 EILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQ 98 (256)
T ss_dssp HHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHH
T ss_pred HHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHH
Confidence 456788999998720125899999998 344555 566665 9999999999988
No 83
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.89 E-value=1.5 Score=38.37 Aligned_cols=73 Identities=21% Similarity=0.389 Sum_probs=49.6
Q ss_pred ccccccceeecch-----hhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecc----cchhhh---hcCCCCccchhh
Q 017048 198 STLSGCSMYVDSD-----VSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE----DSVQKY---MGHSNNLVTPVW 265 (378)
Q Consensus 198 ~lF~G~~fyl~~g-----fs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~----~s~~~~---l~~~~~IVt~~W 265 (378)
.=.+|.++++.+- +++ -++.+.+.--|+.-.... ..-+.||.||.+ .+-... -..++.||.|+|
T Consensus 160 tdmsgitvclgpldplkeisd---lqisqclshigarplqrh-vaidtthfvcndldneesneelirakhnnipivrpew 235 (290)
T 4gns_A 160 TDMSGITVCLGPLDPLKEISD---LQISQCLSHIGARPLQRH-VAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEW 235 (290)
T ss_dssp TCCTTCCEEECCCCGGGTCCH---HHHHHHHHHTTCCCCBSS-CCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHH
T ss_pred ccccCceEEecCCChhhhhhh---ccHHHHHHHhCCchhhhe-eeeecceeeecCCCcccchHHHHhhhccCCCccCHHH
Confidence 3358899998431 222 235666777788766553 567789999986 122222 347899999999
Q ss_pred HHhhhhHhh
Q 017048 266 VLKTAKEKH 274 (378)
Q Consensus 266 I~dcik~~~ 274 (378)
+-.|--++.
T Consensus 236 vracevekr 244 (290)
T 4gns_A 236 VRACEVEKR 244 (290)
T ss_dssp HHHHHHTTS
T ss_pred HHHHhhhhe
Confidence 999987764
No 84
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=75.93 E-value=3.1 Score=34.78 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhccceeeeeeeeccCCceEEecc
Q 017048 214 ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE 247 (378)
Q Consensus 214 ~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~ 247 (378)
..++.|++.+...||+|+.- .+.+|||||+..
T Consensus 30 k~~~llk~~f~~LGa~I~~F--Fd~~VTiiITrR 61 (134)
T 3oq4_A 30 KRRDLLKRGFLTLGAQITQF--FDTTVTIVITRR 61 (134)
T ss_dssp HHHHHHHHHHHHTTCEEESS--CCTTCCEEEESS
T ss_pred HHHHHHHHHHHHcCCEEeee--cCCceEEEEeCC
Confidence 35677888999999999986 699999999986
No 85
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=73.22 E-value=1.3 Score=36.21 Aligned_cols=34 Identities=12% Similarity=0.014 Sum_probs=28.5
Q ss_pred CccccccceeecchhhHHHHHHHHHHHhhccceeeee
Q 017048 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQ 233 (378)
Q Consensus 197 ~~lF~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~ 233 (378)
..+|+|.+|+| ++..+.++|..+|..+||.+..-
T Consensus 11 ~~LF~GKtFvF---Ln~KQ~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 11 KSIFKDKVFLF---LNAKQYKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp SCSSTTCEEEE---SCSSTHHHHHHHHHHTTCEEECC
T ss_pred HhhccCCEEEE---eCHHHHHHHHHHHHhcCceEEec
Confidence 57999999999 34456788999999999998754
No 86
>3rt3_C NS1, NS1B, non-structural protein 1; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Influenza b virus} PDB: 1xeq_A 3sdl_A 3r66_A
Probab=27.28 E-value=55 Score=24.85 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=23.8
Q ss_pred hhHHhhhhHhhhhhHHhhhH-hHHHHHhHHHHhh
Q 017048 264 VWVLKTAKEKHVQRLVHISA-DLARQVGMMLENI 296 (378)
Q Consensus 264 ~WI~dcik~~~~qr~~~~s~-dl~~~~~~~le~~ 296 (378)
-=|+||.+.-.||+.++|+- |-...+-..|+--
T Consensus 25 agil~cy~r~swq~~ldypgq~rl~rlk~kl~s~ 58 (109)
T 3rt3_C 25 AGILECYERFSWQRALDYPGQDRLHRLKRKLESR 58 (109)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhccccCCCchhHHHHHHHHHHHh
Confidence 45899999999999999975 4444444555543
No 87
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=21.45 E-value=1.4e+02 Score=27.42 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=66.4
Q ss_pred ccccceeecchhhHHHHHHHHHHHhhccceeeeeeeeccCCceEEecccchhh----hhcCCCCccchh-hHHhhhhHhh
Q 017048 200 LSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQK----YMGHSNNLVTPV-WVLKTAKEKH 274 (378)
Q Consensus 200 F~G~~fyl~~gfs~~~~~~L~~lI~~~GG~vv~~~~~~~~vTHVV~~~~s~~~----~l~~~~~IVt~~-WI~dcik~~~ 274 (378)
-.|.+..+|++++.. .++.+++..|-- +|-+ --.--|+.+++.+.+++ |..+++.+-+.. |++.++..+.
T Consensus 12 ~~GlT~v~dkglg~~---~~~d~Le~~g~y-ID~l-Kfg~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGTl~E~~~~qg~ 86 (251)
T 1qwg_A 12 QRGLTVVLDKGLPPK---FVEDYLKVCGDY-IDFV-KFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK 86 (251)
T ss_dssp CCCCEEEEESSCCHH---HHHHHHHHHGGG-CSEE-EECTTGGGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTTC
T ss_pred ccCeeEEecCCCCHH---HHHHHHHHhhhh-cceE-EecCceeeecCHHHHHHHHHHHHHcCCeEECCcHHHHHHHHcCc
Confidence 368888999888754 466666666544 3332 23444677777654443 346888888888 6777776664
Q ss_pred hhhHHhhhHhHHHHHhHHHHhhhccchhhhhcCCCCCCCchhhhhhccHHHHHHHHHhhhhh
Q 017048 275 VQRLVHISADLARQVGMMLENIQNGIAREEINGGNVPEDAQSCKNKISQEKRQQTVNLAKNG 336 (378)
Q Consensus 275 ~qr~~~~s~dl~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 336 (378)
...++ +.+++ .++.-.||+-+.+. ++.++|.++++.|++.
T Consensus 87 ~~~yl----~~~k~---------lGf~~iEiS~G~i~---------l~~~~~~~~I~~~~~~ 126 (251)
T 1qwg_A 87 FDEFL----NECEK---------LGFEAVEISDGSSD---------ISLEERNNAIKRAKDN 126 (251)
T ss_dssp HHHHH----HHHHH---------HTCCEEEECCSSSC---------CCHHHHHHHHHHHHHT
T ss_pred HHHHH----HHHHH---------cCCCEEEECCCccc---------CCHHHHHHHHHHHHHC
Confidence 43332 12222 34444555554442 5777888888877654
Done!