BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017049
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 142/363 (39%), Gaps = 76/363 (20%)
Query: 21 LTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWP 80
+++G PP+ F FDTGS WV + C+ ++KP ++ +
Sbjct: 18 ISIGTPPESFKVIFDTGSSNLWVSS-SHCSAQACSNHNKFKPRQSSTYVETGKTV----- 71
Query: 81 NPPRCKHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGP 140
++ YG GG G L D + GS N L G +Q PGP
Sbjct: 72 --------------DLTYGTGGMR-GILGQDT--VSVGGGSDPNQEL----GESQTEPGP 110
Query: 141 L---SPPDTAGVLGL------GRGRISIVSQLREYGLI-RNVIGHCI---GQNGRGVLFL 187
+P D G+LGL G + + + L+ +++ + G NG V+
Sbjct: 111 FQAAAPFD--GILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLG 168
Query: 188 G-DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTS 246
G D + + W P+ K++ + + +G++ + I D+G TS
Sbjct: 169 GVDNSHYTGSIHWIPVTAE----KYWQVALDGITVNGQTAACEGCQAIVDTG------TS 218
Query: 247 RVYQEIVSL--IMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRN 304
++ + +L IM+D+ + + +G ++FT N
Sbjct: 219 KIVAPVSALANIMKDIGAS---------------ENQGEMMGNCASVQSLPDITFT--IN 261
Query: 305 SVRLVVPPEAYLVISGRKNVCLGIL--NGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIG 362
V+ +PP AY I G + C L +G + E I G++F+++ IYD ++G
Sbjct: 262 GVKQPLPPSAY--IEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVG 319
Query: 363 WKP 365
+ P
Sbjct: 320 FAP 322
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/381 (20%), Positives = 129/381 (33%), Gaps = 88/381 (23%)
Query: 34 FDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRC-AALHWPNP----PRC--- 85
D L W CD +PP + +PCS+P C A +P P P C
Sbjct: 28 LDVAGPLVWSTCDG-----GQPPAE--------IPCSSPTCLLANAYPAPGCPAPSCGSD 74
Query: 86 KHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNG----SVFNVPLTFGCGYNQHNPGPL 141
KH Y G + G+L F ++G S NV + C ++
Sbjct: 75 KHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLAS-- 132
Query: 142 SPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVP----SSGV 197
P + GV GL +++ +Q+ + N C+ G GV G G VP + +
Sbjct: 133 LPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSM 192
Query: 198 AWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGA------------SYAYFT 245
+TP++ HYI S +S + D + GA Y
Sbjct: 193 PYTPLVTKGGSPAHYI--------SARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLR 244
Query: 246 SRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRR-- 303
VY+ ++ + L AP + + E P + + +
Sbjct: 245 PDVYRPLMDAFTKALAAQHANGAP---------------VARAVEAVAPFGVCYDTKTLG 289
Query: 304 NSVRLVVPPEAYLVISG----------------RKNVCLGILNGSEAEVGENN----IIG 343
N++ P L + G + C+ + G+ I+G
Sbjct: 290 NNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILG 349
Query: 344 EIFMQDKMVIYDNEKQRIGWK 364
M+D ++ +D EK+R+G+
Sbjct: 350 GAQMEDFVLDFDMEKKRLGFS 370
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 140/380 (36%), Gaps = 68/380 (17%)
Query: 34 FDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCA-ALHWPNP----PRC--- 85
D L W C+ G P E + CS+P C A +P P P C
Sbjct: 30 LDVAGLLVWSTCE----GGQSPAE---------IACSSPTCLLANAYPAPGCPAPSCGSD 76
Query: 86 KHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNG----SVFNVPLTFGCGYNQHNPGPL 141
+H Y G + G+L F ++G S NV + C ++
Sbjct: 77 RHDKPCTAYPSNPVTGACAAGSLFHTRFAANTTDGNKPVSEVNVRVLAACAPSKLLAS-- 134
Query: 142 SPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVP----SSGV 197
P + GV GL +++ SQ+ + N C+ G GV G G +P + +
Sbjct: 135 LPRGSTGVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVAIFGGGPLPWPQFTQSM 194
Query: 198 AWTPMLQNSADLKHYILGPAELLYSGK----SCGLKDLTLIFDSGASYAYFTSRVYQEIV 253
+TP++ HYI + + + + L ++ + Y VY+ +V
Sbjct: 195 DYTPLVAKGGSPAHYISARSIKVENTRVPISERALATGGVMLSTRLPYVLLRRDVYRPLV 254
Query: 254 SLIMRDLIGTPLKLAPDDKTL-PICWRGPF------KALGQ-VTEYFKPLALS------- 298
+ L P AP + + P+ PF K LG Y+ P L
Sbjct: 255 DAFTKALAAQPANGAPVARAVKPV---APFELCYDTKTLGNNPGGYWVPNVLLELDGGSD 311
Query: 299 -FTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNE 357
+NS+ V P A + K V G +GS V I+G M+D ++ +D E
Sbjct: 312 WAMTGKNSMVDVKPGTACVAFVEMKGVDAG--DGSAPAV----ILGGAQMEDFVLDFDME 365
Query: 358 KQRIGWKPEDCNTLLSLNHF 377
K+R+G+ L L HF
Sbjct: 366 KKRLGF--------LRLPHF 377
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 73/196 (37%), Gaps = 31/196 (15%)
Query: 34 FDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRC-AALHWPNP----PRC--- 85
D L W C +PP + +PCS+P C A +P P P C
Sbjct: 28 LDVAGPLVWSTCKG-----GQPPAE--------IPCSSPTCLLANAYPAPGCPAPSCGSD 74
Query: 86 KHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNG----SVFNVPLTFGCGYNQHNPGPL 141
KH Y G + G+L F ++G S NV + C ++
Sbjct: 75 KHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLAS-- 132
Query: 142 SPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLGDGKVP----SSGV 197
P + GV GL +++ +Q+ + N C+ G GV G G VP + +
Sbjct: 133 LPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSM 192
Query: 198 AWTPMLQNSADLKHYI 213
+TP++ HYI
Sbjct: 193 PYTPLVTKGGSPAHYI 208
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 27/144 (18%)
Query: 21 LTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWP 80
+T+G P K F+ DFDTGS W+ CT C + +Y P+++
Sbjct: 21 VTIGTPGKKFNLDFDTGSSDLWI-ASTLCTNC-GSRQTKYDPNQS--------------- 63
Query: 81 NPPRCKHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGP 140
+ D + I YGDG S+ G L D L G + T +
Sbjct: 64 ----STYQADGRTWSISYGDGSSASGILAKDNVNL----GGLLIKGQTIELAKREAASFA 115
Query: 141 LSPPDTAGVLGLGRGRISIVSQLR 164
P D G+LGLG I+ V ++
Sbjct: 116 SGPND--GLLGLGFDTITTVRGVK 137
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 27/144 (18%)
Query: 21 LTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWP 80
+T+G P K F+ DFDTGS W+ CT C + +Y P+++
Sbjct: 21 VTIGTPGKKFNLDFDTGSSDLWI-ASTLCTNC-GSGQTKYDPNQS--------------- 63
Query: 81 NPPRCKHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGP 140
+ D + I YGDG S+ G L D L G + T +
Sbjct: 64 ----STYQADGRTWSISYGDGSSASGILAKDNVNL----GGLLIKGQTIELAKREAASFA 115
Query: 141 LSPPDTAGVLGLGRGRISIVSQLR 164
P D G+LGLG I+ V ++
Sbjct: 116 SGPND--GLLGLGFDTITTVRGVK 137
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 137/363 (37%), Gaps = 72/363 (19%)
Query: 18 AVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAAL 77
A ++T+G + F+ DTGS WV DA T C KP +P ++ C + +
Sbjct: 15 AADITIGSNKQKFNVIVDTGSSDLWVP-DASVT-CDKP-----RPGQSADFC---KGKGI 64
Query: 78 HWPNPPRCKHPNDQCDYEIEYGDGGSSIGALVTD--------LFPLRFSNGSVFNVPL-T 128
+ P N + I YGDG SS G L D + F++ + ++P
Sbjct: 65 YTPKSSTTSQ-NLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITKTSIPQGI 123
Query: 129 FGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRGVLFLG 188
G GY + D V +G I+ Y L N GQ ++F G
Sbjct: 124 LGIGYKTNEAA--GDYDNVPVTLKNQGVIA----KNAYSLYLNSPNAATGQ----IIFGG 173
Query: 189 DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRV 248
K SG + + +L+ + L GK+ ++ ++ DSG + Y V
Sbjct: 174 VDKAKYSGSLIAVPVTSDRELR---ITLNSLKAVGKNIN-GNIDVLLDSGTTITYLQQDV 229
Query: 249 YQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQ-----VTEYFKPLALSFTNRR 303
Q+I+ ++ K+ GQ VT+ + F N
Sbjct: 230 AQDIID----------------------AFQAELKSDGQGHTFYVTDCQTSGTVDF-NFD 266
Query: 304 NSVRLVVPPEAYLVISGRKN-----VCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEK 358
N+ ++ VP + N C +L S+A NI+G+ F++ ++YD +
Sbjct: 267 NNAKISVPASEFTAPLSYANGQPYPKCQLLLGISDA-----NILGDNFLRSAYLVYDLDD 321
Query: 359 QRI 361
+I
Sbjct: 322 DKI 324
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 81/376 (21%), Positives = 130/376 (34%), Gaps = 65/376 (17%)
Query: 35 DTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRC------AALHWPNPPRCKHP 88
D G WV CD T Y+P V C +C A N PR
Sbjct: 40 DLGGRFLWVDCDQNYVSST------YRP----VRCRTSQCSLSGSIACGDCFNGPRPGCN 89
Query: 89 NDQCDY-----EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVP-LTFGCGYNQHNPGPLS 142
N+ C I GG +V+ S+G V VP F C P L
Sbjct: 90 NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCA-----PTSLL 144
Query: 143 PPDTAGVLG---LGRGRISIVSQLREYGLIRNVIGHCI--GQNGRGVLFLGDGK------ 191
+GV+G LGR RI++ SQ + C+ + V+ G+
Sbjct: 145 QNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPN 204
Query: 192 --VPSSGVAWTPMLQNSADLK----------HYILGPAELLYSGKSCGLKDLTLIFDSGA 239
V + +TP+L N Y +G + + K L L S
Sbjct: 205 IIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAG 264
Query: 240 SYAYFTSRV--YQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLAL 297
S + Y + + I + + +K + + PF A L+
Sbjct: 265 LGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNI---LST 321
Query: 298 SFTNRRNSVRLVVPPEAYL-VISGRKN--------VCLGILNGSEAEVGENNIIGEIFMQ 348
S+ LV+ E+ + I+G + VCLG+++G + + + +IG ++
Sbjct: 322 RLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGG-SNLRTSIVIGGHQLE 380
Query: 349 DKMVIYDNEKQRIGWK 364
D +V +D R+G+
Sbjct: 381 DNLVQFDLATSRVGFS 396
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 81/376 (21%), Positives = 130/376 (34%), Gaps = 65/376 (17%)
Query: 35 DTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRC------AALHWPNPPRCKHP 88
D G WV CD T Y+P V C +C A N PR
Sbjct: 40 DLGGRFLWVDCDQNYVSST------YRP----VRCRTSQCSLSGSIACGDCFNGPRPGCN 89
Query: 89 NDQCDY-----EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVP-LTFGCGYNQHNPGPLS 142
N+ C I GG +V+ S+G V VP F C P L
Sbjct: 90 NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCA-----PTSLL 144
Query: 143 PPDTAGVLG---LGRGRISIVSQLREYGLIRNVIGHCI--GQNGRGVLFLGDGK------ 191
+GV+G LGR RI++ SQ + C+ + V+ G+
Sbjct: 145 QNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPN 204
Query: 192 --VPSSGVAWTPMLQNSADLK----------HYILGPAELLYSGKSCGLKDLTLIFDSGA 239
V + +TP+L N Y +G + + K L L S
Sbjct: 205 IIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAG 264
Query: 240 SYAYFTSRV--YQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLAL 297
S + Y + + I + + +K + + PF A L+
Sbjct: 265 LGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNI---LST 321
Query: 298 SFTNRRNSVRLVVPPEAYL-VISGRKN--------VCLGILNGSEAEVGENNIIGEIFMQ 348
S+ LV+ E+ + I+G + VCLG+++G + + + +IG ++
Sbjct: 322 RLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGG-SNLRTSIVIGGHQLE 380
Query: 349 DKMVIYDNEKQRIGWK 364
D +V +D R+G+
Sbjct: 381 DNLVQFDLATSRVGFS 396
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 304 NSVRLVVPPEAYLVISGRKNVCLGILNGSE--AEVGENNIIGEIFMQDKMVIYDNEKQRI 361
N V+ VPP AY++ S + C+ G E GE I+G++F++ ++D ++
Sbjct: 263 NGVQYPVPPSAYILQS--EGSCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQV 320
Query: 362 GWKP 365
G P
Sbjct: 321 GLAP 324
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 304 NSVRLVVPPEAYLVISGRKNVCLGILNGSE--AEVGENNIIGEIFMQDKMVIYDNEKQRI 361
N V+ VPP AY++ S + C+ G E GE I+G++F++ ++D ++
Sbjct: 263 NGVQYPVPPSAYILQS--EGSCISGFQGMNVPTESGELWILGDVFIRQYFTVFDRANNQV 320
Query: 362 GWKP 365
G P
Sbjct: 321 GLAP 324
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 78/372 (20%), Positives = 133/372 (35%), Gaps = 91/372 (24%)
Query: 21 LTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWP 80
+++G PP+ F FDTGS WV V C + C +
Sbjct: 18 ISIGTPPQNFLVLFDTGSSNLWVPS---------------------VYCQSQACTSHSRF 56
Query: 81 NPPRCK-HPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVP-LTFGCGYNQHNP 138
NP + + + ++YG G +T F VP FG N+ P
Sbjct: 57 NPSESSTYSTNGQTFSLQYGSGS------LTGFFGYDTLTVQSIQVPNQEFGLSENE--P 108
Query: 139 GP-LSPPDTAGVLGLGRGRISI-------VSQLREYGLIRNV----IGHCIGQNGRGVLF 186
G G++GL +S+ ++E L V + + G +G V+F
Sbjct: 109 GTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVF 168
Query: 187 LG-DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL--KDLTLIFDSGASYAY 243
G D + + + W P+ Q ++ +G E L G++ G + I D+G S
Sbjct: 169 GGVDSSLYTGQIYWAPVTQE----LYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLL- 223
Query: 244 FTSRVYQEIVSLIMR------DLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLAL 297
V Q+ +S +++ D G L + LP
Sbjct: 224 ---TVPQQYMSALLQATGAQEDEYGQFLVNCNSIQNLP---------------------- 258
Query: 298 SFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENN-----IIGEIFMQDKMV 352
S T N V +PP +Y ++S +G+ + N I+G++F++
Sbjct: 259 SLTFIINGVEFPLPPSSY-ILSNNGYCTVGV---EPTYLSSQNGQPLWILGDVFLRSYYS 314
Query: 353 IYDNEKQRIGWK 364
+YD R+G+
Sbjct: 315 VYDLGNNRVGFA 326
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 91/250 (36%), Gaps = 43/250 (17%)
Query: 18 AVNLTVGKPPKLFDFDFDTGSDLTWV-----QCDAPCTGCTKPPEKQYKPHKNIVPCSNP 72
A ++TVG + + DTGS WV C + T KQ + P +
Sbjct: 15 AADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYD---PSGSS 71
Query: 73 RCAALHWPNPPRCKHPNDQCDYEIEYGDGGSSIGALVTDLF---PLRFSNGSVFNVPLT- 128
L+ P ++I YGDG SS G L D + N + +V T
Sbjct: 72 ASQDLNTP-------------FKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTS 118
Query: 129 -----FGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRG 183
G GY + G D V +G I+ Y L N GQ
Sbjct: 119 IDQGILGVGYKTNEAG--GSYDNVPVTLKKQGVIA----KNAYSLYLNSPDAATGQ---- 168
Query: 184 VLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAY 243
++F G SG + + +L+ LG E+ SGK+ ++ ++ DSG + Y
Sbjct: 169 IIFGGVDNAKYSGSLIALPVTSDRELR-ISLGSVEV--SGKTINTDNVDVLLDSGTTITY 225
Query: 244 FTSRVYQEIV 253
+ +I+
Sbjct: 226 LQQDLADQII 235
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 319 SGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 366
SG + CLG + S + +G + I G+IF++ + V++D++ ++G+ P+
Sbjct: 277 SGDGSTCLGGIQ-SNSGIGFS-IFGDIFLKSQYVVFDSDGPQLGFAPQ 322
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 90/250 (36%), Gaps = 43/250 (17%)
Query: 18 AVNLTVGKPPKLFDFDFDTGSDLTWV-----QCDAPCTGCTKPPEKQYKPHKNIVPCSNP 72
A ++TVG + + DTGS WV C + T KQ + P +
Sbjct: 15 AADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKGTYD---PSGSS 71
Query: 73 RCAALHWPNPPRCKHPNDQCDYEIEYGDGGSSIGALVTDLF---PLRFSNGSVFNVPLT- 128
L+ P + I YGDG SS G L D + N + +V T
Sbjct: 72 ASQDLNTP-------------FSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTS 118
Query: 129 -----FGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQNGRG 183
G GY + G D V +G I+ Y L N GQ
Sbjct: 119 IDQGILGVGYKTNEAG--GSYDNVPVTLKKQGVIA----KNAYSLYLNSPDSATGQ---- 168
Query: 184 VLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAY 243
++F G SG + + +L+ LG E+ SGK+ ++ ++ DSG + Y
Sbjct: 169 IIFGGVDNAKYSGSLIALPVTSDRELR-ISLGSVEV--SGKTINTDNVDVLLDSGTTITY 225
Query: 244 FTSRVYQEIV 253
+ +I+
Sbjct: 226 LQQDLADQII 235
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 96/247 (38%), Gaps = 40/247 (16%)
Query: 143 PPDTAGVLGLGRGRISIVSQLREYGLIRNVIGHCIGQ--NGRGVLFLGDGKVPSS----- 195
P +T GV GLG IS+ +QL + ++ C+ + +G + GD P++
Sbjct: 152 PRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDA--PNNMRQFQ 209
Query: 196 ------GVAWTPM---LQ-------NSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGA 239
+A+TP+ LQ NS + + + P + S T+I +
Sbjct: 210 NQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMI-STST 268
Query: 240 SYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP--ICWRGPFKALGQVTEYFKPLAL 297
+ VYQ + + L K A P +C+ ++ Y P
Sbjct: 269 PHMVLQQSVYQAFTQVFAQQLP----KQAQVKSVAPFGLCFNS-----NKINAY--PSVD 317
Query: 298 SFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNE 357
++ N + E +V + CLG++NG E +G +++ +V++D
Sbjct: 318 LVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEIT-LGARQLEENLVVFDLA 376
Query: 358 KQRIGWK 364
+ R+G+
Sbjct: 377 RSRVGFS 383
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 78/358 (21%), Positives = 133/358 (37%), Gaps = 74/358 (20%)
Query: 23 VGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNP 82
+G + F F FDTGS WV V C + C+ H +
Sbjct: 22 IGTNKQPFMFIFDTGSANLWVPS---------------------VNCDSIGCSTKHLYDA 60
Query: 83 PRCK-HPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPL 141
K + D EI YG G+ G D+ L ++P F + + P+
Sbjct: 61 SASKSYEKDGTKVEISYG-SGTVRGYFSKDVISL-----GDLSLPYKFIEVTDADDLEPI 114
Query: 142 -SPPDTAGVLGLGRGRISI------VSQLREYGLIRNVI-GHCIGQNGRGVLFLGDGKVP 193
S + G+LGLG +SI V +L++ I N + + + + V +L G +
Sbjct: 115 YSGSEFDGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLPVHDKHVGYLTIGGIE 174
Query: 194 SSGVAWTPMLQNSADLKHYILGPAEL-LYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252
S P+ L H + +L ++ GK ++ + DSG S T
Sbjct: 175 SDFYE-GPLTYEK--LNHDLYWQIDLDIHFGKYV-MQKANAVVDSGTS----TITAPTSF 226
Query: 253 VSLIMRDLIGTPLKLAP------DDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSV 306
++ RD+ + P D+ LP L F +R N
Sbjct: 227 LNKFFRDMNVIKVPFLPLYVTTCDNDDLP--------------------TLEFHSRNN-- 264
Query: 307 RLVVPPEAYLVISGRKNVCLGILNGSEAEVGENN-IIGEIFMQDKMVIYDNEKQRIGW 363
+ + PE Y+ + L +L ++ +N I+G+ FM+ ++D EK+ +G+
Sbjct: 265 KYTLEPEFYMDPLSDIDPALCMLYILPVDIDDNTFILGDPFMRKYFTVFDYEKESVGF 322
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 18/143 (12%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICW---RGPFKALGQVTE 290
I DSG + +V+ +V + R + + CW P+ +++
Sbjct: 224 IVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISI 283
Query: 291 YFKPLALSFTNRRNSVRLVVPPEAY---LVISGRKNVC--LGILNGSEAEVGENNIIGEI 345
Y + N S R+ + P+ Y ++ +G C GI + A V IG
Sbjct: 284 YLRD-----ENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNALV-----IGAT 333
Query: 346 FMQDKMVIYDNEKQRIGWKPEDC 368
M+ VI+D ++R+G+ C
Sbjct: 334 VMEGFYVIFDRAQKRVGFAASPC 356
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 20 NLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYK 61
+++G PP+ F FDTGS WV P CT P K +
Sbjct: 28 TISIGSPPQNFTVIFDTGSSNLWV----PSVYCTSPACKTHS 65
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 18 AVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTK 54
A+ +++G P + F FDTGS TWV P GCTK
Sbjct: 21 AIPVSIGTPGQDFLLLFDTGSSDTWV----PHKGCTK 53
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V+ I + + PD L +CW+ P+
Sbjct: 242 IVDSGTTNLRLPKKVFEAAVASIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 298
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 299 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 350
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 351 AVIMEGFYVVFDRARKRIGFAVSACH 376
>pdb|3CXD|H Chain H, Crystal Structure Of Anti-Osteopontin Antibody 23c3 In
Complex With Its Epitope Peptide
pdb|3DSF|H Chain H, Crystal Structure Of Anti-Osteopontin Antibody 23c3 In
Complex With W43a Mutated Epitope Peptide
Length = 216
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 111 DLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIR 170
++PL G++ N +T GC N + P P++ AG LG G V Q Y L
Sbjct: 123 SVYPLAPGGGAISNSMVTLGCLVNGYFPEPVTVTWNAGSLGSGVHTFPAVLQSDLYTLSS 182
Query: 171 NV 172
+V
Sbjct: 183 SV 184
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---------ICWRG---P 281
I DSG + +V++ V I K A + P +CW+ P
Sbjct: 289 IVDSGTTNLRLPKKVFEAAVKSI---------KAASSTEKFPDGFWLGEQLVCWQAGTTP 339
Query: 282 FKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVG 337
+ ++ Y L TN+ S R+ + P+ YL ++ ++ C + ++
Sbjct: 340 WNIFPVISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSS 391
Query: 338 ENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCN 369
++G + M+ V++D ++RIG+ C+
Sbjct: 392 TGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 423
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 288 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 344
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 345 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 396
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 397 AVIMEGFYVVFDRARKRIGFAVSACH 422
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---------ICWRG---P 281
I DSG + +V++ V I K A + P +CW+ P
Sbjct: 289 IVDSGTTNLRLPKKVFEAAVKSI---------KAASSTEKFPDGFWLGEQLVCWQAGTTP 339
Query: 282 FKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVG 337
+ ++ Y L TN+ S R+ + P+ YL ++ ++ C + ++
Sbjct: 340 WNIFPVISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSS 391
Query: 338 ENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCN 369
++G + M+ V++D ++RIG+ C+
Sbjct: 392 TGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 423
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 231 IVDSGTTNLRLPKKVFEAAVKSIKA---ASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 287
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 288 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 339
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 340 AVIMEGFYVVFDRARKRIGFAVSACH 365
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 233 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 289
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 290 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 341
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 342 AVIMEGFYVVFDRARKRIGFAVSACH 367
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 230 IVDSGTTNLRLPKKVFEAAVKSIKA---ASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 286
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 287 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 338
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 339 AVIMEGFYVVFDRARKRIGFAVSACH 364
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 230 IVDSGTTNLRLPKKVFEAAVKSIKA---ASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 286
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 287 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 338
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 339 AVIMEGFYVVFDRARKRIGFAVSACH 364
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 246 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 302
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 303 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 354
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 355 AVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 232 IVDSGTTNLRLPKKVFEAAVKSIKA---ASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 288
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 289 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 340
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 341 AVIMEGFYVVFDRARKRIGFAVSACH 366
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 232 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 288
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 289 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 340
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 341 AVIMEGFYVVFDRARKRIGFAVSACH 366
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 230 IVDSGTTNLRLPKKVFEAAVKSIKA---ASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 286
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 287 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 338
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 339 AVIMEGFYVVFDRARKRIGFAVSACH 364
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 227 IVDSGTTNLRLPKKVFEAAVKSIKA---ASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 283
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 284 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 335
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 336 AVIMEGFYVVFDRARKRIGFAVSACH 361
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 218 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 274
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 275 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 326
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 327 AVIMEGFYVVFDRARKRIGFAVSACH 352
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 246 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 302
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 303 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 354
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 355 AVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 242 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 298
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 299 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 350
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 351 AVIMEGFYVVFDRARKRIGFAVSACH 376
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 229 IVDSGTTNLRLPKKVFEAAVKSIKA---ASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 285
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 286 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 337
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 338 AVIMEGFYVVFDRARKRIGFAVSACH 363
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 230 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 286
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 287 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 338
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 339 AVIMEGFYVVFDRARKRIGFAVSACH 364
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 235 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 291
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 292 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 343
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 344 AVIMEGFYVVFDRARKRIGFAVSACH 369
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 249 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 305
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 306 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 357
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 358 AVIMEGFYVVFDRARKRIGFAVSACH 383
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 246 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 302
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 303 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 354
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 355 AVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 230 IVDSGTTNLRLPKKVFEAAVKSIKA---ASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 286
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 287 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 338
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 339 AVIMEGFYVVFDRARKRIGFAVSACH 364
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 242 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 298
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 299 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 350
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 351 AVIMEGFYVVFDRARKRIGFAVSACH 376
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 246 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 302
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 303 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 354
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 355 AVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 247 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 303
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 304 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 355
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 356 AVIMEGFYVVFDRARKRIGFAVSACH 381
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 252 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 308
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 309 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 360
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 361 AVIMEGFYVVFDRARKRIGFAVSACH 386
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 235 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 291
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 292 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 343
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 344 AVIMEGFYVVFDRARKRIGFAVSACH 369
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 232 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 288
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 289 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 340
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 341 AVIMEGFYVVFDRARKRIGFAVSACH 366
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 245 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 301
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 302 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 353
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 354 AVIMEGFYVVFDRARKRIGFAVSACH 379
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 242 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 298
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 299 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 350
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 351 AVIMEGFYVVFDRARKRIGFAVSACH 376
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 245 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 301
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 302 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 353
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 354 AVIMEGFYVVFDRARKRIGFAVSACH 379
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 246 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 302
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 303 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 354
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 355 AVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 243 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 299
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 300 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 351
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 352 AVIMEGFYVVFDRARKRIGFAVSACH 377
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 266 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 322
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 323 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 374
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 375 AVIMEGFYVVFDRARKRIGFAVSACH 400
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 242 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 298
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 299 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 350
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 351 AVIMEGFYVVFDRARKRIGFAVSACH 376
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 247 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 303
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 304 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 355
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 356 AVIMEGFYVVFDRARKRIGFAVSACH 381
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 266 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 322
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 323 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 374
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 375 AVIMEGFYVVFDRARKRIGFAVSACH 400
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 245 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 301
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 302 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 353
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 354 AVIMEGFYVVFDRARKRIGFAVSACH 379
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 244 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 300
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 301 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 352
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 353 AVIMEGFYVVFDRARKRIGFAVSACH 378
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 23 VGKPPKLFDFDFDTGSDLTWV---QCDAPCTGC 52
+G PP+ F FDTGS WV +C T C
Sbjct: 69 IGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC 101
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 246 IVDSGCTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 302
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C + ++ ++G
Sbjct: 303 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKF---AISQSSTGTVMG 354
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 355 AVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 23 VGKPPKLFDFDFDTGSDLTWV---QCDAPCTGC 52
+G PP+ F FDTGS WV +C T C
Sbjct: 26 IGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC 58
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 23 VGKPPKLFDFDFDTGSDLTWV---QCDAPCTGC 52
+G PP+ F FDTGS WV +C T C
Sbjct: 26 IGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC 58
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 23 VGKPPKLFDFDFDTGSDLTWV---QCDAPCTGC 52
+G PP+ F FDTGS WV +C T C
Sbjct: 26 IGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC 58
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of
The "c" Ring
Length = 333
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 23 VGKPPKLFDFDFDTGSDLTWV---QCDAPCTGC 52
+G PP+ F FDTGS WV +C T C
Sbjct: 19 IGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC 51
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With
Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With
Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 23 VGKPPKLFDFDFDTGSDLTWV---QCDAPCTGC 52
+G PP+ F FDTGS WV +C T C
Sbjct: 26 IGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC 58
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 23 VGKPPKLFDFDFDTGSDLTWV---QCDAPCTGC 52
+G PP+ F FDTGS WV +C T C
Sbjct: 22 IGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC 54
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 23 VGKPPKLFDFDFDTGSDLTWV---QCDAPCTGC 52
+G PP+ F FDTGS WV +C T C
Sbjct: 23 IGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTAC 55
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 23 VGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTK 54
+G PP+ F FDTGS WV P T C++
Sbjct: 23 IGTPPQTFKVIFDTGSANLWV----PSTKCSR 50
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 234 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLP---ICWRG---PFKALGQ 287
I DSG + +V++ V I + + PD L +CW+ P+
Sbjct: 246 IVDSGTTNLRLPKKVFEAAVKSIK---AASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPV 302
Query: 288 VTEYFKPLALSFTNRRNSVRLVVPPEAYLV----ISGRKNVCLGILNGSEAEVGENNIIG 343
++ Y L TN+ S R+ + P+ YL ++ ++ C S++ G ++G
Sbjct: 303 ISLY---LMGEVTNQ--SFRITILPQQYLRPVEDVATSQDDCYKFAI-SQSSCG--TVMG 354
Query: 344 EIFMQDKMVIYDNEKQRIGWKPEDCN 369
+ M+ V++D ++RIG+ C+
Sbjct: 355 AVIMEGFYVVFDRARKRIGFAVSACH 380
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 25/92 (27%)
Query: 21 LTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNP-RCAALHW 79
+TVGK DFDTGS WV D + P + H P S+ + + W
Sbjct: 20 VTVGK--STLHLDFDTGSADLWVFSD-------ELPSSEQTGHDLYTPSSSATKLSGYSW 70
Query: 80 PNPPRCKHPNDQCDYEIEYGDGGSSIGALVTD 111
+I YGDG S+ G + D
Sbjct: 71 ---------------DISYGDGSSASGDVYRD 87
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In
Complex With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 23 VGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN 65
+G P + + DFDTGS WV T ++ + Y P K+
Sbjct: 23 IGTPAQTLNLDFDTGSSDLWVFSSE--TTASEVXQTIYTPSKS 63
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 23 VGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN 65
+G P + + DFDTGS WV T ++ + Y P K+
Sbjct: 23 IGTPAQTLNLDFDTGSSDLWVFSSE--TTASEVXQTIYTPSKS 63
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin
Inhibitor-Aspartic Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description
Of The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 23 VGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN 65
+G P + + DFDTGS WV + T + Y P K+
Sbjct: 23 IGTPAQTLNLDFDTGSSDLWV-FSSETTASEVDGQTIYTPSKS 64
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 23 VGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN 65
+G P + + DFDTGS WV + T + Y P K+
Sbjct: 23 IGTPAQTLNLDFDTGSSDLWV-FSSETTASEVDGQTIYTPSKS 64
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 25/90 (27%)
Query: 18 AVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPR-CAA 76
A+ +++G P + F FDTGS TWV PHK C N C
Sbjct: 21 AIPVSIGTPGQDFYLLFDTGSSDTWV------------------PHKG---CDNSEGCVG 59
Query: 77 LHWPNPPRCKHPNDQCDY--EIEYGDGGSS 104
+ +P + DY I YG GG++
Sbjct: 60 KRFFDPSSSSTFK-ETDYNLNITYGTGGAN 88
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 21 LTVGKPPKLFDFDFDTGSDLTWV 43
+ +G PP+ F FDTGS + WV
Sbjct: 19 IGIGTPPQKFTVIFDTGSSVLWV 41
>pdb|2DTG|C Chain C, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 215
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 6/137 (4%)
Query: 37 GSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEI 96
G L W+ P G TK EK +K + + A +H + K C E
Sbjct: 42 GQGLEWIGWIYPGDGSTKYNEK-FKGKATLTADKSSSTAYMHLSSLTSEKSAVYFCAREW 100
Query: 97 EYGDGGS--SIGALVT---DLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLG 151
Y G+ ++ A T ++PL + + N +T GC + P P++ +G L
Sbjct: 101 AYWGQGTLVTVSAAKTTAPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS 160
Query: 152 LGRGRISIVSQLREYGL 168
G V Q Y L
Sbjct: 161 SGVHTFPAVLQSDLYTL 177
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 20 NLTVGKPPKLFDFDFDTGSDLTWV 43
+ VG PP+ F FDTGS WV
Sbjct: 57 EIGVGTPPQKFTVIFDTGSSNLWV 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,685,151
Number of Sequences: 62578
Number of extensions: 580004
Number of successful extensions: 1889
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 1799
Number of HSP's gapped (non-prelim): 144
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)