Query 017049
Match_columns 378
No_of_seqs 138 out of 1191
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.7E-55 5.8E-60 424.0 38.7 329 15-370 83-430 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 5.1E-55 1.1E-59 424.0 33.2 313 10-372 110-452 (482)
3 cd05478 pepsin_A Pepsin A, asp 100.0 7E-55 1.5E-59 408.0 31.0 297 15-365 9-317 (317)
4 cd05486 Cathespin_E Cathepsin 100.0 1.1E-54 2.3E-59 406.6 29.4 298 17-365 1-316 (316)
5 cd05475 nucellin_like Nucellin 100.0 7.8E-54 1.7E-58 392.3 33.8 273 15-368 1-273 (273)
6 cd05477 gastricsin Gastricsins 100.0 8.8E-54 1.9E-58 400.9 32.1 300 15-366 2-318 (318)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 1.3E-53 2.8E-58 400.9 31.7 301 15-365 5-325 (325)
8 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.5E-53 3.3E-58 400.2 31.2 296 15-369 2-326 (326)
9 cd05488 Proteinase_A_fungi Fun 100.0 1.6E-53 3.4E-58 399.2 31.0 299 15-365 9-320 (320)
10 cd05472 cnd41_like Chloroplast 100.0 6E-53 1.3E-57 392.0 34.2 287 16-368 1-299 (299)
11 cd06098 phytepsin Phytepsin, a 100.0 5.5E-53 1.2E-57 394.9 32.7 287 15-365 9-317 (317)
12 cd05487 renin_like Renin stimu 100.0 3.3E-53 7.2E-58 398.0 31.2 300 15-366 7-326 (326)
13 cd05485 Cathepsin_D_like Cathe 100.0 1.4E-52 3E-57 393.9 30.4 301 15-365 10-329 (329)
14 PTZ00147 plasmepsin-1; Provisi 100.0 3.3E-52 7E-57 401.4 31.1 305 9-367 128-450 (453)
15 KOG1339 Aspartyl protease [Pos 100.0 1.8E-51 3.8E-56 395.3 34.0 331 15-369 45-397 (398)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.5E-51 3.4E-56 395.9 32.0 305 9-367 127-449 (450)
17 cd05473 beta_secretase_like Be 100.0 7.2E-50 1.6E-54 380.8 32.6 316 15-374 2-353 (364)
18 cd06097 Aspergillopepsin_like 100.0 4.3E-50 9.3E-55 368.9 27.6 266 17-365 1-278 (278)
19 cd05476 pepsin_A_like_plant Ch 100.0 1.4E-49 3E-54 362.9 29.8 247 16-368 1-265 (265)
20 cd05489 xylanase_inhibitor_I_l 100.0 7.2E-48 1.6E-52 364.5 35.6 325 23-366 2-361 (362)
21 PF00026 Asp: Eukaryotic aspar 100.0 4E-50 8.7E-55 376.3 17.1 300 16-366 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 3.4E-48 7.4E-53 359.7 28.3 269 15-366 1-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 8.4E-46 1.8E-50 341.4 29.7 266 17-365 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 99.9 7.2E-27 1.6E-31 196.8 16.2 156 17-189 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 7.1E-23 1.5E-27 172.4 13.9 151 211-365 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 4.9E-22 1.1E-26 156.3 13.4 108 19-152 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.1 9.3E-06 2E-10 61.5 7.2 94 15-154 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.4 0.00097 2.1E-08 53.0 8.3 94 15-154 10-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.9 0.0088 1.9E-07 44.3 8.6 89 19-153 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.9 0.07 1.5E-06 42.5 8.8 29 15-45 15-43 (124)
31 cd05479 RP_DDI RP_DDI; retrope 93.4 0.54 1.2E-05 37.3 8.0 26 338-363 99-124 (124)
32 cd06095 RP_RTVL_H_like Retrope 93.1 0.67 1.4E-05 34.1 7.5 25 20-46 2-26 (86)
33 cd05484 retropepsin_like_LTR_2 92.4 0.17 3.6E-06 37.8 3.5 28 17-46 1-28 (91)
34 PF08284 RVP_2: Retroviral asp 88.8 1 2.3E-05 36.3 5.3 28 339-366 105-132 (135)
35 PF13975 gag-asp_proteas: gag- 87.0 1.1 2.4E-05 31.7 4.0 30 15-46 7-36 (72)
36 PF13650 Asp_protease_2: Aspar 86.2 1.2 2.6E-05 32.5 4.0 29 219-252 3-31 (90)
37 TIGR03698 clan_AA_DTGF clan AA 85.1 1.7 3.7E-05 33.5 4.5 24 338-361 84-107 (107)
38 TIGR02281 clan_AA_DTGA clan AA 84.7 2.4 5.2E-05 33.5 5.3 35 210-252 10-44 (121)
39 PF13975 gag-asp_proteas: gag- 82.6 2.5 5.4E-05 29.9 4.2 29 219-252 13-41 (72)
40 cd05484 retropepsin_like_LTR_2 82.4 2.3 5E-05 31.5 4.1 30 218-252 4-33 (91)
41 COG3577 Predicted aspartyl pro 81.5 2.9 6.3E-05 35.9 4.7 76 15-128 104-179 (215)
42 PF00077 RVP: Retroviral aspar 80.6 2.7 5.8E-05 31.6 4.0 28 17-46 6-33 (100)
43 PF11925 DUF3443: Protein of u 79.0 17 0.00036 34.3 9.2 32 15-46 22-58 (370)
44 PF12384 Peptidase_A2B: Ty3 tr 79.0 23 0.0005 29.4 8.9 30 17-46 33-62 (177)
45 cd05483 retropepsin_like_bacte 77.8 4.4 9.6E-05 29.8 4.4 30 218-252 6-35 (96)
46 cd06095 RP_RTVL_H_like Retrope 75.7 4.4 9.6E-05 29.7 3.8 29 219-252 3-31 (86)
47 cd05482 HIV_retropepsin_like R 71.3 5.8 0.00013 29.3 3.4 24 20-45 2-25 (87)
48 PF00077 RVP: Retroviral aspar 67.1 7.2 0.00016 29.2 3.4 27 217-248 8-34 (100)
49 TIGR03698 clan_AA_DTGF clan AA 64.8 30 0.00065 26.5 6.4 26 19-44 2-32 (107)
50 cd05481 retropepsin_like_LTR_1 59.4 12 0.00025 28.0 3.1 31 219-253 3-33 (93)
51 PF09668 Asp_protease: Asparty 59.3 14 0.00029 29.4 3.6 29 219-252 29-57 (124)
52 PF09668 Asp_protease: Asparty 51.8 26 0.00056 27.8 4.1 30 15-46 23-52 (124)
53 COG3577 Predicted aspartyl pro 51.1 25 0.00054 30.4 4.1 35 210-252 104-138 (215)
54 cd06094 RP_Saci_like RP_Saci_l 47.1 1.2E+02 0.0025 22.5 8.3 67 28-134 8-74 (89)
55 COG5550 Predicted aspartyl pro 40.3 22 0.00049 27.9 2.1 24 233-256 29-53 (125)
56 PF02160 Peptidase_A3: Caulifl 39.5 88 0.0019 27.1 5.7 27 338-365 91-117 (201)
57 KOG0012 DNA damage inducible p 37.9 95 0.0021 29.3 6.0 38 325-366 308-346 (380)
58 cd06098 phytepsin Phytepsin, a 28.7 78 0.0017 29.3 4.2 37 10-46 181-227 (317)
59 PF12384 Peptidase_A2B: Ty3 tr 25.1 1.1E+02 0.0025 25.5 3.9 24 230-253 45-68 (177)
60 PF08284 RVP_2: Retroviral asp 23.7 1.2E+02 0.0025 24.4 3.7 28 16-45 21-48 (135)
61 cd05485 Cathepsin_D_like Cathe 22.7 1.2E+02 0.0026 28.3 4.3 39 8-46 181-227 (329)
62 cd05480 NRIP_C NRIP_C; putativ 21.3 1.2E+02 0.0026 23.1 3.0 28 220-252 4-31 (103)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.7e-55 Score=423.96 Aligned_cols=329 Identities=27% Similarity=0.529 Sum_probs=268.7
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCC----cccCCchhccCCCCCCCCCCCCCCC
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN----IVPCSNPRCAALHWPNPPRCKHPND 90 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S----~v~c~~~~C~~~~~~~t~~~~~~~~ 90 (378)
+.|+++|.||||||++.|++||||+++||+|. +|..|..+..+.|||++| .++|.++.|..++. ...|... +
T Consensus 83 ~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~-~ 158 (431)
T PLN03146 83 GEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDE-N 158 (431)
T ss_pred ccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCCC-C
Confidence 79999999999999999999999999999999 999999888899999999 48999999987653 3346543 5
Q ss_pred CCeeEeEeCCCCeEEEEEEEEEEEEeecCC-ccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCCChHHHHHhhcCCc
Q 017049 91 QCDYEIEYGDGGSSIGALVTDLFPLRFSNG-SVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLI 169 (378)
Q Consensus 91 ~~~~~~~y~~g~~~~G~~~~D~v~l~~~~g-~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l~~~~~i 169 (378)
.|.|.+.|+||+.+.|.+++|+|+|++..+ ...++++.|||++...+. +. ...+||||||++..+++.||... +
T Consensus 159 ~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~--f~-~~~~GilGLG~~~~Sl~sql~~~--~ 233 (431)
T PLN03146 159 TCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT--FD-EKGSGIVGLGGGPLSLISQLGSS--I 233 (431)
T ss_pred CCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC--cc-CCCceeEecCCCCccHHHHhhHh--h
Confidence 799999999997789999999999954322 245789999999876432 21 25799999999999999999764 5
Q ss_pred cCeEEEEeCC-----CCceeEEeCCCCCCCC-CceeeeCccCCCCCcceEeeeeEEEeCCEEeccCC--------CcEEE
Q 017049 170 RNVIGHCIGQ-----NGRGVLFLGDGKVPSS-GVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKD--------LTLIF 235 (378)
Q Consensus 170 ~~~fsl~l~~-----~~~G~l~fGd~~~~~g-~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~--------~~~ii 235 (378)
.++||+||.+ ...|.|+||..+++.+ .+.|+|+..... ..+|.|.|++|+||++.+..+. ..+||
T Consensus 234 ~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~ii 312 (431)
T PLN03146 234 GGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIII 312 (431)
T ss_pred CCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEE
Confidence 5699999963 2479999996555554 589999986421 3789999999999999876532 47999
Q ss_pred ecCCcceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCce
Q 017049 236 DSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAY 315 (378)
Q Consensus 236 DSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~ 315 (378)
||||++++||.++|++|.+++...+...... .....+..||.... ...+|.|+|+|++ ..+.|++++|
T Consensus 313 DSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~--~~~~~~~~C~~~~~------~~~~P~i~~~F~G----a~~~l~~~~~ 380 (431)
T PLN03146 313 DSGTTLTLLPSDFYSELESAVEEAIGGERVS--DPQGLLSLCYSSTS------DIKLPIITAHFTG----ADVKLQPLNT 380 (431)
T ss_pred eCCccceecCHHHHHHHHHHHHHHhccccCC--CCCCCCCccccCCC------CCCCCeEEEEECC----CeeecCccee
Confidence 9999999999999999999999887532111 12223557886321 1358999999974 7899999999
Q ss_pred EEEeCCccEEEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeecCCCCc
Q 017049 316 LVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNT 370 (378)
Q Consensus 316 ~~~~~~~~~C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~~c~~ 370 (378)
++...++..|++++... +.+|||+.|||++|++||.+++|||||+.+|+.
T Consensus 381 ~~~~~~~~~Cl~~~~~~-----~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 381 FVKVSEDLVCFAMIPTS-----SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred EEEcCCCcEEEEEecCC-----CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 99777777899887542 369999999999999999999999999999975
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=5.1e-55 Score=423.97 Aligned_cols=313 Identities=21% Similarity=0.400 Sum_probs=251.1
Q ss_pred eeeec----ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCC
Q 017049 10 FFPIF----SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRC 85 (378)
Q Consensus 10 ~~pl~----~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~ 85 (378)
.-||. .+|+++|+||||||+|+|+|||||+++||+|. .|..|.+..++.||+++|+ |+..
T Consensus 110 ~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~-~C~~~~C~~~~~yd~s~SS---------------Ty~~ 173 (482)
T PTZ00165 110 QQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK-ECKSGGCAPHRKFDPKKSS---------------TYTK 173 (482)
T ss_pred ceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch-hcCcccccccCCCCccccC---------------CcEe
Confidence 34555 89999999999999999999999999999999 8986555678899999993 5543
Q ss_pred CCCC-CCCeeEeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCC--------
Q 017049 86 KHPN-DQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR-------- 156 (378)
Q Consensus 86 ~~~~-~~~~~~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~-------- 156 (378)
...+ ....+.+.|++| .+.|.+++|+|+| |++.++++.||++...... .+....+|||||||++.
T Consensus 174 ~~~~~~~~~~~i~YGsG-s~~G~l~~DtV~i----g~l~i~~q~FG~a~~~s~~-~f~~~~~DGILGLg~~~~s~~s~~~ 247 (482)
T PTZ00165 174 LKLGDESAETYIQYGTG-ECVLALGKDTVKI----GGLKVKHQSIGLAIEESLH-PFADLPFDGLVGLGFPDKDFKESKK 247 (482)
T ss_pred cCCCCccceEEEEeCCC-cEEEEEEEEEEEE----CCEEEccEEEEEEEecccc-ccccccccceeecCCCcccccccCC
Confidence 1110 112578999999 7889999999999 8888999999999876322 23335789999999854
Q ss_pred -ChHHHHHhhcCCc-cCeEEEEeCC--CCceeEEeC--CCCCC--CCCceeeeCccCCCCCcceEeeeeEEEeCCEEecc
Q 017049 157 -ISIVSQLREYGLI-RNVIGHCIGQ--NGRGVLFLG--DGKVP--SSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL 228 (378)
Q Consensus 157 -~s~~~~l~~~~~i-~~~fsl~l~~--~~~G~l~fG--d~~~~--~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~ 228 (378)
.+++++|++||++ +++||+||.+ +.+|+|+|| |+.++ .+++.|+|+... .+|++.+++|+|+++.+..
T Consensus 248 ~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~----~yW~i~l~~i~vgg~~~~~ 323 (482)
T PTZ00165 248 ALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST----DYWEIEVVDILIDGKSLGF 323 (482)
T ss_pred CCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc----ceEEEEeCeEEECCEEeee
Confidence 4689999999999 9999999974 357999999 76555 578999999875 8999999999999977653
Q ss_pred --CCCcEEEecCCcceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCC-Ccc
Q 017049 229 --KDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNR-RNS 305 (378)
Q Consensus 229 --~~~~~iiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~-~~~ 305 (378)
....|++||||+++++|++++++|.+++++. ..|... ..+|+|+|+|++. ...
T Consensus 324 ~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~------~~C~~~------------------~~lP~itf~f~g~~g~~ 379 (482)
T PTZ00165 324 CDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE------EDCSNK------------------DSLPRISFVLEDVNGRK 379 (482)
T ss_pred cCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc------cccccc------------------ccCCceEEEECCCCCce
Confidence 4678999999999999999999999988642 233211 2579999999752 113
Q ss_pred eEEEeCCCceEEEe----CCccEEEEEEcCCCC--CCCCceeEcceeeeeeEEEEeCCCCEEeeecCCCCccc
Q 017049 306 VRLVVPPEAYLVIS----GRKNVCLGILNGSEA--EVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTLL 372 (378)
Q Consensus 306 ~~~~l~~~~~~~~~----~~~~~C~~~~~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~~c~~~~ 372 (378)
..|.|+|++|+.+. ..+..|+..+...+. +.++.||||++|||++|+|||.+++|||||+++|+...
T Consensus 380 v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~~ 452 (482)
T PTZ00165 380 IKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQSG 452 (482)
T ss_pred EEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCCC
Confidence 58999999999863 234589654433221 23468999999999999999999999999999887654
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=7e-55 Score=407.99 Aligned_cols=297 Identities=20% Similarity=0.361 Sum_probs=248.4
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCee
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~ 94 (378)
..|+++|.||||||++.|+|||||+++||+|. .|..|.++.++.|+|++|+ |++. ..+.+
T Consensus 9 ~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~-~C~~~~c~~~~~f~~~~Ss---------------t~~~----~~~~~ 68 (317)
T cd05478 9 MEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV-YCSSQACSNHNRFNPRQSS---------------TYQS----TGQPL 68 (317)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCCccEEEecC-CCCcccccccCcCCCCCCc---------------ceee----CCcEE
Confidence 78999999999999999999999999999998 8987666678899999993 5543 56799
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCC------ChHHHHHhhcCC
Q 017049 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLREYGL 168 (378)
Q Consensus 95 ~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~------~s~~~~l~~~~~ 168 (378)
++.|++| ++.|.+++|+|+| |+..++++.|||+....+.. ......+||||||++. .+++++|+++++
T Consensus 69 ~~~yg~g-s~~G~~~~D~v~i----g~~~i~~~~fg~~~~~~~~~-~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~ 142 (317)
T cd05478 69 SIQYGTG-SMTGILGYDTVQV----GGISDTNQIFGLSETEPGSF-FYYAPFDGILGLAYPSIASSGATPVFDNMMSQGL 142 (317)
T ss_pred EEEECCc-eEEEEEeeeEEEE----CCEEECCEEEEEEEecCccc-cccccccceeeeccchhcccCCCCHHHHHHhCCC
Confidence 9999999 5899999999999 88888999999998763321 1123579999999854 459999999999
Q ss_pred c-cCeEEEEeCCC--CceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEecc-CCCcEEEecCCcce
Q 017049 169 I-RNVIGHCIGQN--GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL-KDLTLIFDSGASYA 242 (378)
Q Consensus 169 i-~~~fsl~l~~~--~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~-~~~~~iiDSGt~~~ 242 (378)
| +++||+||.++ ..|.|+|| |++++.|++.|+|+... .+|.+.+++|+||++.+.. .+..++|||||+++
T Consensus 143 i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~----~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts~~ 218 (317)
T cd05478 143 VSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE----TYWQITVDSVTINGQVVACSGGCQAIVDTGTSLL 218 (317)
T ss_pred CCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC----cEEEEEeeEEEECCEEEccCCCCEEEECCCchhh
Confidence 9 89999999864 47999999 88899999999999765 8999999999999998864 35689999999999
Q ss_pred eeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEEEeCCc
Q 017049 243 YFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRK 322 (378)
Q Consensus 243 ~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~~~~~ 322 (378)
+||++++++|.+++++... . ..++..+|... ..+|.|+|+|++ +.+.||+++|+.+. +
T Consensus 219 ~lp~~~~~~l~~~~~~~~~--------~----~~~~~~~C~~~----~~~P~~~f~f~g----~~~~i~~~~y~~~~--~ 276 (317)
T cd05478 219 VGPSSDIANIQSDIGASQN--------Q----NGEMVVNCSSI----SSMPDVVFTING----VQYPLPPSAYILQD--Q 276 (317)
T ss_pred hCCHHHHHHHHHHhCCccc--------c----CCcEEeCCcCc----ccCCcEEEEECC----EEEEECHHHheecC--C
Confidence 9999999999998865322 0 11344455533 257999999954 89999999999854 5
Q ss_pred cEEEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeec
Q 017049 323 NVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 365 (378)
Q Consensus 323 ~~C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~ 365 (378)
..|++.+...+ ..+.||||++|||++|+|||++++|||||+
T Consensus 277 ~~C~~~~~~~~--~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 277 GSCTSGFQSMG--LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CEEeEEEEeCC--CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 67987665442 245799999999999999999999999996
No 4
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.1e-54 Score=406.59 Aligned_cols=298 Identities=19% Similarity=0.352 Sum_probs=242.9
Q ss_pred EEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCeeEe
Q 017049 17 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEI 96 (378)
Q Consensus 17 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~~~ 96 (378)
|+++|+||||||+++|+|||||+++||+|. .|..+.+..++.|+|++|+ |++. .++.|++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~-~C~~~~C~~~~~y~~~~Ss---------------T~~~----~~~~~~i 60 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI-YCTSQACTKHNRFQPSESS---------------TYVS----NGEAFSI 60 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccCccceECCCCCc---------------cccc----CCcEEEE
Confidence 899999999999999999999999999998 8874333367889999993 6553 6789999
Q ss_pred EeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCC------ChHHHHHhhcCCc-
Q 017049 97 EYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLREYGLI- 169 (378)
Q Consensus 97 ~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~------~s~~~~l~~~~~i- 169 (378)
.|++| .+.|.+++|+|+| |+..++++.||++...... .+.....+||||||++. .+++++|++|+++
T Consensus 61 ~Yg~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 61 QYGTG-SLTGIIGIDQVTV----EGITVQNQQFAESVSEPGS-TFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred EeCCc-EEEEEeeecEEEE----CCEEEcCEEEEEeeccCcc-cccccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 99999 7899999999999 7888899999998765322 12234689999999854 3579999999999
Q ss_pred cCeEEEEeCCC----CceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEecc-CCCcEEEecCCcce
Q 017049 170 RNVIGHCIGQN----GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL-KDLTLIFDSGASYA 242 (378)
Q Consensus 170 ~~~fsl~l~~~----~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~-~~~~~iiDSGt~~~ 242 (378)
.++||+||.++ ..|.|+|| |++++.|++.|+|+... .+|.|++++|+|+++.+.. ....++|||||+++
T Consensus 135 ~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~----~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~ 210 (316)
T cd05486 135 LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ----GYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLI 210 (316)
T ss_pred CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc----eEEEEEeeEEEEecceEecCCCCEEEECCCcchh
Confidence 89999999853 47999999 88899999999999765 8999999999999987643 45789999999999
Q ss_pred eeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEEEe--C
Q 017049 243 YFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS--G 320 (378)
Q Consensus 243 ~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~~--~ 320 (378)
++|++++++|.+.+++... ..+|..+|+.. ..+|+|+|+|++ +.+.|++++|++.. .
T Consensus 211 ~lP~~~~~~l~~~~~~~~~-------------~~~~~~~C~~~----~~~p~i~f~f~g----~~~~l~~~~y~~~~~~~ 269 (316)
T cd05486 211 TGPSGDIKQLQNYIGATAT-------------DGEYGVDCSTL----SLMPSVTFTING----IPYSLSPQAYTLEDQSD 269 (316)
T ss_pred hcCHHHHHHHHHHhCCccc-------------CCcEEEecccc----ccCCCEEEEECC----EEEEeCHHHeEEecccC
Confidence 9999999999888754311 01234445432 257999999964 89999999999864 2
Q ss_pred CccEEEEEEcCCC--CCCCCceeEcceeeeeeEEEEeCCCCEEeeec
Q 017049 321 RKNVCLGILNGSE--AEVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 365 (378)
Q Consensus 321 ~~~~C~~~~~~~~--~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~ 365 (378)
....|+..+...+ ....+.||||++|||++|+|||.+++|||||+
T Consensus 270 ~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 270 GGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 3467976554322 11245799999999999999999999999996
No 5
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=7.8e-54 Score=392.27 Aligned_cols=273 Identities=60% Similarity=1.112 Sum_probs=231.7
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCee
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~ 94 (378)
++|+++|.||||||++.|++||||+++||+|..+|..| .|.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c--------------------------------------~c~~ 42 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC--------------------------------------QCDY 42 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC--------------------------------------cCcc
Confidence 47999999999999999999999999999985355444 2479
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCCChHHHHHhhcCCccCeEE
Q 017049 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIG 174 (378)
Q Consensus 95 ~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l~~~~~i~~~fs 174 (378)
++.|+|++.+.|.+++|+|+|+..++....+++.|||+....+.........+||||||+...++++||++++.++++||
T Consensus 43 ~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs 122 (273)
T cd05475 43 EIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIG 122 (273)
T ss_pred EeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEE
Confidence 99999887999999999999976666667889999999876433222235689999999999999999999998899999
Q ss_pred EEeCCCCceeEEeCCCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEeccCCCcEEEecCCcceeeChHHHHHHHH
Q 017049 175 HCIGQNGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVS 254 (378)
Q Consensus 175 l~l~~~~~G~l~fGd~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~ 254 (378)
+||.++..|.|+|||..++.+++.|+|+..... ..+|.|++.+|+||++.+......++|||||++++||+++|
T Consensus 123 ~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y----- 196 (273)
T cd05475 123 HCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY----- 196 (273)
T ss_pred EEccCCCCeEEEECCCCCCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc-----
Confidence 999987789999998777889999999987531 37899999999999997766678899999999999999876
Q ss_pred HHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEEEeCCccEEEEEEcCCCC
Q 017049 255 LIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEA 334 (378)
Q Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 334 (378)
+|+|+|+|++...++++.|++++|+.....+..|++++...+.
T Consensus 197 -------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~ 239 (273)
T cd05475 197 -------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEI 239 (273)
T ss_pred -------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCc
Confidence 3678999976321379999999999876667789999876533
Q ss_pred CCCCceeEcceeeeeeEEEEeCCCCEEeeecCCC
Q 017049 335 EVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDC 368 (378)
Q Consensus 335 ~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~~c 368 (378)
...+.||||+.|||++|++||++++|||||+++|
T Consensus 240 ~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 240 GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 3345799999999999999999999999999999
No 6
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=8.8e-54 Score=400.86 Aligned_cols=300 Identities=18% Similarity=0.361 Sum_probs=247.5
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCee
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~ 94 (378)
..|+++|.||||||++.|+|||||+++||+|. .|..+.+..++.|+|++|+ |++. ..|.|
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~C~~~~~f~~~~Ss---------------T~~~----~~~~~ 61 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV-LCQSQACTNHTKFNPSQSS---------------TYST----NGETF 61 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccC-CCCCccccccCCCCcccCC---------------CceE----CCcEE
Confidence 36999999999999999999999999999998 8975444467899999993 6653 67899
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCC------CChHHHHHhhcCC
Q 017049 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRG------RISIVSQLREYGL 168 (378)
Q Consensus 95 ~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~------~~s~~~~l~~~~~ 168 (378)
++.|++| ++.|.+++|+|+| |+..++++.|||++...+. .+.....+||||||++ ..+++++|+++|.
T Consensus 62 ~~~Yg~G-s~~G~~~~D~i~~----g~~~i~~~~Fg~~~~~~~~-~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~ 135 (318)
T cd05477 62 SLQYGSG-SLTGIFGYDTVTV----QGIIITNQEFGLSETEPGT-NFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNL 135 (318)
T ss_pred EEEECCc-EEEEEEEeeEEEE----CCEEEcCEEEEEEEecccc-cccccceeeEeecCcccccccCCCCHHHHHHhcCC
Confidence 9999999 6899999999999 8888899999999876322 1222457999999984 3679999999999
Q ss_pred c-cCeEEEEeCCC---CceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEecc--CCCcEEEecCCc
Q 017049 169 I-RNVIGHCIGQN---GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL--KDLTLIFDSGAS 240 (378)
Q Consensus 169 i-~~~fsl~l~~~---~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~--~~~~~iiDSGt~ 240 (378)
| +++||+||.+. ..|.|+|| |++++.+++.|+|+... .+|.|.+++|+|+++.+.. .+..++|||||+
T Consensus 136 i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~----~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt 211 (318)
T cd05477 136 LQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE----TYWQIGIQGFQINGQATGWCSQGCQAIVDTGTS 211 (318)
T ss_pred cCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc----eEEEEEeeEEEECCEEecccCCCceeeECCCCc
Confidence 9 99999999854 46999999 88899999999999765 8999999999999987643 356799999999
Q ss_pred ceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEEEeC
Q 017049 241 YAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISG 320 (378)
Q Consensus 241 ~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~~~ 320 (378)
++++|++++++|++++++.... ..+|..+|... ..+|.|+|+|++ +++.|++++|+...
T Consensus 212 ~~~lP~~~~~~l~~~~~~~~~~------------~~~~~~~C~~~----~~~p~l~~~f~g----~~~~v~~~~y~~~~- 270 (318)
T cd05477 212 LLTAPQQVMSTLMQSIGAQQDQ------------YGQYVVNCNNI----QNLPTLTFTING----VSFPLPPSAYILQN- 270 (318)
T ss_pred cEECCHHHHHHHHHHhCCcccc------------CCCEEEeCCcc----ccCCcEEEEECC----EEEEECHHHeEecC-
Confidence 9999999999999998764321 12455556543 257999999964 89999999999854
Q ss_pred CccEEEEEEcCCCC---CCCCceeEcceeeeeeEEEEeCCCCEEeeecC
Q 017049 321 RKNVCLGILNGSEA---EVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 366 (378)
Q Consensus 321 ~~~~C~~~~~~~~~---~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~ 366 (378)
...|+..+..... ...+.||||++|||++|++||++++|||||++
T Consensus 271 -~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 -NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred -CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 4579644432211 12347999999999999999999999999985
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.3e-53 Score=400.93 Aligned_cols=301 Identities=19% Similarity=0.312 Sum_probs=242.8
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCC--CCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCC
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGC--TKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQC 92 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c--~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~ 92 (378)
.+|+++|.||||||+++|+|||||+++||+|. .|..| .+..++.|+|++|+ |++. .++
T Consensus 5 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~~~~~y~~~~Ss---------------T~~~----~~~ 64 (325)
T cd05490 5 AQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV-HCSLLDIACWLHHKYNSSKSS---------------TYVK----NGT 64 (325)
T ss_pred CEEEEEEEECCCCcEEEEEEeCCCccEEEEcC-CCCCCCccccCcCcCCcccCc---------------ceee----CCc
Confidence 57999999999999999999999999999998 88632 22256789999993 6553 567
Q ss_pred eeEeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCC------ChHHHHHhhc
Q 017049 93 DYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLREY 166 (378)
Q Consensus 93 ~~~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~------~s~~~~l~~~ 166 (378)
.|.+.|++| .+.|.+++|+|+| |+..++++.||++....+. .+.....+||||||++. .+++++|+++
T Consensus 65 ~~~i~Yg~G-~~~G~~~~D~v~~----g~~~~~~~~Fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~ 138 (325)
T cd05490 65 EFAIQYGSG-SLSGYLSQDTVSI----GGLQVEGQLFGEAVKQPGI-TFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQ 138 (325)
T ss_pred EEEEEECCc-EEEEEEeeeEEEE----CCEEEcCEEEEEEeeccCC-cccceeeeEEEecCCccccccCCCCHHHHHHhc
Confidence 999999999 6899999999999 8888999999999876322 22234679999999854 4688999999
Q ss_pred CCc-cCeEEEEeCCC----CceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEec-cCCCcEEEecC
Q 017049 167 GLI-RNVIGHCIGQN----GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCG-LKDLTLIFDSG 238 (378)
Q Consensus 167 ~~i-~~~fsl~l~~~----~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~-~~~~~~iiDSG 238 (378)
+.+ +++||+||.++ ..|.|+|| |++++.+++.|+|+... .+|.|++++|+|++.... .....++||||
T Consensus 139 g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~----~~w~v~l~~i~vg~~~~~~~~~~~aiiDSG 214 (325)
T cd05490 139 KLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK----AYWQIHMDQVDVGSGLTLCKGGCEAIVDTG 214 (325)
T ss_pred CCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc----eEEEEEeeEEEECCeeeecCCCCEEEECCC
Confidence 999 99999999843 36999999 88889999999999764 899999999999987543 34578999999
Q ss_pred CcceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEEE
Q 017049 239 ASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVI 318 (378)
Q Consensus 239 t~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~ 318 (378)
|+++++|.+++++|.+++++... . ..+|..+|+.. ..+|+|+|+|++ ..+.|++++|+++
T Consensus 215 Tt~~~~p~~~~~~l~~~~~~~~~------~------~~~~~~~C~~~----~~~P~i~f~fgg----~~~~l~~~~y~~~ 274 (325)
T cd05490 215 TSLITGPVEEVRALQKAIGAVPL------I------QGEYMIDCEKI----PTLPVISFSLGG----KVYPLTGEDYILK 274 (325)
T ss_pred CccccCCHHHHHHHHHHhCCccc------c------CCCEEeccccc----ccCCCEEEEECC----EEEEEChHHeEEe
Confidence 99999999999999998854211 0 01234445432 257999999964 8999999999986
Q ss_pred eCC--ccEEEEEEcCCCC--CCCCceeEcceeeeeeEEEEeCCCCEEeeec
Q 017049 319 SGR--KNVCLGILNGSEA--EVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 365 (378)
Q Consensus 319 ~~~--~~~C~~~~~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~ 365 (378)
... ...|+..+...+. ...+.||||++|||++|+|||++++|||||+
T Consensus 275 ~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 275 VSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred ccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 432 3579865543221 1345799999999999999999999999996
No 8
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.5e-53 Score=400.18 Aligned_cols=296 Identities=24% Similarity=0.497 Sum_probs=241.1
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCC----cccCCchhccCCCCCCCCCCCCCCC
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN----IVPCSNPRCAALHWPNPPRCKHPND 90 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S----~v~c~~~~C~~~~~~~t~~~~~~~~ 90 (378)
+.|+++|.||||+|+++|+|||||+++||+|. +|..|..+.++.|+|++| .+.|.+..|.. ...|. ++
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~--~~ 73 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS-QCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-----CLSCL--NN 73 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC-CCCCcCCCCCCCcCcccccccccccCCCccccc-----cCcCC--CC
Confidence 57999999999999999999999999999999 999998877889999998 48899999964 33453 37
Q ss_pred CCeeEeEeCCCCeEEEEEEEEEEEEeecCCc---cccccEEEeeeeecCCCCCCCCCCcceEEeeCCCCC----hHHHHH
Q 017049 91 QCDYEIEYGDGGSSIGALVTDLFPLRFSNGS---VFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI----SIVSQL 163 (378)
Q Consensus 91 ~~~~~~~y~~g~~~~G~~~~D~v~l~~~~g~---~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~~----s~~~~l 163 (378)
.|.|.+.|++|+.+.|.+++|+|+|+..... ....++.|||+....+. +.....+||||||+... +.+.+|
T Consensus 74 ~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~--~~~~~~~GilGLg~~~~~~~~~~~~~l 151 (326)
T cd06096 74 KCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNL--FLTQQATGILGLSLTKNNGLPTPIILL 151 (326)
T ss_pred cCcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCc--ccccccceEEEccCCcccccCchhHHH
Confidence 7999999999977999999999999432110 01235789999876432 22356899999999653 234456
Q ss_pred hhcCCc-c--CeEEEEeCCCCceeEEeC--CCCCCC----------CCceeeeCccCCCCCcceEeeeeEEEeCCEE---
Q 017049 164 REYGLI-R--NVIGHCIGQNGRGVLFLG--DGKVPS----------SGVAWTPMLQNSADLKHYILGPAELLYSGKS--- 225 (378)
Q Consensus 164 ~~~~~i-~--~~fsl~l~~~~~G~l~fG--d~~~~~----------g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~--- 225 (378)
.+++.+ . ++||+||.++ .|.|+|| |+.++. +++.|+|+... .+|.|.+++|+|+++.
T Consensus 152 ~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~----~~y~v~l~~i~vg~~~~~~ 226 (326)
T cd06096 152 FTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK----YYYYVKLEGLSVYGTTSNS 226 (326)
T ss_pred HHhcccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCC----ceEEEEEEEEEEcccccce
Confidence 666655 4 9999999864 7999999 666665 78999999876 8899999999999875
Q ss_pred eccCCCcEEEecCCcceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcc
Q 017049 226 CGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNS 305 (378)
Q Consensus 226 ~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~ 305 (378)
.......++|||||++++||++++++|.+++ |+|+|.|++ +
T Consensus 227 ~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------------P~i~~~f~~---g 267 (326)
T cd06096 227 GNTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------------PTITIIFEN---N 267 (326)
T ss_pred ecccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------------CcEEEEEcC---C
Confidence 2335688999999999999999999988776 478999986 5
Q ss_pred eEEEeCCCceEEEeCCccEEEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeecCCCC
Q 017049 306 VRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCN 369 (378)
Q Consensus 306 ~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~~c~ 369 (378)
..+.++|++|++......+|.. +... .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 268 ~~~~i~p~~y~~~~~~~~c~~~-~~~~----~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 268 LKIDWKPSSYLYKKESFWCKGG-EKSV----SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred cEEEECHHHhccccCCceEEEE-EecC----CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 8999999999987544444444 4333 357999999999999999999999999999994
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.6e-53 Score=399.21 Aligned_cols=299 Identities=19% Similarity=0.345 Sum_probs=246.6
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCee
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~ 94 (378)
..|+++|.||||+|++.|+|||||+++||+|. +|..+.+..++.|++++|. |+.. +.|.+
T Consensus 9 ~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~-~C~~~~C~~~~~y~~~~Ss---------------t~~~----~~~~~ 68 (320)
T cd05488 9 AQYFTDITLGTPPQKFKVILDTGSSNLWVPSV-KCGSIACFLHSKYDSSASS---------------TYKA----NGTEF 68 (320)
T ss_pred CEEEEEEEECCCCcEEEEEEecCCcceEEEcC-CCCCcccCCcceECCCCCc---------------ceee----CCCEE
Confidence 78999999999999999999999999999999 8975433356799999993 5543 67899
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCCC------hHHHHHhhcCC
Q 017049 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI------SIVSQLREYGL 168 (378)
Q Consensus 95 ~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~~------s~~~~l~~~~~ 168 (378)
.+.|++| .+.|.+++|+|+| ++..++++.|||+....+. .+.....+||||||++.. +.+.+|+++|+
T Consensus 69 ~~~y~~g-~~~G~~~~D~v~i----g~~~~~~~~f~~a~~~~g~-~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~ 142 (320)
T cd05488 69 KIQYGSG-SLEGFVSQDTLSI----GDLTIKKQDFAEATSEPGL-AFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGL 142 (320)
T ss_pred EEEECCc-eEEEEEEEeEEEE----CCEEECCEEEEEEecCCCc-ceeeeeeceEEecCCccccccCCCCHHHHHHhcCC
Confidence 9999999 6899999999999 7888899999999866322 222346799999999653 45778999999
Q ss_pred c-cCeEEEEeCCC--CceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEeccCCCcEEEecCCccee
Q 017049 169 I-RNVIGHCIGQN--GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAY 243 (378)
Q Consensus 169 i-~~~fsl~l~~~--~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~iiDSGt~~~~ 243 (378)
| +++||+||.+. ..|.|+|| |++++.++++|+|+... .+|.+++++|+||++.+...+..++|||||++++
T Consensus 143 i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~----~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt~~~ 218 (320)
T cd05488 143 LDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK----AYWEVELEKIGLGDEELELENTGAAIDTGTSLIA 218 (320)
T ss_pred CCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC----cEEEEEeCeEEECCEEeccCCCeEEEcCCccccc
Confidence 9 99999999853 58999999 77889999999999865 8999999999999998877778999999999999
Q ss_pred eChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEEEeCCcc
Q 017049 244 FTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKN 323 (378)
Q Consensus 244 lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~~~~~~ 323 (378)
||++++++|.+++++... ...+|..+|... ..+|+|+|+|++ +++.||+++|+.+ .+.
T Consensus 219 lp~~~~~~l~~~~~~~~~------------~~~~~~~~C~~~----~~~P~i~f~f~g----~~~~i~~~~y~~~--~~g 276 (320)
T cd05488 219 LPSDLAEMLNAEIGAKKS------------WNGQYTVDCSKV----DSLPDLTFNFDG----YNFTLGPFDYTLE--VSG 276 (320)
T ss_pred CCHHHHHHHHHHhCCccc------------cCCcEEeecccc----ccCCCEEEEECC----EEEEECHHHheec--CCC
Confidence 999999999988854321 112344455432 258999999975 8999999999984 244
Q ss_pred EEEEEEcCCCC--CCCCceeEcceeeeeeEEEEeCCCCEEeeec
Q 017049 324 VCLGILNGSEA--EVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 365 (378)
Q Consensus 324 ~C~~~~~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~ 365 (378)
.|+..+...+. ...+.||||++|||++|+|||.+++|||||+
T Consensus 277 ~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 277 SCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred eEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 69876654321 1234799999999999999999999999996
No 10
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=6e-53 Score=392.00 Aligned_cols=287 Identities=30% Similarity=0.538 Sum_probs=236.0
Q ss_pred eEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCeeE
Q 017049 16 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYE 95 (378)
Q Consensus 16 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~~ 95 (378)
+|+++|.||||||++.|+|||||+++||+|. +| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-~c------------------------------------------~~~~ 37 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-PC------------------------------------------CLYQ 37 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-CC------------------------------------------Ceee
Confidence 5999999999999999999999999999876 33 3789
Q ss_pred eEeCCCCeEEEEEEEEEEEEeecCCcc-ccccEEEeeeeecCCCCCCCCCCcceEEeeCCCCChHHHHHhhcCCccCeEE
Q 017049 96 IEYGDGGSSIGALVTDLFPLRFSNGSV-FNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIG 174 (378)
Q Consensus 96 ~~y~~g~~~~G~~~~D~v~l~~~~g~~-~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l~~~~~i~~~fs 174 (378)
+.|++|+.+.|.+++|+|+| |+. .++++.|||+....+. + ...+||||||+...+++.|+..+ .+++||
T Consensus 38 i~Yg~Gs~~~G~~~~D~v~i----g~~~~~~~~~Fg~~~~~~~~--~--~~~~GilGLg~~~~s~~~ql~~~--~~~~FS 107 (299)
T cd05472 38 VSYGDGSYTTGDLATDTLTL----GSSDVVPGFAFGCGHDNEGL--F--GGAAGLLGLGRGKLSLPSQTASS--YGGVFS 107 (299)
T ss_pred eEeCCCceEEEEEEEEEEEe----CCCCccCCEEEECCccCCCc--c--CCCCEEEECCCCcchHHHHhhHh--hcCceE
Confidence 99999977899999999999 665 6889999999877432 2 36899999999999999998765 468999
Q ss_pred EEeCC---CCceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEecc-----CCCcEEEecCCcceee
Q 017049 175 HCIGQ---NGRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL-----KDLTLIFDSGASYAYF 244 (378)
Q Consensus 175 l~l~~---~~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~-----~~~~~iiDSGt~~~~l 244 (378)
+||.+ ...|+|+|| |++ .+++.|+|+........+|.|+|++|+|+++.+.. ....++|||||++++|
T Consensus 108 ~~L~~~~~~~~G~l~fGg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~l 185 (299)
T cd05472 108 YCLPDRSSSSSGYLSFGAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRL 185 (299)
T ss_pred EEccCCCCCCCceEEeCCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceec
Confidence 99985 458999999 554 89999999987643347899999999999998864 2468999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEEEe-CCcc
Q 017049 245 TSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS-GRKN 323 (378)
Q Consensus 245 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~~-~~~~ 323 (378)
|++++++|.+++.+..... ........++.|+..++.. ...+|+|+|+|++ +..+.|++++|++.. ..+.
T Consensus 186 p~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~C~~~~~~~----~~~~P~i~f~f~~---g~~~~l~~~~y~~~~~~~~~ 256 (299)
T cd05472 186 PPSAYAALRDAFRAAMAAY--PRAPGFSILDTCYDLSGFR----SVSVPTVSLHFQG---GADVELDASGVLYPVDDSSQ 256 (299)
T ss_pred CHHHHHHHHHHHHHHhccC--CCCCCCCCCCccCcCCCCc----CCccCCEEEEECC---CCEEEeCcccEEEEecCCCC
Confidence 9999999999998876411 1111222344587654432 2368999999986 589999999999843 4467
Q ss_pred EEEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeecCCC
Q 017049 324 VCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDC 368 (378)
Q Consensus 324 ~C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~~c 368 (378)
.|+++..... ..+.+|||+.|||++|+|||++++|||||+++|
T Consensus 257 ~C~~~~~~~~--~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 257 VCLAFAGTSD--DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEEEEeCCCC--CCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 8997775431 245799999999999999999999999999999
No 11
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=5.5e-53 Score=394.87 Aligned_cols=287 Identities=23% Similarity=0.388 Sum_probs=236.6
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCC---CCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCC
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCT---GCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQ 91 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~---~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~ 91 (378)
..|+++|.||||||+++|+|||||+++||+|. .|. .|. .++.|+|++|+ |++. ..
T Consensus 9 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~C~--~~~~y~~~~Ss---------------T~~~----~~ 66 (317)
T cd06098 9 AQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS-KCYFSIACY--FHSKYKSSKSS---------------TYKK----NG 66 (317)
T ss_pred CEEEEEEEECCCCeEEEEEECCCccceEEecC-CCCCCcccc--ccCcCCcccCC---------------Cccc----CC
Confidence 78999999999999999999999999999998 885 676 56789999993 6665 55
Q ss_pred CeeEeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCC------ChHHHHHhh
Q 017049 92 CDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLRE 165 (378)
Q Consensus 92 ~~~~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~------~s~~~~l~~ 165 (378)
..+.+.|++| .+.|.+++|+|+| |+..++++.||+++.... ..+.....+||||||++. .+++.+|++
T Consensus 67 ~~~~i~Yg~G-~~~G~~~~D~v~i----g~~~v~~~~f~~~~~~~~-~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 140 (317)
T cd06098 67 TSASIQYGTG-SISGFFSQDSVTV----GDLVVKNQVFIEATKEPG-LTFLLAKFDGILGLGFQEISVGKAVPVWYNMVE 140 (317)
T ss_pred CEEEEEcCCc-eEEEEEEeeEEEE----CCEEECCEEEEEEEecCC-ccccccccceeccccccchhhcCCCCHHHHHHh
Confidence 6899999999 6899999999999 788889999999987632 223335689999999854 457889999
Q ss_pred cCCc-cCeEEEEeCCC----CceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEecc--CCCcEEEe
Q 017049 166 YGLI-RNVIGHCIGQN----GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL--KDLTLIFD 236 (378)
Q Consensus 166 ~~~i-~~~fsl~l~~~----~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~--~~~~~iiD 236 (378)
+|+| +++||+||.+. ..|.|+|| |++++.|+++|+|+... .+|.+.+++|+|+++.+.. ....++||
T Consensus 141 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~----~~w~v~l~~i~v~g~~~~~~~~~~~aivD 216 (317)
T cd06098 141 QGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK----GYWQFEMGDVLIGGKSTGFCAGGCAAIAD 216 (317)
T ss_pred cCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC----cEEEEEeCeEEECCEEeeecCCCcEEEEe
Confidence 9999 89999999743 47999999 88999999999999764 8999999999999987643 45689999
Q ss_pred cCCcceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceE
Q 017049 237 SGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYL 316 (378)
Q Consensus 237 SGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~ 316 (378)
|||+++++|+++++++. +...|... ..+|+|+|+|++ ..+.|++++|+
T Consensus 217 TGTs~~~lP~~~~~~i~----------~~~~C~~~------------------~~~P~i~f~f~g----~~~~l~~~~yi 264 (317)
T cd06098 217 SGTSLLAGPTTIVTQIN----------SAVDCNSL------------------SSMPNVSFTIGG----KTFELTPEQYI 264 (317)
T ss_pred cCCcceeCCHHHHHhhh----------ccCCcccc------------------ccCCcEEEEECC----EEEEEChHHeE
Confidence 99999999998877664 13344321 147899999964 89999999999
Q ss_pred EEeCC--ccEEEEEEcCCC--CCCCCceeEcceeeeeeEEEEeCCCCEEeeec
Q 017049 317 VISGR--KNVCLGILNGSE--AEVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 365 (378)
Q Consensus 317 ~~~~~--~~~C~~~~~~~~--~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~ 365 (378)
++..+ ...|+..+...+ ....+.||||++|||++|+|||++++|||||+
T Consensus 265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 265 LKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 86433 357976543221 11245799999999999999999999999996
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.3e-53 Score=398.02 Aligned_cols=300 Identities=16% Similarity=0.300 Sum_probs=245.1
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCC--CCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCC
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGC--TKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQC 92 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c--~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~ 92 (378)
..|+++|.||||+|+++|+|||||+++||+|. .|..| .+..+..|+|++|+ |+.. ..+
T Consensus 7 ~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~Ss---------------T~~~----~~~ 66 (326)
T cd05487 7 TQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS-KCSPLYTACVTHNLYDASDSS---------------TYKE----NGT 66 (326)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCccceEEccC-CCcCcchhhcccCcCCCCCCe---------------eeeE----CCE
Confidence 68999999999999999999999999999988 78653 23367899999994 6664 678
Q ss_pred eeEeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCC------ChHHHHHhhc
Q 017049 93 DYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLREY 166 (378)
Q Consensus 93 ~~~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~------~s~~~~l~~~ 166 (378)
.|++.|++| .+.|.+++|+|+| |+..+ .+.||++.... ...+.....+||||||++. .+++++|++|
T Consensus 67 ~~~~~Yg~g-~~~G~~~~D~v~~----g~~~~-~~~fg~~~~~~-~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~q 139 (326)
T cd05487 67 EFTIHYASG-TVKGFLSQDIVTV----GGIPV-TQMFGEVTALP-AIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQ 139 (326)
T ss_pred EEEEEeCCc-eEEEEEeeeEEEE----CCEEe-eEEEEEEEecc-CCccceeecceEEecCChhhcccCCCCHHHHHHhc
Confidence 999999999 6999999999999 77655 47899988752 2222234689999999854 4689999999
Q ss_pred CCc-cCeEEEEeCCC----CceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEecc-CCCcEEEecC
Q 017049 167 GLI-RNVIGHCIGQN----GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL-KDLTLIFDSG 238 (378)
Q Consensus 167 ~~i-~~~fsl~l~~~----~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~-~~~~~iiDSG 238 (378)
|.| +++||+||.++ ..|.|+|| |++++.|++.|+|+... .+|+|++++|+|+++.+.. .+..++||||
T Consensus 140 g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~----~~w~v~l~~i~vg~~~~~~~~~~~aiiDSG 215 (326)
T cd05487 140 GVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT----GFWQIQMKGVSVGSSTLLCEDGCTAVVDTG 215 (326)
T ss_pred CCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC----ceEEEEecEEEECCEEEecCCCCEEEECCC
Confidence 999 99999999853 47999999 88899999999999765 8999999999999988754 4578999999
Q ss_pred CcceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEEE
Q 017049 239 ASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVI 318 (378)
Q Consensus 239 t~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~ 318 (378)
|++++||.++++++++++++... ..+|..+|+.. ..+|+|+|+|++ ..+.|++++|+++
T Consensus 216 ts~~~lP~~~~~~l~~~~~~~~~-------------~~~y~~~C~~~----~~~P~i~f~fgg----~~~~v~~~~yi~~ 274 (326)
T cd05487 216 ASFISGPTSSISKLMEALGAKER-------------LGDYVVKCNEV----PTLPDISFHLGG----KEYTLSSSDYVLQ 274 (326)
T ss_pred ccchhCcHHHHHHHHHHhCCccc-------------CCCEEEecccc----CCCCCEEEEECC----EEEEeCHHHhEEe
Confidence 99999999999999999865321 11344455542 257999999964 8999999999986
Q ss_pred eCC--ccEEEEEEcCCCC--CCCCceeEcceeeeeeEEEEeCCCCEEeeecC
Q 017049 319 SGR--KNVCLGILNGSEA--EVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 366 (378)
Q Consensus 319 ~~~--~~~C~~~~~~~~~--~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~ 366 (378)
..+ +..|+..+...+. ...+.||||++|||++|+|||++++|||||++
T Consensus 275 ~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 275 DSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred ccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 543 5679765543221 12357999999999999999999999999985
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.4e-52 Score=393.93 Aligned_cols=301 Identities=20% Similarity=0.329 Sum_probs=245.9
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCC--CCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCC
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCT--KPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQC 92 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~--~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~ 92 (378)
..|+++|.||||+|+++|++||||+++||+|. .|..|. +..++.|+|++|+ |+.. ..+
T Consensus 10 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~Ss---------------t~~~----~~~ 69 (329)
T cd05485 10 AQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK-KCSWTNIACLLHNKYDSTKSS---------------TYKK----NGT 69 (329)
T ss_pred CeEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCCCccccCCCeECCcCCC---------------CeEE----CCe
Confidence 78999999999999999999999999999998 886321 2256789999994 5554 667
Q ss_pred eeEeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCCC------hHHHHHhhc
Q 017049 93 DYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI------SIVSQLREY 166 (378)
Q Consensus 93 ~~~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~~------s~~~~l~~~ 166 (378)
.|.+.|++| .+.|.+++|+|+| |+..++++.||++....+. .+.....+||||||++.. +++.+|+++
T Consensus 70 ~~~i~Y~~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~-~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~q 143 (329)
T cd05485 70 EFAIQYGSG-SLSGFLSTDTVSV----GGVSVKGQTFAEAINEPGL-TFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQ 143 (329)
T ss_pred EEEEEECCc-eEEEEEecCcEEE----CCEEECCEEEEEEEecCCc-cccccccceEEEcCCccccccCCCCHHHHHHhC
Confidence 999999999 6899999999999 7888899999999776322 222356899999999653 468999999
Q ss_pred CCc-cCeEEEEeCCC----CceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEeccCCCcEEEecCC
Q 017049 167 GLI-RNVIGHCIGQN----GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGA 239 (378)
Q Consensus 167 ~~i-~~~fsl~l~~~----~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~iiDSGt 239 (378)
++| +++||+||.+. ..|.|+|| |++++.|+++|+|+... .+|.|.+++++++++.+...+..++|||||
T Consensus 144 g~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~----~~~~v~~~~i~v~~~~~~~~~~~~iiDSGt 219 (329)
T cd05485 144 KLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK----GYWQFKMDSVSVGEGEFCSGGCQAIADTGT 219 (329)
T ss_pred CCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc----eEEEEEeeEEEECCeeecCCCcEEEEccCC
Confidence 999 99999999852 46999999 77888999999999764 899999999999999887667789999999
Q ss_pred cceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEEEe
Q 017049 240 SYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS 319 (378)
Q Consensus 240 ~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~~ 319 (378)
+++++|++++++|.+++++... . ..+|..+|... ..+|+|+|+|++ +.+.|++++|+++.
T Consensus 220 t~~~lP~~~~~~l~~~~~~~~~--------~----~~~~~~~C~~~----~~~p~i~f~fgg----~~~~i~~~~yi~~~ 279 (329)
T cd05485 220 SLIAGPVDEIEKLNNAIGAKPI--------I----GGEYMVNCSAI----PSLPDITFVLGG----KSFSLTGKDYVLKV 279 (329)
T ss_pred cceeCCHHHHHHHHHHhCCccc--------c----CCcEEEecccc----ccCCcEEEEECC----EEeEEChHHeEEEe
Confidence 9999999999999988864311 0 12455566543 247999999964 89999999999865
Q ss_pred CC--ccEEEEEEcCCC--CCCCCceeEcceeeeeeEEEEeCCCCEEeeec
Q 017049 320 GR--KNVCLGILNGSE--AEVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 365 (378)
Q Consensus 320 ~~--~~~C~~~~~~~~--~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~ 365 (378)
.. ..+|+..+...+ ....+.||||++|||++|+|||++++|||||+
T Consensus 280 ~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 280 TQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 42 357976443221 11245799999999999999999999999995
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.3e-52 Score=401.43 Aligned_cols=305 Identities=18% Similarity=0.258 Sum_probs=243.7
Q ss_pred eeeeec----ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCC
Q 017049 9 FFFPIF----SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPR 84 (378)
Q Consensus 9 ~~~pl~----~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~ 84 (378)
..+||. .+|+++|+||||||+++|+|||||+++||+|. +|..|.+..++.|+|++|+ |+.
T Consensus 128 ~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~-~C~~~~C~~~~~yd~s~Ss---------------T~~ 191 (453)
T PTZ00147 128 DNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI-KCTTEGCETKNLYDSSKSK---------------TYE 191 (453)
T ss_pred CeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec-CCCcccccCCCccCCccCc---------------ceE
Confidence 456665 89999999999999999999999999999999 8986666678899999993 666
Q ss_pred CCCCCCCCeeEeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCC-CCCCCCcceEEeeCCCC------C
Q 017049 85 CKHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPG-PLSPPDTAGVLGLGRGR------I 157 (378)
Q Consensus 85 ~~~~~~~~~~~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~-~~~~~~~~GilGLg~~~------~ 157 (378)
+ .++.|++.|++| .+.|.+++|+|+| |+.+++ ..|+++....+.. .+.....+||||||++. .
T Consensus 192 ~----~~~~f~i~Yg~G-svsG~~~~DtVti----G~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~ 261 (453)
T PTZ00147 192 K----DGTKVEMNYVSG-TVSGFFSKDLVTI----GNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVD 261 (453)
T ss_pred E----CCCEEEEEeCCC-CEEEEEEEEEEEE----CCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCC
Confidence 5 667999999999 7999999999999 777776 5788877653321 12234689999999965 3
Q ss_pred hHHHHHhhcCCc-cCeEEEEeCC--CCceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEeccCCCc
Q 017049 158 SIVSQLREYGLI-RNVIGHCIGQ--NGRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLT 232 (378)
Q Consensus 158 s~~~~l~~~~~i-~~~fsl~l~~--~~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 232 (378)
+++.+|++|+.| +++||+||.+ ...|.|+|| |++++.|++.|+|+... .+|.|.++ +.+++.. .....
T Consensus 262 p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~----~~W~V~l~-~~vg~~~--~~~~~ 334 (453)
T PTZ00147 262 PYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD----LYWQVDLD-VHFGNVS--SEKAN 334 (453)
T ss_pred CHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC----ceEEEEEE-EEECCEe--cCcee
Confidence 578899999999 9999999985 357999999 88899999999999754 89999998 5777653 34578
Q ss_pred EEEecCCcceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCC
Q 017049 233 LIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPP 312 (378)
Q Consensus 233 ~iiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~ 312 (378)
++|||||+++++|+++++++.+++.+... . .. + .+..+|.. ..+|+|+|.|++ ..++|+|
T Consensus 335 aIiDSGTsli~lP~~~~~ai~~~l~~~~~----~---~~---~-~y~~~C~~-----~~lP~~~f~f~g----~~~~L~p 394 (453)
T PTZ00147 335 VIVDSGTSVITVPTEFLNKFVESLDVFKV----P---FL---P-LYVTTCNN-----TKLPTLEFRSPN----KVYTLEP 394 (453)
T ss_pred EEECCCCchhcCCHHHHHHHHHHhCCeec----C---CC---C-eEEEeCCC-----CCCCeEEEEECC----EEEEECH
Confidence 99999999999999999999998854311 0 00 0 12223432 247999999975 7899999
Q ss_pred CceEEEeC--CccEEEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeecCC
Q 017049 313 EAYLVISG--RKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPED 367 (378)
Q Consensus 313 ~~~~~~~~--~~~~C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~~ 367 (378)
++|+.... ....|+..+...+. ..+.||||++|||++|+|||.+++|||||+++
T Consensus 395 ~~yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 395 EYYLQPIEDIGSALCMLNIIPIDL-EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred HHheeccccCCCcEEEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 99997532 23579754433221 23579999999999999999999999999987
No 15
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-51 Score=395.32 Aligned_cols=331 Identities=31% Similarity=0.610 Sum_probs=270.3
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCC-CCCCCCCCCCCCCCC----cccCCchhccCCCCCCCCCCCCCC
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCT-GCTKPPEKQYKPHKN----IVPCSNPRCAALHWPNPPRCKHPN 89 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~-~c~~~~~~~y~~~~S----~v~c~~~~C~~~~~~~t~~~~~~~ 89 (378)
+.|+++|.||||||+|.|++||||+++||+|. +|. .|..+....|+|++| .+.|.++.|...+.. |.. +
T Consensus 45 ~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~-~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~----~~~-~ 118 (398)
T KOG1339|consen 45 GEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA-PCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS----CSP-N 118 (398)
T ss_pred cccEEEEecCCCCeeeEEEEeCCCCceeeccc-cccccccccCCCccCccccccccccCCCCccccccccC----ccc-C
Confidence 89999999999999999999999999999998 999 798766666999999 589999999986542 333 4
Q ss_pred CCCeeEeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCCChHHHHHhhcCCc
Q 017049 90 DQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLI 169 (378)
Q Consensus 90 ~~~~~~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l~~~~~i 169 (378)
+.|.|.+.|++|+.+.|++++|+|++++.+ ....++++|||+....+..... ...+||||||+...++..|+......
T Consensus 119 ~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~~~~FGc~~~~~g~~~~~-~~~dGIlGLg~~~~S~~~q~~~~~~~ 196 (398)
T KOG1339|consen 119 SSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVPNQTFGCGTNNPGSFGLF-AAFDGILGLGRGSLSVPSQLPSFYNA 196 (398)
T ss_pred CcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccccEEEEeeecCccccccc-cccceEeecCCCCccceeecccccCC
Confidence 999999999997799999999999994221 2667789999999985431111 56899999999999999999998777
Q ss_pred cCeEEEEeCCC-----CceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEE------eccCCCcEEEe
Q 017049 170 RNVIGHCIGQN-----GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKS------CGLKDLTLIFD 236 (378)
Q Consensus 170 ~~~fsl~l~~~-----~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~------~~~~~~~~iiD 236 (378)
.++||+||.++ ..|.|+|| |+.++.+.+.|+|+..... .+|.+.+.+|.|+++. .......+|+|
T Consensus 197 ~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiD 274 (398)
T KOG1339|consen 197 INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIID 274 (398)
T ss_pred ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCccCCCcceEecCCCCEEEE
Confidence 66999999955 37999999 7778889999999999842 4999999999999843 22224889999
Q ss_pred cCCcceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceE
Q 017049 237 SGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYL 316 (378)
Q Consensus 237 SGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~ 316 (378)
|||++++||.++|++|.+++.+.+. . .-........|+...-.. ..+|.|+|+|.. ++.|.+++++|+
T Consensus 275 SGTs~t~lp~~~y~~i~~~~~~~~~---~-~~~~~~~~~~C~~~~~~~-----~~~P~i~~~f~~---g~~~~l~~~~y~ 342 (398)
T KOG1339|consen 275 SGTSLTYLPTSAYNALREAIGAEVS---V-VGTDGEYFVPCFSISTSG-----VKLPDITFHFGG---GAVFSLPPKNYL 342 (398)
T ss_pred CCcceeeccHHHHHHHHHHHHhhee---c-cccCCceeeecccCCCCc-----ccCCcEEEEECC---CcEEEeCccceE
Confidence 9999999999999999999998741 0 000122223455442111 348999999997 599999999999
Q ss_pred EEeCCccE-EEEEEcCCCCCCCCceeEcceeeeeeEEEEeCC-CCEEeeec--CCCC
Q 017049 317 VISGRKNV-CLGILNGSEAEVGENNIIGEIFMQDKMVIYDNE-KQRIGWKP--EDCN 369 (378)
Q Consensus 317 ~~~~~~~~-C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~-~~rigfa~--~~c~ 369 (378)
++...+.. |++.+...+.. ..||||+.|+++++++||.. ++|||||+ ..|+
T Consensus 343 ~~~~~~~~~Cl~~~~~~~~~--~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 343 VEVSDGGGVCLAFFNGMDSG--PLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEECCCCCceeeEEecCCCC--ceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 97766544 99988766422 58999999999999999999 99999999 6664
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.5e-51 Score=395.92 Aligned_cols=305 Identities=19% Similarity=0.292 Sum_probs=241.3
Q ss_pred eeeeec----ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCC
Q 017049 9 FFFPIF----SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPR 84 (378)
Q Consensus 9 ~~~pl~----~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~ 84 (378)
-.+||. .+|+++|.||||||+++|+|||||+++||+|. .|..+.+..++.|+|++|. |+.
T Consensus 127 ~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~-~C~~~~C~~~~~yd~s~Ss---------------T~~ 190 (450)
T PTZ00013 127 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCDSIGCSIKNLYDSSKSK---------------SYE 190 (450)
T ss_pred CceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc-cCCccccccCCCccCccCc---------------ccc
Confidence 345665 88999999999999999999999999999999 8975444577899999993 665
Q ss_pred CCCCCCCCeeEeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCC-CCCCCCcceEEeeCCCC------C
Q 017049 85 CKHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPG-PLSPPDTAGVLGLGRGR------I 157 (378)
Q Consensus 85 ~~~~~~~~~~~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~-~~~~~~~~GilGLg~~~------~ 157 (378)
. .++.+.+.|++| .+.|.+++|+|+| |+++++ ..|+++....... .+.....+||||||++. .
T Consensus 191 ~----~~~~~~i~YG~G-sv~G~~~~Dtv~i----G~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 260 (450)
T PTZ00013 191 K----DGTKVDITYGSG-TVKGFFSKDLVTL----GHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSID 260 (450)
T ss_pred c----CCcEEEEEECCc-eEEEEEEEEEEEE----CCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCC
Confidence 4 667999999999 6999999999999 777666 5788876542211 12224689999999954 3
Q ss_pred hHHHHHhhcCCc-cCeEEEEeCCC--CceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEeccCCCc
Q 017049 158 SIVSQLREYGLI-RNVIGHCIGQN--GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLT 232 (378)
Q Consensus 158 s~~~~l~~~~~i-~~~fsl~l~~~--~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 232 (378)
+++.+|++|++| +++||+||.+. ..|.|+|| |++++.|++.|+|+... .+|.|+++ +.++.... ....
T Consensus 261 p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~----~yW~I~l~-v~~G~~~~--~~~~ 333 (450)
T PTZ00013 261 PIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD----LYWQIDLD-VHFGKQTM--QKAN 333 (450)
T ss_pred CHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC----ceEEEEEE-EEECceec--cccc
Confidence 689999999999 99999999843 57999999 88899999999999754 89999998 67765443 3568
Q ss_pred EEEecCCcceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCC
Q 017049 233 LIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPP 312 (378)
Q Consensus 233 ~iiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~ 312 (378)
|++||||+++++|+++++++++++++... .. . + .+..+|+. ..+|+|+|.|++ ..++|+|
T Consensus 334 aIlDSGTSli~lP~~~~~~i~~~l~~~~~----~~---~---~-~y~~~C~~-----~~lP~i~F~~~g----~~~~L~p 393 (450)
T PTZ00013 334 VIVDSGTTTITAPSEFLNKFFANLNVIKV----PF---L---P-FYVTTCDN-----KEMPTLEFKSAN----NTYTLEP 393 (450)
T ss_pred eEECCCCccccCCHHHHHHHHHHhCCeec----CC---C---C-eEEeecCC-----CCCCeEEEEECC----EEEEECH
Confidence 99999999999999999999998864321 00 0 0 12334432 257999999975 7999999
Q ss_pred CceEEEe--CCccEEEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeecCC
Q 017049 313 EAYLVIS--GRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPED 367 (378)
Q Consensus 313 ~~~~~~~--~~~~~C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~~ 367 (378)
++|+... .++..|+..+...+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 394 ~~Yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 394 EYYMNPLLDVDDTLCMITMLPVDI-DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred HHheehhccCCCCeeEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 9998642 234679755543321 23579999999999999999999999999986
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=7.2e-50 Score=380.80 Aligned_cols=316 Identities=21% Similarity=0.286 Sum_probs=238.4
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCee
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~ 94 (378)
..|+++|.||||+|++.|+|||||+++||+|. +|.. .++.|+|++|+ |++. ..|.|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~~~~----~~~~f~~~~Ss---------------T~~~----~~~~~ 57 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAA-PHPF----IHTYFHRELSS---------------TYRD----LGKGV 57 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcC-CCcc----ccccCCchhCc---------------Cccc----CCceE
Confidence 36999999999999999999999999999988 6633 45789999993 6654 67899
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCcccc--ccEEEeeeeecCCCCCCCCCCcceEEeeCCCC--------ChHHHHHh
Q 017049 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFN--VPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR--------ISIVSQLR 164 (378)
Q Consensus 95 ~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~--~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~--------~s~~~~l~ 164 (378)
++.|++| .+.|.+++|+|+| |+... ..+.|+++...... .......+||||||++. .+++++|+
T Consensus 58 ~i~Yg~G-s~~G~~~~D~v~i----g~~~~~~~~~~~~~~~~~~~~-~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~ 131 (364)
T cd05473 58 TVPYTQG-SWEGELGTDLVSI----PKGPNVTFRANIAAITESENF-FLNGSNWEGILGLAYAELARPDSSVEPFFDSLV 131 (364)
T ss_pred EEEECcc-eEEEEEEEEEEEE----CCCCccceEEeeEEEeccccc-eecccccceeeeecccccccCCCCCCCHHHHHH
Confidence 9999999 7899999999999 43211 12234555433221 11123579999999854 46899999
Q ss_pred hcCCccCeEEEEeCC-----------CCceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEeccC--
Q 017049 165 EYGLIRNVIGHCIGQ-----------NGRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK-- 229 (378)
Q Consensus 165 ~~~~i~~~fsl~l~~-----------~~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~-- 229 (378)
+|+.+.++||++|+. ...|.|+|| |++++.|++.|+|+... .+|.|.+++|+|+++.+...
T Consensus 132 ~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~----~~~~v~l~~i~vg~~~~~~~~~ 207 (364)
T cd05473 132 KQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE----WYYEVIILKLEVGGQSLNLDCK 207 (364)
T ss_pred hccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc----eeEEEEEEEEEECCEecccccc
Confidence 998887799998852 137999999 88899999999999865 78999999999999888642
Q ss_pred ---CCcEEEecCCcceeeChHHHHHHHHHHHHHhcCCCCCCCCCC---CCCCceeeCCccCccccccccccEEEEEcCC-
Q 017049 230 ---DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDD---KTLPICWRGPFKALGQVTEYFKPLALSFTNR- 302 (378)
Q Consensus 230 ---~~~~iiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~---~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~- 302 (378)
...++|||||++++||.+++++|.+++.+.... ...... .....|+.... .....+|+|+|+|.+.
T Consensus 208 ~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~C~~~~~----~~~~~~P~i~~~f~g~~ 280 (364)
T cd05473 208 EYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI---EDFPDGFWLGSQLACWQKGT----TPWEIFPKISIYLRDEN 280 (364)
T ss_pred cccCccEEEeCCCcceeCCHHHHHHHHHHHHhhccc---ccCCccccCcceeecccccC----chHhhCCcEEEEEccCC
Confidence 246999999999999999999999999887531 111110 00113443210 1123589999999752
Q ss_pred -CcceEEEeCCCceEEEeC---CccEEEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeecCCCCccccc
Q 017049 303 -RNSVRLVVPPEAYLVISG---RKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTLLSL 374 (378)
Q Consensus 303 -~~~~~~~l~~~~~~~~~~---~~~~C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~~c~~~~~~ 374 (378)
..+..+.|+|++|+.... .+..|+.+.... ..+.||||+.|||++|+|||.+++|||||+++|...+--
T Consensus 281 ~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~---~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~~ 353 (364)
T cd05473 281 SSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQ---STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDGF 353 (364)
T ss_pred CCceEEEEECHHHhhhhhccCCCcceeeEEeeec---CCCceEEeeeeEcceEEEEECCCCEEeeEecccccccCc
Confidence 113578999999997532 245797543221 134699999999999999999999999999999876643
No 18
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=4.3e-50 Score=368.91 Aligned_cols=266 Identities=19% Similarity=0.352 Sum_probs=223.6
Q ss_pred EEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCeeEe
Q 017049 17 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEI 96 (378)
Q Consensus 17 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~~~ 96 (378)
|+++|+||||||+++|+|||||+++||+|. +|..|.+..+..|++++|+ |+.+. ..+.|.+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~c~~~~~~~~~~y~~~~Ss---------------t~~~~---~~~~~~i 61 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS-ETPAAQQGGHKLYDPSKSS---------------TAKLL---PGATWSI 61 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC-CCCchhhccCCcCCCccCc---------------cceec---CCcEEEE
Confidence 789999999999999999999999999999 9999987778889999983 65542 4679999
Q ss_pred EeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCC---------ChHHHHHhhcC
Q 017049 97 EYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR---------ISIVSQLREYG 167 (378)
Q Consensus 97 ~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~---------~s~~~~l~~~~ 167 (378)
.|++|+.+.|.+++|+|+| |+.+++++.||+++..... .+.....+||||||++. .+++++|.+++
T Consensus 62 ~Y~~G~~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 62 SYGDGSSASGIVYTDTVSI----GGVEVPNQAIELATAVSAS-FFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EeCCCCeEEEEEEEEEEEE----CCEEECCeEEEEEeecCcc-ccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 9999977999999999999 8888899999999887432 12235789999999853 35788899885
Q ss_pred CccCeEEEEeCCCCceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEE-eccCCCcEEEecCCcceee
Q 017049 168 LIRNVIGHCIGQNGRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKS-CGLKDLTLIFDSGASYAYF 244 (378)
Q Consensus 168 ~i~~~fsl~l~~~~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~-~~~~~~~~iiDSGt~~~~l 244 (378)
. +++||++|.++..|.|+|| |++++.|+++|+|+... ..+|.|++++|+|+++. ....+..++|||||+++++
T Consensus 137 ~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~l 212 (278)
T cd06097 137 D-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILL 212 (278)
T ss_pred c-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcC
Confidence 5 8999999997778999999 88899999999999874 28999999999999873 3345788999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEEEeCCccE
Q 017049 245 TSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNV 324 (378)
Q Consensus 245 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~~~~~~~ 324 (378)
|.++++++.+++.+... .. ...+|..+|+. .+|+|+|+|
T Consensus 213 P~~~~~~l~~~l~g~~~----~~------~~~~~~~~C~~------~~P~i~f~~------------------------- 251 (278)
T cd06097 213 PDAIVEAYYSQVPGAYY----DS------EYGGWVFPCDT------TLPDLSFAV------------------------- 251 (278)
T ss_pred CHHHHHHHHHhCcCCcc----cC------CCCEEEEECCC------CCCCEEEEE-------------------------
Confidence 99999999998842211 01 12356666764 168888887
Q ss_pred EEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeec
Q 017049 325 CLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 365 (378)
Q Consensus 325 C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~ 365 (378)
.||||++|||++|+|||++++|||||+
T Consensus 252 --------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.4e-49 Score=362.87 Aligned_cols=247 Identities=40% Similarity=0.713 Sum_probs=216.6
Q ss_pred eEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCeeE
Q 017049 16 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYE 95 (378)
Q Consensus 16 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~~ 95 (378)
.|+++|.||||||++.|+|||||+++||+| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~----------------------------------------------~~~~ 34 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC----------------------------------------------CSYE 34 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC----------------------------------------------CceE
Confidence 599999999999999999999999999964 1678
Q ss_pred eEeCCCCeEEEEEEEEEEEEeecCCcc--ccccEEEeeeeecCCCCCCCCCCcceEEeeCCCCChHHHHHhhcCCccCeE
Q 017049 96 IEYGDGGSSIGALVTDLFPLRFSNGSV--FNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVI 173 (378)
Q Consensus 96 ~~y~~g~~~~G~~~~D~v~l~~~~g~~--~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l~~~~~i~~~f 173 (378)
+.|+||+.+.|.+++|+|+| ++. .++++.|||+....+ +.....+||||||+...++++||..++ ++|
T Consensus 35 ~~Y~dg~~~~G~~~~D~v~~----g~~~~~~~~~~Fg~~~~~~~---~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~F 104 (265)
T cd05476 35 YSYGDGSSTSGVLATETFTF----GDSSVSVPNVAFGCGTDNEG---GSFGGADGILGLGRGPLSLVSQLGSTG---NKF 104 (265)
T ss_pred eEeCCCceeeeeEEEEEEEe----cCCCCccCCEEEEecccccC---CccCCCCEEEECCCCcccHHHHhhccc---Cee
Confidence 89998889999999999999 665 689999999998754 234678999999999999999999887 899
Q ss_pred EEEeCC----CCceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCEEec----------cCCCcEEEec
Q 017049 174 GHCIGQ----NGRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCG----------LKDLTLIFDS 237 (378)
Q Consensus 174 sl~l~~----~~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~----------~~~~~~iiDS 237 (378)
|+||.+ +..|+|+|| |++ +.+++.|+|+........+|.+++++|+|+++.+. .....++|||
T Consensus 105 s~~l~~~~~~~~~G~l~fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DT 183 (265)
T cd05476 105 SYCLVPHDDTGGSSPLILGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDS 183 (265)
T ss_pred EEEccCCCCCCCCCeEEECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeC
Confidence 999985 458999999 666 88999999998863334899999999999999874 2457899999
Q ss_pred CCcceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEE
Q 017049 238 GASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLV 317 (378)
Q Consensus 238 Gt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~ 317 (378)
||++++||++++ |+|+|+|++ +..+.+++++|++
T Consensus 184 GTs~~~lp~~~~-------------------------------------------P~i~~~f~~---~~~~~i~~~~y~~ 217 (265)
T cd05476 184 GTTLTYLPDPAY-------------------------------------------PDLTLHFDG---GADLELPPENYFV 217 (265)
T ss_pred CCcceEcCcccc-------------------------------------------CCEEEEECC---CCEEEeCcccEEE
Confidence 999999999987 467999986 5899999999999
Q ss_pred EeCCccEEEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeecCCC
Q 017049 318 ISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDC 368 (378)
Q Consensus 318 ~~~~~~~C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~~c 368 (378)
....+..|++++... ..+.||||++|||++|++||.+++|||||+++|
T Consensus 218 ~~~~~~~C~~~~~~~---~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 218 DVGEGVVCLAILSSS---SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred ECCCCCEEEEEecCC---CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 766678899887653 356899999999999999999999999999999
No 20
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=7.2e-48 Score=364.45 Aligned_cols=325 Identities=23% Similarity=0.400 Sum_probs=247.6
Q ss_pred ecCCCcE-EEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCC---------CCCCCCCCCCCC
Q 017049 23 VGKPPKL-FDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWP---------NPPRCKHPNDQC 92 (378)
Q Consensus 23 iGtP~q~-~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~---------~t~~~~~~~~~~ 92 (378)
+|||-.+ +.|++||||+++||+|. +|. ...| ..++|.++.|....+. +...|. ++.|
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-~~~------sst~----~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~--~~~C 68 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-AGH------SSTY----QTVPCSSSVCSLANRYHCPGTCGGAPGPGCG--NNTC 68 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-CCC------cCCC----CccCcCChhhccccccCCCccccCCCCCCCC--CCcC
Confidence 6888777 99999999999999988 532 1222 2489999999876532 112453 2568
Q ss_pred eeEeE-eCCCCeEEEEEEEEEEEEeecCCc----cccccEEEeeeeecCCCCCCCCCCcceEEeeCCCCChHHHHHhhcC
Q 017049 93 DYEIE-YGDGGSSIGALVTDLFPLRFSNGS----VFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYG 167 (378)
Q Consensus 93 ~~~~~-y~~g~~~~G~~~~D~v~l~~~~g~----~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l~~~~ 167 (378)
.|... |++|+...|++++|+|+|+..+|+ .+++++.|||+....... + ....+||||||+++.|++.||..++
T Consensus 69 ~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~-~-~~~~dGIlGLg~~~lSl~sql~~~~ 146 (362)
T cd05489 69 TAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKG-L-PPGAQGVAGLGRSPLSLPAQLASAF 146 (362)
T ss_pred eeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccC-C-ccccccccccCCCccchHHHhhhhc
Confidence 88665 778989999999999999765554 268899999998752211 1 1348999999999999999998876
Q ss_pred CccCeEEEEeCC--CCceeEEeC--CCCCC------CCCceeeeCccCCCCCcceEeeeeEEEeCCEEeccC--------
Q 017049 168 LIRNVIGHCIGQ--NGRGVLFLG--DGKVP------SSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK-------- 229 (378)
Q Consensus 168 ~i~~~fsl~l~~--~~~G~l~fG--d~~~~------~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~-------- 229 (378)
..+++||+||.+ ...|.|+|| +..++ .+.+.|+|+........+|.|+|++|+||++.+...
T Consensus 147 ~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~ 226 (362)
T cd05489 147 GVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDR 226 (362)
T ss_pred CCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccc
Confidence 568999999985 358999999 33333 378999999876433479999999999999988642
Q ss_pred --CCcEEEecCCcceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceE
Q 017049 230 --DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVR 307 (378)
Q Consensus 230 --~~~~iiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~ 307 (378)
...++|||||++++||.++|++|.+++.+.+........ .....+.||.............+|+|+|+|.++ +.+
T Consensus 227 ~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~--g~~ 303 (362)
T cd05489 227 LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPA-AAVFPELCYPASALGNTRLGYAVPAIDLVLDGG--GVN 303 (362)
T ss_pred cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCC-CCCCcCccccCCCcCCcccccccceEEEEEeCC--CeE
Confidence 357999999999999999999999999987753211111 111125788753222122234689999999863 489
Q ss_pred EEeCCCceEEEeCCccEEEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeecC
Q 017049 308 LVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 366 (378)
Q Consensus 308 ~~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~ 366 (378)
+.|++++|+++..++..|++++..... ..+.||||+.|||++|++||.+++|||||+.
T Consensus 304 ~~l~~~ny~~~~~~~~~Cl~f~~~~~~-~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 304 WTIFGANSMVQVKGGVACLAFVDGGSE-PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEcCCceEEEcCCCcEEEEEeeCCCC-CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 999999999987777789988765421 1357999999999999999999999999975
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=4e-50 Score=376.33 Aligned_cols=300 Identities=26% Similarity=0.496 Sum_probs=247.6
Q ss_pred eEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCC-CCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCee
Q 017049 16 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGC-TKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (378)
Q Consensus 16 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c-~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~ 94 (378)
+|+++|.||||+|+++|++||||+++||++. .|..| .+.....|++.+|+ +... ..+.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~-~c~~~~~~~~~~~y~~~~S~---------------t~~~----~~~~~ 60 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS-NCNSCSSCASSGFYNPSKSS---------------TFSN----QGKPF 60 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT-TECSHTHHCTSC-BBGGGST---------------TEEE----EEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee-cccccccccccccccccccc---------------cccc----ceeee
Confidence 5999999999999999999999999999988 88776 44577899998883 3332 45689
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCC-------CChHHHHHhhcC
Q 017049 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRG-------RISIVSQLREYG 167 (378)
Q Consensus 95 ~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~-------~~s~~~~l~~~~ 167 (378)
.+.|++| .+.|.+++|+|+| |++.+.++.||++...... .+.....+||||||++ ..+++++|+++|
T Consensus 61 ~~~y~~g-~~~G~~~~D~v~i----g~~~~~~~~f~~~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 61 SISYGDG-SVSGNLVSDTVSI----GGLTIPNQTFGLADSYSGD-PFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp EEEETTE-EEEEEEEEEEEEE----TTEEEEEEEEEEEEEEESH-HHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred eeeccCc-ccccccccceEee----eeccccccceecccccccc-ccccccccccccccCCcccccccCCcceecchhhc
Confidence 9999999 5999999999999 8888899999999995221 1112568999999973 368999999999
Q ss_pred Cc-cCeEEEEeCCCC--ceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCE-EeccCCCcEEEecCCcc
Q 017049 168 LI-RNVIGHCIGQNG--RGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGK-SCGLKDLTLIFDSGASY 241 (378)
Q Consensus 168 ~i-~~~fsl~l~~~~--~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~-~~~~~~~~~iiDSGt~~ 241 (378)
+| +++||++|.+.. .|.|+|| |++++.++++|+|+... .+|.+.+++|.+++. .....+..++||||+++
T Consensus 135 ~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~----~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~ 210 (317)
T PF00026_consen 135 LISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS----GYWSVPLDSISIGGESVFSSSGQQAILDTGTSY 210 (317)
T ss_dssp SSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST----TTTEEEEEEEEETTEEEEEEEEEEEEEETTBSS
T ss_pred cccccccceeeeecccccchheeeccccccccCceeccCcccc----cccccccccccccccccccccceeeeccccccc
Confidence 99 999999999654 7999999 88899999999999954 999999999999998 44445578999999999
Q ss_pred eeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEEEeCC
Q 017049 242 AYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGR 321 (378)
Q Consensus 242 ~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~~~~ 321 (378)
++||.+++++|++++...... ..+..+|+... .+|.|+|.|++ .+|.|++++|+.+...
T Consensus 211 i~lp~~~~~~i~~~l~~~~~~-------------~~~~~~c~~~~----~~p~l~f~~~~----~~~~i~~~~~~~~~~~ 269 (317)
T PF00026_consen 211 IYLPRSIFDAIIKALGGSYSD-------------GVYSVPCNSTD----SLPDLTFTFGG----VTFTIPPSDYIFKIED 269 (317)
T ss_dssp EEEEHHHHHHHHHHHTTEEEC-------------SEEEEETTGGG----GSEEEEEEETT----EEEEEEHHHHEEEESS
T ss_pred ccccchhhHHHHhhhcccccc-------------eeEEEeccccc----ccceEEEeeCC----EEEEecchHhcccccc
Confidence 999999999999999887551 34555565432 47899999985 8999999999987665
Q ss_pred c--cEEEEEEcCCC-CCCCCceeEcceeeeeeEEEEeCCCCEEeeecC
Q 017049 322 K--NVCLGILNGSE-AEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 366 (378)
Q Consensus 322 ~--~~C~~~~~~~~-~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~ 366 (378)
. ..|+..+...+ ....+.+|||.+|||++|++||.+++|||||++
T Consensus 270 ~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 270 GNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 4 37976655421 124578999999999999999999999999985
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.4e-48 Score=359.68 Aligned_cols=269 Identities=25% Similarity=0.435 Sum_probs=226.9
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCee
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~ 94 (378)
..|+++|.||||+|++.|+|||||+++||+ .|
T Consensus 1 ~~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~------------------------------------------------~~ 32 (295)
T cd05474 1 TYYSAELSVGTPPQKVTVLLDTGSSDLWVP------------------------------------------------DF 32 (295)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCCCcceee------------------------------------------------ee
Confidence 379999999999999999999999999994 57
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCCC-----------hHHHHH
Q 017049 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI-----------SIVSQL 163 (378)
Q Consensus 95 ~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~~-----------s~~~~l 163 (378)
++.|++|+.+.|.+++|+|++ ++..++++.|||++.. ...+||||||+... +|+++|
T Consensus 33 ~~~Y~~g~~~~G~~~~D~v~~----g~~~~~~~~fg~~~~~--------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L 100 (295)
T cd05474 33 SISYGDGTSASGTWGTDTVSI----GGATVKNLQFAVANST--------SSDVGVLGIGLPGNEATYGTGYTYPNFPIAL 100 (295)
T ss_pred EEEeccCCcEEEEEEEEEEEE----CCeEecceEEEEEecC--------CCCcceeeECCCCCcccccCCCcCCCHHHHH
Confidence 788999779999999999999 7777899999999885 35799999999664 799999
Q ss_pred hhcCCc-cCeEEEEeCC--CCceeEEeC--CCCCCCCCceeeeCccCCC--CCcceEeeeeEEEeCCEEec----cCCCc
Q 017049 164 REYGLI-RNVIGHCIGQ--NGRGVLFLG--DGKVPSSGVAWTPMLQNSA--DLKHYILGPAELLYSGKSCG----LKDLT 232 (378)
Q Consensus 164 ~~~~~i-~~~fsl~l~~--~~~G~l~fG--d~~~~~g~l~~~p~~~~~~--~~~~w~v~l~~i~v~~~~~~----~~~~~ 232 (378)
++++.| +++||+||.+ ...|.|+|| |++++.+++.|+|+..... ...+|.|.+++|+++++.+. .....
T Consensus 101 ~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~ 180 (295)
T cd05474 101 KKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLP 180 (295)
T ss_pred HHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCcc
Confidence 999999 8999999996 368999999 7888999999999988742 23789999999999988753 34688
Q ss_pred EEEecCCcceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCC
Q 017049 233 LIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPP 312 (378)
Q Consensus 233 ~iiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~ 312 (378)
++|||||++++||.+++++|.+++.+.... . ...+..+|.... . |.|+|+|++ .++.||+
T Consensus 181 ~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~--------~---~~~~~~~C~~~~----~-p~i~f~f~g----~~~~i~~ 240 (295)
T cd05474 181 ALLDSGTTLTYLPSDIVDAIAKQLGATYDS--------D---EGLYVVDCDAKD----D-GSLTFNFGG----ATISVPL 240 (295)
T ss_pred EEECCCCccEeCCHHHHHHHHHHhCCEEcC--------C---CcEEEEeCCCCC----C-CEEEEEECC----eEEEEEH
Confidence 999999999999999999999999765431 0 123455565433 2 899999975 8999999
Q ss_pred CceEEEeC----CccEEEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeecC
Q 017049 313 EAYLVISG----RKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 366 (378)
Q Consensus 313 ~~~~~~~~----~~~~C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~ 366 (378)
++|+++.. .+..|+..+...+ .+.||||.+|||++|++||.+++|||||++
T Consensus 241 ~~~~~~~~~~~~~~~~C~~~i~~~~---~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 241 SDLVLPASTDDGGDGACYLGIQPST---SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred HHhEeccccCCCCCCCeEEEEEeCC---CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 99998654 2567964444432 268999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=8.4e-46 Score=341.42 Aligned_cols=266 Identities=29% Similarity=0.526 Sum_probs=224.1
Q ss_pred EEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCC--CCCCCCcccCCchhccCCCCCCCCCCCCCCCCCee
Q 017049 17 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQ--YKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (378)
Q Consensus 17 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~--y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~ 94 (378)
|+++|.||||+|++.|++||||+++||+|. .|..|.++.... |++..|. +.. +..|.+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~-~c~~~~~~~~~~~~~~~~~s~---------------~~~----~~~~~~ 60 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS-NCTSCSCQKHPRFKYDSSKSS---------------TYK----DTGCTF 60 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC-CCCccccccCCCCccCccCCc---------------eee----cCCCEE
Confidence 789999999999999999999999999999 898887654444 5665552 222 278899
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCCCC------ChHHHHHhhcCC
Q 017049 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLREYGL 168 (378)
Q Consensus 95 ~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~------~s~~~~l~~~~~ 168 (378)
++.|++| .+.|.+++|+|+| ++..++++.|||++..... ......+||||||+.. .+++++|.+++.
T Consensus 61 ~~~Y~~g-~~~g~~~~D~v~~----~~~~~~~~~fg~~~~~~~~--~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~ 133 (283)
T cd05471 61 SITYGDG-SVTGGLGTDTVTI----GGLTIPNQTFGCATSESGD--FSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGL 133 (283)
T ss_pred EEEECCC-eEEEEEEEeEEEE----CCEEEeceEEEEEeccCCc--ccccccceEeecCCcccccccCCCHHHHHHHCCC
Confidence 9999998 8999999999999 7777899999999988542 2236789999999987 799999999999
Q ss_pred c-cCeEEEEeCC----CCceeEEeC--CCCCCCCCceeeeCccCCCCCcceEeeeeEEEeCCE--EeccCCCcEEEecCC
Q 017049 169 I-RNVIGHCIGQ----NGRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGK--SCGLKDLTLIFDSGA 239 (378)
Q Consensus 169 i-~~~fsl~l~~----~~~G~l~fG--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~--~~~~~~~~~iiDSGt 239 (378)
| +++||+||.+ ...|.|+|| |++++.+++.|+|+.... ..+|.+.+++|.+++. ........++|||||
T Consensus 134 i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt 211 (283)
T cd05471 134 ISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNG--PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGT 211 (283)
T ss_pred CCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCC--CCEEEEEeCeEEECCceeeecCCCcEEEEecCC
Confidence 9 9999999996 379999999 777889999999999852 2899999999999997 445567899999999
Q ss_pred cceeeChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCceeeCCccCccccccccccEEEEEcCCCcceEEEeCCCceEEEe
Q 017049 240 SYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS 319 (378)
Q Consensus 240 ~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~~ 319 (378)
++++||.+++++|++++.+.... ...|+..+|.. ...+|+|+|+|
T Consensus 212 ~~~~lp~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~----~~~~p~i~f~f-------------------- 256 (283)
T cd05471 212 SLIYLPSSVYDAILKALGAAVSS-----------SDGGYGVDCSP----CDTLPDITFTF-------------------- 256 (283)
T ss_pred CCEeCCHHHHHHHHHHhCCcccc-----------cCCcEEEeCcc----cCcCCCEEEEE--------------------
Confidence 99999999999999999876541 12233333322 23578999998
Q ss_pred CCccEEEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeec
Q 017049 320 GRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 365 (378)
Q Consensus 320 ~~~~~C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~ 365 (378)
.+|||.+|||++|++||.+++|||||+
T Consensus 257 -------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999996
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.95 E-value=7.2e-27 Score=196.84 Aligned_cols=156 Identities=38% Similarity=0.717 Sum_probs=123.3
Q ss_pred EEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCC----cccCCchhccCCCCCCCCCCCCCCCCC
Q 017049 17 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN----IVPCSNPRCAALHWPNPPRCKHPNDQC 92 (378)
Q Consensus 17 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S----~v~c~~~~C~~~~~~~t~~~~~~~~~~ 92 (378)
|+++|.||||+|++.|++||||.++|++|. .+.|+|.+| .|+|.++.|...+.. ...|...+..|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~----------~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP----------DPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSS-BTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC----------CcccCCccCCcccccCCCCcchhhcccc-cccCCCCcCcc
Confidence 899999999999999999999999999872 367898888 599999999876542 12333335889
Q ss_pred eeEeEeCCCCeEEEEEEEEEEEEeecCCc-cccccEEEeeeeecCCCCCCCCCCcceEEeeCCCCChHHHHHhhcCCccC
Q 017049 93 DYEIEYGDGGSSIGALVTDLFPLRFSNGS-VFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRN 171 (378)
Q Consensus 93 ~~~~~y~~g~~~~G~~~~D~v~l~~~~g~-~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l~~~~~i~~ 171 (378)
.|.+.|.+++...|.+++|+|+++..+++ ....++.|||+....+.. ...+||||||+.+.||+.||.++ ..+
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~----~~~~GilGLg~~~~Sl~sQl~~~--~~~ 143 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF----YGADGILGLGRGPLSLPSQLASS--SGN 143 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS----TTEEEEEE-SSSTTSHHHHHHHH----S
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC----cCCCcccccCCCcccHHHHHHHh--cCC
Confidence 99999999999999999999999866432 456899999999985332 37899999999999999999988 678
Q ss_pred eEEEEeCC---CCceeEEeCC
Q 017049 172 VIGHCIGQ---NGRGVLFLGD 189 (378)
Q Consensus 172 ~fsl~l~~---~~~G~l~fGd 189 (378)
+||+||.+ ...|.|+|||
T Consensus 144 ~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 144 KFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEEB-S-SSSSEEEEEECS
T ss_pred eEEEECCCCCCCCCEEEEeCc
Confidence 99999986 5799999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.90 E-value=7.1e-23 Score=172.39 Aligned_cols=151 Identities=25% Similarity=0.444 Sum_probs=116.4
Q ss_pred ceEeeeeEEEeCCEEeccC---------CCcEEEecCCcceeeChHHHHHHHHHHHHHhcCCCCCC-CCCCCCCCceeeC
Q 017049 211 HYILGPAELLYSGKSCGLK---------DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKL-APDDKTLPICWRG 280 (378)
Q Consensus 211 ~w~v~l~~i~v~~~~~~~~---------~~~~iiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~c~~~ 280 (378)
+|.|+|.+|+||++++..+ ...++|||||++++||+++|+++.+++...+......+ ......+..||..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 4899999999999998663 35799999999999999999999999999987433222 3456677899998
Q ss_pred CccCccccccccccEEEEEcCCCcceEEEeCCCceEEEeCCccEEEEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCE
Q 017049 281 PFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQR 360 (378)
Q Consensus 281 ~~~~~~~~~~~~P~l~~~f~~~~~~~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~r 360 (378)
+..........+|+|+|+|.+ |..+.|++++|++...++..|+++... +....+..|||..+|+++.++||.+++|
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~---ga~l~l~~~~y~~~~~~~~~Cla~~~~-~~~~~~~~viG~~~~~~~~v~fDl~~~~ 156 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEG---GADLTLPPENYFVQVSPGVFCLAFVPS-DADDDGVSVIGNFQQQNYHVVFDLENGR 156 (161)
T ss_dssp GCS-EETTEESS--EEEEETT---SEEEEE-HHHHEEEECTTEEEESEEEE-TSTTSSSEEE-HHHCCTEEEEEETTTTE
T ss_pred cccccccccccCCeEEEEEeC---CcceeeeccceeeeccCCCEEEEEEcc-CCCCCCcEEECHHHhcCcEEEEECCCCE
Confidence 653334456689999999998 699999999999988888999999987 1224578999999999999999999999
Q ss_pred Eeeec
Q 017049 361 IGWKP 365 (378)
Q Consensus 361 igfa~ 365 (378)
|||+|
T Consensus 157 igF~~ 161 (161)
T PF14541_consen 157 IGFAP 161 (161)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=4.9e-22 Score=156.31 Aligned_cols=108 Identities=31% Similarity=0.606 Sum_probs=90.5
Q ss_pred EEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCC-CCCCCcccCCchhccCCCCCCCCCCCCCCCCCeeEeE
Q 017049 19 VNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQY-KPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEIE 97 (378)
Q Consensus 19 ~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y-~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~~~~ 97 (378)
++|.||||||++.|+|||||+++||+|. +|..|..+....| ++++|. +++- ..|.|.+.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~-~c~~~~~~~~~~~~~~~~ss---------------t~~~----~~~~~~~~ 60 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV-DCQSLAIYSHSSYDDPSASS---------------TYSD----NGCTFSIT 60 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC-CCCCcccccccccCCcCCCC---------------CCCC----CCcEEEEE
Confidence 4799999999999999999999999999 8988876666666 888883 4442 67899999
Q ss_pred eCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEee
Q 017049 98 YGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGL 152 (378)
Q Consensus 98 y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGL 152 (378)
|++| .+.|.+++|+|+| |+..++++.|||++...+.. +.....+|||||
T Consensus 61 Y~~g-~~~g~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~-~~~~~~~GilGL 109 (109)
T cd05470 61 YGTG-SLSGGLSTDTVSI----GDIEVVGQAFGCATDEPGAT-FLPALFDGILGL 109 (109)
T ss_pred eCCC-eEEEEEEEEEEEE----CCEEECCEEEEEEEecCCcc-ccccccccccCC
Confidence 9999 7889999999999 77778999999999885432 223468999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.13 E-value=9.3e-06 Score=61.51 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=66.3
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCee
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~ 94 (378)
+.|++++.|+ ++++++++|||++.+||..+ ....+. . + . ......
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~-~~~~l~-----~--~-~------------------------~~~~~~ 45 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEE-LAERLG-----L--P-L------------------------TLGGKV 45 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcC-----C--C-c------------------------cCCCcE
Confidence 4689999999 79999999999999999643 111110 0 0 0 022356
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCC
Q 017049 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGR 154 (378)
Q Consensus 95 ~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~ 154 (378)
.+...+|.........+.++| |+....++.+..++.... ..+||||+.+
T Consensus 46 ~~~~~~G~~~~~~~~~~~i~i----g~~~~~~~~~~v~d~~~~-------~~~gIlG~d~ 94 (96)
T cd05483 46 TVQTANGRVRAARVRLDSLQI----GGITLRNVPAVVLPGDAL-------GVDGLLGMDF 94 (96)
T ss_pred EEEecCCCccceEEEcceEEE----CCcEEeccEEEEeCCccc-------CCceEeChHH
Confidence 677777766666666899999 888788888877766511 4799999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.41 E-value=0.00097 Score=52.95 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=62.6
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCee
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~ 94 (378)
+.|++++.|. ++++.+++|||++.+.+.... -..- ..++ . +.....
T Consensus 10 g~~~v~~~In--G~~~~flVDTGAs~t~is~~~-A~~L------gl~~---------------------~----~~~~~~ 55 (121)
T TIGR02281 10 GHFYATGRVN--GRNVRFLVDTGATSVALNEED-AQRL------GLDL---------------------N----RLGYTV 55 (121)
T ss_pred CeEEEEEEEC--CEEEEEEEECCCCcEEcCHHH-HHHc------CCCc---------------------c----cCCceE
Confidence 8999999998 689999999999999885330 0000 0010 0 012244
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeCC
Q 017049 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGR 154 (378)
Q Consensus 95 ~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg~ 154 (378)
.+.-..|......+.-|.+++ |+....|+.+..+... ...+|+||+.+
T Consensus 56 ~~~ta~G~~~~~~~~l~~l~i----G~~~~~nv~~~v~~~~--------~~~~~LLGm~f 103 (121)
T TIGR02281 56 TVSTANGQIKAARVTLDRVAI----GGIVVNDVDAMVAEGG--------ALSESLLGMSF 103 (121)
T ss_pred EEEeCCCcEEEEEEEeCEEEE----CCEEEeCcEEEEeCCC--------cCCceEcCHHH
Confidence 555556644445568899999 8888889987766432 12479999863
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.88 E-value=0.0088 Score=44.30 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=55.0
Q ss_pred EEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCeeEeEe
Q 017049 19 VNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEIEY 98 (378)
Q Consensus 19 ~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~~~~y 98 (378)
+++.|+ .+++++++|||++.+.|.-. -..... ..+ .. ......+.-
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~-~~~~l~------~~~---------------------~~----~~~~~~~~~ 46 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS-LAKKLG------LKP---------------------RP----KSVPISVSG 46 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH-HHHHcC------CCC---------------------cC----CceeEEEEe
Confidence 357777 68999999999998888432 100000 000 00 111344455
Q ss_pred CCCCeEEEEEEEEEEEEeecCCccccccEEEeeeeecCCCCCCCCCCcceEEeeC
Q 017049 99 GDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLG 153 (378)
Q Consensus 99 ~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GilGLg 153 (378)
.+|........-+.+++ |+....++.|-..... ...+||||+-
T Consensus 47 ~~g~~~~~~~~~~~i~i----g~~~~~~~~~~v~~~~--------~~~~~iLG~d 89 (90)
T PF13650_consen 47 AGGSVTVYRGRVDSITI----GGITLKNVPFLVVDLG--------DPIDGILGMD 89 (90)
T ss_pred CCCCEEEEEEEEEEEEE----CCEEEEeEEEEEECCC--------CCCEEEeCCc
Confidence 55644555566778999 7777778877666521 4679999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.89 E-value=0.07 Score=42.47 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=26.2
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeC
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQC 45 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~ 45 (378)
..+++++.|+ ++++++++|||++.+++.-
T Consensus 15 ~~~~v~~~In--g~~~~~LvDTGAs~s~Is~ 43 (124)
T cd05479 15 PMLYINVEIN--GVPVKAFVDSGAQMTIMSK 43 (124)
T ss_pred eEEEEEEEEC--CEEEEEEEeCCCceEEeCH
Confidence 7789999999 7899999999999999953
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.40 E-value=0.54 Score=37.34 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=23.1
Q ss_pred CceeEcceeeeeeEEEEeCCCCEEee
Q 017049 338 ENNIIGEIFMQDKMVIYDNEKQRIGW 363 (378)
Q Consensus 338 ~~~iLG~~fl~~~y~vfD~~~~rigf 363 (378)
...|||.+||+.+-.+.|+.+.+|-|
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEEC
Confidence 35799999999999999999998854
No 32
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=93.06 E-value=0.67 Score=34.12 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=20.7
Q ss_pred EEeecCCCcEEEEEEecCCCceeEeCC
Q 017049 20 NLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (378)
Q Consensus 20 ~i~iGtP~q~~~v~~DTGS~~~wv~~~ 46 (378)
.+.|. ++++++++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 45666 68999999999999999644
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.36 E-value=0.17 Score=37.76 Aligned_cols=28 Identities=36% Similarity=0.460 Sum_probs=24.7
Q ss_pred EEEEEeecCCCcEEEEEEecCCCceeEeCC
Q 017049 17 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (378)
Q Consensus 17 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~ 46 (378)
|++++.|+ ++++++.+||||+.+++.-+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57899999 79999999999999999543
No 34
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=88.77 E-value=1 Score=36.32 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=25.8
Q ss_pred ceeEcceeeeeeEEEEeCCCCEEeeecC
Q 017049 339 NNIIGEIFMQDKMVIYDNEKQRIGWKPE 366 (378)
Q Consensus 339 ~~iLG~~fl~~~y~vfD~~~~rigfa~~ 366 (378)
..|||.++|+.+..+-|+.+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 5899999999999999999999999764
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.98 E-value=1.1 Score=31.72 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=26.7
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCC
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~ 46 (378)
+.+++.+.|| ++.+..++|||++-..|+.+
T Consensus 7 g~~~v~~~I~--g~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 7 GLMYVPVSIG--GVQVKALVDTGATHNFISES 36 (72)
T ss_pred CEEEEEEEEC--CEEEEEEEeCCCcceecCHH
Confidence 6789999999 69999999999999999644
No 36
>PF13650 Asp_protease_2: Aspartyl protease
Probab=86.17 E-value=1.2 Score=32.51 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=24.4
Q ss_pred EEeCCEEeccCCCcEEEecCCcceeeChHHHHHH
Q 017049 219 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (378)
Q Consensus 219 i~v~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 252 (378)
++|||+++ .++||||++.+.++.++++++
T Consensus 3 v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 66788755 689999999999999888776
No 37
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=85.14 E-value=1.7 Score=33.47 Aligned_cols=24 Identities=13% Similarity=0.385 Sum_probs=20.7
Q ss_pred CceeEcceeeeeeEEEEeCCCCEE
Q 017049 338 ENNIIGEIFMQDKMVIYDNEKQRI 361 (378)
Q Consensus 338 ~~~iLG~~fl~~~y~vfD~~~~ri 361 (378)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 368999999999999999987653
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=84.66 E-value=2.4 Score=33.48 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=27.4
Q ss_pred cceEeeeeEEEeCCEEeccCCCcEEEecCCcceeeChHHHHHH
Q 017049 210 KHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (378)
Q Consensus 210 ~~w~v~l~~i~v~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 252 (378)
+.+.++ +.|||+.+ .+++|||++.+.++.++.+++
T Consensus 10 g~~~v~---~~InG~~~-----~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRNV-----RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 555444 66788754 689999999999999988765
No 39
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.61 E-value=2.5 Score=29.88 Aligned_cols=29 Identities=14% Similarity=0.374 Sum_probs=25.1
Q ss_pred EEeCCEEeccCCCcEEEecCCcceeeChHHHHHH
Q 017049 219 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (378)
Q Consensus 219 i~v~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 252 (378)
+.|+|..+ .+++|||++..+++.+.++++
T Consensus 13 ~~I~g~~~-----~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-----KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-----EEEEeCCCcceecCHHHHHHh
Confidence 66777666 589999999999999999887
No 40
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=82.38 E-value=2.3 Score=31.47 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=25.8
Q ss_pred EEEeCCEEeccCCCcEEEecCCcceeeChHHHHHH
Q 017049 218 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (378)
Q Consensus 218 ~i~v~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 252 (378)
.+.|||+.+ .+++|||++...++.+.+.++
T Consensus 4 ~~~Ing~~i-----~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL-----KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE-----EEEEcCCcceEEeCHHHHHHh
Confidence 367888877 579999999999999998876
No 41
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=81.49 E-value=2.9 Score=35.88 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=53.4
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCee
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 94 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~ 94 (378)
+.|.++..|- +|+++.++|||.+.+-+.-. .- .+-.++... .+.++
T Consensus 104 GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~-dA------~RlGid~~~-------------------------l~y~~ 149 (215)
T COG3577 104 GHFEANGRVN--GKKVDFLVDTGATSVALNEE-DA------RRLGIDLNS-------------------------LDYTI 149 (215)
T ss_pred CcEEEEEEEC--CEEEEEEEecCcceeecCHH-HH------HHhCCCccc-------------------------cCCce
Confidence 8999999998 89999999999999888533 10 111222211 33456
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCccccccEE
Q 017049 95 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLT 128 (378)
Q Consensus 95 ~~~y~~g~~~~G~~~~D~v~l~~~~g~~~~~~~~ 128 (378)
.+.-.+|..-...+--|.|.| |++...++.
T Consensus 150 ~v~TANG~~~AA~V~Ld~v~I----G~I~~~nV~ 179 (215)
T COG3577 150 TVSTANGRARAAPVTLDRVQI----GGIRVKNVD 179 (215)
T ss_pred EEEccCCccccceEEeeeEEE----ccEEEcCch
Confidence 666677855566788999999 877676664
No 42
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=80.59 E-value=2.7 Score=31.61 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=23.4
Q ss_pred EEEEEeecCCCcEEEEEEecCCCceeEeCC
Q 017049 17 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (378)
Q Consensus 17 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~ 46 (378)
-+++|.|. .+++++++||||+.+-|+..
T Consensus 6 p~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 6 PYITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp SEEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred ceEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 35778888 68999999999999888644
No 43
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=79.03 E-value=17 Score=34.33 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=23.6
Q ss_pred ceEEEEEeecCCC----cEE-EEEEecCCCceeEeCC
Q 017049 15 SYFAVNLTVGKPP----KLF-DFDFDTGSDLTWVQCD 46 (378)
Q Consensus 15 ~~y~~~i~iGtP~----q~~-~v~~DTGS~~~wv~~~ 46 (378)
+.-++.|+|=.|+ |.+ ++++||||.=|-|..+
T Consensus 22 N~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~s 58 (370)
T PF11925_consen 22 NIPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFAS 58 (370)
T ss_pred cceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHh
Confidence 5557777776664 555 8999999998888654
No 44
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=79.02 E-value=23 Score=29.43 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=24.2
Q ss_pred EEEEEeecCCCcEEEEEEecCCCceeEeCC
Q 017049 17 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (378)
Q Consensus 17 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~ 46 (378)
=...+.++.-..+++++|||||+..+|...
T Consensus 33 ~T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 33 KTAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred cEEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 345666677789999999999999999654
No 45
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=77.85 E-value=4.4 Score=29.79 Aligned_cols=30 Identities=17% Similarity=0.422 Sum_probs=24.2
Q ss_pred EEEeCCEEeccCCCcEEEecCCcceeeChHHHHHH
Q 017049 218 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (378)
Q Consensus 218 ~i~v~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 252 (378)
.+.+|++++ .++||||++.+.++.+..+++
T Consensus 6 ~v~i~~~~~-----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 366777655 689999999999999877665
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=75.66 E-value=4.4 Score=29.66 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=24.8
Q ss_pred EEeCCEEeccCCCcEEEecCCcceeeChHHHHHH
Q 017049 219 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (378)
Q Consensus 219 i~v~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 252 (378)
+.|||+.+ ..++|||.+.+.++++..+++
T Consensus 3 v~InG~~~-----~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-----VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-----EEEEECCCCeEEECHHHhhhc
Confidence 56788766 579999999999999998876
No 47
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=71.29 E-value=5.8 Score=29.29 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=20.6
Q ss_pred EEeecCCCcEEEEEEecCCCceeEeC
Q 017049 20 NLTVGKPPKLFDFDFDTGSDLTWVQC 45 (378)
Q Consensus 20 ~i~iGtP~q~~~v~~DTGS~~~wv~~ 45 (378)
.+.|+ +|.+.+++|||+.++.+.-
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEcc
Confidence 46677 7999999999999999963
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=67.11 E-value=7.2 Score=29.19 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=21.6
Q ss_pred eEEEeCCEEeccCCCcEEEecCCcceeeChHH
Q 017049 217 AELLYSGKSCGLKDLTLIFDSGASYAYFTSRV 248 (378)
Q Consensus 217 ~~i~v~~~~~~~~~~~~iiDSGt~~~~lp~~~ 248 (378)
-.|.++|+.+ .+++|||+....++.+.
T Consensus 8 i~v~i~g~~i-----~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 8 ITVKINGKKI-----KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEETTEEE-----EEEEETTBSSEEESSGG
T ss_pred EEEeECCEEE-----EEEEecCCCcceecccc
Confidence 3467777766 68999999999999753
No 49
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=64.77 E-value=30 Score=26.50 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=20.1
Q ss_pred EEEeecCCCc----EEEEEEecCCCcee-Ee
Q 017049 19 VNLTVGKPPK----LFDFDFDTGSDLTW-VQ 44 (378)
Q Consensus 19 ~~i~iGtP~q----~~~v~~DTGS~~~w-v~ 44 (378)
+++.|..|.| ++++++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 6788888832 68999999999764 54
No 50
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=59.39 E-value=12 Score=28.02 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=23.9
Q ss_pred EEeCCEEeccCCCcEEEecCCcceeeChHHHHHHH
Q 017049 219 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIV 253 (378)
Q Consensus 219 i~v~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~ 253 (378)
+.++|+ ....+.+|||++...+|...++.+.
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhhc
Confidence 456663 2347899999999999998887765
No 51
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=59.30 E-value=14 Score=29.37 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=23.2
Q ss_pred EEeCCEEeccCCCcEEEecCCcceeeChHHHHHH
Q 017049 219 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (378)
Q Consensus 219 i~v~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 252 (378)
+++||..+ .|++|||+..+.++.+..+++
T Consensus 29 ~~ing~~v-----kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPV-----KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEE-----EEEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEE-----EEEEeCCCCccccCHHHHHHc
Confidence 66788876 699999999999999998874
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=51.80 E-value=26 Score=27.79 Aligned_cols=30 Identities=20% Similarity=0.146 Sum_probs=22.3
Q ss_pred ceEEEEEeecCCCcEEEEEEecCCCceeEeCC
Q 017049 15 SYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 46 (378)
Q Consensus 15 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~ 46 (378)
...|++++|. ++++++.+|||+..+-+.-.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHH
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHH
Confidence 6789999999 79999999999999888533
No 53
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=51.12 E-value=25 Score=30.38 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=27.1
Q ss_pred cceEeeeeEEEeCCEEeccCCCcEEEecCCcceeeChHHHHHH
Q 017049 210 KHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (378)
Q Consensus 210 ~~w~v~l~~i~v~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 252 (378)
++|.+ ...|||+.+ ..++|||.+.+.++++...++
T Consensus 104 GHF~a---~~~VNGk~v-----~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 104 GHFEA---NGRVNGKKV-----DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CcEEE---EEEECCEEE-----EEEEecCcceeecCHHHHHHh
Confidence 55444 367888887 569999999999998876654
No 54
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=47.14 E-value=1.2e+02 Score=22.55 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=40.1
Q ss_pred cEEEEEEecCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccCCchhccCCCCCCCCCCCCCCCCCeeEeEeCCCCeEEEE
Q 017049 28 KLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEIEYGDGGSSIGA 107 (378)
Q Consensus 28 q~~~v~~DTGS~~~wv~~~~~c~~c~~~~~~~y~~~~S~v~c~~~~C~~~~~~~t~~~~~~~~~~~~~~~y~~g~~~~G~ 107 (378)
-..++++|||+...-||.. .+.. . . ..+.+.+.=..| ...-.
T Consensus 8 s~~~fLVDTGA~vSviP~~-~~~~------------------------------~-~-----~~~~~~l~AANg-t~I~t 49 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPAS-STKK------------------------------S-L-----KPSPLTLQAANG-TPIAT 49 (89)
T ss_pred CCcEEEEeCCCceEeeccc-cccc------------------------------c-c-----cCCceEEEeCCC-CeEee
Confidence 4578999999999999755 1110 0 0 333556655666 66677
Q ss_pred EEEEEEEEeecCCccccccEEEeeeee
Q 017049 108 LVTDLFPLRFSNGSVFNVPLTFGCGYN 134 (378)
Q Consensus 108 ~~~D~v~l~~~~g~~~~~~~~fg~~~~ 134 (378)
+++-.+++.- |-.......|-.++.
T Consensus 50 yG~~~l~ldl--Glrr~~~w~FvvAdv 74 (89)
T cd06094 50 YGTRSLTLDL--GLRRPFAWNFVVADV 74 (89)
T ss_pred eeeEEEEEEc--CCCcEEeEEEEEcCC
Confidence 7777777743 333233455555444
No 55
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=40.25 E-value=22 Score=27.93 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEecCCc-ceeeChHHHHHHHHHH
Q 017049 233 LIFDSGAS-YAYFTSRVYQEIVSLI 256 (378)
Q Consensus 233 ~iiDSGt~-~~~lp~~~~~~l~~~i 256 (378)
.++|||-+ ++.+|.++++++-...
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~~~~ 53 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLGLPL 53 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcCCCc
Confidence 48999999 9999999998775433
No 56
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=39.53 E-value=88 Score=27.06 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=20.1
Q ss_pred CceeEcceeeeeeEEEEeCCCCEEeeec
Q 017049 338 ENNIIGEIFMQDKMVIYDNEKQRIGWKP 365 (378)
Q Consensus 338 ~~~iLG~~fl~~~y~vfD~~~~rigfa~ 365 (378)
-..|||.+|+|.|.=....+ .+|-|..
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 46899999999887655554 4677765
No 57
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=37.89 E-value=95 Score=29.26 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=30.6
Q ss_pred E-EEEEcCCCCCCCCceeEcceeeeeeEEEEeCCCCEEeeecC
Q 017049 325 C-LGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 366 (378)
Q Consensus 325 C-~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfa~~ 366 (378)
| +.++... .-...||...||++--.-|++++++-|+..
T Consensus 308 c~ftV~d~~----~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 308 CSFTVLDRR----DMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred cceEEecCC----CcchhhhHHHHHhccceeecccCeEEecCC
Confidence 7 5666544 245799999999999999999999888765
No 58
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=28.70 E-value=78 Score=29.34 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=25.1
Q ss_pred eeeec--ceEEEE---EeecCC-----CcEEEEEEecCCCceeEeCC
Q 017049 10 FFPIF--SYFAVN---LTVGKP-----PKLFDFDFDTGSDLTWVQCD 46 (378)
Q Consensus 10 ~~pl~--~~y~~~---i~iGtP-----~q~~~v~~DTGS~~~wv~~~ 46 (378)
-+|+. .+|.++ |.||.. .+...++||||++.+++|-.
T Consensus 181 ~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 181 YVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred EEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 34554 566665 577742 23457999999999999743
No 59
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=25.09 E-value=1.1e+02 Score=25.45 Aligned_cols=24 Identities=21% Similarity=0.578 Sum_probs=19.5
Q ss_pred CCcEEEecCCcceeeChHHHHHHH
Q 017049 230 DLTLIFDSGASYAYFTSRVYQEIV 253 (378)
Q Consensus 230 ~~~~iiDSGt~~~~lp~~~~~~l~ 253 (378)
...++||||++..+.-.++.++|-
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhC
Confidence 357899999999998888777653
No 60
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=23.73 E-value=1.2e+02 Score=24.40 Aligned_cols=28 Identities=7% Similarity=0.165 Sum_probs=22.3
Q ss_pred eEEEEEeecCCCcEEEEEEecCCCceeEeC
Q 017049 16 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQC 45 (378)
Q Consensus 16 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~ 45 (378)
.-.+.+.|. .++..++||+|++..+|..
T Consensus 21 vi~g~~~I~--~~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 21 VITGTFLIN--SIPASVLIDSGATHSFISS 48 (135)
T ss_pred eEEEEEEec--cEEEEEEEecCCCcEEccH
Confidence 345667777 4899999999999999953
No 61
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=22.71 E-value=1.2e+02 Score=28.26 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=26.1
Q ss_pred eeeeeec--ceEEEE---EeecCC---CcEEEEEEecCCCceeEeCC
Q 017049 8 FFFFPIF--SYFAVN---LTVGKP---PKLFDFDFDTGSDLTWVQCD 46 (378)
Q Consensus 8 ~~~~pl~--~~y~~~---i~iGtP---~q~~~v~~DTGS~~~wv~~~ 46 (378)
...+|+. .+|.++ +.||.- .+...++||||++.+.+|-.
T Consensus 181 l~~~p~~~~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~~ 227 (329)
T cd05485 181 FTYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPVD 227 (329)
T ss_pred eEEEEcCCceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCHH
Confidence 3445655 666665 467742 23357999999999999743
No 62
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=21.32 E-value=1.2e+02 Score=23.08 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=22.0
Q ss_pred EeCCEEeccCCCcEEEecCCcceeeChHHHHHH
Q 017049 220 LYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 252 (378)
Q Consensus 220 ~v~~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l 252 (378)
++||..+ .|.+|||+..+.+..+-.++.
T Consensus 4 k~nG~~v-----kAfVDsGaQ~timS~~caerc 31 (103)
T cd05480 4 QCAGKEL-----RALVDTGCQYNLISAACLDRL 31 (103)
T ss_pred eECCEEE-----EEEEecCCchhhcCHHHHHHc
Confidence 4556555 689999999999998877753
Done!