BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017050
(378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UHX9|CI114_MOUSE Uncharacterized protein C9orf114 homolog OS=Mus musculus
GN=D2Wsu81e PE=2 SV=1
Length = 385
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/307 (46%), Positives = 189/307 (61%), Gaps = 8/307 (2%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T+SVA+PGSI+DN QS EL T LAGQIARA TIF +DE+VVFD + S
Sbjct: 75 TLSVALPGSILDNAQSPELRTYLAGQIARACTIFCVDEIVVFDEEGQDTK----SVEGEF 130
Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
+ L R+LQYLE PQYLRKA F H L+F G+L PLD+PHH+R+ E + F
Sbjct: 131 RGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGILNPLDSPHHMRQDEESEF 190
Query: 182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPR-QVVPP 240
REGV + G+LV+ G+ K V +D+ LDPG+RVTV + + + + + VV
Sbjct: 191 REGVVVDRPTKAGHGSLVNCGMKKEVKIDKKLDPGLRVTVRLNQQQLPECKTYKGTVVSS 250
Query: 241 SKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHL 299
P+ ++G+YWGY VR A +S+VF ++ GYD IGTSE G V S+ LP+FRH
Sbjct: 251 QDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQ--LPSFRHA 308
Query: 300 LIAFGGLAGLEESIEEDDGLKRKNAREVFHSYFNTCPHQGSRTIRTEEAIFISLQYFQEP 359
L+ FGGL GLE +++ D L+ + +F Y NTC QGSRTIRTEEAI ISL Q
Sbjct: 309 LVVFGGLQGLEAAVDADPNLEVADPSVLFDFYVNTCLSQGSRTIRTEEAILISLAALQPG 368
Query: 360 ISRALRR 366
+++ R
Sbjct: 369 LTQVGSR 375
>sp|Q5T280|CI114_HUMAN Uncharacterized protein C9orf114 OS=Homo sapiens GN=C9orf114 PE=1
SV=3
Length = 376
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/304 (46%), Positives = 183/304 (60%), Gaps = 8/304 (2%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T+SVA+PGSI+DN QS EL T LAGQIARA IF +DE+VVFD +
Sbjct: 74 TLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDAKTVEGEFTGVG 133
Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
+ L R+LQYLE PQYLRKA F H L+F G+L PLD+PHH+R+ E + F
Sbjct: 134 KKG----QACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHHMRQDEESEF 189
Query: 182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPR-QVVPP 240
REG+ + G+ V+ G+ K V +D+ L+PG+RVTV + ++ D + +VV
Sbjct: 190 REGIVVDRPTRPGHGSFVNCGMKKEVKIDKNLEPGLRVTVRLNQQQHPDCKTYHGKVVSS 249
Query: 241 SKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHL 299
P+ ++G+YWGY VR A +S+VF ++ GYD IGTSE G V S+ LP FRH
Sbjct: 250 QDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQ--LPNFRHA 307
Query: 300 LIAFGGLAGLEESIEEDDGLKRKNAREVFHSYFNTCPHQGSRTIRTEEAIFISLQYFQEP 359
L+ FGGL GLE + D L+ +F Y NTCP QGSRTIRTEEAI ISL Q
Sbjct: 308 LVVFGGLQGLEAGADADPNLEVAEPSVLFDLYVNTCPGQGSRTIRTEEAILISLAALQPG 367
Query: 360 ISRA 363
+ +A
Sbjct: 368 LIQA 371
>sp|Q10950|YMP6_CAEEL Uncharacterized protein B0361.6 OS=Caenorhabditis elegans
GN=B0361.6 PE=4 SV=1
Length = 378
Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 166/308 (53%), Gaps = 17/308 (5%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T+S+AVPG ++N QS EL T +AGQIARA T++R+DE++++D + + ++ N +
Sbjct: 67 TISIAVPGQFLNNAQSAELRTYMAGQIARAATLYRVDEIIIYDESCRMTDEAVNAYYNGT 126
Query: 122 NR-----SDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKH 176
+ ++ N G +L ++L+YLE PQYLRK LF + L+ G+L PLDA HHL+
Sbjct: 127 WQGNLIPAETNYEGCFYLAKILEYLECPQYLRKDLFPIQKPLKNAGLLNPLDAQHHLKYD 186
Query: 177 EWA-PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQ---VLDPGVRVTVAMGTNRNLDAD 232
E FREGV LK+ + + G + ++GL K +D L P RVTV + N
Sbjct: 187 EKTLRFREGVVLKKRSKDGRGPICNIGLEKEFEIDSDAVQLPPYTRVTVEI-KNLTEQCK 245
Query: 233 SPRQVVP--PSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSD 290
R + + +E+G+YWGY VR + V + +D + G S G + + D
Sbjct: 246 LYRGSITSGATVTRETGLYWGYSVRLMTGLQKVLQ----AKKFDIVAGVSPRGKLASQMD 301
Query: 291 LTLPTFRHLLIAFGGLAGLEESIEEDDGLKRKNAREVFHSYFNTCP-HQGSRTIRTEEAI 349
+ + +L+ FGG+AG++ ++E ++ + + A + F T GSR+ R EE +
Sbjct: 302 VCILNKPKILLVFGGVAGVDAAVESEELAEWRRAEDAFDVLIRTTSLSNGSRSERVEENV 361
Query: 350 FISLQYFQ 357
L Q
Sbjct: 362 LSVLAQVQ 369
>sp|O13641|YGWG_SCHPO Uncharacterized protein C8D2.16c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pi049 PE=4 SV=1
Length = 315
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 135/271 (49%), Gaps = 26/271 (9%)
Query: 48 KRDQLNDDAPIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKS 107
K ++ P T+S+A+P S ++ +L+L T +I+R V+++ IDE+++ ++
Sbjct: 3 KESEIQSLPPTRRYTISLALPISSLNVAYNLQLKTSFVWKISRIVSLYGIDEIILLEDPE 62
Query: 108 SSDNYSRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLP-- 165
N + ++ + D + FL LL Y ETP ++RK LF ++ L++ P
Sbjct: 63 YVQNTQVHTLSSDAYLKDPTK----FLTDLLCYFETPFFMRKELFPLNPHLKYTSCFPLL 118
Query: 166 PLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVD--QVLDPGVRVTVAM 223
PL + P+REG+ + +++ GL+ +V+V VL P RVTV
Sbjct: 119 PLRNDKASTVNIEFPYREGIVTHPSPQAKNKYIINAGLSHNVIVSSPSVLAPRTRVTV-- 176
Query: 224 GTNRNLDADSPRQ-------VVPPSKPKES-GMYWGYKVRYAPNISSVFKNCSYKGGYDH 275
L A SP + +V S P+E G YWGYKVR + S + K+ YKGGYD
Sbjct: 177 ----RLKAQSPNEEGQLQGDIVSFSAPREKGGHYWGYKVRSCLS-SQLCKSSPYKGGYDF 231
Query: 276 LIGTSEHGDIVNSSDL--TLP-TFRHLLIAF 303
++ + + S +L +LP +FRH ++
Sbjct: 232 VVQINSQTSAITSKELEASLPSSFRHAVLVL 262
>sp|Q06847|Y1688_HALSA Uncharacterized protein VNG_1688C OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=VNG_1688C
PE=4 SV=2
Length = 283
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 129/312 (41%), Gaps = 57/312 (18%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T SV VP S++ + ATR G +ARA +FRID VVVF ++
Sbjct: 2 TRSVLVPSSLVREAEDKREATRKLGYVARAAAVFRIDRVVVFPDEDG------------- 48
Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPP--LDAPHHLRKHEWA 179
E + G F+ +L+Y TP YLRK F L + G+LPP L +
Sbjct: 49 ----ERQWGGGFVETVLRYAATPPYLRKEAFDTRDELAYAGVLPPLRLSSWTGSDSSGSG 104
Query: 180 PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQ----VLDPGVRVTVAMGTNRNLDADSPR 235
R+G+ + + V V+ G+ + + + + G RVT+ + + R + A
Sbjct: 105 SLRQGIVTQVGSEGRV--RVNCGMQHPISLHEPPGMAVSEGERVTIRVSSRRPVRAKLVD 162
Query: 236 QVVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPT 295
+P + +G+ + + I TS HG+ ++ + +L
Sbjct: 163 DPLPGFSVERTGL----------------GDALDRSDAGVRIATSRHGEPLSVA--SLGG 204
Query: 296 FRH------LLIAFGG--------LAGLEESIEEDDGLKRKNAREVFHSYFNTCPHQGSR 341
+R + +AFG L +++ E +A F ++ NT P QGS
Sbjct: 205 YRERIARDGVTVAFGAPERGLPPMLGVSADAVNESVTDSSADAPARFDAWLNTIPDQGSE 264
Query: 342 TIRTEEAIFISL 353
+RTEEA+ +L
Sbjct: 265 VVRTEEAVLATL 276
>sp|P20571|Y1612_HALMA Uncharacterized protein rrnAC1612 OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rrnAC1612 PE=4 SV=2
Length = 281
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 136/310 (43%), Gaps = 55/310 (17%)
Query: 62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
T SV VP S+ + ATR G +ARA ++R+D + V+ + + +
Sbjct: 2 TTSVLVPSSLAREAEDRREATRKLGYVARAAAVYRVDRLTVYPDPDGAGKW--------- 52
Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
E G F+ +L+Y TP +LRK ++ L +VG+LPPL +R +
Sbjct: 53 ------EDG--FVETVLRYAATPPHLRKEMWGKRDELEYVGVLPPL----RVRSQTGSGS 100
Query: 182 REGVTLKENAPNSVG----TLVDVGLNKHVVV----DQVLDPGVRVTVAMGTNRNLDADS 233
+L++ VG V+ G+ + + D ++ G RVTV + + R + A
Sbjct: 101 EGSGSLRQGIVTEVGADGRVRVNCGMQHPISLPVPADMDVEQGERVTVRVSSRRPVRA-- 158
Query: 234 PRQVVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTL 293
+ V P+ G+ V +++ + I +S +G+ V S+ L
Sbjct: 159 -KLVDAPTT--------GFDV-----VAADLDAALSRDDAGLTIASSRYGEPVTSTRLGQ 204
Query: 294 PTFRH-----LLIAFG----GLAG-LEESIEEDDGLKRKNAREVFHSYFNTCPHQGSRTI 343
R + +AFG GL L+ + + G + + E F + NT P+QGS +
Sbjct: 205 LAERRDAEGGMTVAFGAPERGLPSILDVAPDAVGGDQTSDEPEGFDLWLNTVPNQGSEVV 264
Query: 344 RTEEAIFISL 353
RTEEA+F SL
Sbjct: 265 RTEEALFASL 274
>sp|P53336|YG5X_YEAST Uncharacterized protein YGR283C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YGR283C PE=1 SV=1
Length = 341
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 25/217 (11%)
Query: 55 DAPIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSR 114
D V S+ +P ++IDN +LE T A QIAR +F + E++V D S+
Sbjct: 32 DIESNVVKYSICIPTTVIDNCNNLEQVTFTAYQIARTAVLFNVQEIIVLDQ-------SK 84
Query: 115 SSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSS--LRFVGMLPPLDAPHH 172
+ +RS E S L LLQY TP L F + L+ PPL+
Sbjct: 85 DKKHEKKSRSKETISDCLLLATLLQYFVTPPNLLDTTFKKKNKLYLKCASTFPPLNQLPF 144
Query: 173 LRKHEWAPFREGVTL-----KENAPNSVGTLVDVGLNKHVVV-DQVLDPGVRVTVAMGTN 226
+ ++EG+++ K + +++ LV +G N+ + + +Q + RVTV
Sbjct: 145 MNASAEQHYKEGLSIARDSSKGKSDDALTNLVYIGKNQIITLSNQNIPNTARVTV----- 199
Query: 227 RNLDADSPRQVVPPSKPKESGMYWGYKVRYAPNISSV 263
D+ R+ V G GY VR A ++ V
Sbjct: 200 -----DTERKEVVSPIDAYKGKPLGYHVRMASTLNEV 231
>sp|Q04867|YM91_YEAST Uncharacterized protein YMR310C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YMR310C PE=1 SV=1
Length = 317
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 129/302 (42%), Gaps = 47/302 (15%)
Query: 64 SVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNR 123
S+ +P +++ + ++L T Q+A+ ++F + EVV+ ++ S D
Sbjct: 21 SLCIPTTLVSDCRNLSQITHKVYQVAKFASLFNVSEVVILEDNSQVDA------------ 68
Query: 124 SDENESGAAFLVRLLQYLETPQYLRKALFS--MHSSLRFVGMLPPLDAPHHLR--KHEWA 179
+ + S A ++ LLQY TP YLR +F+ L LP L R K +
Sbjct: 69 TKKKISTAKLILALLQYFVTPPYLRNTVFNEKFRPYLTAASKLPRLSTLPFTRYQKQDHG 128
Query: 180 PFREGVTLKENAPN----SVGTL------VDVGLNKHVVVDQVLDP-GVRVTVAMGTNRN 228
+REG+T+K P +G + +++G +K + + L P RVT+ T
Sbjct: 129 RYREGLTIKMQKPTLARKKIGKVFKQTKYINIGKSKALALQSQLVPINARVTIDTIT--- 185
Query: 229 LDADSPRQVVPPSKP--KESGM--YWGYKVRYAPNISSVFKNCSYKGGYDHLIG---TSE 281
R++V P + +G+ +GY R A + + +F K GY + T+
Sbjct: 186 ------RKIVSPQEAYGDFTGLDSQYGYYTRIASSFTDLFMKGPLKEGYTQSVYVPLTTR 239
Query: 282 HGDIVNSSDL-TLPTFRHLLIAFGGLAGLEES--IEEDDGLKRKNAREVFHSYFNTCPHQ 338
I S L T T H+L+ F L + +++D + + +E F + CP
Sbjct: 240 DTSIPELSSLPTAETNPHILLVFSTWDTLARAFKLDQDQFVDCQGPQEFFDAQLP-CPVS 298
Query: 339 GS 340
S
Sbjct: 299 NS 300
>sp|Q2IK81|EFG2_ANADE Elongation factor G 2 OS=Anaeromyxobacter dehalogenans (strain
2CP-C) GN=fusA2 PE=3 SV=1
Length = 694
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 259 NISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGLAGLE-ESIEEDD 317
I+S +C +KG + ++I T H D + +L ++ +AG++ +S+ D
Sbjct: 63 TIASAATHCEWKGLHLNIIDTPGHVDFTIEVERSLRVLDGAILVLCSVAGVQSQSLTVDR 122
Query: 318 GLKRKNAREVFHSYFNTCPHQGSRTIRTEEAIFISLQY----FQEPI 360
++R N + ++ N C G+ IR ++ + LQ+ Q PI
Sbjct: 123 QMRRYNVPRL--AFVNKCDRSGANPIRVKDQLREKLQHNPVLMQLPI 167
>sp|A1Z9P3|SHRM_DROME Protein Shroom OS=Drosophila melanogaster GN=Shroom PE=1 SV=2
Length = 1576
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 18/138 (13%)
Query: 184 GVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPG-----VRVTVAMGTNRNLDADSPRQVV 238
GVT K PN++ ++ +G+ H L PG VT+ G+N NL +SP
Sbjct: 963 GVTGK--LPNNLPDVLPLGVKLHQ--QPKLQPGSPNGDANVTLRYGSNNNLTGNSPTVAP 1018
Query: 239 PPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRH 298
PP Y+G RY+ + S K S+ D+ ++S +T+PT
Sbjct: 1019 PP--------YYGGGQRYSTPVLGQGYGKSSKPVTPQQYTRSQSYDVKHTSAVTMPTMSQ 1070
Query: 299 LLIAFGGLA-GLEESIEE 315
+ A LE ++EE
Sbjct: 1071 SHVDLKQAAHDLETTLEE 1088
>sp|O88485|DC1I1_MOUSE Cytoplasmic dynein 1 intermediate chain 1 OS=Mus musculus
GN=Dync1i1 PE=1 SV=2
Length = 628
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 48 KRDQLNDDAPIEVPTVSVAVPG-SIIDNTQSLELATRLA-GQIARAVTIFRIDEVVVFDN 105
+ D N ++ EVPT SVA+ G S ++ + + +A G + I+ + E+ V N
Sbjct: 539 RLDLWNLNSDTEVPTASVAIEGASALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAVPHN 598
Query: 106 KSSSDNYSRSSAANRSNRSDENESGAAFL 134
+ ++R+ R+NR+D E GA L
Sbjct: 599 DEWT-RFARTLVEIRANRADSEEEGAVEL 626
>sp|Q29RQ3|DC1I1_BOVIN Cytoplasmic dynein 1 intermediate chain 1 OS=Bos taurus GN=DYNC1I1
PE=1 SV=1
Length = 608
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 52 LNDDAPIEVPTVSVAVPG-SIIDNTQSLELATRLA-GQIARAVTIFRIDEVVVFDNKSSS 109
LN+D EVPT SVA+ G S ++ + + +A G + I+ + E+ V N +
Sbjct: 525 LNNDT--EVPTASVAIEGASALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAVPHNDEWT 582
Query: 110 DNYSRSSAANRSNRSDENESGAAFL 134
++R+ R+NR+D E GA L
Sbjct: 583 -RFARTLVEIRANRADSEEEGAVEL 606
>sp|Q0JKK6|WOX7_ORYSJ WUSCHEL-related homeobox 7 OS=Oryza sativa subsp. japonica GN=WOX7
PE=2 SV=2
Length = 533
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 224 GTNRNLDADSPRQVVPPSKPKESGMYWGY-KVRYAPNISSVFKNCSYKGGY-DHLIGTSE 281
G +L +P+ PPS P +GM+WG APN ++ K+C++ G H G+++
Sbjct: 282 GQYMHLPVPAPQ---PPSSPGAAGMFWGLCNDVQAPN-NTGHKSCAWSAGLGQHWCGSAD 337
Query: 282 HGDIVNSSDLTLPT 295
+ SS ++ T
Sbjct: 338 QLGLGKSSAASIAT 351
>sp|Q63100|DC1I1_RAT Cytoplasmic dynein 1 intermediate chain 1 OS=Rattus norvegicus
GN=Dync1i1 PE=1 SV=1
Length = 643
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 48 KRDQLNDDAPIEVPTVSVAVPGSIIDNTQSLELATR--LAGQIARAVTIFRIDEVVVFDN 105
+ D N ++ EVPT SVA+ G+ N + G + I+ + E+ V N
Sbjct: 554 RLDLWNLNSDTEVPTASVAIEGAYALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAVPHN 613
Query: 106 KSSSDNYSRSSAANRSNRSDENESGAAFL 134
+ ++R+ R+NR+D E GA L
Sbjct: 614 DEWT-RFARTLVEIRANRADSEEEGAVEL 641
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,538,747
Number of Sequences: 539616
Number of extensions: 6157980
Number of successful extensions: 13903
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 13860
Number of HSP's gapped (non-prelim): 54
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)