Query 017050
Match_columns 378
No_of_seqs 129 out of 271
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:06:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k3r_A Conserved protein MT000 100.0 3.8E-92 1.3E-96 676.4 25.2 248 60-360 3-261 (268)
2 3dcm_X AdoMet, uncharacterized 77.6 1.8 6.2E-05 39.4 3.9 91 253-356 84-183 (192)
3 4fak_A Ribosomal RNA large sub 57.5 1.4 4.7E-05 39.2 -1.3 78 273-358 74-158 (163)
4 3l8u_A SMU.1707C, putative rRN 48.8 76 0.0026 27.9 8.7 84 254-354 73-159 (182)
5 1to0_A Hypothetical UPF0247 pr 45.2 3.8 0.00013 36.5 -0.5 73 274-358 71-154 (167)
6 3onp_A TRNA/RRNA methyltransfe 40.5 70 0.0024 29.6 7.4 52 254-311 61-124 (249)
7 1o6d_A Hypothetical UPF0247 pr 38.9 4 0.00014 36.2 -1.3 73 274-358 66-148 (163)
8 1ns5_A Hypothetical protein YB 36.7 3.6 0.00012 36.2 -2.0 77 274-358 67-149 (155)
9 3kty_A Probable methyltransfer 34.6 19 0.00064 31.2 2.3 32 71-106 14-45 (173)
10 1v2x_A TRNA (GM18) methyltrans 34.6 22 0.00075 31.5 2.8 30 71-104 26-55 (194)
11 2ha8_A TAR (HIV-1) RNA loop bi 33.0 24 0.00081 31.0 2.7 29 71-103 30-58 (184)
12 1zjr_A TRNA (guanosine-2'-O-)- 31.7 23 0.00077 32.0 2.4 31 71-105 29-59 (211)
13 3ilk_A Uncharacterized tRNA/RR 31.1 29 0.00099 32.2 3.1 32 71-106 11-42 (244)
14 3kw2_A Probable R-RNA methyltr 28.2 57 0.0019 30.4 4.6 98 246-360 136-243 (257)
15 1vhk_A Hypothetical protein YQ 27.3 27 0.00091 32.8 2.1 100 247-361 146-252 (268)
16 3ic6_A Putative methylase fami 26.5 1.1E+02 0.0036 28.2 6.0 85 253-355 92-189 (223)
17 3onp_A TRNA/RRNA methyltransfe 25.2 37 0.0012 31.6 2.7 32 71-106 8-39 (249)
18 3ilk_A Uncharacterized tRNA/RR 25.2 1.5E+02 0.005 27.4 6.8 90 249-357 58-157 (244)
19 3n4j_A RNA methyltransferase; 24.2 40 0.0014 29.1 2.5 26 72-101 9-34 (165)
20 1v2x_A TRNA (GM18) methyltrans 24.1 2.5E+02 0.0086 24.5 7.9 86 252-355 74-163 (194)
21 3l8u_A SMU.1707C, putative rRN 23.5 41 0.0014 29.7 2.5 29 71-103 21-49 (182)
22 3e5y_A TRMH family RNA methylt 22.0 46 0.0016 28.5 2.5 29 71-104 9-37 (160)
23 2i6d_A RNA methyltransferase, 22.0 47 0.0016 30.7 2.7 32 71-106 107-138 (257)
24 3ic6_A Putative methylase fami 22.0 42 0.0014 30.9 2.3 31 72-106 22-52 (223)
25 1ipa_A RRMH, RNA 2'-O-ribose m 20.7 52 0.0018 30.8 2.8 31 71-105 120-150 (274)
26 1gz0_A Hypothetical tRNA/RRNA 20.5 53 0.0018 30.3 2.8 30 72-105 110-139 (253)
No 1
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=100.00 E-value=3.8e-92 Score=676.37 Aligned_cols=248 Identities=31% Similarity=0.517 Sum_probs=226.0
Q ss_pred cceEEEEecCccccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCCCCCCccccccccccCCCCCCCcchHHHHHHHHh
Q 017050 60 VPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRLLQ 139 (378)
Q Consensus 60 ~~tvSIAIP~SIlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~~~~~~~~~~~~~~~~~~~~~~~~~~~fLa~lLq 139 (378)
++|+|||||+||++||||+|+|||+|||||||||||||||||||||+. .+++.||++|||
T Consensus 3 ~~t~SIaIP~Sil~~a~s~e~kT~~~gqIARAaaIF~VdEIvVy~d~~--------------------~~~~~~l~~iL~ 62 (268)
T 1k3r_A 3 RVDLSLFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDA--------------------DGEARFIRDILT 62 (268)
T ss_dssp SCEEEEEEETTTTTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEECSS--------------------CCCHHHHHHHHH
T ss_pred eeEEEEEechHHhccCCCHHHHHHHHHHHHHHHHhccccEEEEEeCCC--------------------CCHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999863 124789999999
Q ss_pred hhcCChhhhhhhcCCCCCccccccCCCCCCCCcCCC-CCcCCceeEEEeeccCCCCCceEEEeCCCceeeecccCC--CC
Q 017050 140 YLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRK-HEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLD--PG 216 (378)
Q Consensus 140 YleTPpYLRK~LFP~h~~Lk~aGlLPPL~~PhH~r~-~e~~~yREGvvv~~~~~~~~gs~VdiGl~k~v~i~~~l~--~g 216 (378)
||||||||||+|||+|++|||||+||||++|||++. ++|++||||||+++. ++++|||||+.+++.++ +| +|
T Consensus 63 YleTPpYLRK~lFp~~~~Lk~aGlLPpL~~phH~~~~~~~~~yREGvv~~~~---~~~~~VdiGl~~~v~~~--~p~~~g 137 (268)
T 1k3r_A 63 YMDTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKPVTGEYRQGLTVKRV---KKGTLVDIGADKLALCR--EKLTVN 137 (268)
T ss_dssp HHHSCHHHHHHHCCCCGGGGGGGGCCCCCCTTSCCSSCCTTCEEEEEEEEEC---SSSEEEESSSSCEEECS--SCCCSS
T ss_pred HhcCChhHhHhhCCCCcCcceecCcCCCCCCCCCCCCCCccceEEEEEEEec---CCceEEEeCCCceEEEe--cCCCCC
Confidence 999999999999999999999999999999999987 889999999999984 56799999999999998 88 99
Q ss_pred cEEEEEecCCCCCCCCCCceecCCCCCCCCCcccceEEEEe--CChHHHHhcCCCCCCCcEEEEeCCCCCccCCCCCC-C
Q 017050 217 VRVTVAMGTNRNLDADSPRQVVPPSKPKESGMYWGYKVRYA--PNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLT-L 293 (378)
Q Consensus 217 ~RVTV~l~~~~~~~~~~~~~vVsp~~p~~~G~YWGY~VR~a--~sLs~vf~e~p~~~gYD~~IgTS~~G~~i~~~~~~-l 293 (378)
+||||+|++.. +.+.+++|+|+ |+||||+||+| + |+++|++| |||++||||++|.++. ..+. +
T Consensus 138 ~RVTV~~~~~~---~~~~~~~V~p~-----~~YwGY~Vr~~~~~-l~~v~~~~----gyd~~I~TS~~G~~~~-~~l~~~ 203 (268)
T 1k3r_A 138 RIMSFRVVRLG---KEILIEPDEPE-----DRYWGYEVLDTRRN-LAESLKTV----GADVVVATSRNASPIT-SILDEV 203 (268)
T ss_dssp CEEEEEEEECS---SSCEEEECCCS-----SSCCCCEEEEEEEE-HHHHHHHH----CCSEEEEECTTSCBTT-TSHHHH
T ss_pred cEEEEEecCCC---ccceeEEcCCC-----CCccCeEEEEehhh-HHHHHhhc----CCCeEEEECCCCCCch-hccchh
Confidence 99999998542 34578999987 78999999999 9 99999998 8999999999999886 3221 2
Q ss_pred ----CCCCcEEEEEcCc-cchhhhhhcccccccccccccCceEEecCCCCCccccchhHHHHHHHhhcchhH
Q 017050 294 ----PTFRHLLIAFGGL-AGLEESIEEDDGLKRKNAREVFHSYFNTCPHQGSRTIRTEEAIFISLQYFQEPI 360 (378)
Q Consensus 294 ----p~~~h~LIVFGg~-~GLe~~~~~d~~l~~~~~~~~FD~~lNt~P~QGsrTIRTEEAvlItLa~L~~~~ 360 (378)
.+++|+||||||| +||+++ +||+||||||+||||||||||||+||||.|+..+
T Consensus 204 ~~~~~~~~~~liVFG~~~~Gl~~~--------------~fd~~~Nt~P~QGsrtIRtEEAv~itLa~L~~~~ 261 (268)
T 1k3r_A 204 KTRMRGAREAAILFGGPYKGLPEI--------------DADIWVNTLPGQCTETVRTEEAVLATLSVFNMLT 261 (268)
T ss_dssp HHHHTTCSEEEEECCCSSSCCCSC--------------CCSEEEBSSTTCSSSCCCHHHHHHHHHHHHHHHT
T ss_pred hhcccCCCeEEEEECCccccchhh--------------hcCeeEeccCCCCCccccHHHHHHHHHHHhhhhh
Confidence 4789999999999 999865 6999999999999999999999999999999874
No 2
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=77.56 E-value=1.8 Score=39.44 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=53.3
Q ss_pred EEEEeCChHHHHhcCCC-CCCCcEEEEeCCCCC--ccCCCCC--CC-CCCCcEEEEEcCccchhhhhhcccccccccccc
Q 017050 253 KVRYAPNISSVFKNCSY-KGGYDHLIGTSEHGD--IVNSSDL--TL-PTFRHLLIAFGGLAGLEESIEEDDGLKRKNARE 326 (378)
Q Consensus 253 ~VR~a~sLs~vf~e~p~-~~gYD~~IgTS~~G~--~i~~~~~--~l-p~~~h~LIVFGg~~GLe~~~~~d~~l~~~~~~~ 326 (378)
.+++++||.+++.+|.- .+..-++||||-+-. .++-.++ .+ ...+.++||||-=.||-.-. -+
T Consensus 84 ~a~vv~sL~eAl~~~~~~~g~~p~vvaTsAr~~~~~i~~~el~~~i~~~~~pvalvFG~~~GLtnee-----------l~ 152 (192)
T 3dcm_X 84 LVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGWGLPDEI-----------LE 152 (192)
T ss_dssp TEEEESSHHHHHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEECCTTCCCHHH-----------HT
T ss_pred cCeEECCHHHHHHHHHhhcCCccEEEEeCCCcCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCCHHH-----------HH
Confidence 47888899999998732 123448999997632 2221111 01 12457999999755553211 14
Q ss_pred cCceEEecCCCC---CccccchhHHHHHHHhhc
Q 017050 327 VFHSYFNTCPHQ---GSRTIRTEEAIFISLQYF 356 (378)
Q Consensus 327 ~FD~~lNt~P~Q---GsrTIRTEEAvlItLa~L 356 (378)
..|..+..+|.. .+-.+| -||.|.|=.|
T Consensus 153 ~cd~~l~~Ip~~~eY~~Lnl~--~AVaIiLdrl 183 (192)
T 3dcm_X 153 ISDYVLEPIRAQSDFNHLSVR--AAAAIIIDRL 183 (192)
T ss_dssp TCSEEBCCTTTTSSCCCCCHH--HHHHHHHHHH
T ss_pred hcCEEEccCCCCCCCCccCHH--HHHHHHHHHH
Confidence 577888656654 355553 4666666444
No 3
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=57.47 E-value=1.4 Score=39.20 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=50.4
Q ss_pred CcEEEEeCCCCCccCCCCCC--C-----CCCCcEEEEEcCccchhhhhhcccccccccccccCceEEecCCCCCccccch
Q 017050 273 YDHLIGTSEHGDIVNSSDLT--L-----PTFRHLLIAFGGLAGLEESIEEDDGLKRKNAREVFHSYFNTCPHQGSRTIRT 345 (378)
Q Consensus 273 YD~~IgTS~~G~~i~~~~~~--l-----p~~~h~LIVFGg~~GLe~~~~~d~~l~~~~~~~~FD~~lNt~P~QGsrTIRT 345 (378)
-|++|.-.++|..+++.++. + .+.+++.+|.||+.||.+.+.+.-+... -|.. =|.|||=.|-|=.
T Consensus 74 ~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG~~Gl~~~v~~rA~~~l-----SlS~--mTfpHqL~RliL~ 146 (163)
T 4fak_A 74 QSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYAL-----SFSK--MTFPHQMMRVVLI 146 (163)
T ss_dssp TSEEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHHHCSEEE-----ESCS--SCCCHHHHHHHHH
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCcceEEEEECCCccCHHHHHhcCceE-----EEec--CCCCHHHHHHHHH
Confidence 36889999999998875432 1 2346899999999999988874311110 0111 1779988776644
Q ss_pred hHHHHHHHhhcch
Q 017050 346 EEAIFISLQYFQE 358 (378)
Q Consensus 346 EEAvlItLa~L~~ 358 (378)
|-|.-|.++++.
T Consensus 147 -EQlYRA~tIl~g 158 (163)
T 4fak_A 147 -EQVYRAFKIMRG 158 (163)
T ss_dssp -HHHHHHHHHHHT
T ss_pred -HHHHHHHHHHcC
Confidence 456666666553
No 4
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=48.81 E-value=76 Score=27.87 Aligned_cols=84 Identities=13% Similarity=0.191 Sum_probs=45.9
Q ss_pred EEEeCChHHHHhcCCCCCCCcEEEEeCCCCCccCCCCCCCCCCCcEEEEEcCc-cchhhhhhcccccccccccccCceEE
Q 017050 254 VRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGL-AGLEESIEEDDGLKRKNAREVFHSYF 332 (378)
Q Consensus 254 VR~a~sLs~vf~e~p~~~gYD~~IgTS~~G~~i~~~~~~lp~~~h~LIVFGg~-~GLe~~~~~d~~l~~~~~~~~FD~~l 332 (378)
+....++.+.+..+ ||.++.++.....++.. ..++..+.+.||||+= .||...+.+ +.-|..+
T Consensus 73 i~~~~~l~~~l~~l----g~~i~~~~~~~~~~~~~--~~~~~~~~~alV~G~E~~GLs~~~l~----------~~~d~~v 136 (182)
T 3l8u_A 73 VHFYDSLNDFMNIC----SGKLHLITKFANKTYSD--ENYDDSEHHYFLFGREDKGLPEEFMR----------QHSEKAL 136 (182)
T ss_dssp EEEESSHHHHHHHC----CSEEEEECSSCSSBGGG--SCCCSSSCEEEEECBTTTBSCHHHHH----------HTGGGEE
T ss_pred eEEcCCHHHHHHHC----CCEEEEEEcCCCccccc--cccCCCCCEEEEECCccCCCCHHHHH----------HhCCeEE
Confidence 45566899999887 67655555433233332 2233334799999995 666543321 1335556
Q ss_pred ecCCCCC--ccccchhHHHHHHHh
Q 017050 333 NTCPHQG--SRTIRTEEAIFISLQ 354 (378)
Q Consensus 333 Nt~P~QG--srTIRTEEAvlItLa 354 (378)
.+|-.| .++.=.=-|.-|.|-
T Consensus 137 -~IPm~g~~~~SLNVsvAaaI~ly 159 (182)
T 3l8u_A 137 -RIPVNDQHVRSLNLSNTVCMIVY 159 (182)
T ss_dssp -BCCCCTTTCSCCCHHHHHHHHHH
T ss_pred -EECCCCCCCCCEeHHHHHHHHHH
Confidence 457655 344433444444443
No 5
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=45.18 E-value=3.8 Score=36.48 Aligned_cols=73 Identities=23% Similarity=0.361 Sum_probs=49.7
Q ss_pred cEEEEeCCCCCccCCCCCC-------CCCCCcEEEEEcCccchhhhhhcccccccccccccCceEEe----cCCCCCccc
Q 017050 274 DHLIGTSEHGDIVNSSDLT-------LPTFRHLLIAFGGLAGLEESIEEDDGLKRKNAREVFHSYFN----TCPHQGSRT 342 (378)
Q Consensus 274 D~~IgTS~~G~~i~~~~~~-------lp~~~h~LIVFGg~~GLe~~~~~d~~l~~~~~~~~FD~~lN----t~P~QGsrT 342 (378)
+++|.-.++|..++|.++. ..+..++.+|.||+.||.+.+.+.- |..|. |.|+|=.|-
T Consensus 71 ~~vI~LD~~Gk~~sS~~fA~~l~~~~~~G~~~i~FvIGGa~Gl~~~v~~rA-----------~~~lSlS~mTfpHqL~Rl 139 (167)
T 1to0_A 71 AHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRA-----------DEKLSFSKMTFPHQLMRL 139 (167)
T ss_dssp SEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHHC-----------SEEEESCSSCCCHHHHHH
T ss_pred CEEEEEcCCCCcCCHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHhh-----------CcEEEccCCCCcHHHHHH
Confidence 6788888999998875432 1233689999999999998876421 12222 789987776
Q ss_pred cchhHHHHHHHhhcch
Q 017050 343 IRTEEAIFISLQYFQE 358 (378)
Q Consensus 343 IRTEEAvlItLa~L~~ 358 (378)
|=+ |-|.=|.++++.
T Consensus 140 iL~-EQiYRA~tIl~g 154 (167)
T 1to0_A 140 ILV-EQIYRAFRINRG 154 (167)
T ss_dssp HHH-HHHHHHHHHHTS
T ss_pred HHH-HHHHHHHHHHCC
Confidence 633 456666666653
No 6
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=40.52 E-value=70 Score=29.64 Aligned_cols=52 Identities=25% Similarity=0.432 Sum_probs=34.4
Q ss_pred EEEeCChHHHHhcCCCCCCCcEEEEeCCCCCccCCCCCCC-----------CCCCcEEEEEcCc-cchhh
Q 017050 254 VRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTL-----------PTFRHLLIAFGGL-AGLEE 311 (378)
Q Consensus 254 VR~a~sLs~vf~e~p~~~gYD~~IgTS~~G~~i~~~~~~l-----------p~~~h~LIVFGg~-~GLe~ 311 (378)
+++..+|.+.+..| .+++||+.++..+....... ...+.+.||||.= .||..
T Consensus 61 ~~~~~~l~eal~~~------~~v~att~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~aLVfG~E~~GLs~ 124 (249)
T 3onp_A 61 AGLFPTVAEAIRDC------DYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLEN 124 (249)
T ss_dssp CEEESSHHHHHTTC------SEEEEEESSCCCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCH
T ss_pred EEEeCCHHHHHHhC------CeEEEEcCCCCCCCcccCCHHHHHHHHHHhhccCCCEEEEECCCcCCCCH
Confidence 56677899999876 47999988766543321110 0124799999994 66654
No 7
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=38.91 E-value=4 Score=36.22 Aligned_cols=73 Identities=26% Similarity=0.388 Sum_probs=49.8
Q ss_pred cEEEEeCCCCCccCCCCCC--CC----CCCcEEEEEcCccchhhhhhcccccccccccccCceEEe----cCCCCCcccc
Q 017050 274 DHLIGTSEHGDIVNSSDLT--LP----TFRHLLIAFGGLAGLEESIEEDDGLKRKNAREVFHSYFN----TCPHQGSRTI 343 (378)
Q Consensus 274 D~~IgTS~~G~~i~~~~~~--lp----~~~h~LIVFGg~~GLe~~~~~d~~l~~~~~~~~FD~~lN----t~P~QGsrTI 343 (378)
+++|.-.++|+.+++.++. +. ..+++.+|.||+.||.+.+.+.- |..|. |.|+|=.|-|
T Consensus 66 ~~vI~LD~~Gk~~sS~~fA~~l~~~~~~G~~i~FvIGGa~Gl~~~v~~rA-----------d~~lSlS~mTfpHqL~Rli 134 (163)
T 1o6d_A 66 SFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEIFAKA-----------HRVFSLSKMTFTHGMTVLI 134 (163)
T ss_dssp CEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGGGC-----------SEEEECCSSCCCHHHHHHH
T ss_pred CEEEEEcCCCCcCCHHHHHHHHHHHHhcCCeEEEEEECCCCCCHHHHHhh-----------CceEEccCCCCcHHHHHHH
Confidence 6688888999998875432 11 12689999999999998877421 22222 7899887766
Q ss_pred chhHHHHHHHhhcch
Q 017050 344 RTEEAIFISLQYFQE 358 (378)
Q Consensus 344 RTEEAvlItLa~L~~ 358 (378)
=+ |-|.=|.++++.
T Consensus 135 L~-EQiYRA~tIl~g 148 (163)
T 1o6d_A 135 VL-EQIFRAFKIIHG 148 (163)
T ss_dssp HH-HHHHHHHHHHTC
T ss_pred HH-HHHHHHHHHHCC
Confidence 33 466667776663
No 8
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=36.75 E-value=3.6 Score=36.15 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=48.1
Q ss_pred cEEEEeCCCCCccCCCCCC--CC----CCCcEEEEEcCccchhhhhhcccccccccccccCceEEecCCCCCccccchhH
Q 017050 274 DHLIGTSEHGDIVNSSDLT--LP----TFRHLLIAFGGLAGLEESIEEDDGLKRKNAREVFHSYFNTCPHQGSRTIRTEE 347 (378)
Q Consensus 274 D~~IgTS~~G~~i~~~~~~--lp----~~~h~LIVFGg~~GLe~~~~~d~~l~~~~~~~~FD~~lNt~P~QGsrTIRTEE 347 (378)
+.+|.-.++|..++|.++. +. ...++.+|.||+.||.+.+.+.-++.. -|.. =|.|||=.|-|=+ |
T Consensus 67 ~~vi~Ld~~Gk~~sS~~fA~~l~~~~~~g~~i~FvIGG~~Gl~~~v~~rA~~~l-----SlS~--mT~pHql~RliL~-E 138 (155)
T 1ns5_A 67 NRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSW-----SLSA--LTLPHPLVRVLVA-E 138 (155)
T ss_dssp SEEEEEEEEEECCCHHHHHHHHHHHHHHCSCEEEEECBTTBCCHHHHHHCSEEE-----CCCS--SCCCHHHHHHHHH-H
T ss_pred CcEEEEcCCCCcCCHHHHHHHHHHHHhcCCeEEEEEECCCCCCHHHHHhhCceE-----EccC--CCCcHHHHHHHHH-H
Confidence 3588888999998875432 11 126899999999999988774221110 0111 1779987766633 4
Q ss_pred HHHHHHhhcch
Q 017050 348 AIFISLQYFQE 358 (378)
Q Consensus 348 AvlItLa~L~~ 358 (378)
-|.=|.++++.
T Consensus 139 QiYRA~~Il~g 149 (155)
T 1ns5_A 139 SLYRAWSITTN 149 (155)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCc
Confidence 56666665553
No 9
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=34.64 E-value=19 Score=31.25 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=24.7
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCC
Q 017050 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (378)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~ 106 (378)
+|++.+++. =+|-|+|+|.-|+++.|++-...
T Consensus 14 vL~~~~dp~----N~Gai~Rta~a~G~~~l~lv~~~ 45 (173)
T 3kty_A 14 IMTQPSHPG----NVGSAARAIKTMGFGELVLVAPR 45 (173)
T ss_dssp EEESCCCHH----HHHHHHHHHHHTTCCCEEEESCS
T ss_pred EEeCCCCCC----cHHHHHHHHHHcCCCEEEEeCCC
Confidence 455666653 58999999999999999987543
No 10
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=34.58 E-value=22 Score=31.55 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=24.6
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEc
Q 017050 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFD 104 (378)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVyd 104 (378)
+|++.+++. =+|-|+|+|..|+|+.|++-.
T Consensus 26 vLd~~~dp~----NlGaI~Rta~a~G~~~v~l~~ 55 (194)
T 1v2x_A 26 LLENVHKPH----NLSAILRTCDAVGVLEAHAVN 55 (194)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTBSEEEEES
T ss_pred EEeCCCCcC----hHHHHHHHHHHhCCCEEEEeC
Confidence 456777754 589999999999999998863
No 11
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=33.00 E-value=24 Score=31.03 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=23.8
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEE
Q 017050 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVF 103 (378)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVy 103 (378)
+|++.+++. =+|-|+|+|..|+++.|+|-
T Consensus 30 vLd~i~dp~----NlGaI~Rta~a~G~~~vil~ 58 (184)
T 2ha8_A 30 VASLIDKPT----NLGGLCRTCEVFGASVLVVG 58 (184)
T ss_dssp ECTTCCCHH----HHHHHHHHHHHTTCSEEEES
T ss_pred EEcCCCCCC----cHHHHHHHHHHhCCCEEEEC
Confidence 467777754 58999999999999999873
No 12
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=31.73 E-value=23 Score=31.97 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=25.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcC
Q 017050 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (378)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd 105 (378)
+|++.+++. =+|-|+|+|..|+|+.|++-..
T Consensus 29 vLd~i~dp~----NlGaI~Rta~a~G~~~v~lv~~ 59 (211)
T 1zjr_A 29 FADNVKNEH----NFSAIVRTCDAVGVLYLYYYHA 59 (211)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTEEEEEEECS
T ss_pred EEECCCCcC----cHHHHHHHHHHhCCCEEEEeCC
Confidence 467777764 5899999999999999988744
No 13
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=31.07 E-value=29 Score=32.25 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=24.3
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCC
Q 017050 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (378)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~ 106 (378)
+|.+.+++. =+|-|||+|.-|+++.|++-+..
T Consensus 11 VL~~~~dP~----NiGai~Rta~a~G~~~l~lv~p~ 42 (244)
T 3ilk_A 11 VLIETSHSG----NIGSAARAMKTMGLTQLCLVSPK 42 (244)
T ss_dssp EEESCCSHH----HHHHHHHHHHHHTCCEEEEESCS
T ss_pred EEECCCCcC----hHHHHHHHHHHhCCCEEEEECCC
Confidence 345555543 47999999999999999988654
No 14
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=28.23 E-value=57 Score=30.40 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=53.9
Q ss_pred CCcccceEEEEeCChHHHHhcCCCCCCCcEE-EEe-CCC------CC-ccCCCCCCCCCCCcEEEEEcCccchhhhhhcc
Q 017050 246 SGMYWGYKVRYAPNISSVFKNCSYKGGYDHL-IGT-SEH------GD-IVNSSDLTLPTFRHLLIAFGGLAGLEESIEED 316 (378)
Q Consensus 246 ~G~YWGY~VR~a~sLs~vf~e~p~~~gYD~~-IgT-S~~------G~-~i~~~~~~lp~~~h~LIVFGg~~GLe~~~~~d 316 (378)
.|-.|=-.|....+|.+++...++ +|.. |.- .+. +. .+... + .+..+.++|++|-=-|+.+ +
T Consensus 136 s~R~~~P~v~~~~~~~~~l~~~~~---~~~~li~~~~e~~~~~~~~~~~l~~~-~-~~~~~~v~l~IGPEGGfs~----~ 206 (257)
T 3kw2_A 136 SLKASFPVIRVNIPIQTVIADTPK---AAVRLIAYVDEAVRAEITQGRGYPSD-F-YHVGQDVLILIGPEGDFSP----S 206 (257)
T ss_dssp TTCSBCCEEEEEEEHHHHHHHSCT---TSEEEEECCCTTCC-----CCCCGGG-T-CCTTSCEEEEECCTTCCCH----H
T ss_pred cCCCcCCEecCcCCHHHHHhhccc---cCCEEEEEcccccccccccccchhHh-h-ccCCCcEEEEECCCCCCCH----H
Confidence 455677788888889999886433 3433 332 222 11 11110 1 1224578888875333321 1
Q ss_pred cccccccccccCc-eEEecCCCCCccccchhHHHHHHHhhcchhH
Q 017050 317 DGLKRKNAREVFH-SYFNTCPHQGSRTIRTEEAIFISLQYFQEPI 360 (378)
Q Consensus 317 ~~l~~~~~~~~FD-~~lNt~P~QGsrTIRTEEAvlItLa~L~~~~ 360 (378)
| ...+-+ .+. .+ .-|.|-.|||=|.+.+||.++-..
T Consensus 207 E------i~~~~~~Gf~-~v-sLG~rILRtETA~i~als~~~~~~ 243 (257)
T 3kw2_A 207 E------VESALLAGFA-PV-SLGESRLRTETAGLVACQWIHTLQ 243 (257)
T ss_dssp H------HHHHHHHTCE-EE-CCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHCCCE-EE-cCCCCcchHHHHHHHHHHHHHHHh
Confidence 0 000000 111 11 468899999999999999998544
No 15
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=27.30 E-value=27 Score=32.80 Aligned_cols=100 Identities=24% Similarity=0.286 Sum_probs=52.5
Q ss_pred CcccceEEEEeCChHHHHhcCCCCCCCcEEEEeCCCCCccCCCC------CCCCCCCcEEEEEcCccchhhh-hhccccc
Q 017050 247 GMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSD------LTLPTFRHLLIAFGGLAGLEES-IEEDDGL 319 (378)
Q Consensus 247 G~YWGY~VR~a~sLs~vf~e~p~~~gYD~~IgTS~~G~~i~~~~------~~lp~~~h~LIVFGg~~GLe~~-~~~d~~l 319 (378)
|-.|=-.|....+|.+++... .++|+.+...+......... ..+...+.++|++|-=-|+.+. ++ .+
T Consensus 146 ~R~~iP~v~~~~~~~~~l~~~---~~~~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPEGGfs~~Ei~---~~ 219 (268)
T 1vhk_A 146 YRNEVPRVMDVHSFQQLLQRM---QDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVE---RL 219 (268)
T ss_dssp TCSSCCEECCCBCHHHHHHHG---GGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHH---HH
T ss_pred CCCCCcEEecCCCHHHHHhhC---ccCCeEEEEecCcccccccccccccchhccCCCcEEEEEcCCCCCCHHHHH---HH
Confidence 445666777777899988754 34565554443321100000 1122223688888643333210 00 00
Q ss_pred ccccccccCceEEecCCCCCccccchhHHHHHHHhhcchhHH
Q 017050 320 KRKNAREVFHSYFNTCPHQGSRTIRTEEAIFISLQYFQEPIS 361 (378)
Q Consensus 320 ~~~~~~~~FD~~lNt~P~QGsrTIRTEEAvlItLa~L~~~~~ 361 (378)
... .+. .+ .-|.|-.|||=|.+.+||.++-.+.
T Consensus 220 ~~~-------G~~-~v-sLG~rILRtETA~i~als~l~~~~~ 252 (268)
T 1vhk_A 220 TEQ-------DGV-TC-GLGPRILRTETAPLYALSAISYQTE 252 (268)
T ss_dssp HHT-------TCE-EE-CCCSSCCCTTTHHHHHHHHHHHHHH
T ss_pred HHC-------CCE-Ee-cCCCCeeehHHHHHHHHHHHHHHhh
Confidence 000 011 11 4688999999999999999986654
No 16
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=26.47 E-value=1.1e+02 Score=28.20 Aligned_cols=85 Identities=8% Similarity=0.064 Sum_probs=48.1
Q ss_pred EEEEeCChHHHHhcCCCCCCCcEEEEeCCCCCccCCCC---------C-CC-CCCCcEEEEEcCc-cchhhhhhcccccc
Q 017050 253 KVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSD---------L-TL-PTFRHLLIAFGGL-AGLEESIEEDDGLK 320 (378)
Q Consensus 253 ~VR~a~sLs~vf~e~p~~~gYD~~IgTS~~G~~i~~~~---------~-~l-p~~~h~LIVFGg~-~GLe~~~~~d~~l~ 320 (378)
.+++..+|.+.+.+| .++|||+.++....... + +. +..+.++||||.= .||-..+.
T Consensus 92 ~~~v~~~l~eal~~~------~~vvatt~~~~~~~~~~~~p~e~a~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~------ 159 (223)
T 3ic6_A 92 NAEIVATLDEALADT------TIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEV------ 159 (223)
T ss_dssp TCEEESCHHHHHTTE------EEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHH------
T ss_pred eEEEeCCHHHHHHhC------CeEEEEeccCCcccccccCHHHHHHHHHHhhcccCCEEEEECCCCCCCCHHHH------
Confidence 345567899998865 57999998876532110 0 11 1126899999994 67755443
Q ss_pred cccccccCceEEecCCCCC-ccccchhHHHHHHHhh
Q 017050 321 RKNAREVFHSYFNTCPHQG-SRTIRTEEAIFISLQY 355 (378)
Q Consensus 321 ~~~~~~~FD~~lNt~P~QG-srTIRTEEAvlItLa~ 355 (378)
+.-|..+ .+|-.| .++.=.=-|+-|.|--
T Consensus 160 -----~~~d~~v-~IPm~~~~~SLNva~A~aI~lye 189 (223)
T 3ic6_A 160 -----RACNRLM-TINGNPDYFSLNLAQAVQVVCYE 189 (223)
T ss_dssp -----HTCSEEE-CCCCCTTCCCCCHHHHHHHHHHH
T ss_pred -----HhCceEE-EecCCCCCCeeEHHHHHHHHHHH
Confidence 2345666 456443 3344334455555543
No 17
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=25.24 E-value=37 Score=31.57 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=25.5
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCC
Q 017050 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (378)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~ 106 (378)
||.+.+++. =+|-|||+|.-|+++.+++-+..
T Consensus 8 VL~~~~dP~----NiGai~Rta~a~G~~~l~Lv~p~ 39 (249)
T 3onp_A 8 ILVRPQMGE----NIGAAARAMLNFGLGRLRIVDPR 39 (249)
T ss_dssp EEESCCCHH----HHHHHHHHHHHTTCCCEEEESCT
T ss_pred EEeCCCCCC----hHHHHHHHHHHcCCCEEEEeCCC
Confidence 455666654 48999999999999999998764
No 18
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=25.23 E-value=1.5e+02 Score=27.44 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=51.6
Q ss_pred ccceEEEEeCChHHHHhcCCCCCCCcEEEEeCCCCCccCCCCCC--------CCCCCcEEEEEcCc-cchhhhhhccccc
Q 017050 249 YWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLT--------LPTFRHLLIAFGGL-AGLEESIEEDDGL 319 (378)
Q Consensus 249 YWGY~VR~a~sLs~vf~e~p~~~gYD~~IgTS~~G~~i~~~~~~--------lp~~~h~LIVFGg~-~GLe~~~~~d~~l 319 (378)
||- .+++.++|.+.+.+| .++|||+.++..+...... ....+.++||||.= .||...+.
T Consensus 58 ~l~-~~~~~~~l~eal~~~------~~vvatt~~~~~~~~~~~~p~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l----- 125 (244)
T 3ilk_A 58 IVK-NARVVDSFDEAVDDC------SLVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEEL----- 125 (244)
T ss_dssp HHH-HCEEESSHHHHTTTC------SEEEEECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHH-----
T ss_pred eec-eeEEeCCHHHHHHhC------CeEEEEccCCCCCCcccCCHHHHHHHHhhcCCCEEEEECCCCCCCCHHHH-----
Confidence 565 345677899999876 3799999876654321100 00135799999994 66654332
Q ss_pred ccccccccCceEEecCCCCC-ccccchhHHHHHHHhhcc
Q 017050 320 KRKNAREVFHSYFNTCPHQG-SRTIRTEEAIFISLQYFQ 357 (378)
Q Consensus 320 ~~~~~~~~FD~~lNt~P~QG-srTIRTEEAvlItLa~L~ 357 (378)
+.-|..+ ++|-.| ..+.=.==|+.|.|--+.
T Consensus 126 ------~~~d~~v-~IP~~~~~~SLNva~A~aI~lyE~~ 157 (244)
T 3ilk_A 126 ------LKCHYHL-NIPANPDYSSLNLAMAVQLVSYELR 157 (244)
T ss_dssp ------HTCSEEE-CCCCCTTSCCCCHHHHHHHHHHHHH
T ss_pred ------HhCCeEE-EecCCCCCCeeeHHHHHHHHHHHHH
Confidence 2345556 456433 233333456666555444
No 19
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=24.17 E-value=40 Score=29.10 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=15.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccEEE
Q 017050 72 IDNTQSLELATRLAGQIARAVTIFRIDEVV 101 (378)
Q Consensus 72 lsnaqslelkT~~agqIARAaaIF~VdEIV 101 (378)
|++-+++. =+|-|+|+|..|+++-|+
T Consensus 9 L~~~~dp~----NlGaI~Rta~a~G~~~vi 34 (165)
T 3n4j_A 9 LFEPEIPP----NTGNIIRLCANTGCQLHL 34 (165)
T ss_dssp EESCCCHH----HHHHHHHHHHHHTCEEEE
T ss_pred EeCCCCCC----cHHHHHHHHHHcCCeEEE
Confidence 44555543 367778888888884333
No 20
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=24.08 E-value=2.5e+02 Score=24.52 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=48.8
Q ss_pred eEEEEeCChHHHHhcCCCCCCCcEEEEeCCC-CC-ccCCCCCCCCCCCcEEEEEcCc-cchhhhhhcccccccccccccC
Q 017050 252 YKVRYAPNISSVFKNCSYKGGYDHLIGTSEH-GD-IVNSSDLTLPTFRHLLIAFGGL-AGLEESIEEDDGLKRKNAREVF 328 (378)
Q Consensus 252 Y~VR~a~sLs~vf~e~p~~~gYD~~IgTS~~-G~-~i~~~~~~lp~~~h~LIVFGg~-~GLe~~~~~d~~l~~~~~~~~F 328 (378)
-.++...++.+.+..+.. .|| .+++|+.+ |. ++.. ... .+.++||||+= .||...+. +.-
T Consensus 74 l~~~~~~~l~~~l~~l~~-~g~-~i~~~~~~~~~~~~~~--~~~--~~~~alv~G~E~~Gls~~~l-----------~~~ 136 (194)
T 1v2x_A 74 VYLRVHPDLHEAFRFLKE-RGF-TVYATALREDARDFRE--VDY--TKPTAVLFGAEKWGVSEEAL-----------ALA 136 (194)
T ss_dssp SEEEEESSHHHHHHHHHH-TTC-EEEEECCCTTSEEGGG--SCT--TSSEEEEECBTTTBSCHHHH-----------HHS
T ss_pred eeeEecCCHHHHHHHHHH-CCC-EEEEEecCCCCccHhH--ccc--CCCeEEEECCCCCCCCHHHH-----------HhC
Confidence 457677889999887643 255 47888743 33 2322 122 34799999995 67754443 234
Q ss_pred ceEEecCCCCC-ccccchhHHHHHHHhh
Q 017050 329 HSYFNTCPHQG-SRTIRTEEAIFISLQY 355 (378)
Q Consensus 329 D~~lNt~P~QG-srTIRTEEAvlItLa~ 355 (378)
|..+. +|-.| .++.=.==|+-|.|--
T Consensus 137 d~~v~-IPm~g~~~SLNvs~AaaI~lye 163 (194)
T 1v2x_A 137 DGAIK-IPMLGMVQSLNVSVAAAVILFE 163 (194)
T ss_dssp SEEEE-CCCCSSCSCCCHHHHHHHHHHH
T ss_pred CeEEE-ECCCCCCCceeHHHHHHHHHHH
Confidence 55553 35433 3333334455555543
No 21
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=23.47 E-value=41 Score=29.66 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=22.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEE
Q 017050 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVF 103 (378)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVy 103 (378)
+|++-+++. =+|-|+|+|..|+++-|||=
T Consensus 21 vLd~v~dP~----NlGaI~Rta~afG~~~viv~ 49 (182)
T 3l8u_A 21 VLFQPQIPA----NTGNIARTCAATNTSLHIIR 49 (182)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTCEEEEES
T ss_pred EEeCCCCcC----cHHHHHHHHHHcCCcEEEEC
Confidence 456777764 58999999999999655553
No 22
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=22.04 E-value=46 Score=28.46 Aligned_cols=29 Identities=7% Similarity=0.124 Sum_probs=18.3
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEc
Q 017050 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFD 104 (378)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVyd 104 (378)
+|++-+++. =+|-|+|+|..|+++ .||..
T Consensus 9 vLd~i~dp~----NlGaI~Rta~a~G~~-~viv~ 37 (160)
T 3e5y_A 9 VLVEPEIPP----NTGNVIRLCANTGAR-LHLIE 37 (160)
T ss_dssp EEESCCCHH----HHHHHHHHHHHHTCE-EEEES
T ss_pred EEeCCCCCC----cHHHHHHHHHHcCCc-EEEEC
Confidence 345555543 467888888888884 44443
No 23
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=22.01 E-value=47 Score=30.74 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=25.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCC
Q 017050 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (378)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~ 106 (378)
+|++.+++ .=+|-|+|+|.-|+|+.|++-...
T Consensus 107 vLd~v~dp----~NlGaI~Rta~a~G~~~vil~~~~ 138 (257)
T 2i6d_A 107 LLDGVQDP----GNVGTILRTADWFGIRHVWLGTGS 138 (257)
T ss_dssp EEESCCCH----HHHHHHHHHHHHHTCCEEEECTTC
T ss_pred EEECCCCc----chHHHHHHHHHHhCCCEEEEcCCC
Confidence 35667775 458999999999999999886543
No 24
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=21.98 E-value=42 Score=30.95 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=24.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCC
Q 017050 72 IDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNK 106 (378)
Q Consensus 72 lsnaqslelkT~~agqIARAaaIF~VdEIVVydd~ 106 (378)
|.+-+++. =+|-|+|+|.-|+++.|++-...
T Consensus 22 Ld~~~dP~----NiGaI~Rta~afG~~~l~Lv~p~ 52 (223)
T 3ic6_A 22 LTRTSHPA----NIGSAARAMKTMGLHRLTIVTPN 52 (223)
T ss_dssp EESCCCHH----HHHHHHHHHHHTTCCCEEEESCC
T ss_pred EeCCCCCC----hHHHHHHHHHHcCCCEEEEeCCC
Confidence 45556653 58999999999999999997654
No 25
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=20.71 E-value=52 Score=30.85 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=24.9
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcC
Q 017050 71 IIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (378)
Q Consensus 71 IlsnaqslelkT~~agqIARAaaIF~VdEIVVydd 105 (378)
+|++.+++ .=+|-|+|+|.-|+|+.|++-..
T Consensus 120 vLd~i~dp----~NlGaI~Rta~a~G~~~vil~~~ 150 (274)
T 1ipa_A 120 VAVGLEKP----GNLGAVLRSADAAGAEAVLVAGG 150 (274)
T ss_dssp EEESCCCH----HHHHHHHHHHHHHTCSEEEEESC
T ss_pred EEeCCCCc----chHHHHHHHHHhhccCEEEEeCC
Confidence 34566665 35899999999999999998755
No 26
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=20.54 E-value=53 Score=30.32 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=23.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcC
Q 017050 72 IDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN 105 (378)
Q Consensus 72 lsnaqslelkT~~agqIARAaaIF~VdEIVVydd 105 (378)
|++.+++ .=+|-|+|+|.-|+|+.||+-..
T Consensus 110 Ld~v~dp----~NlGaI~Rta~a~G~~~vil~~~ 139 (253)
T 1gz0_A 110 LDGVTDP----HNLGACLRSADAAGVHAVIVPKD 139 (253)
T ss_dssp EESCCCH----HHHHHHHHHHHHHTCSEEEEESS
T ss_pred EeCCCCc----CcHHHHHHHHHHhCCCEEEEeCC
Confidence 4566665 35899999999999999988543
Done!