Query 017051
Match_columns 378
No_of_seqs 320 out of 2745
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:10:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02533 probable purple acid 100.0 1.1E-70 2.4E-75 529.4 41.3 364 1-365 1-371 (427)
2 KOG1378 Purple acid phosphatas 100.0 1.2E-64 2.6E-69 471.0 30.9 330 38-370 40-397 (452)
3 cd00839 MPP_PAPs purple acid p 100.0 1.3E-39 2.8E-44 302.8 23.9 225 134-359 2-244 (294)
4 cd07395 MPP_CSTP1 Homo sapiens 100.0 3.8E-30 8.1E-35 235.2 22.2 220 134-376 2-254 (262)
5 PTZ00422 glideosome-associated 100.0 3E-30 6.5E-35 241.0 21.0 223 134-375 24-307 (394)
6 cd07378 MPP_ACP5 Homo sapiens 100.0 2E-30 4.3E-35 239.0 19.1 203 137-358 1-237 (277)
7 cd07396 MPP_Nbla03831 Homo sap 99.9 3.1E-25 6.7E-30 202.9 19.6 209 137-373 1-260 (267)
8 cd07402 MPP_GpdQ Enterobacter 99.9 7.9E-25 1.7E-29 197.5 19.5 209 138-372 1-235 (240)
9 PF09423 PhoD: PhoD-like phosp 99.9 1.4E-23 3.1E-28 206.0 25.1 232 96-332 58-381 (453)
10 KOG2679 Purple (tartrate-resis 99.9 5.6E-24 1.2E-28 183.8 14.5 208 128-354 34-275 (336)
11 cd07399 MPP_YvnB Bacillus subt 99.9 2E-23 4.4E-28 184.4 17.4 188 137-377 1-204 (214)
12 PRK11148 cyclic 3',5'-adenosin 99.9 4.5E-23 9.9E-28 189.5 20.1 220 128-375 5-251 (275)
13 cd07401 MPP_TMEM62_N Homo sapi 99.9 1.1E-22 2.3E-27 184.6 18.6 185 139-334 2-216 (256)
14 COG3540 PhoD Phosphodiesterase 99.9 2E-21 4.3E-26 180.7 18.6 279 42-329 36-419 (522)
15 cd00842 MPP_ASMase acid sphing 99.9 2.7E-21 5.7E-26 179.9 17.5 217 141-368 42-296 (296)
16 cd08163 MPP_Cdc1 Saccharomyces 99.8 2.8E-18 6.2E-23 154.9 18.0 168 153-332 35-232 (257)
17 PF00149 Metallophos: Calcineu 99.8 4.4E-19 9.5E-24 150.7 9.6 188 137-328 1-200 (200)
18 cd07393 MPP_DR1119 Deinococcus 99.8 2.1E-17 4.6E-22 147.9 16.3 190 140-352 2-226 (232)
19 TIGR03767 P_acnes_RR metalloph 99.8 4.7E-17 1E-21 154.7 18.3 128 235-373 290-430 (496)
20 cd07383 MPP_Dcr2 Saccharomyces 99.8 2.8E-17 6E-22 143.9 15.5 161 136-352 2-192 (199)
21 cd07392 MPP_PAE1087 Pyrobaculu 99.7 8E-17 1.7E-21 139.5 15.8 167 139-329 1-174 (188)
22 cd07385 MPP_YkuE_C Bacillus su 99.7 5.3E-17 1.1E-21 144.7 15.1 204 136-372 1-223 (223)
23 PRK11340 phosphodiesterase Yae 99.7 3.2E-16 7E-21 143.5 18.7 204 133-372 46-270 (271)
24 TIGR03729 acc_ester putative p 99.7 1.9E-16 4.1E-21 142.6 14.7 176 138-329 1-222 (239)
25 cd07388 MPP_Tt1561 Thermus the 99.7 1.4E-15 3.1E-20 133.8 18.6 172 136-326 4-189 (224)
26 COG1409 Icc Predicted phosphoh 99.7 2.2E-15 4.8E-20 140.0 16.5 179 137-328 1-193 (301)
27 cd07400 MPP_YydB Bacillus subt 99.7 1.7E-15 3.6E-20 125.6 13.1 132 139-351 1-144 (144)
28 TIGR03768 RPA4764 metallophosp 99.6 1.4E-14 3.1E-19 136.5 18.9 128 236-372 292-448 (492)
29 KOG1432 Predicted DNA repair e 99.6 4.8E-14 1E-18 126.7 19.0 231 134-374 51-350 (379)
30 cd07404 MPP_MS158 Microscilla 99.6 7E-15 1.5E-19 124.9 11.9 143 139-329 1-150 (166)
31 cd00840 MPP_Mre11_N Mre11 nucl 99.6 1.5E-14 3.2E-19 128.9 13.2 186 138-331 1-204 (223)
32 COG1408 Predicted phosphohydro 99.5 3.2E-13 6.8E-18 123.3 12.1 212 134-374 42-283 (284)
33 PF12850 Metallophos_2: Calcin 99.5 4.4E-13 9.6E-18 112.3 10.9 154 137-374 1-155 (156)
34 cd00838 MPP_superfamily metall 99.4 1.3E-12 2.8E-17 105.3 12.1 116 140-332 1-119 (131)
35 cd07379 MPP_239FB Homo sapiens 99.4 1.6E-12 3.5E-17 106.4 12.2 117 138-329 1-117 (135)
36 cd07397 MPP_DevT Myxococcus xa 99.4 5.3E-12 1.2E-16 111.5 16.1 198 137-350 1-232 (238)
37 COG2129 Predicted phosphoester 99.4 6.6E-12 1.4E-16 107.7 14.4 204 135-375 2-217 (226)
38 cd00841 MPP_YfcE Escherichia c 99.3 1.3E-11 2.9E-16 103.4 10.3 147 138-374 1-148 (155)
39 cd08166 MPP_Cdc1_like_1 unchar 99.3 1.8E-11 3.9E-16 104.7 10.5 109 158-332 38-151 (195)
40 PF14582 Metallophos_3: Metall 99.3 3.5E-11 7.6E-16 102.9 12.1 192 137-351 6-234 (255)
41 TIGR00040 yfcE phosphoesterase 99.3 5.5E-11 1.2E-15 100.0 13.0 152 137-376 1-154 (158)
42 cd07394 MPP_Vps29 Homo sapiens 99.3 2E-10 4.3E-15 98.3 16.2 153 138-375 1-157 (178)
43 PRK05340 UDP-2,3-diacylglucosa 99.3 6.8E-11 1.5E-15 106.6 12.3 192 137-352 1-219 (241)
44 KOG3770 Acid sphingomyelinase 99.2 2.5E-10 5.5E-15 110.5 15.6 210 152-373 198-443 (577)
45 cd07384 MPP_Cdc1_like Saccharo 99.2 1E-10 2.2E-15 99.5 11.0 50 159-208 42-100 (171)
46 TIGR01854 lipid_A_lpxH UDP-2,3 99.2 1.2E-09 2.6E-14 97.8 15.4 69 140-208 2-81 (231)
47 cd08165 MPP_MPPE1 human MPPE1 99.1 4.7E-10 1E-14 93.9 11.6 51 158-208 34-89 (156)
48 cd07389 MPP_PhoD Bacillus subt 99.1 2.1E-09 4.4E-14 96.1 15.3 156 138-331 1-207 (228)
49 cd07403 MPP_TTHA0053 Thermus t 99.1 8.5E-10 1.9E-14 89.3 10.9 104 140-331 1-106 (129)
50 PRK09453 phosphodiesterase; Pr 99.1 2E-09 4.4E-14 92.7 13.5 69 137-207 1-75 (182)
51 TIGR00583 mre11 DNA repair pro 99.0 7.2E-09 1.6E-13 99.2 16.4 74 135-208 2-123 (405)
52 cd00845 MPP_UshA_N_like Escher 99.0 5E-09 1.1E-13 95.1 13.1 196 137-357 1-229 (252)
53 cd07410 MPP_CpdB_N Escherichia 99.0 1.9E-08 4.2E-13 92.6 15.2 204 137-361 1-256 (277)
54 cd07406 MPP_CG11883_N Drosophi 99.0 1.8E-08 3.9E-13 91.6 14.7 197 137-361 1-232 (257)
55 cd07398 MPP_YbbF-LpxH Escheric 98.9 1E-08 2.3E-13 90.8 10.5 191 140-351 1-216 (217)
56 COG1768 Predicted phosphohydro 98.9 6.4E-08 1.4E-12 79.6 13.5 165 162-351 43-219 (230)
57 cd08164 MPP_Ted1 Saccharomyces 98.9 1.2E-08 2.6E-13 87.3 8.8 57 153-209 34-112 (193)
58 PHA02546 47 endonuclease subun 98.8 2.6E-07 5.6E-12 87.5 18.1 72 137-208 1-89 (340)
59 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.8 1.9E-07 4E-12 84.6 15.6 178 139-334 1-235 (262)
60 COG0622 Predicted phosphoester 98.8 1.3E-07 2.9E-12 79.7 12.5 153 137-374 2-155 (172)
61 COG0420 SbcD DNA repair exonuc 98.8 7.3E-08 1.6E-12 93.2 11.8 73 137-209 1-89 (390)
62 cd07412 MPP_YhcR_N Bacillus su 98.8 4.1E-07 8.8E-12 84.2 16.2 213 137-362 1-270 (288)
63 cd07408 MPP_SA0022_N Staphyloc 98.7 2.7E-07 5.8E-12 84.0 13.4 209 137-362 1-242 (257)
64 cd07411 MPP_SoxB_N Thermus the 98.7 4.6E-07 1E-11 82.8 13.3 183 153-360 40-246 (264)
65 TIGR00282 metallophosphoestera 98.6 4.2E-06 9.1E-11 75.6 17.6 186 137-349 1-197 (266)
66 cd07382 MPP_DR1281 Deinococcus 98.6 3.2E-06 6.8E-11 76.2 16.7 183 138-349 1-194 (255)
67 cd07409 MPP_CD73_N CD73 ecto-5 98.6 1.1E-06 2.3E-11 81.1 13.4 157 153-329 39-219 (281)
68 COG2908 Uncharacterized protei 98.6 2.8E-07 6.1E-12 80.3 8.8 67 141-207 2-79 (237)
69 PRK04036 DNA polymerase II sma 98.5 1.1E-06 2.4E-11 87.2 12.8 75 134-208 241-343 (504)
70 cd07424 MPP_PrpA_PrpB PrpA and 98.5 2.9E-07 6.4E-12 80.9 7.7 64 138-208 2-67 (207)
71 cd07425 MPP_Shelphs Shewanella 98.5 2.3E-07 5E-12 81.5 6.1 166 140-330 1-181 (208)
72 KOG3662 Cell division control 98.5 1.4E-06 3E-11 82.2 11.5 113 134-255 46-182 (410)
73 TIGR00619 sbcd exonuclease Sbc 98.5 4.7E-07 1E-11 82.1 7.5 72 137-208 1-88 (253)
74 cd07407 MPP_YHR202W_N Saccharo 98.4 2.2E-05 4.8E-10 72.2 18.4 201 135-357 4-253 (282)
75 cd07386 MPP_DNA_pol_II_small_a 98.4 6.9E-06 1.5E-10 74.1 14.9 69 140-208 2-94 (243)
76 PRK09419 bifunctional 2',3'-cy 98.4 4.8E-06 1E-10 91.0 15.3 204 135-357 659-903 (1163)
77 PRK11439 pphA serine/threonine 98.4 1.1E-06 2.3E-11 78.0 7.4 73 128-207 8-82 (218)
78 cd07405 MPP_UshA_N Escherichia 98.4 1.5E-05 3.1E-10 73.7 15.0 184 137-329 1-222 (285)
79 cd07380 MPP_CWF19_N Schizosacc 98.3 1.5E-06 3.2E-11 71.8 7.3 119 140-336 1-130 (150)
80 cd07390 MPP_AQ1575 Aquifex aeo 98.3 9.3E-07 2E-11 75.0 6.3 42 161-208 41-82 (168)
81 PRK10966 exonuclease subunit S 98.3 1.3E-06 2.7E-11 84.5 7.7 72 137-208 1-87 (407)
82 PRK09968 serine/threonine-spec 98.3 3.2E-06 7E-11 74.8 9.8 64 137-207 15-80 (218)
83 cd08162 MPP_PhoA_N Synechococc 98.2 4.1E-05 8.9E-10 71.5 15.1 38 278-329 207-245 (313)
84 COG0737 UshA 5'-nucleotidase/2 98.2 2.8E-05 6E-10 78.1 14.5 213 134-361 24-277 (517)
85 PRK09558 ushA bifunctional UDP 98.1 9.4E-05 2E-09 74.8 14.9 186 134-328 32-257 (551)
86 TIGR01530 nadN NAD pyrophospha 98.0 0.00016 3.5E-09 72.9 14.6 157 154-329 40-219 (550)
87 cd07391 MPP_PF1019 Pyrococcus 97.9 1.2E-05 2.7E-10 68.4 5.1 52 156-208 35-88 (172)
88 COG1311 HYS2 Archaeal DNA poly 97.9 0.0003 6.5E-09 67.5 13.2 76 134-209 223-322 (481)
89 PRK11907 bifunctional 2',3'-cy 97.8 0.0011 2.4E-08 69.2 17.4 218 135-360 114-396 (814)
90 PHA02239 putative protein phos 97.8 3.9E-05 8.4E-10 68.6 5.8 69 137-207 1-72 (235)
91 TIGR00024 SbcD_rel_arch putati 97.8 4.7E-05 1E-09 67.5 6.2 69 137-207 15-101 (225)
92 PRK09419 bifunctional 2',3'-cy 97.8 0.00046 1E-08 75.8 15.0 87 267-359 223-317 (1163)
93 PRK09418 bifunctional 2',3'-cy 97.7 0.0014 3E-08 68.2 16.2 79 267-359 233-312 (780)
94 PF13277 YmdB: YmdB-like prote 97.6 0.0012 2.6E-08 58.6 11.9 178 140-348 1-191 (253)
95 PRK00166 apaH diadenosine tetr 97.6 0.0001 2.3E-09 67.3 5.2 66 137-207 1-68 (275)
96 cd07387 MPP_PolD2_C PolD2 (DNA 97.6 0.0022 4.8E-08 57.8 13.6 131 139-273 2-176 (257)
97 cd07423 MPP_PrpE Bacillus subt 97.5 0.00012 2.7E-09 65.5 5.3 67 138-207 2-79 (234)
98 COG1692 Calcineurin-like phosp 97.5 0.0037 8E-08 54.8 13.0 187 137-349 1-196 (266)
99 PRK09420 cpdB bifunctional 2', 97.4 0.0028 6.1E-08 65.1 14.3 89 265-360 205-301 (649)
100 KOG2863 RNA lariat debranching 97.4 0.0008 1.7E-08 61.8 8.9 173 137-327 1-229 (456)
101 COG4186 Predicted phosphoester 97.4 0.0042 9.1E-08 50.5 11.7 66 138-208 5-86 (186)
102 PRK13625 bis(5'-nucleosyl)-tet 97.4 0.00027 5.8E-09 63.8 5.2 68 137-207 1-78 (245)
103 TIGR01390 CycNucDiestase 2',3' 97.4 0.0034 7.4E-08 64.3 13.8 77 277-360 194-278 (626)
104 cd07421 MPP_Rhilphs Rhilph pho 97.3 0.00034 7.3E-09 63.8 5.5 67 138-207 3-79 (304)
105 cd07413 MPP_PA3087 Pseudomonas 97.3 0.00032 7E-09 62.3 5.1 66 139-207 1-75 (222)
106 PF00041 fn3: Fibronectin type 97.3 0.0027 5.8E-08 46.5 8.9 70 42-121 2-75 (85)
107 cd00144 MPP_PPP_family phospho 97.2 0.00045 9.8E-09 61.3 4.5 66 140-208 1-68 (225)
108 cd07422 MPP_ApaH Escherichia c 97.0 0.0008 1.7E-08 60.9 4.8 64 140-208 2-67 (257)
109 cd07381 MPP_CapA CapA and rela 97.0 0.02 4.3E-07 51.4 13.6 128 196-332 78-223 (239)
110 COG5555 Cytolysin, a secreted 97.0 0.00063 1.4E-08 60.6 3.5 166 163-329 127-335 (392)
111 TIGR00668 apaH bis(5'-nucleosy 96.9 0.0013 2.8E-08 59.8 4.8 65 138-207 2-68 (279)
112 smart00854 PGA_cap Bacterial c 96.9 0.033 7.1E-07 50.0 13.7 62 265-332 160-221 (239)
113 COG1407 Predicted ICC-like pho 96.7 0.004 8.6E-08 54.9 5.9 72 136-208 19-110 (235)
114 PF09587 PGA_cap: Bacterial ca 96.3 0.11 2.3E-06 47.0 13.1 64 263-332 169-232 (250)
115 KOG0196 Tyrosine kinase, EPH ( 96.2 0.035 7.5E-07 56.7 9.9 95 28-133 431-537 (996)
116 smart00156 PP2Ac Protein phosp 96.0 0.0095 2.1E-07 54.5 5.0 69 137-208 28-99 (271)
117 KOG2310 DNA repair exonuclease 96.0 0.018 4E-07 55.9 6.8 45 134-178 11-68 (646)
118 cd07416 MPP_PP2B PP2B, metallo 96.0 0.011 2.3E-07 55.1 5.1 68 138-208 44-114 (305)
119 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.6 0.016 3.4E-07 53.4 4.4 68 138-208 43-113 (285)
120 cd07420 MPP_RdgC Drosophila me 95.3 0.028 6.1E-07 52.5 5.2 68 138-208 52-123 (321)
121 cd07414 MPP_PP1_PPKL PP1, PPKL 95.3 0.022 4.8E-07 52.6 4.4 68 138-208 51-121 (293)
122 PTZ00239 serine/threonine prot 95.3 0.027 5.9E-07 52.2 4.9 68 138-208 44-114 (303)
123 PTZ00244 serine/threonine-prot 95.2 0.021 4.5E-07 52.8 3.9 68 139-208 54-123 (294)
124 KOG3325 Membrane coat complex 95.1 0.054 1.2E-06 43.7 5.3 60 306-373 97-157 (183)
125 KOG4419 5' nucleotidase [Nucle 94.9 0.12 2.5E-06 51.2 8.3 56 261-328 211-269 (602)
126 cd07418 MPP_PP7 PP7, metalloph 94.9 0.039 8.4E-07 52.6 4.8 69 137-208 66-138 (377)
127 KOG3947 Phosphoesterases [Gene 94.9 0.73 1.6E-05 41.4 12.3 69 134-209 59-127 (305)
128 PTZ00480 serine/threonine-prot 94.8 0.033 7.2E-07 52.0 4.1 68 138-208 60-130 (320)
129 cd07417 MPP_PP5_C PP5, C-termi 94.1 0.11 2.4E-06 48.5 5.9 70 137-208 60-132 (316)
130 KOG4221 Receptor mediating net 93.7 0.17 3.6E-06 54.1 6.7 85 35-132 611-712 (1381)
131 PF04042 DNA_pol_E_B: DNA poly 93.6 0.086 1.9E-06 46.2 4.0 113 139-253 1-136 (209)
132 cd07419 MPP_Bsu1_C Arabidopsis 93.5 0.11 2.4E-06 48.5 4.9 21 305-325 242-262 (311)
133 smart00060 FN3 Fibronectin typ 93.2 0.78 1.7E-05 31.8 8.1 71 43-121 4-76 (83)
134 cd00063 FN3 Fibronectin type 3 92.3 1.3 2.7E-05 31.7 8.3 70 42-121 3-76 (93)
135 KOG3513 Neural cell adhesion m 89.7 1.2 2.5E-05 47.7 7.7 75 38-121 818-896 (1051)
136 PF14008 Metallophos_C: Iron/z 85.3 0.7 1.5E-05 31.8 2.2 13 342-354 1-13 (62)
137 PF08139 LPAM_1: Prokaryotic m 84.9 0.5 1.1E-05 26.0 1.0 17 2-18 8-24 (25)
138 PRK13792 lysozyme inhibitor; P 82.7 7.1 0.00015 31.1 7.1 18 1-18 1-20 (127)
139 KOG2476 Uncharacterized conser 80.1 3.6 7.9E-05 39.8 5.4 66 136-205 5-75 (528)
140 KOG3513 Neural cell adhesion m 79.5 9.3 0.0002 41.2 8.7 74 41-121 616-693 (1051)
141 PF07353 Uroplakin_II: Uroplak 79.4 10 0.00022 31.2 6.9 16 104-119 104-119 (184)
142 KOG0372 Serine/threonine speci 79.2 5 0.00011 35.6 5.5 66 139-208 45-114 (303)
143 KOG0374 Serine/threonine speci 77.4 2.7 5.9E-05 39.5 3.7 70 138-210 60-133 (331)
144 PTZ00235 DNA polymerase epsilo 75.7 19 0.00041 33.1 8.5 75 134-208 25-122 (291)
145 KOG4221 Receptor mediating net 73.9 12 0.00026 40.8 7.6 81 42-131 523-611 (1381)
146 PRK11627 hypothetical protein; 71.6 10 0.00023 32.7 5.6 20 1-20 1-21 (192)
147 KOG0373 Serine/threonine speci 71.4 7.6 0.00016 33.9 4.6 65 139-208 48-117 (306)
148 KOG0371 Serine/threonine prote 68.5 7.8 0.00017 34.7 4.2 65 139-208 62-131 (319)
149 KOG0196 Tyrosine kinase, EPH ( 68.1 23 0.00049 37.2 7.8 97 20-121 314-417 (996)
150 PF01108 Tissue_fac: Tissue fa 66.4 35 0.00076 26.0 7.2 71 41-121 23-98 (107)
151 COG5633 Predicted periplasmic 64.0 25 0.00055 27.4 5.6 19 1-19 1-19 (123)
152 PF13473 Cupredoxin_1: Cupredo 63.7 12 0.00027 28.4 4.1 63 40-120 31-93 (104)
153 PF06291 Lambda_Bor: Bor prote 62.4 5.9 0.00013 29.9 2.0 24 1-24 1-24 (97)
154 COG2248 Predicted hydrolase (m 62.0 24 0.00052 31.7 5.9 73 134-207 174-249 (304)
155 PF10179 DUF2369: Uncharacteri 60.9 23 0.00049 32.8 5.9 18 103-120 16-33 (300)
156 KOG0375 Serine-threonine phosp 60.5 14 0.00031 34.6 4.5 68 138-208 89-159 (517)
157 PRK10301 hypothetical protein; 55.8 1E+02 0.0022 24.4 9.4 12 41-52 43-54 (124)
158 PF02402 Lysis_col: Lysis prot 55.6 4.9 0.00011 25.2 0.4 23 1-24 1-25 (46)
159 PRK13883 conjugal transfer pro 54.3 9.2 0.0002 31.5 2.0 19 1-19 1-19 (151)
160 PRK11443 lipoprotein; Provisio 52.6 9.2 0.0002 30.4 1.7 17 3-19 2-18 (124)
161 PHA03376 BARF1; Provisional 52.1 91 0.002 26.9 7.5 65 53-120 41-105 (221)
162 PF11153 DUF2931: Protein of u 51.7 15 0.00033 32.2 3.2 19 2-20 1-19 (216)
163 COG2843 PgsA Putative enzyme o 51.4 43 0.00093 32.1 6.2 62 264-332 210-272 (372)
164 PRK09810 entericidin A; Provis 51.1 9.6 0.00021 23.8 1.2 19 1-19 1-21 (41)
165 PF06874 FBPase_2: Firmicute f 49.1 13 0.00028 37.7 2.5 44 158-207 180-223 (640)
166 PRK10397 lipoprotein; Provisio 48.4 12 0.00026 29.6 1.6 18 2-19 1-18 (137)
167 KOG4258 Insulin/growth factor 48.0 74 0.0016 33.7 7.6 104 41-145 487-623 (1025)
168 PRK11372 lysozyme inhibitor; P 47.9 51 0.0011 25.6 5.1 17 2-18 3-19 (109)
169 cd02856 Glycogen_debranching_e 47.5 27 0.00058 26.5 3.6 25 97-121 42-66 (103)
170 PF01784 NIF3: NIF3 (NGG1p int 47.4 23 0.0005 31.7 3.6 44 282-327 55-98 (241)
171 TIGR00752 slp outer membrane l 47.1 11 0.00023 32.2 1.3 18 1-18 2-19 (182)
172 PF05643 DUF799: Putative bact 46.9 12 0.00027 32.6 1.7 19 1-19 1-19 (215)
173 PRK13835 conjugal transfer pro 46.4 18 0.00038 29.5 2.4 19 1-19 1-19 (145)
174 cd02852 Isoamylase_N_term Isoa 45.8 28 0.00061 27.2 3.6 23 99-121 48-70 (119)
175 PHA03008 hypothetical protein; 44.4 50 0.0011 28.4 4.8 43 282-329 163-205 (234)
176 PF14292 SusE: SusE outer memb 44.4 74 0.0016 24.9 5.8 57 7-66 1-57 (122)
177 TIGR02855 spore_yabG sporulati 44.0 20 0.00043 32.5 2.6 50 265-327 115-165 (283)
178 PRK10449 heat-inducible protei 44.0 14 0.00031 30.0 1.6 19 1-19 1-19 (140)
179 PF05582 Peptidase_U57: YabG p 43.4 24 0.00052 32.2 3.1 51 265-328 116-167 (287)
180 cd02853 MTHase_N_term Maltooli 43.0 32 0.0007 25.0 3.3 22 99-121 39-60 (85)
181 PRK10799 metal-binding protein 40.1 65 0.0014 29.0 5.4 43 283-328 59-101 (247)
182 cd02860 Pullulanase_N_term Pul 39.6 42 0.0009 25.2 3.5 25 97-121 44-68 (100)
183 PRK13791 lysozyme inhibitor; P 39.6 1.4E+02 0.003 23.3 6.4 16 3-18 5-20 (113)
184 PF09294 Interfer-bind: Interf 38.9 28 0.0006 26.3 2.5 19 103-121 68-86 (106)
185 TIGR00486 YbgI_SA1388 dinuclea 37.7 71 0.0015 28.7 5.3 43 282-327 59-101 (249)
186 PRK09973 putative outer membra 36.7 25 0.00053 25.9 1.7 19 1-19 1-22 (85)
187 KOG3818 DNA polymerase epsilon 36.3 1.1E+02 0.0023 30.0 6.2 75 134-208 280-369 (525)
188 PF14054 DUF4249: Domain of un 35.7 2.5E+02 0.0055 25.5 8.9 20 108-127 95-115 (298)
189 PRK11449 putative deoxyribonuc 35.4 48 0.001 30.0 3.8 141 152-331 22-162 (258)
190 PRK13859 type IV secretion sys 34.7 45 0.00097 21.8 2.4 17 4-20 2-18 (55)
191 TIGR03000 plancto_dom_1 Planct 34.3 91 0.002 22.4 4.2 25 97-121 24-48 (75)
192 TIGR03516 ppisom_GldI peptidyl 34.2 42 0.00091 28.5 3.0 19 1-19 1-19 (177)
193 COG3855 Fbp Uncharacterized pr 33.4 35 0.00076 33.3 2.6 43 159-207 187-229 (648)
194 KOG4063 Major epididymal secre 33.2 2.6E+02 0.0057 23.0 7.1 13 107-119 108-120 (158)
195 PF13605 DUF4141: Domain of un 30.6 37 0.0008 22.7 1.6 26 2-27 2-27 (55)
196 PRK10425 DNase TatD; Provision 30.3 3.5E+02 0.0075 24.4 8.5 142 151-332 17-158 (258)
197 PRK09918 putative fimbrial cha 29.9 3.8E+02 0.0082 23.7 8.5 20 3-22 7-26 (230)
198 PF02922 CBM_48: Carbohydrate- 29.9 1.1E+02 0.0023 21.9 4.3 26 97-122 46-73 (85)
199 KOG4222 Axon guidance receptor 29.9 76 0.0016 34.8 4.6 81 36-121 742-826 (1281)
200 PRK13861 type IV secretion sys 29.4 4.6E+02 0.01 24.3 10.2 18 1-18 1-18 (292)
201 PRK14864 putative biofilm stre 29.3 31 0.00067 26.5 1.3 19 2-20 5-23 (104)
202 TIGR03352 VI_chp_3 type VI sec 28.7 82 0.0018 25.8 3.8 15 4-18 3-17 (146)
203 PF11777 DUF3316: Protein of u 27.3 32 0.00068 26.9 1.1 18 1-18 1-18 (114)
204 PF03032 Brevenin: Brevenin/es 26.7 40 0.00086 21.7 1.2 17 1-17 3-21 (46)
205 PRK10081 entericidin B membran 26.5 46 0.00099 21.5 1.5 7 13-19 18-24 (48)
206 COG3426 Butyrate kinase [Energ 26.3 84 0.0018 28.9 3.6 42 160-208 294-336 (358)
207 PF15621 PROL5-SMR: Proline-ri 25.6 45 0.00097 25.9 1.5 26 2-27 1-26 (113)
208 KOG1382 Multiple inositol poly 25.4 87 0.0019 30.7 3.8 50 1-50 1-70 (467)
209 PRK10812 putative DNAse; Provi 24.5 94 0.002 28.2 3.8 136 151-328 22-157 (265)
210 PRK12788 flgH flagellar basal 24.5 85 0.0018 28.0 3.3 34 3-36 5-40 (234)
211 TIGR02722 lp_ uncharacterized 23.8 97 0.0021 26.6 3.5 16 5-20 6-21 (189)
212 PF11873 DUF3393: Domain of un 23.8 44 0.00095 29.1 1.3 17 2-18 1-17 (204)
213 PRK13733 conjugal transfer pro 23.3 55 0.0012 27.4 1.8 19 1-19 1-21 (171)
214 cd04502 SGNH_hydrolase_like_7 23.1 2.8E+02 0.006 22.7 6.2 34 160-193 48-84 (171)
215 cd02850 Cellulase_N_term Cellu 23.1 1.2E+02 0.0026 22.1 3.4 23 99-121 55-78 (86)
216 cd01987 USP_OKCHK USP domain i 22.8 3.4E+02 0.0074 20.5 7.7 24 304-327 73-96 (124)
217 COG5510 Predicted small secret 22.7 54 0.0012 20.7 1.2 15 5-19 10-24 (44)
218 PF10179 DUF2369: Uncharacteri 21.9 76 0.0016 29.4 2.6 19 103-121 261-279 (300)
219 PF08138 Sex_peptide: Sex pept 21.8 55 0.0012 21.6 1.2 18 1-18 1-18 (56)
220 PF09949 DUF2183: Uncharacteri 21.7 1.1E+02 0.0024 23.3 3.0 28 136-165 64-91 (100)
221 TIGR03780 Bac_Flav_CT_N Bacter 21.4 6.2E+02 0.013 23.4 8.3 9 112-120 100-108 (285)
222 PF10333 Pga1: GPI-Mannosyltra 20.8 1.1E+02 0.0025 26.0 3.3 24 97-120 61-84 (180)
223 PRK15211 fimbrial chaperone pr 20.8 2.2E+02 0.0047 25.3 5.2 23 1-23 3-25 (229)
224 PRK10626 hypothetical protein; 20.2 1.4E+02 0.003 26.7 3.7 20 1-20 1-20 (239)
225 PRK15249 fimbrial chaperone pr 20.1 3.6E+02 0.0079 24.3 6.6 20 4-23 12-31 (253)
No 1
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=1.1e-70 Score=529.44 Aligned_cols=364 Identities=59% Similarity=1.079 Sum_probs=310.6
Q ss_pred CcchhhHHHHHHHhhcCCCCccccCCCCCCccc-CCCCCCCCCCceEEEEecCCCeEEEEEEcCCCCCCcEEEEeccCCC
Q 017051 1 MELKFVLTAFVFISATVTTAEYIRPQPRRTLEF-PWDPKPSSHPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSPGG 79 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~v~l~~~~~~~~~i~W~t~~~~~~~~v~y~~~~~~ 79 (378)
|.+-|.++.++++....++.+|+|++|+..+.+ +.+......|+||||++++.++|+|+|.|.+. ..+.|+||++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~qvhls~~~~~~m~V~W~T~~~-~~~~V~yG~~~~~ 79 (427)
T PLN02533 1 MVKVLGLVAILLIVLAGNVLSYDRPGTRKNLVIHPDNEDDPTHPDQVHISLVGPDKMRISWITQDS-IPPSVVYGTVSGK 79 (427)
T ss_pred ChhhHHHHHHHHhhhccCcccccCCCccccccccccCCCCCCCCceEEEEEcCCCeEEEEEECCCC-CCCEEEEecCCCC
Confidence 445555555566666667799999998875543 23457888999999999999999999999964 5689999999888
Q ss_pred CCeeEEeeeeEEeee-eeccCeEEEEEECCCCCCCEEEEEeCc--cCceeEEECCCCCCCeEEEEEcccCCCCChHHHHH
Q 017051 80 YNCGAEGESTSYRYL-FYRSGKIHHTVIGPLEHDTVYFYRCGR--QGPEFEFKTPPAQFPITFAVAGDLGQTGWTKSTLD 156 (378)
Q Consensus 80 ~~~~~~~~~~~~~~~-~~~~~~~h~~~l~~L~p~t~Y~Y~v~~--~s~~~~F~t~p~~~~~~f~~~gD~~~~~~~~~~~~ 156 (378)
++..+.|.+++|.+. ...++++|+|+|+||+|+|+|+|||+. ++++++|+|+|...+++|+++||+|...+...+++
T Consensus 80 l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T~Y~Yrvg~~~~s~~~~F~T~p~~~~~~f~v~GDlG~~~~~~~tl~ 159 (427)
T PLN02533 80 YEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNTVYYYKCGGPSSTQEFSFRTPPSKFPIKFAVSGDLGTSEWTKSTLE 159 (427)
T ss_pred CcceEEEEEEEEeccccccCCeEEEEEeCCCCCCCEEEEEECCCCCccceEEECCCCCCCeEEEEEEeCCCCcccHHHHH
Confidence 888888887777642 246789999999999999999999985 47889999999878999999999998777778889
Q ss_pred HhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcc-cchhhhchhcccCCCCCCCCCC
Q 017051 157 HIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLI-MDAFQSYNARWKMPFEESGSNS 235 (378)
Q Consensus 157 ~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~ 235 (378)
.+.+.+|||||++||++|++..+..|+.|++.++++.+.+|+|+++||||....+.. ...+..|.++|.+|.+..+...
T Consensus 160 ~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~~~~g~~~ 239 (427)
T PLN02533 160 HVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPEKFTAYNARWRMPFEESGSTS 239 (427)
T ss_pred HHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCceEEeCccccccccccccCcCccchhhcccCCccccCCCC
Confidence 998899999999999999888788999999999999888999999999999643211 2467788899999986655567
Q ss_pred CceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCC--chHHHHHHHHHHH
Q 017051 236 NLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGE--GDGMMAIMEPLLY 313 (378)
Q Consensus 236 ~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~--~~~~~~~l~~l~~ 313 (378)
+.||+|++|++|||+||++.++....+|++||+++|++++++++||+||++|+|+|++...+.+. ...+++.|+++|.
T Consensus 240 ~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~ 319 (427)
T PLN02533 240 NLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLY 319 (427)
T ss_pred CceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHH
Confidence 89999999999999999998887789999999999999887778999999999999876544332 2346789999999
Q ss_pred hcCCcEEEecCccccceeecccCCCcCCCccEEEEeCCCCCCCCcccccccc
Q 017051 314 AASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYVLT 365 (378)
Q Consensus 314 ~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~~~~~p 365 (378)
+++||++|+||+|.|+|+.|+++++.+++|++||++|+||+.++....+.+|
T Consensus 320 ~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~ 371 (427)
T PLN02533 320 KARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKYIDP 371 (427)
T ss_pred HhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccccCCC
Confidence 9999999999999999999999999999999999999999999876666444
No 2
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-64 Score=470.96 Aligned_cols=330 Identities=42% Similarity=0.664 Sum_probs=279.8
Q ss_pred CCCCCCceEEEEecC-CCeEEEEEEcCCCCCCcEEEEeccCCCC-----CeeEEeeeeEEeeeeeccCeEEEEEECCCCC
Q 017051 38 KPSSHPQQVHISLAG-DSHMRVTWITDDESSPSVVEYGTSPGGY-----NCGAEGESTSYRYLFYRSGKIHHTVIGPLEH 111 (378)
Q Consensus 38 ~~~~~p~~v~l~~~~-~~~~~i~W~t~~~~~~~~v~y~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~l~~L~p 111 (378)
.....|+||||++++ .++|+|+|.|.+. ....|+|+...... +..+.+.+..+.......+++|+|+|++|+|
T Consensus 40 ~~~~~peQvhlS~~~~~~~m~VswvT~~~-~~~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~~~~~sg~ih~~~~~~L~~ 118 (452)
T KOG1378|consen 40 SVVNSPEQVHLSFTDNLNEMRVSWVTGDG-EENVVRYGEVKDKLDNSAARGMTEAWTDGYANGWRDSGYIHDAVMKNLEP 118 (452)
T ss_pred ccCCCCCeEEEeccCCCCcEEEEEeCCCC-CCceEEEeecCCCccccccccceEEEecccccccceeeeEeeeeecCCCC
Confidence 566789999999998 5599999999964 44899999775542 2233334334444346889999999999999
Q ss_pred CCEEEEEeCcc---CceeEEECCCC-CCCeEEEEEcccCCCCChHHHHHHhhc-CCCcEEEeccccccccchh-hhHHHH
Q 017051 112 DTVYFYRCGRQ---GPEFEFKTPPA-QFPITFAVAGDLGQTGWTKSTLDHIGQ-CKYDVHLLPGDLSYADYMQ-HRWDTF 185 (378)
Q Consensus 112 ~t~Y~Y~v~~~---s~~~~F~t~p~-~~~~~f~~~gD~~~~~~~~~~~~~i~~-~~~d~vi~~GDl~~~~~~~-~~~~~~ 185 (378)
+|+|+|+||+. |++|+|+|+|. ..+.+|+++||+|.......++..... .++|+|||+|||+|+.+.. .+||.|
T Consensus 119 ~t~YyY~~Gs~~~wS~~f~F~t~p~~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f 198 (452)
T KOG1378|consen 119 NTRYYYQVGSDLKWSEIFSFKTPPGQDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEF 198 (452)
T ss_pred CceEEEEeCCCCCcccceEeECCCCccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCCCccchHHH
Confidence 99999999974 79999999995 589999999999988776666666654 4699999999999999887 599999
Q ss_pred HHhhHhhhhCCceeecCCCCccCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCC--CCcHHH
Q 017051 186 GELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY--DEYSDQ 263 (378)
Q Consensus 186 ~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~--~~~~~Q 263 (378)
+++++++++.+|+|++.||||.+..+. ..|..|.+||.+|.+..+...+.||||++|++|||+|+|+.++ ....+|
T Consensus 199 ~r~vEp~As~vPymv~~GNHE~d~~~~--~~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~Q 276 (452)
T KOG1378|consen 199 GRQVEPIASYVPYMVCSGNHEIDWPPQ--PCFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQ 276 (452)
T ss_pred HhhhhhhhccCceEEecccccccCCCc--ccccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchH
Confidence 999999999999999999999976544 2689999999999987777778999999999999999998875 346899
Q ss_pred HHHHHHHhhhccCCCCCeEEEEeccccccCCCC-CCCCch--HHHHHHHHHHHhcCCcEEEecCccccceeecccCCCc-
Q 017051 264 YRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA-HQGEGD--GMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKP- 339 (378)
Q Consensus 264 ~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~-~~~~~~--~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~- 339 (378)
++||+++|++++|+++||+||+.|.|+|++... +..++. .++..|+++|.+++||++|.||.|.|||++|++|.+.
T Consensus 277 Y~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~ 356 (452)
T KOG1378|consen 277 YQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCG 356 (452)
T ss_pred HHHHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceee
Confidence 999999999999865899999999999998874 444444 6788999999999999999999999999999998764
Q ss_pred ---------CCCccEEEEeCCCCCCCCcccccc-ccccCce
Q 017051 340 ---------DPCGAVYITIGDGGNKEGLARKYV-LTYRNIF 370 (378)
Q Consensus 340 ---------~~~g~~yiv~G~gG~~~~~~~~~~-~p~~~~~ 370 (378)
++++|+||++|+||+.++....+. .|.+..|
T Consensus 357 ~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~~~~p~~Sa~ 397 (452)
T KOG1378|consen 357 TGWGPVHLVDGMAPIYITVGDGGNHEHLDPFSSPQPEWSAF 397 (452)
T ss_pred ccCCcccccCCCCCEEEEEccCCcccccCcccCCCCccccc
Confidence 789999999999999999887764 5554443
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=1.3e-39 Score=302.83 Aligned_cols=225 Identities=49% Similarity=0.826 Sum_probs=177.0
Q ss_pred CCCeEEEEEcccCCC-CChHHHHHHhhc--CCCcEEEeccccccccchh--hhHHHHHHhhHhhhhCCceeecCCCCccC
Q 017051 134 QFPITFAVAGDLGQT-GWTKSTLDHIGQ--CKYDVHLLPGDLSYADYMQ--HRWDTFGELVQPLASARPWMVTQGNHEKE 208 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~-~~~~~~~~~i~~--~~~d~vi~~GDl~~~~~~~--~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 208 (378)
+.++||+++||+|.. .....+++++.+ .+|||||++||++|+.+.. .+|+.|++.++++...+|+++++||||..
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 81 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHEAD 81 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCcccccc
Confidence 468999999999863 445778888865 7999999999999877654 78999999999998889999999999995
Q ss_pred CCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCC---CCcHHHHHHHHHHhhhccCCCCCeEEEE
Q 017051 209 SIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY---DEYSDQYRWLKDDLSKVDRKKTPWLLVL 285 (378)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~---~~~~~Q~~WL~~~L~~~~~~~~~~~iv~ 285 (378)
..... .....+..++.++........+.||+|++|+++||+|||.... ....+|++||+++|+++.+++.+|+||+
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~ 160 (294)
T cd00839 82 YNFSF-YKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVM 160 (294)
T ss_pred cCCCC-cccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEE
Confidence 43221 0011111112233323333457899999999999999998654 4568999999999999866567899999
Q ss_pred eccccccCCCCCCC--CchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCC--------cCCCccEEEEeCCCCCC
Q 017051 286 LHVPWYNSNEAHQG--EGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGK--------PDPCGAVYITIGDGGNK 355 (378)
Q Consensus 286 ~H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~--------~~~~g~~yiv~G~gG~~ 355 (378)
+|+|+|+....... .....++.|.++|++++|+++|+||+|.|+|+.|+++++ .+++|++||++|+||+.
T Consensus 161 ~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~ 240 (294)
T cd00839 161 GHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGND 240 (294)
T ss_pred eccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccc
Confidence 99999987654322 234578999999999999999999999999999998765 46789999999999987
Q ss_pred CCcc
Q 017051 356 EGLA 359 (378)
Q Consensus 356 ~~~~ 359 (378)
....
T Consensus 241 ~~~~ 244 (294)
T cd00839 241 EGLD 244 (294)
T ss_pred cCcC
Confidence 6543
No 4
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.97 E-value=3.8e-30 Score=235.17 Aligned_cols=220 Identities=20% Similarity=0.294 Sum_probs=159.0
Q ss_pred CCCeEEEEEcccCCCC---C--------------hHHHHHHhhcC--CCcEEEeccccccccchh----hhHHHHHHhhH
Q 017051 134 QFPITFAVAGDLGQTG---W--------------TKSTLDHIGQC--KYDVHLLPGDLSYADYMQ----HRWDTFGELVQ 190 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~---~--------------~~~~~~~i~~~--~~d~vi~~GDl~~~~~~~----~~~~~~~~~~~ 190 (378)
+++++|+++||+|.+. . .+.+++.+.+. +||+||++||+++.+... .+|+.+.+.++
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 3689999999998763 1 12344555554 999999999999876542 34556666666
Q ss_pred hhhhCCceeecCCCCccCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCC------CCcHHHH
Q 017051 191 PLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY------DEYSDQY 264 (378)
Q Consensus 191 ~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~------~~~~~Q~ 264 (378)
.+...+|+++++||||....+. ......|...| +..+|+|++++++||+|||.... ....+|+
T Consensus 82 ~~~~~vp~~~i~GNHD~~~~~~-~~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~ql 150 (262)
T cd07395 82 LLDPDIPLVCVCGNHDVGNTPT-EESIKDYRDVF----------GDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQAQD 150 (262)
T ss_pred hccCCCcEEEeCCCCCCCCCCC-hhHHHHHHHHh----------CCcceEEEECCEEEEEeccccccCccccccchHHHH
Confidence 6655699999999999953221 12233333333 24688999999999999995322 1247899
Q ss_pred HHHHHHhhhccCCCCCeEEEEeccccccCCCCCC----CCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcC
Q 017051 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQ----GEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPD 340 (378)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~----~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~ 340 (378)
+||+++|+++.+.+.+++||++|+|++....... ......++.|.++|++++|+++||||+|.+.+.. +
T Consensus 151 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~--~----- 223 (262)
T cd07395 151 VWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGR--Y----- 223 (262)
T ss_pred HHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceE--E-----
Confidence 9999999998633556899999999986443211 1123467899999999999999999999987643 2
Q ss_pred CCccEEEEeCCCCCCCCccccccccccCceeccccc
Q 017051 341 PCGAVYITIGDGGNKEGLARKYVLTYRNIFELSNSN 376 (378)
Q Consensus 341 ~~g~~yiv~G~gG~~~~~~~~~~~p~~~~~e~~~~~ 376 (378)
.|+.|+++++.|...+ ...|+|++|+++.+.
T Consensus 224 -~g~~~~~~~~~~~~~~----~~~~g~~~~~v~~~~ 254 (262)
T cd07395 224 -GGLEMVVTSAIGAQLG----NDKSGLRIVKVTEDK 254 (262)
T ss_pred -CCEEEEEcCceecccC----CCCCCcEEEEECCCc
Confidence 4788888888776433 246999999997654
No 5
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.97 E-value=3e-30 Score=241.01 Aligned_cols=223 Identities=19% Similarity=0.267 Sum_probs=155.0
Q ss_pred CCCeEEEEEcccCCCCChHHHHHH-h----hcCCCcEEEeccccccccch---hhhHHH-HHHhhHhhh--hCCceeecC
Q 017051 134 QFPITFAVAGDLGQTGWTKSTLDH-I----GQCKYDVHLLPGDLSYADYM---QHRWDT-FGELVQPLA--SARPWMVTQ 202 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~~~~~~~-i----~~~~~d~vi~~GDl~~~~~~---~~~~~~-~~~~~~~l~--~~~P~~~v~ 202 (378)
...++|+++||+|.+...+..+++ | ++.++||||.+||+.+.+-. +.+|+. |-+...... -.+||++|+
T Consensus 24 ~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vL 103 (394)
T PTZ00422 24 KAQLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVL 103 (394)
T ss_pred CCeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeC
Confidence 678999999999976555544433 2 36799999999999843222 456765 333333322 358999999
Q ss_pred CCCccCCCCcccch-hh------------------hchhcccCCCCCCCCCCCceEEE----Ee-------------CCE
Q 017051 203 GNHEKESIPLIMDA-FQ------------------SYNARWKMPFEESGSNSNLYYSF----DV-------------AGA 246 (378)
Q Consensus 203 GNHD~~~~~~~~~~-~~------------------~~~~~~~~p~~~~~~~~~~~ysf----~~-------------g~v 246 (378)
||||+.++...+-. +. ....+|.||. .||.+ .. ..+
T Consensus 104 GNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~--------~yY~~~~~f~~~~~~~~~~~~~~~~~v 175 (394)
T PTZ00422 104 GQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN--------YWYHYFTHFTDTSGPSLLKSGHKDMSV 175 (394)
T ss_pred CcccccCCchhhhccccccccccccccccccccccccCCCccCCc--------hhheeeeeeecccccccccccCCCCEE
Confidence 99999654332111 10 1125677774 67754 21 128
Q ss_pred EEEEEcCcCC-----CC-CcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEE
Q 017051 247 HLIMLGSYAD-----YD-EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLV 320 (378)
Q Consensus 247 ~fi~ldt~~~-----~~-~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlv 320 (378)
.||++||... +. ....|++||+++|+.+.+ .++|+||++|||+|+++.. +....++..|+|+|++|+||++
T Consensus 176 ~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~k-~a~WkIVvGHhPIySsG~h--g~~~~L~~~L~PLL~ky~VdlY 252 (394)
T PTZ00422 176 AFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAPK-IADYIIVVGDKPIYSSGSS--KGDSYLSYYLLPLLKDAQVDLY 252 (394)
T ss_pred EEEEEECchhcccCCccccCHHHHHHHHHHHHhhcc-CCCeEEEEecCceeecCCC--CCCHHHHHHHHHHHHHcCcCEE
Confidence 9999999521 11 236889999999976543 6789999999999998752 2334578899999999999999
Q ss_pred EecCccccceeecccCCCcCCCccEEEEeCCCCCCCCccc------cc--cccccCceecccc
Q 017051 321 LAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLAR------KY--VLTYRNIFELSNS 375 (378)
Q Consensus 321 l~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~------~~--~~p~~~~~e~~~~ 375 (378)
|+||+|.+|+..+ +++.||++|+||+..+... .| ..+++..+|+..+
T Consensus 253 isGHDH~lq~i~~--------~gt~yIvSGaGs~~~~~~~~~~~~s~F~~~~~GF~~~~l~~~ 307 (394)
T PTZ00422 253 ISGYDRNMEVLTD--------EGTAHINCGSGGNSGRKSIMKNSKSLFYSEDIGFCIHELNAE 307 (394)
T ss_pred EEccccceEEecC--------CCceEEEeCccccccCCCCCCCCCcceecCCCCEEEEEEecC
Confidence 9999999999752 5899999999987544211 11 3456666766554
No 6
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.97 E-value=2e-30 Score=239.02 Aligned_cols=203 Identities=24% Similarity=0.406 Sum_probs=143.6
Q ss_pred eEEEEEcccCCC-CChH-HHH---H-HhhcCCCcEEEeccccccccch----hhhH-HHHHHhhHhhhhCCceeecCCCC
Q 017051 137 ITFAVAGDLGQT-GWTK-STL---D-HIGQCKYDVHLLPGDLSYADYM----QHRW-DTFGELVQPLASARPWMVTQGNH 205 (378)
Q Consensus 137 ~~f~~~gD~~~~-~~~~-~~~---~-~i~~~~~d~vi~~GDl~~~~~~----~~~~-~~~~~~~~~l~~~~P~~~v~GNH 205 (378)
++|+++||+|.. ...+ .+. . .+++.+|||||++||++|.++. ...| +.|...+..+...+|+++++|||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 80 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNH 80 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCc
Confidence 489999999975 2222 222 2 2335799999999999987653 1233 33445555444569999999999
Q ss_pred ccCCCCcccchhhh--chhcccCCCCCCCCCCCceEEEEeC------CEEEEEEcCcCCC---------------CCcHH
Q 017051 206 EKESIPLIMDAFQS--YNARWKMPFEESGSNSNLYYSFDVA------GAHLIMLGSYADY---------------DEYSD 262 (378)
Q Consensus 206 D~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~ysf~~g------~v~fi~ldt~~~~---------------~~~~~ 262 (378)
|..........+.. +..+|.+| ..||+|+++ +++||+|||.... ....+
T Consensus 81 D~~~~~~~~~~~~~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~ 152 (277)
T cd07378 81 DYSGNVSAQIDYTKRPNSPRWTMP--------AYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEE 152 (277)
T ss_pred ccCCCchheeehhccCCCCCccCc--------chheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHH
Confidence 99632211111111 12223233 579999998 7999999996421 13589
Q ss_pred HHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCC
Q 017051 263 QYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPC 342 (378)
Q Consensus 263 Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~ 342 (378)
|++||+++|+++. .+|+||++|+|+++..... .....++.|.+++++++|+++|+||.|.+++..+. ..
T Consensus 153 Q~~wL~~~L~~~~---~~~~iv~~H~P~~~~~~~~--~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~------~~ 221 (277)
T cd07378 153 QLAWLEKTLAAST---ADWKIVVGHHPIYSSGEHG--PTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDD------GS 221 (277)
T ss_pred HHHHHHHHHHhcC---CCeEEEEeCccceeCCCCC--CcHHHHHHHHHHHHHcCCCEEEeCCcccceeeecC------CC
Confidence 9999999999874 3799999999998765322 22456899999999999999999999999887641 25
Q ss_pred ccEEEEeCCCCCCCCc
Q 017051 343 GAVYITIGDGGNKEGL 358 (378)
Q Consensus 343 g~~yiv~G~gG~~~~~ 358 (378)
++.||++|+||...+.
T Consensus 222 ~~~~i~~G~~~~~~~~ 237 (277)
T cd07378 222 GTSFVVSGAGSKARPS 237 (277)
T ss_pred CcEEEEeCCCcccCCC
Confidence 8999999998875443
No 7
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.94 E-value=3.1e-25 Score=202.91 Aligned_cols=209 Identities=17% Similarity=0.182 Sum_probs=141.8
Q ss_pred eEEEEEcccCCCCC--------------hHHHHHHhhcCCCcEEEeccccccccch--hhhHHHHHHhhHhhhhCCceee
Q 017051 137 ITFAVAGDLGQTGW--------------TKSTLDHIGQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLASARPWMV 200 (378)
Q Consensus 137 ~~f~~~gD~~~~~~--------------~~~~~~~i~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~~~~~l~~~~P~~~ 200 (378)
|||+++||+|.... ..++++.+++.+||+||++||+++.+.. ...|+.+.+.+..+ .+|+++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l--~~p~~~ 78 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRL--KGPVHH 78 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhc--CCCEEE
Confidence 69999999995431 1345666777789999999999975542 13455555555544 389999
Q ss_pred cCCCCccCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCC------------------------
Q 017051 201 TQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYAD------------------------ 256 (378)
Q Consensus 201 v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~------------------------ 256 (378)
++||||...... . .+...+ ....+..||+|++++++||+||+...
T Consensus 79 v~GNHD~~~~~~---~--~~~~~~------~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (267)
T cd07396 79 VLGNHDLYNPSR---E--YLLLYT------LLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLY 147 (267)
T ss_pred ecCccccccccH---h--hhhccc------ccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhh
Confidence 999999953211 0 010001 01124579999999999999999521
Q ss_pred ----------CCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhc-CCcEEEecCc
Q 017051 257 ----------YDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHV 325 (378)
Q Consensus 257 ----------~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~vdlvl~GH~ 325 (378)
.....+|++||+++|+++.. +..++||++|+|++...... ......++.+.++++++ +|+++|+||+
T Consensus 148 ~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~-~~~~viV~~Hhp~~~~~~~~-~~~~~~~~~~~~ll~~~~~V~~v~~GH~ 225 (267)
T cd07396 148 LSEPRFVDWNGGIGEEQLQWLRNELQEADA-NGEKVIIFSHFPLHPESTSP-HGLLWNHEEVLSILRAYGCVKACISGHD 225 (267)
T ss_pred ccCccceeccCcCCHHHHHHHHHHHHHHHh-cCCeEEEEEeccCCCCCCCc-cccccCHHHHHHHHHhCCCEEEEEcCCc
Confidence 01247999999999998754 22458999999987654311 11112357889999996 7999999999
Q ss_pred cccceeecccCCCcCCCccEEEEeCCCCCCCCccccccccccCceecc
Q 017051 326 HAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYVLTYRNIFELS 373 (378)
Q Consensus 326 H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~~~~~p~~~~~e~~ 373 (378)
|.+.... .+|+.|+++|+-+.. +. .-|.+.++++-
T Consensus 226 H~~~~~~--------~~gi~~~~~~a~~~~-~~----~~~~~~~~~~~ 260 (267)
T cd07396 226 HEGGYAQ--------RHGIHFLTLEGMVET-PP----ESNAFGVVIVY 260 (267)
T ss_pred CCCCccc--------cCCeeEEEechhhcC-CC----CCCceEEEEEe
Confidence 9986443 258999998875543 21 23566666653
No 8
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.93 E-value=7.9e-25 Score=197.50 Aligned_cols=209 Identities=23% Similarity=0.264 Sum_probs=146.3
Q ss_pred EEEEEcccCCCCC-------------hHHHHHHhhcC--CCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecC
Q 017051 138 TFAVAGDLGQTGW-------------TKSTLDHIGQC--KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQ 202 (378)
Q Consensus 138 ~f~~~gD~~~~~~-------------~~~~~~~i~~~--~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~ 202 (378)
||+++||+|.+.. .+++++.+++. +||+||++||+++.+. ...|+.+.+.++.+ .+|++.++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~-~~~~~~~~~~l~~~--~~p~~~v~ 77 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGS-PESYERLRELLAAL--PIPVYLLP 77 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC-HHHHHHHHHHHhhc--CCCEEEeC
Confidence 6999999997642 13455555555 9999999999998654 34566666666665 58999999
Q ss_pred CCCccCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCC----CCcHHHHHHHHHHhhhccCCC
Q 017051 203 GNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY----DEYSDQYRWLKDDLSKVDRKK 278 (378)
Q Consensus 203 GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~----~~~~~Q~~WL~~~L~~~~~~~ 278 (378)
||||... .+ ...|..... .....+|+|++++++||+||+.... ....+|++||++.|++..
T Consensus 78 GNHD~~~------~~---~~~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~--- 142 (240)
T cd07402 78 GNHDDRA------AM---RAVFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAP--- 142 (240)
T ss_pred CCCCCHH------HH---HHhhccccc---cccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCC---
Confidence 9999831 11 122211100 1235788999999999999986432 124789999999999874
Q ss_pred CCeEEEEeccccccCCCCCC-CCchHHHHHHHHHHHhc-CCcEEEecCccccceeecccCCCcCCCccEEEEeCCCCCCC
Q 017051 279 TPWLLVLLHVPWYNSNEAHQ-GEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKE 356 (378)
Q Consensus 279 ~~~~iv~~H~P~~~~~~~~~-~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~ 356 (378)
.+++|+++|+|++....... ......++.+.++++++ +++++|+||+|...... .+|+.++++|+.|..-
T Consensus 143 ~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~--------~~g~~~~~~gs~~~~~ 214 (240)
T cd07402 143 DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGS--------WGGIPLLTAPSTCHQF 214 (240)
T ss_pred CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeE--------ECCEEEEEcCcceeee
Confidence 23589999999876543111 11112368999999999 99999999999975544 2588899999877654
Q ss_pred Ccccc----c-cccccCceec
Q 017051 357 GLARK----Y-VLTYRNIFEL 372 (378)
Q Consensus 357 ~~~~~----~-~~p~~~~~e~ 372 (378)
..... . ..++|+.|.|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ 235 (240)
T cd07402 215 APDLDDFALDALAPGYRALSL 235 (240)
T ss_pred cCCCCcccccccCCCCcEEEE
Confidence 33322 1 3567777776
No 9
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.92 E-value=1.4e-23 Score=206.05 Aligned_cols=232 Identities=22% Similarity=0.293 Sum_probs=128.2
Q ss_pred eccCeEEEEEECCCCCCCEEEEEeCc-----cCceeEEECCCC--CCCeEEEEEcccCCCCChHHHHHHhhc-CCCcEEE
Q 017051 96 YRSGKIHHTVIGPLEHDTVYFYRCGR-----QGPEFEFKTPPA--QFPITFAVAGDLGQTGWTKSTLDHIGQ-CKYDVHL 167 (378)
Q Consensus 96 ~~~~~~h~~~l~~L~p~t~Y~Y~v~~-----~s~~~~F~t~p~--~~~~~f~~~gD~~~~~~~~~~~~~i~~-~~~d~vi 167 (378)
....+++++.++||+|+|+|+||+.. .+.+++|+|+|. ...+||+++||.+.......+++.+.+ .+|||+|
T Consensus 58 ~~~d~t~~v~v~gL~p~t~Y~Y~~~~~~~~~~s~~g~~rT~p~~~~~~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l 137 (453)
T PF09423_consen 58 AERDFTVKVDVTGLQPGTRYYYRFVVDGGGQTSPVGRFRTAPDGDPDPFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVL 137 (453)
T ss_dssp GGGTTEEEEEE-S--TT-EEEEEEEE--TTEE---EEEE--TT-----EEEEEE----CCC---HHHHHHTT-S--SEEE
T ss_pred cCCCeEeecccCCCCCCceEEEEEEEecCCCCCCceEEEcCCCCCCCceEEEEECCCCcccChHHHHHhhhccCCCcEEE
Confidence 46779999999999999999999875 267899999986 357999999999765445778888887 6999999
Q ss_pred eccccccccch--------------------hh-------hHHHH--HHhhHhhhhCCceeecCCCCccCCCCccc----
Q 017051 168 LPGDLSYADYM--------------------QH-------RWDTF--GELVQPLASARPWMVTQGNHEKESIPLIM---- 214 (378)
Q Consensus 168 ~~GDl~~~~~~--------------------~~-------~~~~~--~~~~~~l~~~~P~~~v~GNHD~~~~~~~~---- 214 (378)
|+||.+|.+.. .. .|..+ ...++.+.+++|+++++.+||+.++....
T Consensus 138 ~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~ 217 (453)
T PF09423_consen 138 HLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAEN 217 (453)
T ss_dssp E-S-SS----TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-ST
T ss_pred EeCCeeeccCCcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCcccc
Confidence 99999998752 00 11111 12456677789999999999996432200
Q ss_pred -------------chhhhchhcccCCCCC---CCCCCCceEEEEeCC-EEEEEEcCcCCCC-------------------
Q 017051 215 -------------DAFQSYNARWKMPFEE---SGSNSNLYYSFDVAG-AHLIMLGSYADYD------------------- 258 (378)
Q Consensus 215 -------------~~~~~~~~~~~~p~~~---~~~~~~~~ysf~~g~-v~fi~ldt~~~~~------------------- 258 (378)
.+...|... +|... .......|++|.+|+ +.|++||+.....
T Consensus 218 ~~~~~~~~~~~~~~a~~ay~e~--~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~ 295 (453)
T PF09423_consen 218 HQDTSGDFQDRRRAAYQAYFEY--QPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSR 295 (453)
T ss_dssp T---HHHHHHHHHHHHHHHHHH--S---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT-
T ss_pred ccccccchHHHHHHHHHHHHhh--cCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCcc
Confidence 111222222 23211 112346789999999 9999999953211
Q ss_pred --CcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCC-----------CCCCchHHHHHHHHHHHhcCCc--EEEec
Q 017051 259 --EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA-----------HQGEGDGMMAIMEPLLYAASVD--LVLAG 323 (378)
Q Consensus 259 --~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~-----------~~~~~~~~~~~l~~l~~~~~vd--lvl~G 323 (378)
.+.+|++||++.|++. .++|+|++.-.|+...... .++.....++.|.++|.+.++. ++|+|
T Consensus 296 ~mLG~~Q~~wL~~~L~~s---~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSG 372 (453)
T PF09423_consen 296 TMLGEEQWDWLEDWLASS---QATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSG 372 (453)
T ss_dssp -SS-HHHHHHHHHHHHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-
T ss_pred CcCCHHHHHHHHHHHhcC---CCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEec
Confidence 2689999999999986 4789999988876443211 1112235789999999988764 88999
Q ss_pred Cccccceee
Q 017051 324 HVHAYERSI 332 (378)
Q Consensus 324 H~H~y~r~~ 332 (378)
+.|......
T Consensus 373 DvH~~~~~~ 381 (453)
T PF09423_consen 373 DVHASAASR 381 (453)
T ss_dssp SSSSEEEEE
T ss_pred Ccchheeee
Confidence 999876554
No 10
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.6e-24 Score=183.82 Aligned_cols=208 Identities=23% Similarity=0.422 Sum_probs=138.2
Q ss_pred EECCCC-CCCeEEEEEcccCCCCC-hHHH-HHHh----hcCCCcEEEeccccccccchhhhHHH-HHHhhHhh----hhC
Q 017051 128 FKTPPA-QFPITFAVAGDLGQTGW-TKST-LDHI----GQCKYDVHLLPGDLSYADYMQHRWDT-FGELVQPL----ASA 195 (378)
Q Consensus 128 F~t~p~-~~~~~f~~~gD~~~~~~-~~~~-~~~i----~~~~~d~vi~~GDl~~~~~~~~~~~~-~~~~~~~l----~~~ 195 (378)
+.-|+. +++++|+++||+|.... .+.. ..++ ++.++||||-+||.+|.++...+.|. |...++.+ .-+
T Consensus 34 l~~p~~~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQ 113 (336)
T KOG2679|consen 34 LYDPAKSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQ 113 (336)
T ss_pred hcCCCCCCCceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccc
Confidence 444444 67899999999985443 2222 2222 36799999999999999887444332 11222222 113
Q ss_pred CceeecCCCCccCCCCcccch--hhhchhcccCCCCCCCCCCCceEE------EEeCCEEEEEEcCcC-------CCC--
Q 017051 196 RPWMVTQGNHEKESIPLIMDA--FQSYNARWKMPFEESGSNSNLYYS------FDVAGAHLIMLGSYA-------DYD-- 258 (378)
Q Consensus 196 ~P~~~v~GNHD~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~ys------f~~g~v~fi~ldt~~-------~~~-- 258 (378)
+||+.+.||||+.++...+-. +.....||..|. .||. +-.-++.++++|+.. ++.
T Consensus 114 kpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~r--------sf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v 185 (336)
T KOG2679|consen 114 KPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPR--------SFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGV 185 (336)
T ss_pred cchhhhccCccccCchhhhhhHHHHhhccceeccc--------HHhhcceeeeeeccccccchhhheecccccccccccC
Confidence 799999999999765443222 444555665553 1221 111134444444421 111
Q ss_pred -----CcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeec
Q 017051 259 -----EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIR 333 (378)
Q Consensus 259 -----~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~ 333 (378)
....++.||+..|+++ .++|+||++|||+.+.+ +.+....+.+.|.|+|++++||++++||+|+.|....
T Consensus 186 ~PR~~~~~~~l~~le~~L~~S---~a~wkiVvGHh~i~S~~--~HG~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~ 260 (336)
T KOG2679|consen 186 LPRVKYLRALLSWLEVALKAS---RAKWKIVVGHHPIKSAG--HHGPTKELEKQLLPILEANGVDLYINGHDHCLQHISS 260 (336)
T ss_pred ChHHHHHHHHHHHHHHHHHHh---hcceEEEecccceehhh--ccCChHHHHHHHHHHHHhcCCcEEEecchhhhhhccC
Confidence 1267889999999996 67899999999998765 3456667899999999999999999999999886542
Q ss_pred ccCCCcCCCccEEEEeCCCCC
Q 017051 334 VNNGKPDPCGAVYITIGDGGN 354 (378)
Q Consensus 334 ~~~~~~~~~g~~yiv~G~gG~ 354 (378)
. ..++-|+++|+|..
T Consensus 261 ~------e~~iqf~tSGagSk 275 (336)
T KOG2679|consen 261 P------ESGIQFVTSGAGSK 275 (336)
T ss_pred C------CCCeeEEeeCCccc
Confidence 1 35677888887754
No 11
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.91 E-value=2e-23 Score=184.38 Aligned_cols=188 Identities=19% Similarity=0.214 Sum_probs=130.5
Q ss_pred eEEEEEcccCCCCCh---------HHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhh-hCCceeecCCCCc
Q 017051 137 ITFAVAGDLGQTGWT---------KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLA-SARPWMVTQGNHE 206 (378)
Q Consensus 137 ~~f~~~gD~~~~~~~---------~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~-~~~P~~~v~GNHD 206 (378)
|||++++|+|..... +.+++.+.+.+||+||++||+++.+....+|+.+.+.++.+. ..+|+++++||||
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 689999999875331 123344456789999999999987664568998888888887 4599999999999
Q ss_pred cCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEe
Q 017051 207 KESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLL 286 (378)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~ 286 (378)
. ++.+|+ ....+|++||++.|++.+. +++|+++
T Consensus 81 ~----------------------------------------~~~ld~----~~~~~ql~WL~~~L~~~~~---~~~iv~~ 113 (214)
T cd07399 81 L----------------------------------------VLALEF----GPRDEVLQWANEVLKKHPD---RPAILTT 113 (214)
T ss_pred c----------------------------------------hhhCCC----CCCHHHHHHHHHHHHHCCC---CCEEEEe
Confidence 3 122222 1247999999999998632 3489999
Q ss_pred ccccccCCCCCCCC-----chHHHHHHHHHHHhc-CCcEEEecCccccceeecccCCCcCCCccEEEEeCCCCCCCCccc
Q 017051 287 HVPWYNSNEAHQGE-----GDGMMAIMEPLLYAA-SVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLAR 360 (378)
Q Consensus 287 H~P~~~~~~~~~~~-----~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~ 360 (378)
|+|++......... .....+.|.++++++ +|+++||||.|.+.+.... ++....++++-+....-. ..
T Consensus 114 H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~~--~~~~~g~~v~~~~~~~q~----~~ 187 (214)
T cd07399 114 HAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTLV--SVGDAGRTVHQMLADYQG----EP 187 (214)
T ss_pred cccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEEEc--ccCCCCCEeeEEeecccC----CC
Confidence 99998654321111 122456788999999 7999999999998877642 112223455433222211 11
Q ss_pred cccccccCceecccccC
Q 017051 361 KYVLTYRNIFELSNSNK 377 (378)
Q Consensus 361 ~~~~p~~~~~e~~~~~~ 377 (378)
...+|++|+++++.++.
T Consensus 188 ~~g~~~~r~~~f~~~~~ 204 (214)
T cd07399 188 NGGNGFLRLLEFDPDNN 204 (214)
T ss_pred CCCcceEEEEEEecCCC
Confidence 23579999999988764
No 12
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.91 E-value=4.5e-23 Score=189.49 Aligned_cols=220 Identities=19% Similarity=0.161 Sum_probs=140.7
Q ss_pred EECCCC-CCCeEEEEEcccCCCCC-------------hHHHHHHhhc--CCCcEEEeccccccccchhhhHHHHHHhhHh
Q 017051 128 FKTPPA-QFPITFAVAGDLGQTGW-------------TKSTLDHIGQ--CKYDVHLLPGDLSYADYMQHRWDTFGELVQP 191 (378)
Q Consensus 128 F~t~p~-~~~~~f~~~gD~~~~~~-------------~~~~~~~i~~--~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~ 191 (378)
.+++++ ..+++|++++|+|.... .+++++.+++ .+||+||++||+++.+. ...++.+.+.++.
T Consensus 5 ~~~~~~~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~-~~~~~~~~~~l~~ 83 (275)
T PRK11148 5 LTLPLAGEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS-SEAYQHFAEGIAP 83 (275)
T ss_pred cccccCCCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC-HHHHHHHHHHHhh
Confidence 556655 57899999999996321 1345556543 47999999999998543 3456666666665
Q ss_pred hhhCCceeecCCCCccCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCC----CCcHHHHHHH
Q 017051 192 LASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY----DEYSDQYRWL 267 (378)
Q Consensus 192 l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~----~~~~~Q~~WL 267 (378)
+ .+|++.++||||... .+..+.....+ ...++.+..++++||+||+.... ..+.+|++||
T Consensus 84 l--~~Pv~~v~GNHD~~~------~~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL 147 (275)
T PRK11148 84 L--RKPCVWLPGNHDFQP------AMYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEWL 147 (275)
T ss_pred c--CCcEEEeCCCCCChH------HHHHHHhhcCC--------CccceEEecCCEEEEEecCCCCCCcCCEeCHHHHHHH
Confidence 5 389999999999831 11111111111 12233344556999999995321 1357999999
Q ss_pred HHHhhhccCCCCCeEEEEeccccccCCCCCCC-CchHHHHHHHHHHHhc-CCcEEEecCccccceeecccCCCcCCCccE
Q 017051 268 KDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQG-EGDGMMAIMEPLLYAA-SVDLVLAGHVHAYERSIRVNNGKPDPCGAV 345 (378)
Q Consensus 268 ~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~-~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~ 345 (378)
+++|++... +..||++|||+......+.. ......+.|.++++++ +|+++||||+|...... ..|+.
T Consensus 148 ~~~L~~~~~---~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~--------~~gi~ 216 (275)
T PRK11148 148 ERKLADAPE---RHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLD--------WNGRR 216 (275)
T ss_pred HHHHhhCCC---CCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhce--------ECCEE
Confidence 999998743 23566677655443322111 1112457899999998 89999999999854322 25788
Q ss_pred EEEeCCCCCCCCc-ccc----ccccccCceecccc
Q 017051 346 YITIGDGGNKEGL-ARK----YVLTYRNIFELSNS 375 (378)
Q Consensus 346 yiv~G~gG~~~~~-~~~----~~~p~~~~~e~~~~ 375 (378)
++++++.+..-.. ... ...|+|+++++..+
T Consensus 217 ~~~~ps~~~q~~~~~~~~~~~~~~~g~~~~~l~~~ 251 (275)
T PRK11148 217 LLATPSTCVQFKPHCTNFTLDTVAPGWRELELHAD 251 (275)
T ss_pred EEEcCCCcCCcCCCCCccccccCCCcEEEEEEcCC
Confidence 8877776542111 111 23578999999644
No 13
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.90 E-value=1.1e-22 Score=184.65 Aligned_cols=185 Identities=17% Similarity=0.217 Sum_probs=123.6
Q ss_pred EEEEcccCCCCCh--------HHHHHHhhcCCCcEEEeccccccccc--------hhhhHHHHHHhhHhhhh--CCceee
Q 017051 139 FAVAGDLGQTGWT--------KSTLDHIGQCKYDVHLLPGDLSYADY--------MQHRWDTFGELVQPLAS--ARPWMV 200 (378)
Q Consensus 139 f~~~gD~~~~~~~--------~~~~~~i~~~~~d~vi~~GDl~~~~~--------~~~~~~~~~~~~~~l~~--~~P~~~ 200 (378)
|+.++|+|.+... ..+++.+++.+||+||++||+++... ...+|+.|.+.+..... ..|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 7899999976531 12345667889999999999997543 14567777776655433 489999
Q ss_pred cCCCCccCCCCcccchhhhchhcccCCCCCCCCCCCceEEE--EeCCEEEEEEcCcCC----------CCCcHHHHHHHH
Q 017051 201 TQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSF--DVAGAHLIMLGSYAD----------YDEYSDQYRWLK 268 (378)
Q Consensus 201 v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf--~~g~v~fi~ldt~~~----------~~~~~~Q~~WL~ 268 (378)
++||||..+..........|.+...... ....+|.+ ..|+++||+|||... .....+|++||+
T Consensus 82 v~GNHD~~~~~~~~~~~~~~~~y~~~~~-----~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~ 156 (256)
T cd07401 82 IRGNHDLFNIPSLDSENNYYRKYSATGR-----DGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLE 156 (256)
T ss_pred eCCCCCcCCCCCccchhhHHHHhheecC-----CCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHH
Confidence 9999999543221111122222111110 01223333 358999999999632 113489999999
Q ss_pred HHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecc
Q 017051 269 DDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRV 334 (378)
Q Consensus 269 ~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~ 334 (378)
+.|++... .+++||++|+|++...... . .....+.++|++++|+++||||.|.+++-.|+
T Consensus 157 ~~L~~~~~--~~~~IV~~HhP~~~~~~~~-~---~~~~~~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 157 KELEKSTN--SNYTIWFGHYPTSTIISPS-A---KSSSKFKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHhccc--CCeEEEEEcccchhccCCC-c---chhHHHHHHHHhcCCcEEEeCCccCCCcceee
Confidence 99998643 3579999999986532211 1 12233999999999999999999999985665
No 14
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2e-21 Score=180.68 Aligned_cols=279 Identities=24% Similarity=0.287 Sum_probs=186.5
Q ss_pred CC-ceEEEEecC-CCeEEEEEEcCC-C------CCCcEEEEeccCCCCCeeEEeeeeEEeeeeeccCeEEEEEECCCCCC
Q 017051 42 HP-QQVHISLAG-DSHMRVTWITDD-E------SSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHD 112 (378)
Q Consensus 42 ~p-~~v~l~~~~-~~~~~i~W~t~~-~------~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~l~~L~p~ 112 (378)
.| .+.-|+.++ ...-.|.|.--+ . +.+..+|++++++..+.+..++... .....+.+++.++||+|+
T Consensus 36 rpaF~~GVaSGDp~~~svviWTRl~P~p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~a----~p~~dhtv~v~~~gL~P~ 111 (522)
T COG3540 36 RPAFTHGVASGDPTATSVVIWTRLDPEPLNGGRPVPVIWEVSTDENFSNIVRKGTVIA----SPELDHTVHVDLRGLSPD 111 (522)
T ss_pred CCccccccccCCCCCCeEEEEEccCCccccCCCCcceEEEecCCccHHHHHhcCCccC----CcccCceEEEeccCCCCC
Confidence 45 455566666 334455665442 1 3456788888775444443333211 135678999999999999
Q ss_pred CEEEEEeCcc---CceeEEECCCC-CCCeEEEEEcccCCCCC---hHHHHHHhhcCCCcEEEeccccccccchhhh----
Q 017051 113 TVYFYRCGRQ---GPEFEFKTPPA-QFPITFAVAGDLGQTGW---TKSTLDHIGQCKYDVHLLPGDLSYADYMQHR---- 181 (378)
Q Consensus 113 t~Y~Y~v~~~---s~~~~F~t~p~-~~~~~f~~~gD~~~~~~---~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~---- 181 (378)
+.|+||+... +..++|||+|+ ...++++.++|.....+ .-.+.+.|.+.+|||+||+||.+|+.+....
T Consensus 112 ~~yfYRf~~~~~~spvGrtrTapa~~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~~ 191 (522)
T COG3540 112 QDYFYRFKAGDERSPVGRTRTAPAPGRAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPIPDEVSL 191 (522)
T ss_pred ceEEEEEeeCCccccccccccCCCCCCcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeeccCCccccccc
Confidence 9999998653 78899999998 56788888888744433 4578888999999999999999998765211
Q ss_pred ------------------HHHHH---------HhhHhhhhCCceeecCCCCccCCCCcc----------cc--------h
Q 017051 182 ------------------WDTFG---------ELVQPLASARPWMVTQGNHEKESIPLI----------MD--------A 216 (378)
Q Consensus 182 ------------------~~~~~---------~~~~~l~~~~P~~~v~GNHD~~~~~~~----------~~--------~ 216 (378)
.+.+. .-++...+..|+++.+.+||..++-.. .. .
T Consensus 192 ~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A 271 (522)
T COG3540 192 NSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFVLRAAAA 271 (522)
T ss_pred ccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHHHHHHHH
Confidence 12221 234556667999999999999643110 01 1
Q ss_pred hhhchhcccCCCCCCCC--CCCceEEEEeCC-EEEEEEcCcCCC------C----------------CcHHHHHHHHHHh
Q 017051 217 FQSYNARWKMPFEESGS--NSNLYYSFDVAG-AHLIMLGSYADY------D----------------EYSDQYRWLKDDL 271 (378)
Q Consensus 217 ~~~~~~~~~~p~~~~~~--~~~~~ysf~~g~-v~fi~ldt~~~~------~----------------~~~~Q~~WL~~~L 271 (378)
.+.|.+ .||...... ....|.+|.||+ +.|.+||+.... + .+..|.+||++.|
T Consensus 272 ~qAyyE--~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L 349 (522)
T COG3540 272 RQAYYE--HMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGL 349 (522)
T ss_pred HHHHHH--hCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhh
Confidence 123322 255432221 246899999998 689999985322 0 2689999999999
Q ss_pred hhccCCCCCeEEEEeccccccC----C---CC------CCCCchHHHHHHHHHHHhcCCc--EEEecCccccc
Q 017051 272 SKVDRKKTPWLLVLLHVPWYNS----N---EA------HQGEGDGMMAIMEPLLYAASVD--LVLAGHVHAYE 329 (378)
Q Consensus 272 ~~~~~~~~~~~iv~~H~P~~~~----~---~~------~~~~~~~~~~~l~~l~~~~~vd--lvl~GH~H~y~ 329 (378)
... ++.|+|+..-.|+-.. . .. .+.-....|+.|..+++..++. ++|+|.+|..-
T Consensus 350 ~~S---katWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~~w 419 (522)
T COG3540 350 GAS---KATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHYSW 419 (522)
T ss_pred hhc---chhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHHHH
Confidence 995 7789999888886211 1 00 0011124688999999999765 99999999643
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.87 E-value=2.7e-21 Score=179.89 Aligned_cols=217 Identities=20% Similarity=0.250 Sum_probs=137.3
Q ss_pred EEcccCCCCC---hHHHHHHhhcC--CCcEEEeccccccccchhh--------hHHHHHHhhHhhhhCCceeecCCCCcc
Q 017051 141 VAGDLGQTGW---TKSTLDHIGQC--KYDVHLLPGDLSYADYMQH--------RWDTFGELVQPLASARPWMVTQGNHEK 207 (378)
Q Consensus 141 ~~gD~~~~~~---~~~~~~~i~~~--~~d~vi~~GDl~~~~~~~~--------~~~~~~~~~~~l~~~~P~~~v~GNHD~ 207 (378)
-+|+.+.... .+.+++.+++. +|||||++||++..+.... .+..+.+.++.....+|+++++||||.
T Consensus 42 ~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~ 121 (296)
T cd00842 42 PWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDS 121 (296)
T ss_pred CCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCC
Confidence 3555553322 34566777665 9999999999998765422 134455556666667999999999999
Q ss_pred CCCCcc------cchhhhchhccc--CCCCC-CCCCCCceEEEE-eCCEEEEEEcCcCCC-----------CCcHHHHHH
Q 017051 208 ESIPLI------MDAFQSYNARWK--MPFEE-SGSNSNLYYSFD-VAGAHLIMLGSYADY-----------DEYSDQYRW 266 (378)
Q Consensus 208 ~~~~~~------~~~~~~~~~~~~--~p~~~-~~~~~~~~ysf~-~g~v~fi~ldt~~~~-----------~~~~~Q~~W 266 (378)
...... ...+..+...|. ++.+. .....+.||++. .+++++|+|||.... .....|++|
T Consensus 122 ~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~W 201 (296)
T cd00842 122 YPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQW 201 (296)
T ss_pred CcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHH
Confidence 532111 111222222221 22211 112246899998 889999999995321 124789999
Q ss_pred HHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcC--CcEEEecCccccceeecccCCC--cCCC
Q 017051 267 LKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAAS--VDLVLAGHVHAYERSIRVNNGK--PDPC 342 (378)
Q Consensus 267 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--vdlvl~GH~H~y~r~~~~~~~~--~~~~ 342 (378)
|+++|+++++++ ..++|++|+|+........ ....+.+.+++++|. |.++|+||+|..+... ++... .++.
T Consensus 202 L~~~L~~a~~~~-~~v~I~~HiPp~~~~~~~~---~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~-~~~~~~~~~~~ 276 (296)
T cd00842 202 LEDELQEAEQAG-EKVWIIGHIPPGVNSYDTL---ENWSERYLQIINRYSDTIAGQFFGHTHRDEFRV-FYDDNDTGEPI 276 (296)
T ss_pred HHHHHHHHHHCC-CeEEEEeccCCCCcccccc---hHHHHHHHHHHHHHHHhhheeeecccccceEEE-EeCCCCCCCce
Confidence 999999986533 3488999999976543211 245789999999997 7789999999977654 33322 2334
Q ss_pred ccEEEEeCCCCCCCCccccccccccC
Q 017051 343 GAVYITIGDGGNKEGLARKYVLTYRN 368 (378)
Q Consensus 343 g~~yiv~G~gG~~~~~~~~~~~p~~~ 368 (378)
++.++ + +.-+....++|.||
T Consensus 277 ~~~~~--~----psitp~~~~nP~~r 296 (296)
T cd00842 277 NVALI--A----PSVTPYSGNNPGFR 296 (296)
T ss_pred EEEEe--c----CccCcCCCCCCCCC
Confidence 45544 2 22223335677764
No 16
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.80 E-value=2.8e-18 Score=154.95 Aligned_cols=168 Identities=20% Similarity=0.258 Sum_probs=109.5
Q ss_pred HHHHHhh-cCCCcEEEeccccccccch--hhhHHH----HHHhhHhhhhCCceeecCCCCccCCCCcc-cchhhhchhcc
Q 017051 153 STLDHIG-QCKYDVHLLPGDLSYADYM--QHRWDT----FGELVQPLASARPWMVTQGNHEKESIPLI-MDAFQSYNARW 224 (378)
Q Consensus 153 ~~~~~i~-~~~~d~vi~~GDl~~~~~~--~~~~~~----~~~~~~~l~~~~P~~~v~GNHD~~~~~~~-~~~~~~~~~~~ 224 (378)
+.++.+. ..+||+||++||+++.+.. ..+|.. |.+.+.++...+|++.++||||+...... ......|.+.|
T Consensus 35 ~~~~~~~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~~F 114 (257)
T cd08163 35 RNWRYMQKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFEKYF 114 (257)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHHHHh
Confidence 3444443 4689999999999986543 344543 33333333234799999999998532211 12334555555
Q ss_pred cCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCC-----CCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCC
Q 017051 225 KMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY-----DEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQG 299 (378)
Q Consensus 225 ~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~-----~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~ 299 (378)
. ..++++++|+++||+||+.... .....|.+||++.|+.... ..+ +||++|+|+|.......+
T Consensus 115 g----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~p-~ILl~H~Plyr~~~~~cg 182 (257)
T cd08163 115 G----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVK-SKP-RILLTHVPLYRPPNTSCG 182 (257)
T ss_pred C----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCC-CCc-EEEEeccccccCCCCCCC
Confidence 2 3468899999999999995321 2346799999999887643 334 899999999865321111
Q ss_pred ------------Cch----H-HHHHHHHHHHhcCCcEEEecCccccceee
Q 017051 300 ------------EGD----G-MMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (378)
Q Consensus 300 ------------~~~----~-~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 332 (378)
.+. . ..+.-..+|++.++.+||+||+|.|-...
T Consensus 183 ~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~ 232 (257)
T cd08163 183 PLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVV 232 (257)
T ss_pred CccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeE
Confidence 000 0 12344477888899999999999986654
No 17
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.79 E-value=4.4e-19 Score=150.70 Aligned_cols=188 Identities=22% Similarity=0.175 Sum_probs=102.3
Q ss_pred eEEEEEcccCCCCChH-----HHHHHhhcCCCcEEEeccccccccchhhhHHHHH-HhhHhhhhCCceeecCCCCccCCC
Q 017051 137 ITFAVAGDLGQTGWTK-----STLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFG-ELVQPLASARPWMVTQGNHEKESI 210 (378)
Q Consensus 137 ~~f~~~gD~~~~~~~~-----~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~-~~~~~l~~~~P~~~v~GNHD~~~~ 210 (378)
+||+++||+|...... .........++|+||++||+++.+.....+.... .........+|+++++||||+...
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcccccccccccccccee
Confidence 6999999999875432 2333445889999999999999877644443322 223344556999999999999532
Q ss_pred Ccccchhhhchhccc-CCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHH---HHHHHHHHhhhccCCCCCeEEEEe
Q 017051 211 PLIMDAFQSYNARWK-MPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSD---QYRWLKDDLSKVDRKKTPWLLVLL 286 (378)
Q Consensus 211 ~~~~~~~~~~~~~~~-~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~---Q~~WL~~~L~~~~~~~~~~~iv~~ 286 (378)
... ........... ..........+.......................... +..|+...++. ...+++||++
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iv~~ 156 (200)
T PF00149_consen 81 NSF-YGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEA---KNDDPVIVFT 156 (200)
T ss_dssp HHH-HHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHE---EEESEEEEEE
T ss_pred ccc-cccccccccccccccccccccCcceeeecccccccccccccccccccccchhccccccccccc---ccccceeEEE
Confidence 110 00000000000 0000000000000111222222222222111111222 22333333333 2456899999
Q ss_pred ccccccCCCCCCC--CchHHHHHHHHHHHhcCCcEEEecCcccc
Q 017051 287 HVPWYNSNEAHQG--EGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (378)
Q Consensus 287 H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~vdlvl~GH~H~y 328 (378)
|+|++........ .....++.+..++++++|+++|+||+|.|
T Consensus 157 H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 157 HHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp SSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 9999876543211 11246789999999999999999999986
No 18
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.76 E-value=2.1e-17 Score=147.92 Aligned_cols=190 Identities=18% Similarity=0.224 Sum_probs=117.1
Q ss_pred EEEcccCCCC--------Ch---HHHHHHhhcC------CCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecC
Q 017051 140 AVAGDLGQTG--------WT---KSTLDHIGQC------KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQ 202 (378)
Q Consensus 140 ~~~gD~~~~~--------~~---~~~~~~i~~~------~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~ 202 (378)
.+++|+|... .. .+.++.+.+. +||+||++||+++.... .......+.++.+ ..|+++|+
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~-~~~~~~l~~l~~l--~~~v~~V~ 78 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKL-EEAKLDLAWIDAL--PGTKVLLK 78 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCCh-HHHHHHHHHHHhC--CCCeEEEe
Confidence 5789998762 11 2444444433 99999999999854332 2222222333332 25789999
Q ss_pred CCCccCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcC----CC-----------C--CcHHHHH
Q 017051 203 GNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYA----DY-----------D--EYSDQYR 265 (378)
Q Consensus 203 GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~----~~-----------~--~~~~Q~~ 265 (378)
||||+.. . ....+.+.+. .. +..-....++.++++.|++++... .+ . ....|++
T Consensus 79 GNHD~~~-~----~~~~~~~~l~--~~--~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (232)
T cd07393 79 GNHDYWW-G----SASKLRKALE--ES--RLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELE 149 (232)
T ss_pred CCccccC-C----CHHHHHHHHH--hc--CeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHH
Confidence 9999831 1 1122222111 00 000011344667889999986321 11 0 1256899
Q ss_pred HHHHHhhhccCCC-CCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCcc
Q 017051 266 WLKDDLSKVDRKK-TPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGA 344 (378)
Q Consensus 266 WL~~~L~~~~~~~-~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~ 344 (378)
||++.|+++.... ..++|+++|+|++.... ..+.+.+++++++++++|+||+|.+++..|+.. ..+|+
T Consensus 150 ~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~--------~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~---~~~gi 218 (232)
T cd07393 150 RLELSLKAAKKREKEKIKIVMLHYPPANENG--------DDSPISKLIEEYGVDICVYGHLHGVGRDRAING---ERGGI 218 (232)
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCcCCCC--------CHHHHHHHHHHcCCCEEEECCCCCCcccccccc---eECCE
Confidence 9999999864322 24699999999876432 125678889999999999999999988776531 12577
Q ss_pred EEEEeCCC
Q 017051 345 VYITIGDG 352 (378)
Q Consensus 345 ~yiv~G~g 352 (378)
.|.++.+|
T Consensus 219 ~~~~~~~~ 226 (232)
T cd07393 219 RYQLVSAD 226 (232)
T ss_pred EEEEEcch
Confidence 78777655
No 19
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.75 E-value=4.7e-17 Score=154.75 Aligned_cols=128 Identities=20% Similarity=0.287 Sum_probs=88.8
Q ss_pred CCceEEEE-eCCEEEEEEcCcCCC-----CCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCC-----CCchH
Q 017051 235 SNLYYSFD-VAGAHLIMLGSYADY-----DEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQ-----GEGDG 303 (378)
Q Consensus 235 ~~~~ysf~-~g~v~fi~ldt~~~~-----~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~-----~~~~~ 303 (378)
+..||+|+ .++++||+|||.... ....+|++||+++|++. +.+++||++|||++....... +....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a---~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRAS---SDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcC---CCCCEEEEECCCCcccccccccccccccccc
Confidence 46799999 899999999996421 23589999999999975 234699999999886543211 11112
Q ss_pred HHHHHHHHHHhc-CCcEEEecCccccceeecc-cCCCcCCCccEEEEeCCCCCCCCccccccccccCceecc
Q 017051 304 MMAIMEPLLYAA-SVDLVLAGHVHAYERSIRV-NNGKPDPCGAVYITIGDGGNKEGLARKYVLTYRNIFELS 373 (378)
Q Consensus 304 ~~~~l~~l~~~~-~vdlvl~GH~H~y~r~~~~-~~~~~~~~g~~yiv~G~gG~~~~~~~~~~~p~~~~~e~~ 373 (378)
..++|.++|++| +|.++||||.|......-. .++.....|.+.|.+++-=. | +-++|+|||-
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvd-------f-Pq~~Ri~Ei~ 430 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHID-------F-PQQGRIIELA 430 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEecccccc-------C-CCCceEEEEE
Confidence 357899999999 7999999999987644311 11111124777787774321 1 2477899983
No 20
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.75 E-value=2.8e-17 Score=143.91 Aligned_cols=161 Identities=22% Similarity=0.331 Sum_probs=105.5
Q ss_pred CeEEEEEcccCCCCCh------------HHHHHH-hhcCCCcEEEeccccccccchhh-hHHHHHHhhHhhhh-CCceee
Q 017051 136 PITFAVAGDLGQTGWT------------KSTLDH-IGQCKYDVHLLPGDLSYADYMQH-RWDTFGELVQPLAS-ARPWMV 200 (378)
Q Consensus 136 ~~~f~~~gD~~~~~~~------------~~~~~~-i~~~~~d~vi~~GDl~~~~~~~~-~~~~~~~~~~~l~~-~~P~~~ 200 (378)
.+||++++|+|..... .+.+.+ +...+||+||++||+++...... .+..+.+.++.+.. .+|+++
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~ 81 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAA 81 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEE
Confidence 6899999999975431 122332 34679999999999998665432 34555556666544 499999
Q ss_pred cCCCCccCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhcc--CCC
Q 017051 201 TQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVD--RKK 278 (378)
Q Consensus 201 v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~--~~~ 278 (378)
++||||.. .+ ....|++||+++|++.. +..
T Consensus 82 ~~GNHD~~-----------------------------------------------g~-l~~~ql~wL~~~l~~~~~~~~~ 113 (199)
T cd07383 82 TFGNHDGY-----------------------------------------------DW-IRPSQIEWFKETSAALKKKYGK 113 (199)
T ss_pred ECccCCCC-----------------------------------------------CC-CCHHHHHHHHHHHHHHhhccCC
Confidence 99999920 11 23689999999999863 123
Q ss_pred CCeEEEEeccccccCCCCCC---------CC---chHHHHHHHH-HHHhcCCcEEEecCccccceeecccCCCcCCCccE
Q 017051 279 TPWLLVLLHVPWYNSNEAHQ---------GE---GDGMMAIMEP-LLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAV 345 (378)
Q Consensus 279 ~~~~iv~~H~P~~~~~~~~~---------~~---~~~~~~~l~~-l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~ 345 (378)
..+.++++|+|+......+. .+ .......+.. +.+..+|+++|+||+|.++.... .+.+
T Consensus 114 ~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~~--------~~~i 185 (199)
T cd07383 114 PIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCGR--------YNGI 185 (199)
T ss_pred CCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceecc--------cCCE
Confidence 34699999999865322111 01 0012234444 44667899999999999876553 2444
Q ss_pred EEEeCCC
Q 017051 346 YITIGDG 352 (378)
Q Consensus 346 yiv~G~g 352 (378)
.+..|..
T Consensus 186 ~l~~g~~ 192 (199)
T cd07383 186 WLCYGRG 192 (199)
T ss_pred EEeCCCC
Confidence 5666654
No 21
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.74 E-value=8e-17 Score=139.49 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=102.9
Q ss_pred EEEEcccCCCCChHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccchhh
Q 017051 139 FAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQ 218 (378)
Q Consensus 139 f~~~gD~~~~~~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~ 218 (378)
++++||+|........ ..+.+.++|+||++||+++.+.. .....+ +.++.+ .+|+++++||||.... ..
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~~~~-~~~~~~-~~l~~~--~~p~~~v~GNHD~~~~------~~ 69 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNFGGK-EAAVEI-NLLLAI--GVPVLAVPGNCDTPEI------LG 69 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCcCCH-HHHHHH-HHHHhc--CCCEEEEcCCCCCHHH------HH
Confidence 5789999975422112 34567789999999999976543 222222 233222 3899999999998311 11
Q ss_pred hchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCC------CCCcHHHHHHHHHHhhhccCCCCCeEEEEecccccc
Q 017051 219 SYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYAD------YDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYN 292 (378)
Q Consensus 219 ~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~------~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~ 292 (378)
...... .. .....+.+++++|+++++... .....+|++|+ +.+... ..+.+|+++|+|++.
T Consensus 70 ~~~~~~-~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~~---~~~~~ilv~H~pp~~ 136 (188)
T cd07392 70 LLTSAG-LN--------LHGKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNNL---LAKNLILVTHAPPYG 136 (188)
T ss_pred hhhcCc-Ee--------cCCCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhcc---CCCCeEEEECCCCcC
Confidence 110000 00 111345678899999987421 12246888998 444433 223589999999976
Q ss_pred C-CCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccc
Q 017051 293 S-NEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (378)
Q Consensus 293 ~-~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 329 (378)
. ............+.+.+++++++++++||||.|...
T Consensus 137 ~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 137 TAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred CcccccCCCCccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 3 111111101234788899999999999999999853
No 22
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.74 E-value=5.3e-17 Score=144.73 Aligned_cols=204 Identities=20% Similarity=0.134 Sum_probs=125.9
Q ss_pred CeEEEEEcccCCCCC-----hHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCC
Q 017051 136 PITFAVAGDLGQTGW-----TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESI 210 (378)
Q Consensus 136 ~~~f~~~gD~~~~~~-----~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~ 210 (378)
++||++++|+|.... .+++++.+.+.+||+|+++||+++...... +.+.+.++.+....|+++++||||+...
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~--~~~~~~l~~l~~~~~v~~v~GNHD~~~~ 78 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVL--ELLLELLKKLKAPLGVYAVLGNHDYYSG 78 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhh--HHHHHHHhccCCCCCEEEECCCcccccC
Confidence 479999999997643 245666677889999999999998654322 3455566666566899999999999543
Q ss_pred CcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEecccc
Q 017051 211 PLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPW 290 (378)
Q Consensus 211 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~ 290 (378)
.. ..+....+...... ..+....++.++..+..+.... .....+++.+.+++.+. ..+.|++.|.|.
T Consensus 79 ~~--~~~~~~l~~~~v~~-----L~~~~~~~~~~~~~i~i~G~~~----~~~~~~~~~~~~~~~~~--~~~~I~l~H~P~ 145 (223)
T cd07385 79 DE--ENWIEALESAGITV-----LRNESVEISVGGATIGIAGVDD----GLGRRPDLEKALKGLDE--DDPNILLAHQPD 145 (223)
T ss_pred ch--HHHHHHHHHcCCEE-----eecCcEEeccCCeEEEEEeccC----ccccCCCHHHHHhCCCC--CCCEEEEecCCC
Confidence 21 11011111111110 1234455566654444332111 11223456666665432 346899999984
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCC--------------cCCCccEEEEeCCCCCCC
Q 017051 291 YNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGK--------------PDPCGAVYITIGDGGNKE 356 (378)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~--------------~~~~g~~yiv~G~gG~~~ 356 (378)
+.. .+.+.++|++++||+|..|...|..... ...+..+||..|.|.. .
T Consensus 146 ~~~-----------------~~~~~~~dl~l~GHtHggqi~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~Vs~G~G~~-~ 207 (223)
T cd07385 146 TAE-----------------EAAAWGVDLQLSGHTHGGQIRLPGIGPLVLSKLARPYDYGLYRKGGSQLYVSRGLGTW-G 207 (223)
T ss_pred hhH-----------------HhcccCccEEEeccCCCCEEeccccccccchhhcCcccceEEEECCEEEEEcCCccCC-C
Confidence 321 1256799999999999998776544321 1123567777776654 3
Q ss_pred CccccccccccCceec
Q 017051 357 GLARKYVLTYRNIFEL 372 (378)
Q Consensus 357 ~~~~~~~~p~~~~~e~ 372 (378)
-..+.+.+|+..+++|
T Consensus 208 ~~~R~~~~pEi~~i~l 223 (223)
T cd07385 208 PPLRLGCPPEITLITL 223 (223)
T ss_pred CchhcCCCCcEEEEEC
Confidence 3467778999988875
No 23
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.72 E-value=3.2e-16 Score=143.45 Aligned_cols=204 Identities=20% Similarity=0.160 Sum_probs=123.7
Q ss_pred CCCCeEEEEEcccCCCCC-----hHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCcc
Q 017051 133 AQFPITFAVAGDLGQTGW-----TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (378)
Q Consensus 133 ~~~~~~f~~~gD~~~~~~-----~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 207 (378)
..+++||+++||+|.... .+++++.+++.+||+|+++||+++.+.. ..++.+.+.++.+.+..|+++|+||||+
T Consensus 46 ~~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~-~~~~~~~~~L~~L~~~~pv~~V~GNHD~ 124 (271)
T PRK11340 46 NAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMP-LNFSAFSDVLSPLAECAPTFACFGNHDR 124 (271)
T ss_pred CCCCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCcc-ccHHHHHHHHHHHhhcCCEEEecCCCCc
Confidence 356799999999997632 2345566678899999999999973221 2345566677777666899999999998
Q ss_pred CCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCC--EEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEE
Q 017051 208 ESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAG--AHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVL 285 (378)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~--v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~ 285 (378)
..............+.-.. .-..+....+..++ +.++++|....... . ..+.+++ + ..+|++
T Consensus 125 ~~~~~~~~~~~~~l~~~gi-----~lL~n~~~~i~~~~~~i~i~G~~d~~~~~~---~---~~~~~~~----~-~~~IlL 188 (271)
T PRK11340 125 PVGTEKNHLIGETLKSAGI-----TVLFNQATVIATPNRQFELVGTGDLWAGQC---K---PPPASEA----N-LPRLVL 188 (271)
T ss_pred ccCccchHHHHHHHHhcCc-----EEeeCCeEEEeeCCcEEEEEEecchhccCC---C---hhHhcCC----C-CCeEEE
Confidence 4221100011111111100 01123444455543 66677764211110 0 1111221 2 248999
Q ss_pred eccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccC-------------CCcC-CCccEEEEeCC
Q 017051 286 LHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNN-------------GKPD-PCGAVYITIGD 351 (378)
Q Consensus 286 ~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~-------------~~~~-~~g~~yiv~G~ 351 (378)
.|.|-+- +.+.+.++|++||||+|..|...|..+ |.-. .+..+||..|-
T Consensus 189 ~H~P~~~-----------------~~~~~~~~dL~lsGHTHGGQi~lP~~~~~~~~~~~~~~~~G~~~~~~~~l~Vs~G~ 251 (271)
T PRK11340 189 AHNPDSK-----------------EVMRDEPWDLMLCGHTHGGQLRVPLVGEPFAPVEDKRYVAGLNAFGERQIYTTRGV 251 (271)
T ss_pred EcCCChh-----------------HhhccCCCCEEEeccccCCeEEccccCccccccccCcccCCcEEeCCcEEEEeCCc
Confidence 9999431 124567899999999999887766421 1111 23457777777
Q ss_pred CCCCCCccccccccccCceec
Q 017051 352 GGNKEGLARKYVLTYRNIFEL 372 (378)
Q Consensus 352 gG~~~~~~~~~~~p~~~~~e~ 372 (378)
|. . ...+.+.+|++.+++|
T Consensus 252 G~-~-~p~R~~~~pEi~~i~l 270 (271)
T PRK11340 252 GS-L-YGLRLNCRPEVTMLEL 270 (271)
T ss_pred cC-C-cCCcccCCCeEEEEEe
Confidence 74 3 5678889999999886
No 24
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.71 E-value=1.9e-16 Score=142.62 Aligned_cols=176 Identities=18% Similarity=0.112 Sum_probs=107.4
Q ss_pred EEEEEcccCCCCCh-------HHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCC
Q 017051 138 TFAVAGDLGQTGWT-------KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESI 210 (378)
Q Consensus 138 ~f~~~gD~~~~~~~-------~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~ 210 (378)
||++++|+|..... +.+++.+.+.++|+||++||++... .....+.+.+..+ ..+|++.++||||+...
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~---~~~~~~~~~l~~~-~~~pv~~v~GNHD~~~~ 76 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDF---QRSLPFIEKLQEL-KGIKVTFNAGNHDMLKD 76 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccch---hhHHHHHHHHHHh-cCCcEEEECCCCCCCCC
Confidence 58999999964211 2355666678899999999999642 1122233333332 34899999999998411
Q ss_pred CcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCC--------------------------C-----C
Q 017051 211 PLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADY--------------------------D-----E 259 (378)
Q Consensus 211 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~--------------------------~-----~ 259 (378)
.. ...+.+.+ .+ ....+.++.+..++++|++++.+.++ . .
T Consensus 77 ~~----~~~~~~~~-~~----~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 147 (239)
T TIGR03729 77 LT----YEEIESND-SP----LYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPER 147 (239)
T ss_pred CC----HHHHHhcc-ch----hhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHHH
Confidence 11 11121111 00 00112333344467888888843221 0 1
Q ss_pred cHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCC------CCCCC-c-hHHHHHHHHHHHhcCCcEEEecCccccc
Q 017051 260 YSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNE------AHQGE-G-DGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (378)
Q Consensus 260 ~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~------~~~~~-~-~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 329 (378)
...|++||++.|++... +.+|+++|+|+..... ..+.. . ......+.+++++++++++||||.|.-.
T Consensus 148 ~~~~l~~l~~~l~~~~~---~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 148 TAIVLKQLKKQLNQLDN---KQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHHHHHHHHHHhcCC---CCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCC
Confidence 26788999999988743 2389999999854211 11111 0 1124789999999999999999999864
No 25
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.70 E-value=1.4e-15 Score=133.85 Aligned_cols=172 Identities=13% Similarity=0.088 Sum_probs=104.3
Q ss_pred CeEEEEEcccCCCCC-hHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhh-CCceeecCCCCccCCCCcc
Q 017051 136 PITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS-ARPWMVTQGNHEKESIPLI 213 (378)
Q Consensus 136 ~~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~-~~P~~~v~GNHD~~~~~~~ 213 (378)
..|++++||+|.+.. .+++++.+++.++|+||++||+++.+....... ..++.+.. ..|+++++||||.. ..
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~---~~l~~l~~l~~pv~~V~GNhD~~-v~-- 77 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYA---AFFRILGEAHLPTFYVPGPQDAP-LW-- 77 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHH---HHHHHHHhcCCceEEEcCCCChH-HH--
Confidence 568999999996532 234555555678999999999997552222233 33444433 27999999999973 10
Q ss_pred cchhh-hchhcccCCCCCCCCCCCceEEEEe-CCEEEEEEcCcCCC--CCcHHHH----HHHHH----HhhhccCCCCCe
Q 017051 214 MDAFQ-SYNARWKMPFEESGSNSNLYYSFDV-AGAHLIMLGSYADY--DEYSDQY----RWLKD----DLSKVDRKKTPW 281 (378)
Q Consensus 214 ~~~~~-~~~~~~~~p~~~~~~~~~~~ysf~~-g~v~fi~ldt~~~~--~~~~~Q~----~WL~~----~L~~~~~~~~~~ 281 (378)
.... .|.+....|... ...+. ...+ |+++|++++....+ ...+++. .|+.+ .+.+. ..+.
T Consensus 78 -~~l~~~~~~~~~~p~~~--~lh~~--~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~~---~~~~ 149 (224)
T cd07388 78 -EYLREAYNAELVHPEIR--NVHET--FAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWEL---KDYR 149 (224)
T ss_pred -HHHHHHhcccccCccce--ecCCC--eEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHhC---CCCC
Confidence 0111 111111112100 01122 2344 56999999865433 2234442 56433 33332 2235
Q ss_pred EEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCcc
Q 017051 282 LLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVH 326 (378)
Q Consensus 282 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H 326 (378)
.|+++|+||+.....+ .....+.++++++++.+++|||.|
T Consensus 150 ~VLv~H~PP~g~g~~h-----~GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 150 KVFLFHTPPYHKGLNE-----QGSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred eEEEECCCCCCCCCCc-----cCHHHHHHHHHHhCCCEEEEcCCc
Confidence 8999999999874322 245889999999999999999999
No 26
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.67 E-value=2.2e-15 Score=139.97 Aligned_cols=179 Identities=23% Similarity=0.303 Sum_probs=118.2
Q ss_pred eEEEEEcccCCC--CC-h----HHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCC
Q 017051 137 ITFAVAGDLGQT--GW-T----KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKES 209 (378)
Q Consensus 137 ~~f~~~gD~~~~--~~-~----~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~ 209 (378)
++|+.++|+|.. .. . .++++.++..+||+||++||+++. +....++.+.+.++......|++.+|||||...
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~-~~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~ 79 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTND-GEPEEYRRLKELLARLELPAPVIVVPGNHDARV 79 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCC-CCHHHHHHHHHHHhhccCCCceEeeCCCCcCCc
Confidence 489999999987 22 2 345567778899999999999987 334556666666664444589999999999853
Q ss_pred CCcccchhhhchhcccCCCCCCCCCCCceEEEEe-CCEEEEEEcCcCCC----CCcHHHHHHHHHHhhhccCCCCCeEEE
Q 017051 210 IPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDV-AGAHLIMLGSYADY----DEYSDQYRWLKDDLSKVDRKKTPWLLV 284 (378)
Q Consensus 210 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~-g~v~fi~ldt~~~~----~~~~~Q~~WL~~~L~~~~~~~~~~~iv 284 (378)
. ....+...+.... ..+..... ++++++.+|+.... ..+..|++||++.|++........+|+
T Consensus 80 ~-----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~ 147 (301)
T COG1409 80 V-----NGEAFSDQFFNRY-------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVVV 147 (301)
T ss_pred h-----HHHHhhhhhcccC-------cceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccccCceEEE
Confidence 2 1222222221110 11111112 67899999996432 245899999999999875431123577
Q ss_pred EeccccccCCCCCCCCchHHHHHHHHHHHhcC--CcEEEecCcccc
Q 017051 285 LLHVPWYNSNEAHQGEGDGMMAIMEPLLYAAS--VDLVLAGHVHAY 328 (378)
Q Consensus 285 ~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--vdlvl~GH~H~y 328 (378)
+.|+|+.................+..++..++ ++++|+||.|..
T Consensus 148 ~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 148 LHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred ecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 77777665444322222233467778888888 999999999976
No 27
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.66 E-value=1.7e-15 Score=125.57 Aligned_cols=132 Identities=27% Similarity=0.303 Sum_probs=95.4
Q ss_pred EEEEcccCCCCChH-----------HHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhC-CceeecCCCCc
Q 017051 139 FAVAGDLGQTGWTK-----------STLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA-RPWMVTQGNHE 206 (378)
Q Consensus 139 f~~~gD~~~~~~~~-----------~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~-~P~~~v~GNHD 206 (378)
|+.++|+|.+.... .+++.+...++|+|+++||+++.+. ..+|+.+.+.++.+... +|++.++||||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~-~~~~~~~~~~~~~l~~~~~~~~~v~GNHD 79 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGL-PEEFEEAREFLDALPAPLEPVLVVPGNHD 79 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCC-HHHHHHHHHHHHHccccCCcEEEeCCCCe
Confidence 57899999765321 1344556789999999999998655 35677777777777654 69999999999
Q ss_pred cCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEe
Q 017051 207 KESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLL 286 (378)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~ 286 (378)
. |+++
T Consensus 80 ~---------------------------------------------------------------------------iv~~ 84 (144)
T cd07400 80 V---------------------------------------------------------------------------IVVL 84 (144)
T ss_pred E---------------------------------------------------------------------------EEEe
Confidence 7 8999
Q ss_pred ccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEeCC
Q 017051 287 HVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGD 351 (378)
Q Consensus 287 H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~ 351 (378)
|+|++.......... ...+.+.++++++++++++|||+|...... .. ....+++++.+|+
T Consensus 85 Hhp~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~-~~---~~~~~~~~~~aGs 144 (144)
T cd07400 85 HHPLVPPPGSGRERL-LDAGDALKLLAEAGVDLVLHGHKHVPYVGN-IS---NAGGGLVVIGAGT 144 (144)
T ss_pred cCCCCCCCccccccC-CCHHHHHHHHHHcCCCEEEECCCCCcCeee-cc---CCCCCEEEEecCC
Confidence 999977544221111 145789999999999999999999865433 11 1234677777764
No 28
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.64 E-value=1.4e-14 Score=136.49 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=80.5
Q ss_pred CceEEEE-eCCE--EEEEEcCcCC---------C--CCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCC----C
Q 017051 236 NLYYSFD-VAGA--HLIMLGSYAD---------Y--DEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA----H 297 (378)
Q Consensus 236 ~~~ysf~-~g~v--~fi~ldt~~~---------~--~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~----~ 297 (378)
..||+|+ .|++ ++|+||+... + ....+|++||+++|+.+.. +.+++|+++|+|+.+.... +
T Consensus 292 ~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a-~~p~VVV~hHpPi~t~gi~~md~w 370 (492)
T TIGR03768 292 FACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQA-DGQLMIIAAHIPIAVSPIGSEMEW 370 (492)
T ss_pred cceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcC-CCceEEEEeCCCcccCCccchhhh
Confidence 4599999 5855 9999998531 1 1358999999999999864 4466788888887652211 1
Q ss_pred C---------CCchHHHHHHHHHHHhc-CCcEEEecCcccccee-ecccCCCcCCCccEEEEeCCCCCCCCccccccccc
Q 017051 298 Q---------GEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYERS-IRVNNGKPDPCGAVYITIGDGGNKEGLARKYVLTY 366 (378)
Q Consensus 298 ~---------~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~r~-~~~~~~~~~~~g~~yiv~G~gG~~~~~~~~~~~p~ 366 (378)
. ..+.....+|..+|.+| +|.++||||.|..... ++-..+.....|-+.|.+.+ -.-.+.+
T Consensus 371 ~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~v~a~~~p~~~~pe~gFWeveTaS--------l~DfPQq 442 (492)
T TIGR03768 371 WLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNTVKAFPSPDPARPEYGFWQVETAS--------LRDFPQQ 442 (492)
T ss_pred ccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccccccccCCCCCCCCcCceEEEeehh--------hccchhh
Confidence 1 00111124899999999 5888999999964322 11111111124666665542 1123458
Q ss_pred cCceec
Q 017051 367 RNIFEL 372 (378)
Q Consensus 367 ~~~~e~ 372 (378)
+|+|||
T Consensus 443 ~R~~Ei 448 (492)
T TIGR03768 443 FRTFEI 448 (492)
T ss_pred ceEEEE
Confidence 899998
No 29
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.62 E-value=4.8e-14 Score=126.73 Aligned_cols=231 Identities=22% Similarity=0.270 Sum_probs=135.1
Q ss_pred CCCeEEEEEcccCCCCC--------------------hHHHHHHh-hcCCCcEEEeccccccccchhhhHHHHHHhhHhh
Q 017051 134 QFPITFAVAGDLGQTGW--------------------TKSTLDHI-GQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPL 192 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~--------------------~~~~~~~i-~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l 192 (378)
.++||++.++|+|.+.. +...++++ +.++||||+++||+++.....+.-..++..+++.
T Consensus 51 ~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~ 130 (379)
T KOG1432|consen 51 DGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPA 130 (379)
T ss_pred CCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhhhH
Confidence 56899999999987532 11344444 5789999999999998755555445566777776
Q ss_pred hh-CCceeecCCCCccCCCCcccchhhhchhcccCCCCCCC--CCCCceE-EEEeCC------------------EEEEE
Q 017051 193 AS-ARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESG--SNSNLYY-SFDVAG------------------AHLIM 250 (378)
Q Consensus 193 ~~-~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~y-sf~~g~------------------v~fi~ 250 (378)
.. .|||.++.||||-.+... ......+.. .+|..-+. +....-| -..+|+ ..++.
T Consensus 131 I~~~IPwA~~lGNHDdes~lt-r~ql~~~i~--~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyf 207 (379)
T KOG1432|consen 131 IDRKIPWAAVLGNHDDESDLT-RLQLMKFIS--KLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYF 207 (379)
T ss_pred hhcCCCeEEEecccccccccC-HHHHHHHHh--cCCCccccCCCcccceeeeecccceEEEeccCCCcccccCceeeEEE
Confidence 44 599999999999964321 111111211 12221000 0011111 111111 23445
Q ss_pred EcCcC---------CCC-CcHHHHHHHHHHhhhc---cCCCCC-eEEEEeccccc--cCCCC---CCC---C---chHHH
Q 017051 251 LGSYA---------DYD-EYSDQYRWLKDDLSKV---DRKKTP-WLLVLLHVPWY--NSNEA---HQG---E---GDGMM 305 (378)
Q Consensus 251 ldt~~---------~~~-~~~~Q~~WL~~~L~~~---~~~~~~-~~iv~~H~P~~--~~~~~---~~~---~---~~~~~ 305 (378)
||+.. .|+ ....|.+||+..-.+- ..+-.| --.++.|.|+- ..-.. ..+ + .....
T Consensus 208 ld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~ 287 (379)
T KOG1432|consen 208 LDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHN 287 (379)
T ss_pred EecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceeeccccccccc
Confidence 55521 111 2478999998887331 111122 36889999962 21111 000 0 11233
Q ss_pred HHHHHHHH-hcCCcEEEecCccccceeecccCCCcCCCccEEEEeCCCCCCCCccccccccccCceeccc
Q 017051 306 AIMEPLLY-AASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYVLTYRNIFELSN 374 (378)
Q Consensus 306 ~~l~~l~~-~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~~~~~p~~~~~e~~~ 374 (378)
..+...|. ..+|+.|+|||+|...--.+. ++.+++.=|+|+...+.....-.++.|+||++.
T Consensus 288 sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~-------k~~~wlCygGgaGyggYg~~gw~Rr~Rv~e~d~ 350 (379)
T KOG1432|consen 288 SGFLTTLVNRGNVKGVFCGHDHVNDFCGEL-------KGELWLCYGGGAGYGGYGIGGWERRARVFELDL 350 (379)
T ss_pred cHHHHHHHhccCcceEEeccccccceeccc-------CCeEEEEecCCCccCCcCcCCcccceEEEEccc
Confidence 56666666 779999999999997766543 355778777776665555344578899999975
No 30
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.61 E-value=7e-15 Score=124.90 Aligned_cols=143 Identities=22% Similarity=0.207 Sum_probs=88.5
Q ss_pred EEEEcccCCCCChHH-HH-HHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccch
Q 017051 139 FAVAGDLGQTGWTKS-TL-DHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDA 216 (378)
Q Consensus 139 f~~~gD~~~~~~~~~-~~-~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~ 216 (378)
|+++||+|.+..... .+ +.+...++|+|+++||+++.... ..+.. .........|+++++||||+.
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~-~~~~~---~~~~~~~~~~v~~v~GNHD~~-------- 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDA-PRFAP---LLLALKGFEPVIYVPGNHEFY-------- 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcch-HHHHH---HHHhhcCCccEEEeCCCcceE--------
Confidence 578999997643222 22 33456789999999999975432 22221 222333458999999999992
Q ss_pred hhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCC-cHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCC
Q 017051 217 FQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDE-YSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNE 295 (378)
Q Consensus 217 ~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~-~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~ 295 (378)
++|++..-+.++.. ..++.+|+.++++ +.+||++|+|+.....
T Consensus 69 -----------------------------~~~~G~~~w~~~~~~~~~~~~~~~~d~~-------~~~vv~~HhpP~~~~~ 112 (166)
T cd07404 69 -----------------------------VRIIGTTLWSDISLFGEAAARMRMNDFR-------GKTVVVTHHAPSPLSL 112 (166)
T ss_pred -----------------------------EEEEeeecccccCccchHHHHhCCCCCC-------CCEEEEeCCCCCcccc
Confidence 22333222222221 1234455444443 2389999999987543
Q ss_pred CCC---C-CchHHHHHHHHHHHhcCCcEEEecCccccc
Q 017051 296 AHQ---G-EGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (378)
Q Consensus 296 ~~~---~-~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 329 (378)
... + .....++.+.+++++.+|++++|||+|...
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~ 150 (166)
T cd07404 113 APQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNF 150 (166)
T ss_pred CccccCCCcchhhhhccHhHHhhcCCCEEEECCccccc
Confidence 221 1 112345668888899999999999999864
No 31
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.59 E-value=1.5e-14 Score=128.85 Aligned_cols=186 Identities=17% Similarity=0.140 Sum_probs=105.9
Q ss_pred EEEEEcccCCCCCh----------------HHHHHHhhcCCCcEEEeccccccccch-hhhHHHHHHhhHhhh-hCCcee
Q 017051 138 TFAVAGDLGQTGWT----------------KSTLDHIGQCKYDVHLLPGDLSYADYM-QHRWDTFGELVQPLA-SARPWM 199 (378)
Q Consensus 138 ~f~~~gD~~~~~~~----------------~~~~~~i~~~~~d~vi~~GDl~~~~~~-~~~~~~~~~~~~~l~-~~~P~~ 199 (378)
||++++|+|.+... +++++.+.+.+||+||++||+++.... ...+..+.+.++.+. ..+|++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 68999999976421 334445567899999999999976542 334566666776665 358999
Q ss_pred ecCCCCccCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCC
Q 017051 200 VTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKT 279 (378)
Q Consensus 200 ~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~ 279 (378)
+++||||.............+....... ............+...++.|++++..... ....+.++++..+.... ..
T Consensus 81 ~~~GNHD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~g~~~~~~~-~~~~~~~~~~~~~~~~~--~~ 156 (223)
T cd00840 81 IIAGNHDSPSRLGALSPLLALSGLHLVG-VEEDVLTPLLLPKGGTGVAIYGLPYLRRS-RLRDLLADAELRPRPLD--PD 156 (223)
T ss_pred EecCCCCCccccccccchHhhCcEEEEc-ccCcceeEEEeccCCeEEEEEECCCCCHH-HHHHHHHHHHHHhhccC--CC
Confidence 9999999953221100010010000000 00000011222334456888888754221 11334444444544443 33
Q ss_pred CeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCcccccee
Q 017051 280 PWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERS 331 (378)
Q Consensus 280 ~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~ 331 (378)
...|++.|.|+.......... .......+...++|++++||.|..+..
T Consensus 157 ~~~Il~~H~~~~~~~~~~~~~----~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 157 DFNILLLHGGVAGAGPSDSER----APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred CcEEEEEeeeeecCCCCcccc----cccCcHhhcCcCCCEEECCCcccCeee
Confidence 458999999976544321110 123344566789999999999987543
No 32
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.48 E-value=3.2e-13 Score=123.32 Aligned_cols=212 Identities=17% Similarity=0.108 Sum_probs=121.3
Q ss_pred CCCeEEEEEcccCCCCCh---HHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCC
Q 017051 134 QFPITFAVAGDLGQTGWT---KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESI 210 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~---~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~ 210 (378)
..+++++.++|+|..... .+.+..+.+..||+|+++||+++. ......+...+.++++.+..+++++.||||+...
T Consensus 42 ~~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~-~~~~~~~~~~~~L~~L~~~~gv~av~GNHd~~~~ 120 (284)
T COG1408 42 LQGLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDG-DRPPGVAALALFLAKLKAPLGVFAVLGNHDYGVD 120 (284)
T ss_pred cCCeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecC-CCCCCHHHHHHHHHhhhccCCEEEEecccccccc
Confidence 468999999999987654 345555667888999999999974 1234567777888999888999999999999533
Q ss_pred CcccchhhhchhcccCC--CCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHH-----------HHHHhhhccCC
Q 017051 211 PLIMDAFQSYNARWKMP--FEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRW-----------LKDDLSKVDRK 277 (378)
Q Consensus 211 ~~~~~~~~~~~~~~~~p--~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~W-----------L~~~L~~~~~~ 277 (378)
..... .....+..... .+.........-.++.++.+... ....++..- +.+.+.+.+.
T Consensus 121 ~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~- 191 (284)
T COG1408 121 RSNVY-IGDLLEELGRVVLRNEIAVIDLLALRIEVGGLDLYL-------AGVEDILAGLPLAPFTIGLDIAEALKQLDE- 191 (284)
T ss_pred cccch-hhhhhhhcceeeecccchhccccccccccccccccc-------ccCchHHhhCcccccccccchhhhhccccc-
Confidence 21100 01111110000 00000000000001111111000 001122221 2233444332
Q ss_pred CCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCC--------------cCCCc
Q 017051 278 KTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGK--------------PDPCG 343 (378)
Q Consensus 278 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~--------------~~~~g 343 (378)
+ ...|++.|.|-.. ..++++++|++||||+|..|...|..... ...+.
T Consensus 192 ~-~~~IlL~H~P~~~-----------------~~~~~~~~dLvLSGHTHGGQi~~p~~~~l~~~~~~~~~~~g~~~~~~~ 253 (284)
T COG1408 192 D-LPGILLSHEPDII-----------------LQLRLYGVDLVLSGHTHGGQIRLPLWGPLVTNALSGRYRAGGLRQFGA 253 (284)
T ss_pred c-ccceEeccCCcee-----------------hhhccCcceEEEeccccCCeEEeecccccccccccccccccceecCCc
Confidence 2 3489999999432 22566789999999999998877654321 11122
Q ss_pred cEEEEeCCCCCCCCccccccccccCceeccc
Q 017051 344 AVYITIGDGGNKEGLARKYVLTYRNIFELSN 374 (378)
Q Consensus 344 ~~yiv~G~gG~~~~~~~~~~~p~~~~~e~~~ 374 (378)
.+||..|-|. .....+.+.+|+..++++..
T Consensus 254 ~lyVSrGlG~-~~~p~R~~~~PEI~vitL~~ 283 (284)
T COG1408 254 QLYVSRGLGT-TGPPIRLGCPPEITVITLKA 283 (284)
T ss_pred eEEEeCCcCC-CCCCcccCCCceEEEEEEec
Confidence 3566555554 33456788999999998753
No 33
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.46 E-value=4.4e-13 Score=112.31 Aligned_cols=154 Identities=25% Similarity=0.266 Sum_probs=93.2
Q ss_pred eEEEEEcccCCCCC-hHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccc
Q 017051 137 ITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMD 215 (378)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~ 215 (378)
+||+++||+|.... ..++++.+ .++|+|+++||+++. +.+.+.++.+ |++++.||||...
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~-------~~~~~~~~~~----~~~~v~GNHD~~~------ 61 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP-------EEVLELLRDI----PVYVVRGNHDNWA------ 61 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH-------HHHHHHHHHH----EEEEE--CCHSTH------
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH-------HHHHHHHhcC----CEEEEeCCccccc------
Confidence 58999999997632 24556666 569999999999862 3333333333 9999999999731
Q ss_pred hhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCC
Q 017051 216 AFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNE 295 (378)
Q Consensus 216 ~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~ 295 (378)
+...... .. +.+.+.. .-....|++.|.+++....
T Consensus 62 ----~~~~~~~----------~~----------------------------~~~~~~~---~~~~~~i~~~H~~~~~~~~ 96 (156)
T PF12850_consen 62 ----FPNENDE----------EY----------------------------LLDALRL---TIDGFKILLSHGHPYDVQW 96 (156)
T ss_dssp ----HHSEECT----------CS----------------------------SHSEEEE---EETTEEEEEESSTSSSSTT
T ss_pred ----chhhhhc----------cc----------------------------cccceee---eecCCeEEEECCCCccccc
Confidence 1111000 00 1111110 0113588999987765321
Q ss_pred CCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEeCCCCCCCCccccccccccCceeccc
Q 017051 296 AHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYVLTYRNIFELSN 374 (378)
Q Consensus 296 ~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~~~~~p~~~~~e~~~ 374 (378)
..+.+...+...+++++++||.|..+... ..++.++..|+-+..... ..+.|.++++++
T Consensus 97 --------~~~~~~~~~~~~~~~~~~~GH~H~~~~~~--------~~~~~~~~~Gs~~~~~~~----~~~~~~i~~~~~ 155 (156)
T PF12850_consen 97 --------DPAELREILSRENVDLVLHGHTHRPQVFK--------IGGIHVINPGSIGGPRHG----DQSGYAILDIED 155 (156)
T ss_dssp --------THHHHHHHHHHTTSSEEEESSSSSEEEEE--------ETTEEEEEE-GSSS-SSS----SSEEEEEEEETT
T ss_pred --------ChhhhhhhhcccCCCEEEcCCcccceEEE--------ECCEEEEECCcCCCCCCC----CCCEEEEEEEec
Confidence 23456688889999999999999976654 257888999976654321 178899998875
No 34
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.44 E-value=1.3e-12 Score=105.34 Aligned_cols=116 Identities=29% Similarity=0.283 Sum_probs=83.8
Q ss_pred EEEcccCCCCChHHHH---HHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccch
Q 017051 140 AVAGDLGQTGWTKSTL---DHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDA 216 (378)
Q Consensus 140 ~~~gD~~~~~~~~~~~---~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~ 216 (378)
+++||+|......... ....+.++|+||++||+++...... +..+...........|+++++||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~GNHD---------- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPE-EVLAAALALLLLLGIPVYVVPGNHD---------- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCch-HHHHHHHHHhhcCCCCEEEeCCCce----------
Confidence 4689998775443332 3456789999999999998665433 3332223333344599999999999
Q ss_pred hhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCC
Q 017051 217 FQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA 296 (378)
Q Consensus 217 ~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~ 296 (378)
|+++|.|++.....
T Consensus 70 ------------------------------------------------------------------i~~~H~~~~~~~~~ 83 (131)
T cd00838 70 ------------------------------------------------------------------ILLTHGPPYDPLDE 83 (131)
T ss_pred ------------------------------------------------------------------EEEeccCCCCCchh
Confidence 89999998776543
Q ss_pred CCCCchHHHHHHHHHHHhcCCcEEEecCccccceee
Q 017051 297 HQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (378)
Q Consensus 297 ~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 332 (378)
........+..+..++.+.+++++|+||.|.+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 84 LSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred hcccchhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 222222246888899999999999999999998775
No 35
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.44 E-value=1.6e-12 Score=106.38 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=78.7
Q ss_pred EEEEEcccCCCCChHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccchh
Q 017051 138 TFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAF 217 (378)
Q Consensus 138 ~f~~~gD~~~~~~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~ 217 (378)
||+++||+|.... .+...++|+|+++||+++.+.. ..++.+.+.++.+. ..++++++||||...
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~~~~-~~~~~~~~~l~~~~-~~~~~~v~GNHD~~~-------- 64 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTERGTL-EELQKFLDWLKSLP-HPHKIVIAGNHDLTL-------- 64 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCCCCH-HHHHHHHHHHHhCC-CCeEEEEECCCCCcC--------
Confidence 5899999996643 3345789999999999875432 33444445554442 123578999999720
Q ss_pred hhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCC
Q 017051 218 QSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAH 297 (378)
Q Consensus 218 ~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~ 297 (378)
. . + .+.|+++|.|++......
T Consensus 65 ------------------~---------------------------------------~-~-~~~ilv~H~~p~~~~~~~ 85 (135)
T cd07379 65 ------------------D---------------------------------------P-E-DTDILVTHGPPYGHLDLV 85 (135)
T ss_pred ------------------C---------------------------------------C-C-CCEEEEECCCCCcCcccc
Confidence 0 1 1 237899999998755432
Q ss_pred CCCchHHHHHHHHHHHhcCCcEEEecCccccc
Q 017051 298 QGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (378)
Q Consensus 298 ~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 329 (378)
........+.+.+++++++++++++||+|...
T Consensus 86 ~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 86 SSGQRVGCEELLNRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred ccCcccCCHHHHHHHHHHCCcEEEEcCcCCcC
Confidence 21112234677888899999999999999864
No 36
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.44 E-value=5.3e-12 Score=111.50 Aligned_cols=198 Identities=18% Similarity=0.196 Sum_probs=99.1
Q ss_pred eEEEEEcccCCCCChHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccch
Q 017051 137 ITFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDA 216 (378)
Q Consensus 137 ~~f~~~gD~~~~~~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~ 216 (378)
+|++++||+|... .....+.++..+||+|+++||+++.. ..+.+.+..+ ..|+++++||||..........
T Consensus 1 ~rIa~isDiHg~~-~~~~~~~l~~~~pD~Vl~~GDi~~~~------~~~~~~l~~l--~~p~~~V~GNHD~~~~~~~~~k 71 (238)
T cd07397 1 LRIAIVGDVHGQW-DLEDIKALHLLQPDLVLFVGDFGNES------VQLVRAISSL--PLPKAVILGNHDAWYDATFRKK 71 (238)
T ss_pred CEEEEEecCCCCc-hHHHHHHHhccCCCEEEECCCCCcCh------HHHHHHHHhC--CCCeEEEcCCCcccccccccch
Confidence 5899999999653 23334566778999999999998432 1222223322 2799999999998532211001
Q ss_pred hhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCC----------------C--CCcHHHHHHHHHHhhhccCCC
Q 017051 217 FQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYAD----------------Y--DEYSDQYRWLKDDLSKVDRKK 278 (378)
Q Consensus 217 ~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~----------------~--~~~~~Q~~WL~~~L~~~~~~~ 278 (378)
...+.+....-. ...-.|-..++....+.++.+... | ....+-++.+-+.++.... .
T Consensus 72 ~~~l~~~L~~lg----~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~-~ 146 (238)
T cd07397 72 GDRVQEQLELLG----DLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPP-D 146 (238)
T ss_pred HHHHHHHHHHhC----CcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCC-C
Confidence 112222111110 000011112233223333333110 1 1123334444444443332 2
Q ss_pred CCeEEEEeccccccCCCC--------------CCCCchHHHHHHHHHHHhcCCcEEEecCccccceeec-ccC-CCcCCC
Q 017051 279 TPWLLVLLHVPWYNSNEA--------------HQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIR-VNN-GKPDPC 342 (378)
Q Consensus 279 ~~~~iv~~H~P~~~~~~~--------------~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~-~~~-~~~~~~ 342 (378)
.+ .|++.|.++....+. ..++ ..+.+++..+-..-.++++++||.|.--|... .+. -..+.+
T Consensus 147 ~~-~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~-~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~~~~r~~~~~~~~ 224 (238)
T cd07397 147 LP-LILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGD-PDLALAISQIQQGRQVPLVVFGHMHHRLRRGKGLRNMIAVDRE 224 (238)
T ss_pred CC-eEEEeCcCCcCCCcccccccccccCCcCCCCCC-HHHHHHHHHHhccCCCCEEEeCCccCcccccccccceeeecCC
Confidence 23 799999998765421 1111 12444444333223489999999997532221 100 013457
Q ss_pred ccEEEEeC
Q 017051 343 GAVYITIG 350 (378)
Q Consensus 343 g~~yiv~G 350 (378)
|++|+..+
T Consensus 225 gt~y~N~a 232 (238)
T cd07397 225 GTVYLNAA 232 (238)
T ss_pred CeEEEecc
Confidence 99998654
No 37
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.41 E-value=6.6e-12 Score=107.70 Aligned_cols=204 Identities=16% Similarity=0.181 Sum_probs=123.3
Q ss_pred CCeEEEEEcccCCCCC-hHHHHHHhhcCCCcEEEeccccc--cccchhhhHHHHHHhhHhhh-hCCceeecCCCCccCCC
Q 017051 135 FPITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLS--YADYMQHRWDTFGELVQPLA-SARPWMVTQGNHEKESI 210 (378)
Q Consensus 135 ~~~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vi~~GDl~--~~~~~~~~~~~~~~~~~~l~-~~~P~~~v~GNHD~~~~ 210 (378)
..+++++++|.|.... .++.+..++..++|+++++||++ +-+..... .... .++.+. ..+|+++++||-|-...
T Consensus 2 ~~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~-~~~~-~~e~l~~~~~~v~avpGNcD~~~v 79 (226)
T COG2129 2 KKMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVA-EELN-KLEALKELGIPVLAVPGNCDPPEV 79 (226)
T ss_pred CcceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCchHHH-Hhhh-HHHHHHhcCCeEEEEcCCCChHHH
Confidence 3689999999987653 34555556677999999999999 43332111 1100 034444 34999999999887321
Q ss_pred CcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCc--CCC----CCcH-HHHHHHHHHhhhccCCCCCeEE
Q 017051 211 PLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSY--ADY----DEYS-DQYRWLKDDLSKVDRKKTPWLL 283 (378)
Q Consensus 211 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~--~~~----~~~~-~Q~~WL~~~L~~~~~~~~~~~i 283 (378)
. . ..+.....- .+ -...++++.|+++... +.+ ...+ +-+.-|++.+++... +-.|
T Consensus 80 ~------~-~l~~~~~~v------~~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~---~~~I 141 (226)
T COG2129 80 I------D-VLKNAGVNV------HG--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADN---PVNI 141 (226)
T ss_pred H------H-HHHhccccc------cc--ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccC---cceE
Confidence 1 1 111111110 01 4567788888875431 111 1122 233445555555432 1139
Q ss_pred EEeccccccCCCCCCCC-chHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEeCCCCCCCCccccc
Q 017051 284 VLLHVPWYNSNEAHQGE-GDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKY 362 (378)
Q Consensus 284 v~~H~P~~~~~~~~~~~-~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~~~ 362 (378)
+++|.|||......... .......+.+++++.++-+.+|||.|-+.-... -..|+.|..|. .
T Consensus 142 l~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~-------iG~TivVNPG~----------~ 204 (226)
T COG2129 142 LLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDK-------IGNTIVVNPGP----------L 204 (226)
T ss_pred EEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeecccccccc-------cCCeEEECCCC----------c
Confidence 99999999876542111 234578999999999999999999997433222 24677776665 2
Q ss_pred cccccCceecccc
Q 017051 363 VLTYRNIFELSNS 375 (378)
Q Consensus 363 ~~p~~~~~e~~~~ 375 (378)
.+.+|.+++++++
T Consensus 205 ~~g~yA~i~l~~~ 217 (226)
T COG2129 205 GEGRYALIELEKE 217 (226)
T ss_pred cCceEEEEEecCc
Confidence 3467777777653
No 38
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.31 E-value=1.3e-11 Score=103.41 Aligned_cols=147 Identities=20% Similarity=0.211 Sum_probs=91.8
Q ss_pred EEEEEcccCCCCC-hHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccch
Q 017051 138 TFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDA 216 (378)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~ 216 (378)
|++++||+|.... ..++++.+.. +|.|+++||+++...... +....|++.|+||||....
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d~ii~~GD~~~~~~~~~-----------~~~~~~~~~V~GNhD~~~~------ 61 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VDLIIHAGDVLYPGPLNE-----------LELKAPVIAVRGNCDGEVD------ 61 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CCEEEECCccccccccch-----------hhcCCcEEEEeCCCCCcCC------
Confidence 5899999996531 2233444333 999999999986543211 2334799999999998310
Q ss_pred hhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCC
Q 017051 217 FQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEA 296 (378)
Q Consensus 217 ~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~ 296 (378)
. ..+|. ...++++ .++|+++|.+.......
T Consensus 62 ----~--~~~p~---------~~~~~~~-----------------------------------g~~i~v~Hg~~~~~~~~ 91 (155)
T cd00841 62 ----F--PILPE---------EAVLEIG-----------------------------------GKRIFLTHGHLYGVKNG 91 (155)
T ss_pred ----c--ccCCc---------eEEEEEC-----------------------------------CEEEEEECCcccccccc
Confidence 0 00111 0001100 13688888876543211
Q ss_pred CCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEeCCCCCCCCccccccccccCceeccc
Q 017051 297 HQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYVLTYRNIFELSN 374 (378)
Q Consensus 297 ~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~~~~~p~~~~~e~~~ 374 (378)
. .. ..++++.++|++++||+|...... .++++++..|+.|.+.. ...+.|.+++++.
T Consensus 92 -------~-~~-~~~~~~~~~d~vi~GHtH~~~~~~--------~~~~~~inpGs~~~~~~----~~~~~~~i~~~~~ 148 (155)
T cd00841 92 -------L-DR-LYLAKEGGADVVLYGHTHIPVIEK--------IGGVLLLNPGSLSLPRG----GGPPTYAILEIDD 148 (155)
T ss_pred -------h-hh-hhhhhhcCCCEEEECcccCCccEE--------ECCEEEEeCCCccCcCC----CCCCeEEEEEecC
Confidence 0 11 455677899999999999865332 24788999998776532 2457889999875
No 39
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.30 E-value=1.8e-11 Score=104.72 Aligned_cols=109 Identities=15% Similarity=0.267 Sum_probs=70.6
Q ss_pred hhcCCCcEEEeccccccccchh--hhHHHHHHhhHhh---hhCCceeecCCCCccCCCCcccchhhhchhcccCCCCCCC
Q 017051 158 IGQCKYDVHLLPGDLSYADYMQ--HRWDTFGELVQPL---ASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESG 232 (378)
Q Consensus 158 i~~~~~d~vi~~GDl~~~~~~~--~~~~~~~~~~~~l---~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~ 232 (378)
+...+||+|+++||+++.+... .+|.+..+.+.++ ...+|++.++||||.++.... ....-.++|.
T Consensus 38 ~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~--~~~~~v~RF~------- 108 (195)
T cd08166 38 LNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEED--PIESKIRRFE------- 108 (195)
T ss_pred HhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCC--cCHHHHHHHH-------
Confidence 3467999999999999987642 2344333333333 234899999999999632110 0011112220
Q ss_pred CCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHH
Q 017051 233 SNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLL 312 (378)
Q Consensus 233 ~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~ 312 (378)
.+| |+++|.|+..... ..+..++
T Consensus 109 ----~~F-------------------------------------------i~lsH~P~~~~~~----------~~~~~~~ 131 (195)
T cd08166 109 ----KYF-------------------------------------------IMLSHVPLLAEGG----------QALKHVV 131 (195)
T ss_pred ----Hhh-------------------------------------------eeeeccccccccc----------HHHHHHH
Confidence 011 8999999875332 3667888
Q ss_pred HhcCCcEEEecCccccceee
Q 017051 313 YAASVDLVLAGHVHAYERSI 332 (378)
Q Consensus 313 ~~~~vdlvl~GH~H~y~r~~ 332 (378)
.+++++++|+||.|.+....
T Consensus 132 ~~~~p~~Ifs~H~H~s~~~~ 151 (195)
T cd08166 132 TDLDPDLIFSAHRHKSSIFM 151 (195)
T ss_pred HhcCceEEEEcCccceeeEE
Confidence 99999999999999876543
No 40
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.30 E-value=3.5e-11 Score=102.90 Aligned_cols=192 Identities=18% Similarity=0.195 Sum_probs=97.8
Q ss_pred eEEEEEcccCCCC-ChHHHHHHhhcCCCcEEEeccccccccchhhhHH--------------------------HHHHhh
Q 017051 137 ITFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWD--------------------------TFGELV 189 (378)
Q Consensus 137 ~~f~~~gD~~~~~-~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~--------------------------~~~~~~ 189 (378)
-++++++|.+... ...+++..+...+||.|+++||+........+|. .|++.+
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L 85 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL 85 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH
Confidence 4789999986432 2345666677889999999999987665556666 455555
Q ss_pred HhhhhCCceeecCCCCccCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcC-CCC------C--c
Q 017051 190 QPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYA-DYD------E--Y 260 (378)
Q Consensus 190 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~-~~~------~--~ 260 (378)
..+. +|++++|||||-......+ ..|....-.|.-. .-...+.+--|...++++.... +.. . .
T Consensus 86 ~~~~--~p~~~vPG~~Dap~~~~lr---~a~~~e~v~p~~~---~vH~sf~~~~g~y~v~G~GGeI~~~~~~~~~~LrYP 157 (255)
T PF14582_consen 86 GELG--VPVFVVPGNMDAPERFFLR---EAYNAEIVTPHIH---NVHESFFFWKGEYLVAGMGGEITDDQREEEFKLRYP 157 (255)
T ss_dssp HCC---SEEEEE--TTS-SHHHHHH---HHHHCCCC-TTEE---E-CTCEEEETTTEEEEEE-SEEESSS-BCSSS-EEE
T ss_pred HhcC--CcEEEecCCCCchHHHHHH---HHhccceecccee---eeeeeecccCCcEEEEecCccccCCCccccccccch
Confidence 4443 9999999999983211000 1111111122100 0012233334457788776531 110 0 1
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEEecccc-ccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCc
Q 017051 261 SDQYRWLKDDLSKVDRKKTPWLLVLLHVPW-YNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKP 339 (378)
Q Consensus 261 ~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~-~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~ 339 (378)
....+|..+.|..++ + .-+|+++|.|| ...+..+ ...+.+.++++++++++|||||.|--.-...+
T Consensus 158 ~weaey~lk~l~elk--~-~r~IlLfhtpPd~~kg~~h-----~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e~l----- 224 (255)
T PF14582_consen 158 AWEAEYSLKFLRELK--D-YRKILLFHTPPDLHKGLIH-----VGSAAVRDLIKTYNPDIVLCGHIHESHGKESL----- 224 (255)
T ss_dssp HHHHHHHHGGGGGCT--S-SEEEEEESS-BTBCTCTBT-----TSBHHHHHHHHHH--SEEEE-SSS-EE--EEE-----
T ss_pred HHHHHHHHHHHHhcc--c-ccEEEEEecCCccCCCccc-----ccHHHHHHHHHhcCCcEEEecccccchhhHHh-----
Confidence 234456566666653 2 23788899999 3322222 23478999999999999999999974422322
Q ss_pred CCCccEEEEeCC
Q 017051 340 DPCGAVYITIGD 351 (378)
Q Consensus 340 ~~~g~~yiv~G~ 351 (378)
..++-|..|+
T Consensus 225 --G~TlVVNPGs 234 (255)
T PF14582_consen 225 --GKTLVVNPGS 234 (255)
T ss_dssp --TTEEEEE--B
T ss_pred --CCEEEecCcc
Confidence 2455565553
No 41
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.29 E-value=5.5e-11 Score=100.02 Aligned_cols=152 Identities=17% Similarity=0.183 Sum_probs=92.0
Q ss_pred eEEEEEcccCCCCCh-HHHHHHhhcC-CCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCccc
Q 017051 137 ITFAVAGDLGQTGWT-KSTLDHIGQC-KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIM 214 (378)
Q Consensus 137 ~~f~~~gD~~~~~~~-~~~~~~i~~~-~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~ 214 (378)
+|++++||+|..... +..++.++.. ++|.|+++||++. .. ..+.++.+ ..|+++|.||||...
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~----~~----~~~~l~~~--~~~~~~V~GN~D~~~----- 65 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLTS----PF----VLKEFEDL--AAKVIAVRGNNDGER----- 65 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCCC----HH----HHHHHHHh--CCceEEEccCCCchh-----
Confidence 489999999965432 3444555555 8999999999982 11 12223322 258999999999820
Q ss_pred chhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCC
Q 017051 215 DAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSN 294 (378)
Q Consensus 215 ~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~ 294 (378)
. .+|. ...+.+ ..++|+++|-..+...
T Consensus 66 -------~--~~~~---------~~~~~~-----------------------------------~g~~i~l~Hg~~~~~~ 92 (158)
T TIGR00040 66 -------D--ELPE---------EEIFEA-----------------------------------EGIDFGLVHGDLVYPR 92 (158)
T ss_pred -------h--hCCc---------ceEEEE-----------------------------------CCEEEEEEeCcccccC
Confidence 0 0111 000111 1246788886542221
Q ss_pred CCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEeCCCCCCCCccccccccccCceeccc
Q 017051 295 EAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYVLTYRNIFELSN 374 (378)
Q Consensus 295 ~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~~~~~p~~~~~e~~~ 374 (378)
. . ...+..+.+..++|++++||+|...... ..+++++..|+-+.+.. -..|.|.++++++
T Consensus 93 ~-----~---~~~l~~~~~~~~~d~vi~GHtH~~~~~~--------~~~~~~iNpGs~~~~~~----~~~~~~~il~~~~ 152 (158)
T TIGR00040 93 G-----D---LLVLEYLAKELGVDVLIFGHTHIPVAEE--------LRGILLINPGSLTGPRN----GNTPSYAILDVDK 152 (158)
T ss_pred C-----C---HHHHHHHHhccCCCEEEECCCCCCccEE--------ECCEEEEECCccccccC----CCCCeEEEEEecC
Confidence 1 1 1344555566789999999999753322 14788898998665432 1257899999875
Q ss_pred cc
Q 017051 375 SN 376 (378)
Q Consensus 375 ~~ 376 (378)
+.
T Consensus 153 ~~ 154 (158)
T TIGR00040 153 DK 154 (158)
T ss_pred Ce
Confidence 43
No 42
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.28 E-value=2e-10 Score=98.31 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=92.1
Q ss_pred EEEEEcccCCCCCh---H-HHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcc
Q 017051 138 TFAVAGDLGQTGWT---K-STLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLI 213 (378)
Q Consensus 138 ~f~~~gD~~~~~~~---~-~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~ 213 (378)
+++++||+|..... . .+.+.++..++|.|+|+||++. ...++ .++.+ ..|++.|.||||...
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~----~~~~~----~l~~~--~~~~~~V~GN~D~~~---- 66 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCS----KETYD----YLKTI--APDVHIVRGDFDENL---- 66 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCC----HHHHH----HHHhh--CCceEEEECCCCccc----
Confidence 47899999954322 2 3444444578999999999985 12222 22332 247999999999820
Q ss_pred cchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccC
Q 017051 214 MDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNS 293 (378)
Q Consensus 214 ~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~ 293 (378)
.+|. ...+++++ ++|.++|--.+..
T Consensus 67 -----------~lp~---------~~~~~~~g-----------------------------------~~i~l~HG~~~~~ 91 (178)
T cd07394 67 -----------NYPE---------TKVITVGQ-----------------------------------FKIGLIHGHQVVP 91 (178)
T ss_pred -----------cCCC---------cEEEEECC-----------------------------------EEEEEEECCcCCC
Confidence 1232 11222232 3556666322211
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEeCCCCCCCCccccccccccCceecc
Q 017051 294 NEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYVLTYRNIFELS 373 (378)
Q Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~~~~~p~~~~~e~~ 373 (378)
.. ..+.+..++++.++|++++||+|...... .+|++++..|+.|.+....+....|.|.+++++
T Consensus 92 ~~--------~~~~~~~~~~~~~~dvii~GHTH~p~~~~--------~~g~~viNPGSv~~~~~~~~~~~~~syail~~~ 155 (178)
T cd07394 92 WG--------DPDSLAALQRQLDVDILISGHTHKFEAFE--------HEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQ 155 (178)
T ss_pred CC--------CHHHHHHHHHhcCCCEEEECCCCcceEEE--------ECCEEEEECCCCCCCCCCCCCCCCCeEEEEEec
Confidence 10 12345556677889999999999764433 257899999987755332233345788888876
Q ss_pred cc
Q 017051 374 NS 375 (378)
Q Consensus 374 ~~ 375 (378)
.+
T Consensus 156 ~~ 157 (178)
T cd07394 156 GS 157 (178)
T ss_pred CC
Confidence 44
No 43
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.25 E-value=6.8e-11 Score=106.55 Aligned_cols=192 Identities=17% Similarity=0.138 Sum_probs=98.8
Q ss_pred eEEEEEcccCCCCChH----HHHHHhh--cCCCcEEEecccccccc---c-hhhhHHHHHHhhHhhhhC-CceeecCCCC
Q 017051 137 ITFAVAGDLGQTGWTK----STLDHIG--QCKYDVHLLPGDLSYAD---Y-MQHRWDTFGELVQPLASA-RPWMVTQGNH 205 (378)
Q Consensus 137 ~~f~~~gD~~~~~~~~----~~~~~i~--~~~~d~vi~~GDl~~~~---~-~~~~~~~~~~~~~~l~~~-~P~~~v~GNH 205 (378)
++++++||+|.+.... ..++.+. ..+||.|+++||+++.- . .........+.++.+... +|+++++|||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4789999999765422 2334332 46899999999998631 1 112234445566666655 8999999999
Q ss_pred ccCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEE
Q 017051 206 EKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVL 285 (378)
Q Consensus 206 D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~ 285 (378)
|.... ..+.+...... -+....+++++.+++..-..... .....++++++.+... |...+
T Consensus 81 D~~~~-------~~~~~~~g~~~------l~~~~~~~~~g~~i~l~HGd~~~-~~d~~y~~~r~~~r~~------~~~~~ 140 (241)
T PRK05340 81 DFLLG-------KRFAKAAGMTL------LPDPSVIDLYGQRVLLLHGDTLC-TDDKAYQRFRRKVRNP------WLQWL 140 (241)
T ss_pred chhhh-------HHHHHhCCCEE------eCCcEEEEECCEEEEEECCcccc-cCCHHHHHHHHHHhCH------HHHHH
Confidence 98321 11211111100 01233466777777776442111 1122333333322221 11111
Q ss_pred eccccccCC---------------C-CCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEe
Q 017051 286 LHVPWYNSN---------------E-AHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITI 349 (378)
Q Consensus 286 ~H~P~~~~~---------------~-~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~ 349 (378)
.|.+++... . ..........+.+.+++++++++++++||+|...... +..+ ..+..|++.
T Consensus 141 ~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~-~~~~---~~~~~~~~l 216 (241)
T PRK05340 141 FLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQ-LQAG---GQPATRIVL 216 (241)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceee-ccCC---CcceEEEEe
Confidence 111111000 0 0000000123567788999999999999999864432 2111 112367888
Q ss_pred CCC
Q 017051 350 GDG 352 (378)
Q Consensus 350 G~g 352 (378)
|+-
T Consensus 217 gdw 219 (241)
T PRK05340 217 GDW 219 (241)
T ss_pred CCC
Confidence 865
No 44
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=99.23 E-value=2.5e-10 Score=110.48 Aligned_cols=210 Identities=20% Similarity=0.249 Sum_probs=120.6
Q ss_pred HHHHHHhh--cCCCcEEEeccccccccch----hhhH---HHHHHhhHhhhhCCceeecCCCCccCCCCccc-----ch-
Q 017051 152 KSTLDHIG--QCKYDVHLLPGDLSYADYM----QHRW---DTFGELVQPLASARPWMVTQGNHEKESIPLIM-----DA- 216 (378)
Q Consensus 152 ~~~~~~i~--~~~~d~vi~~GDl~~~~~~----~~~~---~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~-----~~- 216 (378)
..+++.|+ ..++|+|+++||++-.... +... ..+.+.+.+....+|++++.||||........ ..
T Consensus 198 es~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~ 277 (577)
T KOG3770|consen 198 ESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRH 277 (577)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchh
Confidence 45667775 3349999999999865532 1111 22334555666689999999999994221110 00
Q ss_pred -----hhhchhccc--CCCC-CCCCCCCceEEEE-eCCEEEEEEcCcCCC----------CCcHHHHHHHHHHhhhccCC
Q 017051 217 -----FQSYNARWK--MPFE-ESGSNSNLYYSFD-VAGAHLIMLGSYADY----------DEYSDQYRWLKDDLSKVDRK 277 (378)
Q Consensus 217 -----~~~~~~~~~--~p~~-~~~~~~~~~ysf~-~g~v~fi~ldt~~~~----------~~~~~Q~~WL~~~L~~~~~~ 277 (378)
+..+...|. +|.+ ......+.+|.-. +++.++|+||+..-+ .....|++|+..+|.+++.+
T Consensus 278 ~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~~ 357 (577)
T KOG3770|consen 278 SQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAESA 357 (577)
T ss_pred hhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHhc
Confidence 011111111 3332 2223346677654 578999999995322 13478899999999998664
Q ss_pred CCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcC--CcEEEecCccccceeecccCCCcCCCccEEEEeCCCCCC
Q 017051 278 KTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAAS--VDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNK 355 (378)
Q Consensus 278 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~ 355 (378)
+. -+=+++|.|+-.... ..+ ....+-.++.++. +...|.||.|.-+-.. .+.... +.-+.+.+.++.-
T Consensus 358 Ge-kVhil~HIPpG~~~c-~~~----ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~v-~yde~~---~~p~~v~~i~~sv 427 (577)
T KOG3770|consen 358 GE-KVHILGHIPPGDGVC-LEG----WSINFYRIVNRFRSTIAGQFYGHTHIDEFRV-FYDEET---GHPIAVAYIGPSV 427 (577)
T ss_pred CC-EEEEEEeeCCCCcch-hhh----hhHHHHHHHHHHHHhhhhhccccCcceeEEE-Eecccc---CCceeeeeccccc
Confidence 43 377889999754211 111 2244445555552 4466999999866443 232221 2222222333322
Q ss_pred CCccccccccccCceecc
Q 017051 356 EGLARKYVLTYRNIFELS 373 (378)
Q Consensus 356 ~~~~~~~~~p~~~~~e~~ 373 (378)
..-....|++++++++
T Consensus 428 --tty~~~~p~yr~y~~~ 443 (577)
T KOG3770|consen 428 --TTYYNKNPGYRIYAVD 443 (577)
T ss_pred --eehhccCCCceecccC
Confidence 2233568999998887
No 45
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.22 E-value=1e-10 Score=99.48 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=36.1
Q ss_pred hcCCCcEEEeccccccccch--hhhHHHHHHhhHhhh-------hCCceeecCCCCccC
Q 017051 159 GQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLA-------SARPWMVTQGNHEKE 208 (378)
Q Consensus 159 ~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~~~~~l~-------~~~P~~~v~GNHD~~ 208 (378)
...+||+||++||+++.... ...|......+..+. ..+|++.++||||..
T Consensus 42 ~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 42 QRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred HhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 47899999999999976543 234655444444432 158999999999995
No 46
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.16 E-value=1.2e-09 Score=97.78 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=46.7
Q ss_pred EEEcccCCCCCh----HHHHHHhhc--CCCcEEEecccccccc----chhhhHHHHHHhhHhhhhC-CceeecCCCCccC
Q 017051 140 AVAGDLGQTGWT----KSTLDHIGQ--CKYDVHLLPGDLSYAD----YMQHRWDTFGELVQPLASA-RPWMVTQGNHEKE 208 (378)
Q Consensus 140 ~~~gD~~~~~~~----~~~~~~i~~--~~~d~vi~~GDl~~~~----~~~~~~~~~~~~~~~l~~~-~P~~~v~GNHD~~ 208 (378)
+++||+|.+... +..++.+.+ .+||+|+++||+++.- ......+.+.+.++.+... +|+++++||||..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchh
Confidence 689999976532 334555543 3799999999999631 1112234455566666553 8999999999983
No 47
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.15 E-value=4.7e-10 Score=93.91 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=35.8
Q ss_pred hhcCCCcEEEeccccccccch--hhhHHHHHHhhHhhhh---CCceeecCCCCccC
Q 017051 158 IGQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLAS---ARPWMVTQGNHEKE 208 (378)
Q Consensus 158 i~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~~~~~l~~---~~P~~~v~GNHD~~ 208 (378)
+...+||+|+++||+++.... ...|..+...+..+.. .+|++.++||||..
T Consensus 34 i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 34 LWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred HHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 346899999999999975432 2445554444443332 48999999999994
No 48
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=99.12 E-value=2.1e-09 Score=96.14 Aligned_cols=156 Identities=19% Similarity=0.135 Sum_probs=97.8
Q ss_pred EEEEEcccCCCCChHHHHHHhh----cCCCcEEEeccccccccch---------------------hhhH-HHHH-----
Q 017051 138 TFAVAGDLGQTGWTKSTLDHIG----QCKYDVHLLPGDLSYADYM---------------------QHRW-DTFG----- 186 (378)
Q Consensus 138 ~f~~~gD~~~~~~~~~~~~~i~----~~~~d~vi~~GDl~~~~~~---------------------~~~~-~~~~----- 186 (378)
||++.|+.+...........+. +.+||++|++||.+|.+.. ...+ +.+.
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~ 80 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSD 80 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCC
Confidence 5778888765544444555554 7899999999999998752 1111 1111
Q ss_pred HhhHhhhhCCceeecCCCCccCCCCcc---------------cchhhhchhcccCCCCCCC--CCCCceEEEEeCCE-EE
Q 017051 187 ELVQPLASARPWMVTQGNHEKESIPLI---------------MDAFQSYNARWKMPFEESG--SNSNLYYSFDVAGA-HL 248 (378)
Q Consensus 187 ~~~~~l~~~~P~~~v~GNHD~~~~~~~---------------~~~~~~~~~~~~~p~~~~~--~~~~~~ysf~~g~v-~f 248 (378)
..++.+.+++|++.++.+||+.++... ..+...|...+..+..... .....|+++.+|.. .|
T Consensus 81 p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~ 160 (228)
T cd07389 81 PDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDL 160 (228)
T ss_pred HHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceE
Confidence 245667778999999999999643221 0122344444433332221 23578999999996 99
Q ss_pred EEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcC--CcEEEecCcc
Q 017051 249 IMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAAS--VDLVLAGHVH 326 (378)
Q Consensus 249 i~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--vdlvl~GH~H 326 (378)
++||+.... . .+......++.+..++.+.+ -.++|||+.|
T Consensus 161 ~~lD~R~~R-------------------------------------d-~W~~~~~er~~l~~~~~~~~~~~vv~lSGDvH 202 (228)
T cd07389 161 ILLDTRTYR-------------------------------------D-SWDGYPAERERLLDLLAKRKIKNVVFLSGDVH 202 (228)
T ss_pred EEEeccccc-------------------------------------c-cccccHHHHHHHHHHHHHhCCCCeEEEecHHH
Confidence 999997654 1 11222345677777655543 2388999999
Q ss_pred cccee
Q 017051 327 AYERS 331 (378)
Q Consensus 327 ~y~r~ 331 (378)
.....
T Consensus 203 ~~~~~ 207 (228)
T cd07389 203 LAEAS 207 (228)
T ss_pred HHHHh
Confidence 75443
No 49
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.10 E-value=8.5e-10 Score=89.34 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=69.3
Q ss_pred EEEcccCCCCChHHHHHHh--hcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccchh
Q 017051 140 AVAGDLGQTGWTKSTLDHI--GQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAF 217 (378)
Q Consensus 140 ~~~gD~~~~~~~~~~~~~i--~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~ 217 (378)
+++||+|.. ...+.++ ...++|+++++||+.. ...+ .++.+ ...|++++.||||
T Consensus 1 ~viSDtH~~---~~~~~~~~~~~~~~d~ii~~GD~~~-----~~~~----~~~~~-~~~~~~~V~GN~D----------- 56 (129)
T cd07403 1 LVISDTESP---ALYSPEIKVRLEGVDLILSAGDLPK-----EYLE----YLVTM-LNVPVYYVHGNHD----------- 56 (129)
T ss_pred CeeccccCc---cccchHHHhhCCCCCEEEECCCCCh-----HHHH----HHHHH-cCCCEEEEeCCCc-----------
Confidence 478999943 2233333 2578999999999852 1122 22222 2468999999999
Q ss_pred hhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCC
Q 017051 218 QSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAH 297 (378)
Q Consensus 218 ~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~ 297 (378)
.+|+++|+|++......
T Consensus 57 ---------------------------------------------------------------~~Ilv~H~pp~~~~~~~ 73 (129)
T cd07403 57 ---------------------------------------------------------------VDILLTHAPPAGIGDGE 73 (129)
T ss_pred ---------------------------------------------------------------cCEEEECCCCCcCcCcc
Confidence 25889999987543211
Q ss_pred CCCchHHHHHHHHHHHhcCCcEEEecCcccccee
Q 017051 298 QGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERS 331 (378)
Q Consensus 298 ~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~ 331 (378)
. ......+.+.+++.+++++++|+||+|.....
T Consensus 74 ~-~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 74 D-FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred c-ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 1 11123578888899999999999999975443
No 50
>PRK09453 phosphodiesterase; Provisional
Probab=99.10 E-value=2e-09 Score=92.72 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=45.5
Q ss_pred eEEEEEcccCCCCC-hHHHHHHhhcCCCcEEEeccccccccchh-----hhHHHHHHhhHhhhhCCceeecCCCCcc
Q 017051 137 ITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQ-----HRWDTFGELVQPLASARPWMVTQGNHEK 207 (378)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vi~~GDl~~~~~~~-----~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 207 (378)
+|++++||+|.... .+++++.+++.++|.|+++||+++.+... ...+...+.++.+ ..+++.+.||||.
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~--~~~v~~V~GNhD~ 75 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY--ADKIIAVRGNCDS 75 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhc--CCceEEEccCCcc
Confidence 48999999995422 24455666678999999999998643210 0122223333322 2689999999997
No 51
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.05 E-value=7.2e-09 Score=99.23 Aligned_cols=74 Identities=22% Similarity=0.145 Sum_probs=50.0
Q ss_pred CCeEEEEEcccCCCCCh-------------HHHHHHhhcCCCcEEEeccccccccchh-hhHHHHHHhhHh---------
Q 017051 135 FPITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYMQ-HRWDTFGELVQP--------- 191 (378)
Q Consensus 135 ~~~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vi~~GDl~~~~~~~-~~~~~~~~~~~~--------- 191 (378)
+.+||++++|+|.+... .++++.+.+.++|+||++||+.+..... .....+.+.++.
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~ 81 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCE 81 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccc
Confidence 56899999999976311 2344555688999999999999765541 122222333322
Q ss_pred ---h----------------------hhCCceeecCCCCccC
Q 017051 192 ---L----------------------ASARPWMVTQGNHEKE 208 (378)
Q Consensus 192 ---l----------------------~~~~P~~~v~GNHD~~ 208 (378)
+ ...+|++++.||||..
T Consensus 82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p 123 (405)
T TIGR00583 82 LEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDP 123 (405)
T ss_pred hhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCc
Confidence 0 1258999999999995
No 52
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.01 E-value=5e-09 Score=95.10 Aligned_cols=196 Identities=16% Similarity=0.128 Sum_probs=102.3
Q ss_pred eEEEEEcccCCCC-------C---hHHHHHHhhcCCCc-EEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCC
Q 017051 137 ITFAVAGDLGQTG-------W---TKSTLDHIGQCKYD-VHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNH 205 (378)
Q Consensus 137 ~~f~~~gD~~~~~-------~---~~~~~~~i~~~~~d-~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNH 205 (378)
++|+.++|+|..- . ....++++.+.+|| +++.+||++....... +......++.+...-.-+.++|||
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~-~~~~~~~~~~l~~~g~d~~~~GNH 79 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST-ATKGEANIELMNALGYDAVTIGNH 79 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh-ccCCcHHHHHHHhcCCCEEeeccc
Confidence 4799999998432 1 13566677777788 7799999987554321 111112222232223456788999
Q ss_pred ccCCCCcccchhhhchhcccCCC---C----C--C-CCCCCceEEEEeCCEE--EEEEcCcCCCC----------CcHHH
Q 017051 206 EKESIPLIMDAFQSYNARWKMPF---E----E--S-GSNSNLYYSFDVAGAH--LIMLGSYADYD----------EYSDQ 263 (378)
Q Consensus 206 D~~~~~~~~~~~~~~~~~~~~p~---~----~--~-~~~~~~~ysf~~g~v~--fi~ldt~~~~~----------~~~~Q 263 (378)
|+..... .+....+....|. + . . ......|..++.++++ |+++.+..... .....
T Consensus 80 e~d~g~~---~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~~ 156 (252)
T cd00845 80 EFDYGLD---ALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFEDL 156 (252)
T ss_pred cccccHH---HHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCceecCH
Confidence 9953321 2222222222111 0 0 0 0112345567788754 45554321100 00122
Q ss_pred HHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCc
Q 017051 264 YRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCG 343 (378)
Q Consensus 264 ~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g 343 (378)
.+.+++..+..+ .+...+|++.|.|... ...+.+.+ .++|++|+||.|........ .++
T Consensus 157 ~~~~~~~~~~~~-~~~D~vIvl~H~g~~~------------~~~la~~~--~giDlvlggH~H~~~~~~~~------~~~ 215 (252)
T cd00845 157 AEAVAVAEELLA-EGADVIILLSHLGLDD------------DEELAEEV--PGIDVILGGHTHHLLEEPEV------VNG 215 (252)
T ss_pred HHHHHHHHHHHh-CCCCEEEEEeccCccc------------hHHHHhcC--CCccEEEcCCcCcccCCCcc------cCC
Confidence 333433222222 3667899999988542 12222212 58999999999986543211 246
Q ss_pred cEEEEeCCCCCCCC
Q 017051 344 AVYITIGDGGNKEG 357 (378)
Q Consensus 344 ~~yiv~G~gG~~~~ 357 (378)
++.+-+|+=|...+
T Consensus 216 ~~v~~~g~~~~~~~ 229 (252)
T cd00845 216 TLIVQAGKYGKYVG 229 (252)
T ss_pred EEEEeCChhHceEE
Confidence 77777775554433
No 53
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.96 E-value=1.9e-08 Score=92.57 Aligned_cols=204 Identities=15% Similarity=0.126 Sum_probs=106.5
Q ss_pred eEEEEEcccCCCCC-----------------hHHHHHHhhcCCCcEEEe-ccccccccchhhhH---------HHHHHhh
Q 017051 137 ITFAVAGDLGQTGW-----------------TKSTLDHIGQCKYDVHLL-PGDLSYADYMQHRW---------DTFGELV 189 (378)
Q Consensus 137 ~~f~~~gD~~~~~~-----------------~~~~~~~i~~~~~d~vi~-~GDl~~~~~~~~~~---------~~~~~~~ 189 (378)
++|+..+|+|..-. ....++++.+.+|+.+++ +||+...... ..+ +...+.+
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~-~~~~~~~~~~~~~~~~~~l 79 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPL-ADYYAKIEDGDPHPMIAAM 79 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHH-HHHhhhcccCCCChHHHHH
Confidence 47888888874310 134556666678888776 9999875431 111 1122333
Q ss_pred HhhhhCCceeecCCCCccCCCCcccchhhhchhcccCCC---C----C-CCCCCCceEEEEeC-CEEEEEEcCcCCC---
Q 017051 190 QPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E----E-SGSNSNLYYSFDVA-GAHLIMLGSYADY--- 257 (378)
Q Consensus 190 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~---~----~-~~~~~~~~ysf~~g-~v~fi~ldt~~~~--- 257 (378)
+.+ -.-+.++||||+.... +.+....+....|. + . .......|.-++.+ ++++-++.-....
T Consensus 80 n~~---g~d~~~lGNHe~d~g~---~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~~ 153 (277)
T cd07410 80 NAL---GYDAGTLGNHEFNYGL---DYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIPN 153 (277)
T ss_pred Hhc---CCCEEeecccCcccCH---HHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCccccc
Confidence 333 2346678999985322 12222222222221 0 0 01112456667888 8665554421110
Q ss_pred ------------CCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHh-cCCcEEEecC
Q 017051 258 ------------DEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGH 324 (378)
Q Consensus 258 ------------~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~vdlvl~GH 324 (378)
....+..++..+.|++ +++..+|+++|.+........ .. .......+.++ -++|++|+||
T Consensus 154 ~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~-~~---~~~~~~~la~~~~~vD~IlgGH 226 (277)
T cd07410 154 WEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEES-LT---GENAAYELAEEVPGIDAILTGH 226 (277)
T ss_pred ccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCcccc-cC---CccHHHHHHhcCCCCcEEEeCC
Confidence 0112233444444443 356789999999865432100 01 11222344444 4899999999
Q ss_pred ccccceeecccCCCcCCCccEEEEeCCCCCCCCcccc
Q 017051 325 VHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARK 361 (378)
Q Consensus 325 ~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~~ 361 (378)
.|...... ..++++.+-+|+-|...+....
T Consensus 227 sH~~~~~~-------~~~~~~v~q~g~~g~~vg~l~l 256 (277)
T cd07410 227 QHRRFPGP-------TVNGVPVVQPGNWGSHLGVIDL 256 (277)
T ss_pred CccccccC-------CcCCEEEEcCChhhCEEEEEEE
Confidence 99754321 1246777777777766554443
No 54
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.96 E-value=1.8e-08 Score=91.61 Aligned_cols=197 Identities=17% Similarity=0.193 Sum_probs=104.6
Q ss_pred eEEEEEcccCCCC-----------ChHHHHHHhhcCCCc-EEEeccccccccchhh--hHHHHHHhhHhhhhCCceeecC
Q 017051 137 ITFAVAGDLGQTG-----------WTKSTLDHIGQCKYD-VHLLPGDLSYADYMQH--RWDTFGELVQPLASARPWMVTQ 202 (378)
Q Consensus 137 ~~f~~~gD~~~~~-----------~~~~~~~~i~~~~~d-~vi~~GDl~~~~~~~~--~~~~~~~~~~~l~~~~P~~~v~ 202 (378)
++++.++|+|.-. .....++++.+.+++ +++.+||++....... ..+...+.++.+ -.-+.++
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l---~~d~~~~ 77 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNAL---GVDLACF 77 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhc---CCcEEee
Confidence 4678888886211 113456666667788 8999999986443211 112222333322 2346689
Q ss_pred CCCccCCCCcccchhhhchhcccCCC---C----CC-C--CCCCceEEEEeCCEE--EEEEcCcCCC------C---CcH
Q 017051 203 GNHEKESIPLIMDAFQSYNARWKMPF---E----ES-G--SNSNLYYSFDVAGAH--LIMLGSYADY------D---EYS 261 (378)
Q Consensus 203 GNHD~~~~~~~~~~~~~~~~~~~~p~---~----~~-~--~~~~~~ysf~~g~v~--fi~ldt~~~~------~---~~~ 261 (378)
||||+.... +.+....+....|. + .. . ..-..|..+..++++ |+++-+.... . ...
T Consensus 78 GNHefd~g~---~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~ 154 (257)
T cd07406 78 GNHEFDFGE---DQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYR 154 (257)
T ss_pred cccccccCH---HHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcceEc
Confidence 999995332 12222222111111 0 00 0 012467778888855 4555442110 0 012
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCC
Q 017051 262 DQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDP 341 (378)
Q Consensus 262 ~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~ 341 (378)
+-.+.+++.+++.++.+...+|++.|.+... ...+.+.+ .++|++|+||.|...... .
T Consensus 155 d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~------------d~~la~~~--~~iD~IlgGH~H~~~~~~--------~ 212 (257)
T cd07406 155 DYVETARELVDELREQGADLIIALTHMRLPN------------DKRLAREV--PEIDLILGGHDHEYILVQ--------V 212 (257)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEeccCchh------------hHHHHHhC--CCCceEEecccceeEeee--------E
Confidence 3334444444333334678899999997421 01222222 479999999999865221 2
Q ss_pred CccEEEEeCCCCCCCCcccc
Q 017051 342 CGAVYITIGDGGNKEGLARK 361 (378)
Q Consensus 342 ~g~~yiv~G~gG~~~~~~~~ 361 (378)
++++.+-+|+-|...+....
T Consensus 213 ~~t~vv~~g~~g~~vg~l~l 232 (257)
T cd07406 213 GGTPIVKSGSDFRTVYIITL 232 (257)
T ss_pred CCEEEEeCCcCcceEEEEEE
Confidence 46777777877776554443
No 55
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.90 E-value=1e-08 Score=90.75 Aligned_cols=191 Identities=15% Similarity=0.087 Sum_probs=95.2
Q ss_pred EEEcccCCCCChH---HHHHHhh-c---CCCcEEEeccccccccc--h---hhhHHH-HHHhhHhhhhCCceeecCCCCc
Q 017051 140 AVAGDLGQTGWTK---STLDHIG-Q---CKYDVHLLPGDLSYADY--M---QHRWDT-FGELVQPLASARPWMVTQGNHE 206 (378)
Q Consensus 140 ~~~gD~~~~~~~~---~~~~~i~-~---~~~d~vi~~GDl~~~~~--~---~~~~~~-~~~~~~~l~~~~P~~~v~GNHD 206 (378)
+++||+|.+.... .....+. . .++|.++++||+++.-. . ...... +....+......+++.++||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 4789999765422 2222322 2 58999999999996311 1 111111 2334444455699999999999
Q ss_pred cCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccC------CCCC
Q 017051 207 KESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDR------KKTP 280 (378)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~------~~~~ 280 (378)
..... . +........ .......+.+++.+++++-... ++.......|+...+..... .-..
T Consensus 81 ~~~~~-----~--~~~~~~~~~-----~~~~~~~~~~~g~~~~~~HG~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (217)
T cd07398 81 FLLGD-----F--FAEELGLIL-----LPDPLVHLELDGKRILLEHGDQ-FDTDDRAYQLLRRLGRNPYDQLLFLNRPLN 147 (217)
T ss_pred HHHHh-----H--HHHHcCCEE-----eccceEEEeeCCeEEEEECCCc-CchhHHHHHHHHHHhCcHHHHHHHhcchHH
Confidence 94211 1 111110000 0111215677888888886532 22223344444433211000 0000
Q ss_pred --eEEEEeccc----cccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEeCC
Q 017051 281 --WLLVLLHVP----WYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGD 351 (378)
Q Consensus 281 --~~iv~~H~P----~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~ 351 (378)
+.+...... ................+.+..++++++++++++||+|....... .+..|+.+|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~--------~~~~~~n~G~ 216 (217)
T cd07398 148 RRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHEL--------DGKLYINLGD 216 (217)
T ss_pred HHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEEE--------CCEEEEECCC
Confidence 000000000 00000000001123456667778889999999999998755431 3678888875
No 56
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.88 E-value=6.4e-08 Score=79.64 Aligned_cols=165 Identities=19% Similarity=0.241 Sum_probs=87.9
Q ss_pred CCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccchhhhchhcccCCCCCCCCCCCceEEE
Q 017051 162 KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSF 241 (378)
Q Consensus 162 ~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf 241 (378)
.-|.|+..||+..+-..++. +.=++.+..+. -.-+.+.||||+... . .....+.+ |.. . --..-.|
T Consensus 43 ~eDiVllpGDiSWaM~l~ea-~~Dl~~i~~LP--G~K~m~rGNHDYWw~-s----~skl~n~l--p~~--l--~~~n~~f 108 (230)
T COG1768 43 PEDIVLLPGDISWAMRLEEA-EEDLRFIGDLP--GTKYMIRGNHDYWWS-S----ISKLNNAL--PPI--L--FYLNNGF 108 (230)
T ss_pred hhhEEEecccchhheechhh-hhhhhhhhcCC--CcEEEEecCCccccc-h----HHHHHhhc--Cch--H--hhhccce
Confidence 34899999999865433221 11123444443 234679999999532 1 11111111 110 0 0011124
Q ss_pred EeCCEEEEEEcCc----CCCCCcHH--------HHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHH
Q 017051 242 DVAGAHLIMLGSY----ADYDEYSD--------QYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIME 309 (378)
Q Consensus 242 ~~g~v~fi~ldt~----~~~~~~~~--------Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~ 309 (378)
.++++.+++.-.+ .++....+ ...-|+..+.++-++...-.|||+|.|+++..... ..+.
T Consensus 109 ~l~n~aI~G~RgW~s~~~~~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~~t~--------~~~s 180 (230)
T COG1768 109 ELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDDGTP--------GPFS 180 (230)
T ss_pred eEeeEEEEEeecccCCCCCcCccchhHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCCCCC--------cchH
Confidence 5555444443221 11211122 22334442222223344558999999998765421 4567
Q ss_pred HHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEeCC
Q 017051 310 PLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGD 351 (378)
Q Consensus 310 ~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~ 351 (378)
+++++++|+.++.||.|.-.|-.+-. .+-.|+-|+.+.+
T Consensus 181 evlee~rv~~~lyGHlHgv~~p~~~~---s~v~Gi~y~Lvaa 219 (230)
T COG1768 181 EVLEEGRVSKCLYGHLHGVPRPNIGF---SNVRGIEYMLVAA 219 (230)
T ss_pred HHHhhcceeeEEeeeccCCCCCCCCc---ccccCceEEEEec
Confidence 88889999999999999877644311 2345888876653
No 57
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.85 E-value=1.2e-08 Score=87.30 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=35.1
Q ss_pred HHHHHhh-cCCCcEEEeccccccccch-hhhHHHHH-HhhHhhh-------------------hCCceeecCCCCccCC
Q 017051 153 STLDHIG-QCKYDVHLLPGDLSYADYM-QHRWDTFG-ELVQPLA-------------------SARPWMVTQGNHEKES 209 (378)
Q Consensus 153 ~~~~~i~-~~~~d~vi~~GDl~~~~~~-~~~~~~~~-~~~~~l~-------------------~~~P~~~v~GNHD~~~ 209 (378)
.+.+.+. ..+||.|+++||+.+..-. .++|.... ++.+.+. ..+|++.++||||...
T Consensus 34 ~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 34 HIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred HHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 3444443 6799999999999964211 34443322 2222121 1389999999999953
No 58
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.83 E-value=2.6e-07 Score=87.47 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=47.7
Q ss_pred eEEEEEcccCCCCCh-------------HHHHHHhhcCCCcEEEeccccccccch--hhhHHHHHH-hhHhhhh-CCcee
Q 017051 137 ITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYM--QHRWDTFGE-LVQPLAS-ARPWM 199 (378)
Q Consensus 137 ~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~-~~~~l~~-~~P~~ 199 (378)
+||+.+||+|.+... ..+++.+.+.+||+||++||+.+.... ......... +++.+.. .+|++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 589999999976421 223344458899999999999976422 122222222 2344433 59999
Q ss_pred ecCCCCccC
Q 017051 200 VTQGNHEKE 208 (378)
Q Consensus 200 ~v~GNHD~~ 208 (378)
.++||||..
T Consensus 81 ~I~GNHD~~ 89 (340)
T PHA02546 81 VLVGNHDMY 89 (340)
T ss_pred EEccCCCcc
Confidence 999999984
No 59
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.81 E-value=1.9e-07 Score=84.62 Aligned_cols=178 Identities=17% Similarity=0.143 Sum_probs=97.2
Q ss_pred EEEEcccCCCCChHHHHH---Hhh---cCCCcEEEeccccccccchh-----------hhHHHHHHhhHhhh-hCCceee
Q 017051 139 FAVAGDLGQTGWTKSTLD---HIG---QCKYDVHLLPGDLSYADYMQ-----------HRWDTFGELVQPLA-SARPWMV 200 (378)
Q Consensus 139 f~~~gD~~~~~~~~~~~~---~i~---~~~~d~vi~~GDl~~~~~~~-----------~~~~~~~~~~~~l~-~~~P~~~ 200 (378)
|++.||+|.. ...+.+ .++ ..++|++|++||+....... ..+..|...++... ..+|+++
T Consensus 1 i~v~Gd~HG~--~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~f 78 (262)
T cd00844 1 IAVEGCCHGE--LDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIF 78 (262)
T ss_pred CEEEecCCcc--HHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEE
Confidence 5789999853 344433 322 35799999999995322111 12233333333332 2477899
Q ss_pred cCCCCccCCCCcccchhhhchhcccCCCCCCCCCCCc-----eEEEEeCCEEEEEEcCcC---CCCC--------cHHHH
Q 017051 201 TQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNL-----YYSFDVAGAHLIMLGSYA---DYDE--------YSDQY 264 (378)
Q Consensus 201 v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-----~ysf~~g~v~fi~ldt~~---~~~~--------~~~Q~ 264 (378)
|.||||-.. .+.. ++..+ ....+. ...+.+++++|..|.... ++.. ...++
T Consensus 79 i~GNHE~~~------~l~~------l~~gg-~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~ 145 (262)
T cd00844 79 IGGNHEASN------YLWE------LPYGG-WVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTK 145 (262)
T ss_pred ECCCCCCHH------HHHh------hcCCC-eecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHH
Confidence 999999621 1111 11100 000122 234567899999997621 1111 12333
Q ss_pred HHHH-------HHhhhccCCCCCeEEEEeccccccCCCCCCC---------------CchHHHHHHHHHHHhcCCcEEEe
Q 017051 265 RWLK-------DDLSKVDRKKTPWLLVLLHVPWYNSNEAHQG---------------EGDGMMAIMEPLLYAASVDLVLA 322 (378)
Q Consensus 265 ~WL~-------~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~---------------~~~~~~~~l~~l~~~~~vdlvl~ 322 (378)
..+- ..|..... . --|+++|.||......... ........+..++++.++.++|+
T Consensus 146 rs~y~~r~~~~~kl~~~~~-~--vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~ 222 (262)
T cd00844 146 RSAYHVRNIEVFKLKQLKQ-P--IDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFS 222 (262)
T ss_pred HHhhhhhHHHHHHHHhcCC-C--CcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEE
Confidence 2210 11222211 2 3699999998765432110 00113467889999999999999
Q ss_pred cCccc-cceeecc
Q 017051 323 GHVHA-YERSIRV 334 (378)
Q Consensus 323 GH~H~-y~r~~~~ 334 (378)
||.|. |++..|.
T Consensus 223 gH~H~~f~~~~~~ 235 (262)
T cd00844 223 AHLHVKFAALVPH 235 (262)
T ss_pred ecCCcccceecCC
Confidence 99998 6666554
No 60
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.77 E-value=1.3e-07 Score=79.74 Aligned_cols=153 Identities=19% Similarity=0.204 Sum_probs=92.6
Q ss_pred eEEEEEcccCCCCC-hHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccc
Q 017051 137 ITFAVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMD 215 (378)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~ 215 (378)
++++++||+|.... .....+.....++|+|||+||.+..... ..+. .. + ..++++|.||.|.....
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~~-~~l~---~~---~--~~~i~~V~GN~D~~~~~---- 68 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFTL-DALE---GG---L--AAKLIAVRGNCDGEVDQ---- 68 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccch-HHhh---cc---c--ccceEEEEccCCCcccc----
Confidence 68999999997753 2344555567899999999999964432 1111 11 1 37899999999994210
Q ss_pred hhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCC
Q 017051 216 AFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNE 295 (378)
Q Consensus 216 ~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~ 295 (378)
-..|. .-.+.+++ .+|.+.|--.+....
T Consensus 69 --------~~~p~---------~~~~~~~g-----------------------------------~ki~l~HGh~~~~~~ 96 (172)
T COG0622 69 --------EELPE---------ELVLEVGG-----------------------------------VKIFLTHGHLYFVKT 96 (172)
T ss_pred --------ccCCh---------hHeEEECC-----------------------------------EEEEEECCCcccccc
Confidence 00110 00111111 267777753332111
Q ss_pred CCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEeCCCCCCCCccccccccccCceeccc
Q 017051 296 AHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKYVLTYRNIFELSN 374 (378)
Q Consensus 296 ~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~~~~~p~~~~~e~~~ 374 (378)
....+..+-++.++|+++.||+|...... .+|+++|..|+-..+.+. ....|.++++++
T Consensus 97 --------~~~~l~~la~~~~~Dvli~GHTH~p~~~~--------~~~i~~vNPGS~s~pr~~----~~~sy~il~~~~ 155 (172)
T COG0622 97 --------DLSLLEYLAKELGADVLIFGHTHKPVAEK--------VGGILLVNPGSVSGPRGG----NPASYAILDVDN 155 (172)
T ss_pred --------CHHHHHHHHHhcCCCEEEECCCCcccEEE--------ECCEEEEcCCCcCCCCCC----CCcEEEEEEcCC
Confidence 12455566677789999999999865544 257888988876544322 122667766654
No 61
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.75 E-value=7.3e-08 Score=93.20 Aligned_cols=73 Identities=23% Similarity=0.251 Sum_probs=53.6
Q ss_pred eEEEEEcccCCC-CC-------------hHHHHHHhhcCCCcEEEeccccccccch-hhhHHHHHHhhHhhhh-CCceee
Q 017051 137 ITFAVAGDLGQT-GW-------------TKSTLDHIGQCKYDVHLLPGDLSYADYM-QHRWDTFGELVQPLAS-ARPWMV 200 (378)
Q Consensus 137 ~~f~~~gD~~~~-~~-------------~~~~~~~i~~~~~d~vi~~GDl~~~~~~-~~~~~~~~~~~~~l~~-~~P~~~ 200 (378)
+||+..+|+|.+ .. ...+++.+.+.++||||++||+.+.... ...-..+.+.++.+.. .+|+++
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 589999999988 21 1235556678899999999999986554 2233445566666643 599999
Q ss_pred cCCCCccCC
Q 017051 201 TQGNHEKES 209 (378)
Q Consensus 201 v~GNHD~~~ 209 (378)
+.||||...
T Consensus 81 I~GNHD~~~ 89 (390)
T COG0420 81 IAGNHDSPS 89 (390)
T ss_pred ecCCCCchh
Confidence 999999953
No 62
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.75 E-value=4.1e-07 Score=84.15 Aligned_cols=213 Identities=16% Similarity=0.141 Sum_probs=107.0
Q ss_pred eEEEEEcccCCCCC---------------hHHHHHHhhcCCCc-EEEeccccccccchhhhH---HHHHHhhHhhhhCCc
Q 017051 137 ITFAVAGDLGQTGW---------------TKSTLDHIGQCKYD-VHLLPGDLSYADYMQHRW---DTFGELVQPLASARP 197 (378)
Q Consensus 137 ~~f~~~gD~~~~~~---------------~~~~~~~i~~~~~d-~vi~~GDl~~~~~~~~~~---~~~~~~~~~l~~~~P 197 (378)
++|+.++|+|..-. ....++++.+.+++ +++.+||++........+ +...+.+..+. +-
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g--~D 78 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMG--VD 78 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhC--Ce
Confidence 47888999973211 12345555555554 899999998644321111 11222222221 22
Q ss_pred eeecCCCCccCCCCcccchhhhchh----------------cccCCC---C----CC-CCCCCceEEEEeCCEE--EEEE
Q 017051 198 WMVTQGNHEKESIPLIMDAFQSYNA----------------RWKMPF---E----ES-GSNSNLYYSFDVAGAH--LIML 251 (378)
Q Consensus 198 ~~~v~GNHD~~~~~~~~~~~~~~~~----------------~~~~p~---~----~~-~~~~~~~ysf~~g~v~--fi~l 251 (378)
+.++||||++.... .+..+.+ .-..|. + .. ...-..|.-++.++++ ||++
T Consensus 79 -a~t~GNHefd~G~~---~l~~~~~~~~~~~~~~~~~~~~~~a~fp~l~aNv~~~~~~~~~~~py~i~~~~G~kIgviGl 154 (288)
T cd07412 79 -ASAVGNHEFDEGYA---ELLRRINGGCHPTTGCQAGYPFPGANFPYLAANVYDKGTGTPALPPYTIKDVGGVKVGFIGA 154 (288)
T ss_pred -eeeecccccccCHH---HHHHHHhccCCccccccccccCcCCCCCEEEEeEEecCCCCcccCCEEEEEECCEEEEEEee
Confidence 56889999964321 1111111 000111 0 00 0111345557788855 4555
Q ss_pred cCcCC-C--C-------CcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHh--cCCcE
Q 017051 252 GSYAD-Y--D-------EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYA--ASVDL 319 (378)
Q Consensus 252 dt~~~-~--~-------~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~--~~vdl 319 (378)
-+... . . ......+.+++.+++.+.++.+.+|+++|.............. .......++.+ -++|+
T Consensus 155 ~~~~~~~~~~~~~~~g~~f~d~~e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~~~~--~~~~~~~l~~~~~~~iD~ 232 (288)
T cd07412 155 VTKDTPNLVSPDGVAGLEFTDEVEAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDTCSA--ASGPIADIVNRLDPDVDV 232 (288)
T ss_pred cCCCccceeccccccCceEcCHHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCccccc--cChhHHHHHhhcCCCCCE
Confidence 32110 0 0 0122334455555554434677899999987653222110000 11122344444 37999
Q ss_pred EEecCccccceeecccCCCcCCCccEEEEeCCCCCCCCccccc
Q 017051 320 VLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLARKY 362 (378)
Q Consensus 320 vl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~~~ 362 (378)
+|+||.|...... . ...++++.+-+|+-|...+.....
T Consensus 233 IlgGHsH~~~~~~-~----~~~~~~~v~q~g~~g~~vg~i~l~ 270 (288)
T cd07412 233 VFAGHTHQAYNCT-V----PAGNPRLVTQAGSYGKAVADVDLT 270 (288)
T ss_pred EEeCccCcccccc-c----cCcCCEEEEecChhhceeEEEEEE
Confidence 9999999865321 1 112578888888888776655443
No 63
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.71 E-value=2.7e-07 Score=83.99 Aligned_cols=209 Identities=16% Similarity=0.151 Sum_probs=103.1
Q ss_pred eEEEEEcccCCCCC-----------hHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCC
Q 017051 137 ITFAVAGDLGQTGW-----------TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNH 205 (378)
Q Consensus 137 ~~f~~~gD~~~~~~-----------~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNH 205 (378)
++++.++|+|..-. ....++++++.++++++.+||++..... ..+..-...++.+...-.-+.++|||
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~~ln~~g~d~~~~GNH 79 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPI-SDLDKGETIIKIMNAVGYDAVTPGNH 79 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchh-hhhcCCcHHHHHHHhcCCcEEccccc
Confidence 47899999985311 1234455544467899999999864332 11111111222222222233578999
Q ss_pred ccCCCCcccchhhhchhcccCCCC-------CCCC-CCCceEEEEeC-C--EEEEEEcCcC-CC----C--C---cHHHH
Q 017051 206 EKESIPLIMDAFQSYNARWKMPFE-------ESGS-NSNLYYSFDVA-G--AHLIMLGSYA-DY----D--E---YSDQY 264 (378)
Q Consensus 206 D~~~~~~~~~~~~~~~~~~~~p~~-------~~~~-~~~~~ysf~~g-~--v~fi~ldt~~-~~----~--~---~~~Q~ 264 (378)
|+.... +.+..+.+.+..|.- ..+. .-..|.-++.+ + +-||++-+.. .. . . ..+-.
T Consensus 80 efd~G~---~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~d~~ 156 (257)
T cd07408 80 EFDYGL---DRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFEDPI 156 (257)
T ss_pred cccCCH---HHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccCCcEEecHH
Confidence 995332 233333333322220 0010 01234455677 6 4555554421 00 0 0 01222
Q ss_pred HHHHHH-hhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCc
Q 017051 265 RWLKDD-LSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCG 343 (378)
Q Consensus 265 ~WL~~~-L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g 343 (378)
+-+++. ....++++.+.+|++.|.+........ ....+.. .-.++|++|.||.|........ ..++
T Consensus 157 ~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~~------~~~~la~--~~~giDvIigGH~H~~~~~~~~-----~~~~ 223 (257)
T cd07408 157 EEAKKVIVAALKAKGADVIVALGHLGVDRTSSPW------TSTELAA--NVTGIDLIIDGHSHTTIEIGKK-----DGNN 223 (257)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCCc------cHHHHHH--hCCCceEEEeCCCcccccCccc-----ccCC
Confidence 333333 222222367789999998865432110 1122222 1248999999999986543210 1246
Q ss_pred cEEEEeCCCCCCCCccccc
Q 017051 344 AVYITIGDGGNKEGLARKY 362 (378)
Q Consensus 344 ~~yiv~G~gG~~~~~~~~~ 362 (378)
++.+-+|.-|...+.....
T Consensus 224 ~~ivq~g~~g~~vg~l~l~ 242 (257)
T cd07408 224 VLLTQTGAYLANIGEVTLV 242 (257)
T ss_pred eEEEcCChHHceEEEEEEE
Confidence 6666666666655544433
No 64
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.65 E-value=4.6e-07 Score=82.79 Aligned_cols=183 Identities=18% Similarity=0.151 Sum_probs=94.3
Q ss_pred HHHHHhhcC-CCcEE-EeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccchhhhchhcccCCC--
Q 017051 153 STLDHIGQC-KYDVH-LLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF-- 228 (378)
Q Consensus 153 ~~~~~i~~~-~~d~v-i~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~-- 228 (378)
..++++.+. ++|.+ +.+||+...... ..+......++.+ ...++.++.||||+.... +.+....+.+..|.
T Consensus 40 ~~v~~~~~~~~~~~l~l~~GD~~~gs~~-~~~~~g~~~~~~l-~~~g~da~~GNHefd~g~---~~l~~~~~~~~~~~l~ 114 (264)
T cd07411 40 TLIKRIRAERNPNTLLLDGGDTWQGSGE-ALYTRGQAMVDAL-NALGVDAMVGHWEFTYGP---ERVRELFGRLNWPFLA 114 (264)
T ss_pred HHHHHHHHhcCCCeEEEeCCCccCCChH-HhhcCChhHHHHH-HhhCCeEEecccccccCH---HHHHHHHhhCCCCEEE
Confidence 455666666 89977 579999965432 1121111222222 235666555999996432 22332333322221
Q ss_pred -C----CCC-CCCCceEEEEeCCE--EEEEEcCcCCCC-------C---cHHHHHHHHHHhhhcc-CCCCCeEEEEeccc
Q 017051 229 -E----ESG-SNSNLYYSFDVAGA--HLIMLGSYADYD-------E---YSDQYRWLKDDLSKVD-RKKTPWLLVLLHVP 289 (378)
Q Consensus 229 -~----~~~-~~~~~~ysf~~g~v--~fi~ldt~~~~~-------~---~~~Q~~WL~~~L~~~~-~~~~~~~iv~~H~P 289 (378)
+ ..+ ..-..|..++.+++ .+|++.+..... . .....+.+++.+.+.. ..+...+|++.|-+
T Consensus 115 aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iI~l~H~g 194 (264)
T cd07411 115 ANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRREEGVDVVVLLSHNG 194 (264)
T ss_pred EEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 0 000 01134556778875 455554421100 0 1233455555533332 23567899999987
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHh-cCCcEEEecCccccceeecccCCCcCCCccEEEEeCCCCCCCCccc
Q 017051 290 WYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDGGNKEGLAR 360 (378)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~-~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~~~~ 360 (378)
.... . .+.++ .++|++|+||.|..... |. ...++++.+-+|.-|..-+...
T Consensus 195 ~~~~------------~---~la~~~~~iDlilgGH~H~~~~~-~~----~~~~~t~v~~~g~~~~~vg~i~ 246 (264)
T cd07411 195 LPVD------------V---ELAERVPGIDVILSGHTHERTPK-PI----IAGGGTLVVEAGSHGKFLGRLD 246 (264)
T ss_pred chhh------------H---HHHhcCCCCcEEEeCcccccccC-cc----cccCCEEEEEcCccccEEEEEE
Confidence 4310 1 22223 47999999999974322 11 1125777787887776554443
No 65
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.60 E-value=4.2e-06 Score=75.64 Aligned_cols=186 Identities=16% Similarity=0.198 Sum_probs=103.3
Q ss_pred eEEEEEcccCCCCChH----HHHHHhh-cCCCcEEEeccccccccchhhhHHHHHHhhHhhhh-CCceeecCCCCccCCC
Q 017051 137 ITFAVAGDLGQTGWTK----STLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS-ARPWMVTQGNHEKESI 210 (378)
Q Consensus 137 ~~f~~~gD~~~~~~~~----~~~~~i~-~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~-~~P~~~v~GNHD~~~~ 210 (378)
+|++++||.= +.... ..+..++ +.++||+|..||.+-.+.. .. .. ..+.|.. .+-++.+ |||+++..
T Consensus 1 m~ilfiGDi~-G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~G-i~-~~---~~~~L~~~GvDviT~-GNH~~Dkg 73 (266)
T TIGR00282 1 IKFLFIGDVY-GKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKG-LT-LK---IYEFLKQSGVNYITM-GNHTWFQK 73 (266)
T ss_pred CeEEEEEecC-CHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCC-CC-HH---HHHHHHhcCCCEEEc-cchhccCc
Confidence 4799999982 32222 3444444 5678999999999854311 11 11 2222222 2666655 99999643
Q ss_pred CcccchhhhchhcccCCCCC-CCCCCCceEEEEeCCEEEEEEcCc--CCCCC--cHHHHHHHHHHhhhccCCCCCeEEEE
Q 017051 211 PLIMDAFQSYNARWKMPFEE-SGSNSNLYYSFDVAGAHLIMLGSY--ADYDE--YSDQYRWLKDDLSKVDRKKTPWLLVL 285 (378)
Q Consensus 211 ~~~~~~~~~~~~~~~~p~~~-~~~~~~~~ysf~~g~v~fi~ldt~--~~~~~--~~~Q~~WL~~~L~~~~~~~~~~~iv~ 285 (378)
.. ........ +.-.|.+- ....+..+..+..++.++-+++-. ..... ...-++-+++.+++.+. +++.+||.
T Consensus 74 e~-~~~i~~~~-~~lrpanyp~~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~i~~lk~-~~d~IIVd 150 (266)
T TIGR00282 74 LI-LDVVINQK-DLVRPLNFDTSFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLKELINMLKK-DCDLIFVD 150 (266)
T ss_pred HH-HHHHhccc-cccccCCCCCCCCCCCcEEEEECCEEEEEEECCCcccCCccccCCHHHHHHHHHHhhhc-CCCEEEEE
Confidence 11 00111111 11122221 112234566678887666555532 11111 12233445555555543 46789999
Q ss_pred eccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEe
Q 017051 286 LHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITI 349 (378)
Q Consensus 286 ~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~ 349 (378)
+|.-.. ..+.....+-+.+|++|+.-|+|.-.-...+. |+|+-||+-
T Consensus 151 ~Haeat------------sEK~a~~~~ldg~vsaVvGtHtHV~TaD~~il-----~~gtayitD 197 (266)
T TIGR00282 151 FHAETT------------SEKNAFGMAFDGYVTAVVGTHTHVPTADLRIL-----PKGTAYITD 197 (266)
T ss_pred eCCCCH------------HHHHHHHHHhCCCccEEEeCCCCCCCCcceeC-----CCCCEEEec
Confidence 997531 12455677788899999999999865444443 578888763
No 66
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.60 E-value=3.2e-06 Score=76.24 Aligned_cols=183 Identities=16% Similarity=0.185 Sum_probs=96.8
Q ss_pred EEEEEcccCCCCCh----HHHHHHhh-cCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCc
Q 017051 138 TFAVAGDLGQTGWT----KSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPL 212 (378)
Q Consensus 138 ~f~~~gD~~~~~~~----~~~~~~i~-~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~ 212 (378)
|++++||+ .+... ...+.+++ +.++||+|..||.+-.+.... ....+.+..+ .+-+ .+.|||+++..
T Consensus 1 ~ilfigdi-~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~--~~~~~~L~~~--G~D~-iTlGNH~fD~g-- 72 (255)
T cd07382 1 KILFIGDI-VGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGIT--PKIAKELLSA--GVDV-ITMGNHTWDKK-- 72 (255)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCC--HHHHHHHHhc--CCCE-EEecccccCcc--
Confidence 58899998 22222 23444444 567999999999986542111 1112222222 1444 45699999643
Q ss_pred ccchhhhchhcc---cCCCCCC-CCCCCceEEEEeCCEEEEEEcCc--CCCCCcHHHHHHHHHHhhhccCCCCCeEEEEe
Q 017051 213 IMDAFQSYNARW---KMPFEES-GSNSNLYYSFDVAGAHLIMLGSY--ADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLL 286 (378)
Q Consensus 213 ~~~~~~~~~~~~---~~p~~~~-~~~~~~~ysf~~g~v~fi~ldt~--~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~ 286 (378)
....+.+.. -.|.+-. ......|..++.+++++-+++-. ........-++-+++.+++.+. +.+.+||.+
T Consensus 73 ---el~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk~-~~D~IIV~~ 148 (255)
T cd07382 73 ---EILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELKE-EADIIFVDF 148 (255)
T ss_pred ---hHHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHhc-CCCEEEEEE
Confidence 122222222 1122211 11234577788887665554432 1111112234446666666544 567899999
Q ss_pred ccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEe
Q 017051 287 HVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITI 349 (378)
Q Consensus 287 H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~ 349 (378)
|.-..+ ....+.. .-..+||+++.||+|...-...+ -|+|+.|++.
T Consensus 149 H~g~ts-----------Ek~ala~-~ldg~VdvIvGtHTHv~t~d~~i-----l~~gTa~itd 194 (255)
T cd07382 149 HAEATS-----------EKIALGW-YLDGRVSAVVGTHTHVQTADERI-----LPGGTAYITD 194 (255)
T ss_pred CCCCCH-----------HHHHHHH-hCCCCceEEEeCCCCccCCccEE-----eeCCeEEEec
Confidence 985311 1122332 22336999999999985333322 2468887754
No 67
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.57 E-value=1.1e-06 Score=81.06 Aligned_cols=157 Identities=15% Similarity=0.198 Sum_probs=81.1
Q ss_pred HHHHHhhcCCCc-EEEeccccccccchhh--hHHHHHHhhHhhhhCCceeecCCCCccCCCCcccchhhhchhcccCCCC
Q 017051 153 STLDHIGQCKYD-VHLLPGDLSYADYMQH--RWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFE 229 (378)
Q Consensus 153 ~~~~~i~~~~~d-~vi~~GDl~~~~~~~~--~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~ 229 (378)
..++++.+.+++ +++.+||+........ ..+...+.+..+. .. +.++||||++.... .+..+.+....|.-
T Consensus 39 ~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~g--~D-~~~lGNHefd~G~~---~l~~~~~~~~~p~l 112 (281)
T cd07409 39 TLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLLG--YD-AMTLGNHEFDDGVE---GLAPFLNNLKFPVL 112 (281)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhcC--CC-EEEeccccccCCHH---HHHHHHHhCCCCEE
Confidence 345555556677 5566999986543211 1122222333221 33 45679999964322 22222222222210
Q ss_pred ------CC-----CCCCCceEEEEeCCEE--EEEEcCcCC--CC---C---cHHHHHHHHHHhhhccCCCCCeEEEEecc
Q 017051 230 ------ES-----GSNSNLYYSFDVAGAH--LIMLGSYAD--YD---E---YSDQYRWLKDDLSKVDRKKTPWLLVLLHV 288 (378)
Q Consensus 230 ------~~-----~~~~~~~ysf~~g~v~--fi~ldt~~~--~~---~---~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~ 288 (378)
.. ...-..|..++.++++ ||++-+... .. . ..+..+.+++.+++.+.++...+|++.|.
T Consensus 113 ~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~ 192 (281)
T cd07409 113 SANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIALSHS 192 (281)
T ss_pred EEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 00 0011345667888855 455543210 00 0 12344567776666554467789999998
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccc
Q 017051 289 PWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (378)
Q Consensus 289 P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 329 (378)
+... ...+.+.+ -++|++|+||.|...
T Consensus 193 G~~~------------d~~la~~~--~giD~IiggH~H~~~ 219 (281)
T cd07409 193 GYEV------------DKEIARKV--PGVDVIVGGHSHTFL 219 (281)
T ss_pred Cchh------------HHHHHHcC--CCCcEEEeCCcCccc
Confidence 7321 12222222 479999999999864
No 68
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.57 E-value=2.8e-07 Score=80.28 Aligned_cols=67 Identities=18% Similarity=0.107 Sum_probs=41.7
Q ss_pred EEcccCCCCChH----HHHHHhhc--CCCcEEEeccccccccchhhhHHHHH----HhhHhhhhC-CceeecCCCCcc
Q 017051 141 VAGDLGQTGWTK----STLDHIGQ--CKYDVHLLPGDLSYADYMQHRWDTFG----ELVQPLASA-RPWMVTQGNHEK 207 (378)
Q Consensus 141 ~~gD~~~~~~~~----~~~~~i~~--~~~d~vi~~GDl~~~~~~~~~~~~~~----~~~~~l~~~-~P~~~v~GNHD~ 207 (378)
++||.|.+.... -.++-+.. .+.|.+.++||+++.=-....|.+.. ..+..+..+ +|+++++||||+
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Df 79 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDF 79 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHH
Confidence 689999884322 23333433 35699999999985322122344332 233334444 999999999997
No 69
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.52 E-value=1.1e-06 Score=87.21 Aligned_cols=75 Identities=12% Similarity=0.221 Sum_probs=52.6
Q ss_pred CCCeEEEEEcccCCCCCh------HHHHHHhh---------cCCCcEEEeccccccccch-------------hhhHHHH
Q 017051 134 QFPITFAVAGDLGQTGWT------KSTLDHIG---------QCKYDVHLLPGDLSYADYM-------------QHRWDTF 185 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~------~~~~~~i~---------~~~~d~vi~~GDl~~~~~~-------------~~~~~~~ 185 (378)
..+.+++++||+|.+... +..++.+. ..+++.+|++||+++..+. ....+.+
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l 320 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAA 320 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHH
Confidence 457899999999976531 23344444 5679999999999964221 0122345
Q ss_pred HHhhHhhhhCCceeecCCCCccC
Q 017051 186 GELVQPLASARPWMVTQGNHEKE 208 (378)
Q Consensus 186 ~~~~~~l~~~~P~~~v~GNHD~~ 208 (378)
.+.++.+...+|+++++||||..
T Consensus 321 ~~~L~~L~~~i~V~~ipGNHD~~ 343 (504)
T PRK04036 321 AEYLKQIPEDIKIIISPGNHDAV 343 (504)
T ss_pred HHHHHhhhcCCeEEEecCCCcch
Confidence 55667776678999999999984
No 70
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=98.51 E-value=2.9e-07 Score=80.92 Aligned_cols=64 Identities=23% Similarity=0.200 Sum_probs=41.7
Q ss_pred EEEEEcccCCCCC-hHHHHHHhh-cCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccC
Q 017051 138 TFAVAGDLGQTGW-TKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (378)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~-~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 208 (378)
|++++||+|.... ..++++.+. ..++|.++++||+++.+.... +.++.+.. .+++++.||||..
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~------~~~~~l~~-~~~~~v~GNhe~~ 67 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESL------ACLELLLE-PWFHAVRGNHEQM 67 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHH------HHHHHHhc-CCEEEeECCChHH
Confidence 6899999985421 233444443 246899999999997654321 22232322 4688999999983
No 71
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.48 E-value=2.3e-07 Score=81.51 Aligned_cols=166 Identities=16% Similarity=0.077 Sum_probs=81.8
Q ss_pred EEEcccCCCCC-hHHHHHHhh--------cCCCcEEEeccccccccchhh-hHHHHHHhhHhh-hhCCceeecCCCCccC
Q 017051 140 AVAGDLGQTGW-TKSTLDHIG--------QCKYDVHLLPGDLSYADYMQH-RWDTFGELVQPL-ASARPWMVTQGNHEKE 208 (378)
Q Consensus 140 ~~~gD~~~~~~-~~~~~~~i~--------~~~~d~vi~~GDl~~~~~~~~-~~~~~~~~~~~l-~~~~P~~~v~GNHD~~ 208 (378)
+++||+|.... ..++++.+. ..+.|.++++||+++.+.... ..+.+.+..... ....+++.++||||..
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 47999986632 334454443 246899999999998655322 222222222111 1236899999999984
Q ss_pred CCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEecc
Q 017051 209 SIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHV 288 (378)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~ 288 (378)
.... . + ++..+. ....+. .........+.......+||++.-..... + .+++.|.
T Consensus 81 ~l~~----~--~--~~~~~~--------~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~lP~~~~~-~---~~~fvHa 135 (208)
T cd07425 81 NLCG----D--F--RYVHPK--------YFNEFG-----GLAMRRRELFSPGGELGRWLRSKPVIVKV-N---DTLFVHG 135 (208)
T ss_pred HHcc----h--h--ccCChh--------HHHHHH-----hhhhhHHHhcCCccHHHHHHHhCCeEEEE-C---CEEEEeC
Confidence 2110 0 0 000010 000000 00000011112233457888765333322 1 2566787
Q ss_pred ccccCC--CCCCCCch--HHHHHHHHHHHhcCCcEEEecCccccce
Q 017051 289 PWYNSN--EAHQGEGD--GMMAIMEPLLYAASVDLVLAGHVHAYER 330 (378)
Q Consensus 289 P~~~~~--~~~~~~~~--~~~~~l~~l~~~~~vdlvl~GH~H~y~r 330 (378)
.+-... ........ .....+..+|+.++.+++++||+|....
T Consensus 136 g~~~~w~r~y~~~~~~~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~ 181 (208)
T cd07425 136 GLGPLWYRGYSKETSDKECAAAHLDKVLERLGAKRMVVGHTPQEGG 181 (208)
T ss_pred CcHHHHhhHhhhhhhhccchHHHHHHHHHHcCCCeEEEcCeeeecC
Confidence 541110 00000000 0112577889999999999999998543
No 72
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.48 E-value=1.4e-06 Score=82.16 Aligned_cols=113 Identities=19% Similarity=0.166 Sum_probs=73.7
Q ss_pred CCCeEEEEEcccCCCCCh------------------HHHHHHh-hcCCCcEEEeccccccccch--hhhHHHHHHhhHhh
Q 017051 134 QFPITFAVAGDLGQTGWT------------------KSTLDHI-GQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPL 192 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~------------------~~~~~~i-~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~~~~~l 192 (378)
...++++.++|+|.-+.. ......+ ...+||.++++||+.+++.. .++|.+..+.++++
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkI 125 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKI 125 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHh
Confidence 578999999999865411 1122222 26799999999999986544 56676544445544
Q ss_pred hh---CCceeecCCCCccCCCCcccchhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcC
Q 017051 193 AS---ARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYA 255 (378)
Q Consensus 193 ~~---~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~ 255 (378)
.. .+|++.++||||.+.... .......+|..-. ++....|++|+..|+++|+..
T Consensus 126 f~~k~~~~~~~i~GNhDIGf~~~---~~~~~i~Rfe~~f------g~~~r~f~v~~~tf~~~d~~~ 182 (410)
T KOG3662|consen 126 FGRKGNIKVIYIAGNHDIGFGNE---LIPEWIDRFESVF------GPTERRFDVGNLTFVMFDSNA 182 (410)
T ss_pred hCCCCCCeeEEeCCccccccccc---cchhHHHHHHHhh------cchhhhhccCCceeEEeeehh
Confidence 33 499999999999964332 1122223332111 235667899999999999864
No 73
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=4.7e-07 Score=82.09 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=50.9
Q ss_pred eEEEEEcccCCCCCh-------------HHHHHHhhcCCCcEEEeccccccccchh-hhHHHHHHhhHhhhh-C-Cceee
Q 017051 137 ITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYMQ-HRWDTFGELVQPLAS-A-RPWMV 200 (378)
Q Consensus 137 ~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vi~~GDl~~~~~~~-~~~~~~~~~~~~l~~-~-~P~~~ 200 (378)
+||+.++|+|.+... ..+++.+.+.++|+||++||+.+..... .....+.+.++.+.. . +|+++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 589999999976421 2344445578999999999999865432 223344556666644 3 89999
Q ss_pred cCCCCccC
Q 017051 201 TQGNHEKE 208 (378)
Q Consensus 201 v~GNHD~~ 208 (378)
++||||..
T Consensus 81 i~GNHD~~ 88 (253)
T TIGR00619 81 ISGNHDSA 88 (253)
T ss_pred EccCCCCh
Confidence 99999984
No 74
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.45 E-value=2.2e-05 Score=72.15 Aligned_cols=201 Identities=18% Similarity=0.224 Sum_probs=99.7
Q ss_pred CCeEEEEEcccCCCCC--------------hHHHHHHhh----cCCCc-EEEeccccccccchhh----hHHHHHHhhHh
Q 017051 135 FPITFAVAGDLGQTGW--------------TKSTLDHIG----QCKYD-VHLLPGDLSYADYMQH----RWDTFGELVQP 191 (378)
Q Consensus 135 ~~~~f~~~gD~~~~~~--------------~~~~~~~i~----~~~~d-~vi~~GDl~~~~~~~~----~~~~~~~~~~~ 191 (378)
.+++|+..+|+|..-. ..+.++++. +.+++ +++.+||+........ .+....+.
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~--- 80 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPI--- 80 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHH---
Confidence 4689999999984311 022233332 34555 6778999986543211 22222222
Q ss_pred hhhCCce-eecCCCCccCCCCcccchhhhchhcccCCC---C---CC---C--CCCCceEEEEeC-CEE--EEEEcCcCC
Q 017051 192 LASARPW-MVTQGNHEKESIPLIMDAFQSYNARWKMPF---E---ES---G--SNSNLYYSFDVA-GAH--LIMLGSYAD 256 (378)
Q Consensus 192 l~~~~P~-~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~---~---~~---~--~~~~~~ysf~~g-~v~--fi~ldt~~~ 256 (378)
+..+++ ..++||||++......+.+..+.+....|. | .. . .....|..+..+ +++ +|++-+...
T Consensus 81 -mN~mgyDa~tlGNHEFd~g~~~l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGltt~~~ 159 (282)
T cd07407 81 -FRMMPYDLLTIGNHELYNYEVADDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFLFDFK 159 (282)
T ss_pred -HHhcCCcEEeecccccCccccHHHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEecccc
Confidence 333343 468999999533211011111212111121 0 00 0 011235556765 655 555533211
Q ss_pred -------CCCcHHHH--HHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhc-CCc-EEEecCc
Q 017051 257 -------YDEYSDQY--RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVD-LVLAGHV 325 (378)
Q Consensus 257 -------~~~~~~Q~--~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~vd-lvl~GH~ 325 (378)
+....+.. +|+.+.|++ ++.+.+|+++|....... . ..+....+.++. ++| ++|+||+
T Consensus 160 ~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~-----~---~~~~~~~la~~~~~id~~Ii~GHs 228 (282)
T cd07407 160 GAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDA-----E---FKVLHDAIRKIFPDTPIQFLGGHS 228 (282)
T ss_pred cCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCc-----c---HHHHHHHHHHhCCCCCEEEEeCCc
Confidence 11112222 477777764 256779999999864321 0 111112233344 567 7999999
Q ss_pred cccceeecccCCCcCCCccEEEEeCCCCCCCC
Q 017051 326 HAYERSIRVNNGKPDPCGAVYITIGDGGNKEG 357 (378)
Q Consensus 326 H~y~r~~~~~~~~~~~~g~~yiv~G~gG~~~~ 357 (378)
|...... + .+++..+-+|.-|...|
T Consensus 229 H~~~~~~-~------~~~~~ivq~G~~g~~lg 253 (282)
T cd07407 229 HVRDFTQ-Y------DSSSTGLESGRYLETVG 253 (282)
T ss_pred cccccee-c------cCcEEEEeccchhhceE
Confidence 9753321 1 14666676676665544
No 75
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.45 E-value=6.9e-06 Score=74.12 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=46.2
Q ss_pred EEEcccCCCCCh------HHHHHHhhcC-----CCcEEEeccccccccch-------------hhhHHHHHHhhHhhhhC
Q 017051 140 AVAGDLGQTGWT------KSTLDHIGQC-----KYDVHLLPGDLSYADYM-------------QHRWDTFGELVQPLASA 195 (378)
Q Consensus 140 ~~~gD~~~~~~~------~~~~~~i~~~-----~~d~vi~~GDl~~~~~~-------------~~~~~~~~~~~~~l~~~ 195 (378)
+++||+|.+... +..++.+... ++|.||++||+++.... ...+..+.+.++.+...
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 678999975431 2233334332 57999999999975210 11234455666777667
Q ss_pred CceeecCCCCccC
Q 017051 196 RPWMVTQGNHEKE 208 (378)
Q Consensus 196 ~P~~~v~GNHD~~ 208 (378)
+|+++++||||..
T Consensus 82 ~~v~~ipGNHD~~ 94 (243)
T cd07386 82 IKIIIIPGNHDAV 94 (243)
T ss_pred CeEEEeCCCCCcc
Confidence 9999999999984
No 76
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.41 E-value=4.8e-06 Score=91.03 Aligned_cols=204 Identities=17% Similarity=0.192 Sum_probs=104.9
Q ss_pred CCeEEEEEcccCCCC----ChHHHHHHhhcCCCcEEEe-ccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCC
Q 017051 135 FPITFAVAGDLGQTG----WTKSTLDHIGQCKYDVHLL-PGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKES 209 (378)
Q Consensus 135 ~~~~f~~~gD~~~~~----~~~~~~~~i~~~~~d~vi~-~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~ 209 (378)
.+++|+.++|+|..- +....++++.+.+|+.+++ +||++..... ..+......++.+..--.-+.++||||+..
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~-~~~~~g~~~~~~ln~lg~d~~~~GNHEfd~ 737 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLY-SNLLKGLPVLKMMKEMGYDASTFGNHEFDW 737 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcch-hhhcCChHHHHHHhCcCCCEEEeccccccc
Confidence 459999999998432 1234566666778888766 9999865432 111111112222222123356999999954
Q ss_pred CCcccchhhhchhccc------------CCC---C----CCCC---CCCceEEEEeCCEE--EEEEcCcC-C-C---C--
Q 017051 210 IPLIMDAFQSYNARWK------------MPF---E----ESGS---NSNLYYSFDVAGAH--LIMLGSYA-D-Y---D-- 258 (378)
Q Consensus 210 ~~~~~~~~~~~~~~~~------------~p~---~----~~~~---~~~~~ysf~~g~v~--fi~ldt~~-~-~---~-- 258 (378)
... .+..+...-. .|. | ..+. .-..|.-++.++++ ||++-+.. . . .
T Consensus 738 g~~---~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~~ 814 (1163)
T PRK09419 738 GPD---VLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGNV 814 (1163)
T ss_pred ChH---HHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCCCc
Confidence 321 1111111100 111 0 0111 11345666788754 55554321 0 0 0
Q ss_pred ---CcHHHHHHHHHHhhhcc-CCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhc-CCcEEEecCccccceeec
Q 017051 259 ---EYSDQYRWLKDDLSKVD-RKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYERSIR 333 (378)
Q Consensus 259 ---~~~~Q~~WL~~~L~~~~-~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~r~~~ 333 (378)
.-.+..+.+++..++.+ .++...+|+++|......... +. ....++.++. +||++|.||+|..-...
T Consensus 815 ~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~--~~-----~~~~~lA~~v~gIDvIigGHsH~~~~~~- 886 (1163)
T PRK09419 815 KNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT--GE-----ITGLELAKKVKGVDAIISAHTHTLVDKV- 886 (1163)
T ss_pred CCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc--cc-----cHHHHHHHhCCCCCEEEeCCCCcccccc-
Confidence 01233344444444443 236778999999986532211 11 1233444443 79999999999753211
Q ss_pred ccCCCcCCCccEEEEeCCCCCCCC
Q 017051 334 VNNGKPDPCGAVYITIGDGGNKEG 357 (378)
Q Consensus 334 ~~~~~~~~~g~~yiv~G~gG~~~~ 357 (378)
.++++.+-+|+-|...+
T Consensus 887 -------v~~~~ivqag~~g~~vg 903 (1163)
T PRK09419 887 -------VNGTPVVQAYKYGRALG 903 (1163)
T ss_pred -------CCCEEEEeCChhHcEEE
Confidence 14566666666665433
No 77
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=98.37 E-value=1.1e-06 Score=77.97 Aligned_cols=73 Identities=21% Similarity=0.111 Sum_probs=46.7
Q ss_pred EECCCCCCCeEEEEEcccCCCC-ChHHHHHHhhc-CCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCC
Q 017051 128 FKTPPAQFPITFAVAGDLGQTG-WTKSTLDHIGQ-CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNH 205 (378)
Q Consensus 128 F~t~p~~~~~~f~~~gD~~~~~-~~~~~~~~i~~-~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNH 205 (378)
|+..+.+.--|++++||+|... ...++++.+.. .+.|-++++||+++.+....+ .++-+.. ..+..+.|||
T Consensus 8 ~~~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~------vl~~l~~-~~~~~v~GNH 80 (218)
T PRK11439 8 YQRIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLR------CLQLLEE-HWVRAVRGNH 80 (218)
T ss_pred eecccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHH------HHHHHHc-CCceEeeCch
Confidence 4444433334899999998653 23456666653 368999999999986653221 2222222 3467899999
Q ss_pred cc
Q 017051 206 EK 207 (378)
Q Consensus 206 D~ 207 (378)
|.
T Consensus 81 E~ 82 (218)
T PRK11439 81 EQ 82 (218)
T ss_pred HH
Confidence 97
No 78
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.36 E-value=1.5e-05 Score=73.70 Aligned_cols=184 Identities=21% Similarity=0.232 Sum_probs=86.9
Q ss_pred eEEEEEcccCCCCC-----------hHHHHHHhhc-----CCCcEEEeccccccccchhhhH---HHHHHhhHhhhhCCc
Q 017051 137 ITFAVAGDLGQTGW-----------TKSTLDHIGQ-----CKYDVHLLPGDLSYADYMQHRW---DTFGELVQPLASARP 197 (378)
Q Consensus 137 ~~f~~~gD~~~~~~-----------~~~~~~~i~~-----~~~d~vi~~GDl~~~~~~~~~~---~~~~~~~~~l~~~~P 197 (378)
++++..+|+|..-. ....++++++ ...-+++.+||+...... ..+ ....+.+..+. .-
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~-~~~~~g~~~~~~~n~~g--~D 77 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPE-SDLQDAEPDFRGMNLVG--YD 77 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchh-HHhcCcchHHHHHHhhC--Cc
Confidence 47888999975421 1234455443 233588999999853322 111 11112222221 23
Q ss_pred eeecCCCCccCCCCcccchhhhchhcccCCC---C---CCC-CCCCceEEEEeCCEEE--EEEcCcC-CC--C----Cc-
Q 017051 198 WMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E---ESG-SNSNLYYSFDVAGAHL--IMLGSYA-DY--D----EY- 260 (378)
Q Consensus 198 ~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~---~---~~~-~~~~~~ysf~~g~v~f--i~ldt~~-~~--~----~~- 260 (378)
..++||||++.... .+....+....|. + ..+ .....|.-++.+++++ |++-+.. .. . .+
T Consensus 78 -a~~~GNHEfD~G~~---~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~~~~~~~~~~~~~~~~ 153 (285)
T cd07405 78 -AMAVGNHEFDNPLE---VLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTTDDTAKIGNPAYFEGI 153 (285)
T ss_pred -EEeecccccccCHH---HHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEecccccccccCcCCcCCc
Confidence 44779999964322 2222111111111 0 001 1123466677887664 4443311 00 0 00
Q ss_pred --HHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccc
Q 017051 261 --SDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (378)
Q Consensus 261 --~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 329 (378)
.+..+=+++.+++.+.++...+|+++|......... .........+.+.+...++|++|.||.|...
T Consensus 154 ~f~d~~~~~~~~v~~lk~~~~D~VI~lsH~G~~~~~~~--~~~~~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 154 EFRPPIHEAKEVVPELKQEKPDIVIAATHMGHYDNGEH--GSNAPGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred EEcCHHHHHHHHHHHHHHcCCCEEEEEecccccCCccc--cccCchHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 112222333333332235678999999987532211 1100111233333333589999999999854
No 79
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=98.35 E-value=1.5e-06 Score=71.83 Aligned_cols=119 Identities=17% Similarity=0.111 Sum_probs=75.5
Q ss_pred EEEcccCCCCChHHHHHHhh-----cCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCccc
Q 017051 140 AVAGDLGQTGWTKSTLDHIG-----QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIM 214 (378)
Q Consensus 140 ~~~gD~~~~~~~~~~~~~i~-----~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~ 214 (378)
+++||.+.. .++++++++ +.+.|++|++||+.-.......|..+..-. ....+|.|++-|||+
T Consensus 1 LV~G~~~G~--l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g~--~~~pipTyf~ggn~~-------- 68 (150)
T cd07380 1 LVCGDVNGR--LKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDGS--KKVPIPTYFLGGNNP-------- 68 (150)
T ss_pred CeeecCCcc--HHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcCC--ccCCCCEEEECCCCC--------
Confidence 367887643 344555442 456899999999986544333344433322 223489999999996
Q ss_pred chhhhchhcccCCCCCCCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCC
Q 017051 215 DAFQSYNARWKMPFEESGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSN 294 (378)
Q Consensus 215 ~~~~~~~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~ 294 (378)
+.-|+++|.|++...
T Consensus 69 -----------------------------------------------------------------~~DILlTh~wP~gi~ 83 (150)
T cd07380 69 -----------------------------------------------------------------GVDILLTSEWPKGIS 83 (150)
T ss_pred -----------------------------------------------------------------CCCEEECCCCchhhh
Confidence 225888888886643
Q ss_pred CCCC-----CCchHHHHHHHHHHHhcCCcEEEecCccc-cceeecccC
Q 017051 295 EAHQ-----GEGDGMMAIMEPLLYAASVDLVLAGHVHA-YERSIRVNN 336 (378)
Q Consensus 295 ~~~~-----~~~~~~~~~l~~l~~~~~vdlvl~GH~H~-y~r~~~~~~ 336 (378)
.... .........+.+++++.++.+.||||.|. |+| .|..+
T Consensus 84 ~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer-~Pf~~ 130 (150)
T cd07380 84 KLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGVFYER-EPYRN 130 (150)
T ss_pred hhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCceEee-cCccC
Confidence 2110 01112347778889999999999999995 555 45543
No 80
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.34 E-value=9.3e-07 Score=75.03 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=29.0
Q ss_pred CCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccC
Q 017051 161 CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (378)
Q Consensus 161 ~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 208 (378)
.++|.||++||++........ .+.++.+ ..|++.|+||||..
T Consensus 41 ~~~d~vi~~GDl~~~~~~~~~----~~~l~~~--~~~~~~v~GNHD~~ 82 (168)
T cd07390 41 GPDDTVYHLGDFSFGGKAGTE----LELLSRL--NGRKHLIKGNHDSS 82 (168)
T ss_pred CCCCEEEEeCCCCCCCChHHH----HHHHHhC--CCCeEEEeCCCCch
Confidence 368999999999975543221 2233333 26899999999983
No 81
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.34 E-value=1.3e-06 Score=84.52 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=49.5
Q ss_pred eEEEEEcccCCCCCh-------------HHHHHHhhcCCCcEEEeccccccccchhhh-HHHHHHhhHhhhh-CCceeec
Q 017051 137 ITFAVAGDLGQTGWT-------------KSTLDHIGQCKYDVHLLPGDLSYADYMQHR-WDTFGELVQPLAS-ARPWMVT 201 (378)
Q Consensus 137 ~~f~~~gD~~~~~~~-------------~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~-~~~~~~~~~~l~~-~~P~~~v 201 (378)
+||+.++|+|.+... ..+++.+.+.+||+||++||+.+....... ...+.+++..+.. .+|++++
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I 80 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVL 80 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 589999999986321 123444568899999999999976443221 1233444455543 3899999
Q ss_pred CCCCccC
Q 017051 202 QGNHEKE 208 (378)
Q Consensus 202 ~GNHD~~ 208 (378)
+||||..
T Consensus 81 ~GNHD~~ 87 (407)
T PRK10966 81 AGNHDSV 87 (407)
T ss_pred cCCCCCh
Confidence 9999984
No 82
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=98.34 E-value=3.2e-06 Score=74.84 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=42.6
Q ss_pred eEEEEEcccCCCC-ChHHHHHHhh-cCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCcc
Q 017051 137 ITFAVAGDLGQTG-WTKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (378)
Q Consensus 137 ~~f~~~gD~~~~~-~~~~~~~~i~-~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 207 (378)
-|++++||+|... ..+++++.+. ..+.|.++++||+++.+....+ .++.+.. ..++.+.||||.
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~------~l~~l~~-~~~~~v~GNHE~ 80 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLN------VLRLLNQ-PWFISVKGNHEA 80 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHH------HHHHHhh-CCcEEEECchHH
Confidence 4899999998653 2344555554 4578999999999986553221 2222222 356789999997
No 83
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.23 E-value=4.1e-05 Score=71.50 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=25.5
Q ss_pred CCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhc-CCcEEEecCccccc
Q 017051 278 KTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYE 329 (378)
Q Consensus 278 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~ 329 (378)
+...+|+++|..-+. . + ..+.++. ++|++|.||+|..-
T Consensus 207 gvD~II~LsH~g~~~-------~-d------~~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 207 GINKIILLSHLQQIS-------I-E------QALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCEEEEEecccccc-------h-H------HHHHhcCCCCCEEEeCCCCccC
Confidence 567799999984211 0 0 1234443 79999999999863
No 84
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.21 E-value=2.8e-05 Score=78.07 Aligned_cols=213 Identities=17% Similarity=0.162 Sum_probs=112.9
Q ss_pred CCCeEEEEEcccCCCCC------------h----HHHHHHhhcC-CCcEEEeccccccccchhhh---HHHHHHhhHhhh
Q 017051 134 QFPITFAVAGDLGQTGW------------T----KSTLDHIGQC-KYDVHLLPGDLSYADYMQHR---WDTFGELVQPLA 193 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~------------~----~~~~~~i~~~-~~d~vi~~GDl~~~~~~~~~---~~~~~~~~~~l~ 193 (378)
...++|+..+|+|..-. . ...++++.+. +..++|.+||+......... .+...+.+..+
T Consensus 24 ~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m- 102 (517)
T COG0737 24 TVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNAL- 102 (517)
T ss_pred ceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhc-
Confidence 56799999999975432 1 1234444433 45679999999976443221 11222233322
Q ss_pred hCCceeecCCCCccCCCCcccchhhhchhcccCCC---C---C---CCCCCCceEEEEeCCE--EEEEEcCc--CCC---
Q 017051 194 SARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E---E---SGSNSNLYYSFDVAGA--HLIMLGSY--ADY--- 257 (378)
Q Consensus 194 ~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~---~---~---~~~~~~~~ysf~~g~v--~fi~ldt~--~~~--- 257 (378)
-.=..+.||||+..... .+..+.+....|. | . ....-..|.-++.+++ -+|++.+. ..+
T Consensus 103 --~yDa~tiGNHEFd~g~~---~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~ 177 (517)
T COG0737 103 --GYDAMTLGNHEFDYGLE---ALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKP 177 (517)
T ss_pred --CCcEEeecccccccCHH---HHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccccccc
Confidence 23356999999964321 2333333322331 0 1 0111256778888874 45665541 111
Q ss_pred C-----CcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceee
Q 017051 258 D-----EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (378)
Q Consensus 258 ~-----~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 332 (378)
. .-....+++++.+.+.+.++...+|+++|.+............. .... .. .++|+++.||.|.+--..
T Consensus 178 ~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~~~-~~~~----~~-~~iD~i~~GH~H~~~~~~ 251 (517)
T COG0737 178 NAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEVPG-DVDV----AV-PGIDLIIGGHSHTVFPGG 251 (517)
T ss_pred cccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccccccc-cccc----cc-cCcceEeccCCcccccCC
Confidence 1 11355677777777765534678999999987644321111000 0000 00 449999999999642111
Q ss_pred cccCCCcCCCccEEEEeCCCCCCCCcccc
Q 017051 333 RVNNGKPDPCGAVYITIGDGGNKEGLARK 361 (378)
Q Consensus 333 ~~~~~~~~~~g~~yiv~G~gG~~~~~~~~ 361 (378)
. . ....+++..+-+|..|...|....
T Consensus 252 ~-~--~~~~~~t~ivqag~~gk~vG~~di 277 (517)
T COG0737 252 D-K--PGTVNGTPIVQAGEYGKYVGVLDI 277 (517)
T ss_pred c-c--cCccCCEEEEccChhhCceeEEEE
Confidence 1 0 011246666777777776554443
No 85
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.06 E-value=9.4e-05 Score=74.82 Aligned_cols=186 Identities=20% Similarity=0.227 Sum_probs=88.9
Q ss_pred CCCeEEEEEcccCCCCC--------h---HHHHHHhhc-----CCCcEEEeccccccccchhhhH---HHHHHhhHhhhh
Q 017051 134 QFPITFAVAGDLGQTGW--------T---KSTLDHIGQ-----CKYDVHLLPGDLSYADYMQHRW---DTFGELVQPLAS 194 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~--------~---~~~~~~i~~-----~~~d~vi~~GDl~~~~~~~~~~---~~~~~~~~~l~~ 194 (378)
...++|+.++|+|..-. . ...++++.+ ...-+++.+||+...... ..+ ....+.+..+
T Consensus 32 ~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~-s~~~~g~~~i~~mN~~-- 108 (551)
T PRK09558 32 TYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPE-SDLQDAEPDFRGMNLI-- 108 (551)
T ss_pred ceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEh-hhhcCCchhHHHHhcC--
Confidence 34689999999986421 1 123444432 233578999999864321 111 1111222222
Q ss_pred CCceeecCCCCccCCCCcccchhhhchhcccCCC---C----CCC-CCCCceEEEEeCCEE--EEEEcCcCC--C-CC--
Q 017051 195 ARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E----ESG-SNSNLYYSFDVAGAH--LIMLGSYAD--Y-DE-- 259 (378)
Q Consensus 195 ~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~---~----~~~-~~~~~~ysf~~g~v~--fi~ldt~~~--~-~~-- 259 (378)
-.=+.++||||++.... .+..+......|. | ..+ ..-..|.-++.++++ ||++-+... + ..
T Consensus 109 -g~Da~tlGNHEFD~G~~---~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~~ 184 (551)
T PRK09558 109 -GYDAMAVGNHEFDNPLS---VLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIGNPEY 184 (551)
T ss_pred -CCCEEcccccccCcCHH---HHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEeccccccccCCCC
Confidence 22245779999964422 2222222111121 0 001 112346667888855 455533110 0 00
Q ss_pred -----cHHHHHHHHHHhhhccC-CCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCcccc
Q 017051 260 -----YSDQYRWLKDDLSKVDR-KKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (378)
Q Consensus 260 -----~~~Q~~WL~~~L~~~~~-~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y 328 (378)
-.+..+-+++.+++.+. .+...+|+++|.......... ........+.+-+...+||++|.||.|..
T Consensus 185 ~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~--~~~~~d~~la~~~~~~~IDvIlgGHsH~~ 257 (551)
T PRK09558 185 FTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHG--SNAPGDVEMARSLPAGGLDMIVGGHSQDP 257 (551)
T ss_pred cCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccC--CCCccHHHHHHhCCccCceEEEeCCCCcc
Confidence 01222334444433331 367789999998875322110 00001122222222337999999999975
No 86
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.98 E-value=0.00016 Score=72.92 Aligned_cols=157 Identities=13% Similarity=0.134 Sum_probs=75.8
Q ss_pred HHHHhhcCCC-cEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccchhhhchhcccCCC---C
Q 017051 154 TLDHIGQCKY-DVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E 229 (378)
Q Consensus 154 ~~~~i~~~~~-d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~---~ 229 (378)
.++++.+..+ -+++.+||+...... ..+..-...++.+..---=+.++||||++.... .+..+.+....|. |
T Consensus 40 ~i~~~r~~~~n~l~ldaGD~~~gs~~-~~~~~g~~~i~~~N~~g~Da~~lGNHEFd~G~~---~l~~~~~~~~fp~l~aN 115 (550)
T TIGR01530 40 EINKLRAESKNALVLHAGDAIIGTLY-FTLFGGRADAALMNAAGFDFFTLGNHEFDAGNE---GLKEFLEPLEIPVLSAN 115 (550)
T ss_pred HHHHHHhhCCCeEEEECCCCCCCccc-hhhcCCHHHHHHHhccCCCEEEeccccccCCHH---HHHHHHHhCCCCEEEEe
Confidence 3455544444 578899999864332 111100011222211123356899999964322 2222222222221 0
Q ss_pred ----CCCC---CCCceEEEEeCC--EEEEEEcCcCC-C---CCc-----HHHHHHHHHHhhhccCCCCCeEEEEeccccc
Q 017051 230 ----ESGS---NSNLYYSFDVAG--AHLIMLGSYAD-Y---DEY-----SDQYRWLKDDLSKVDRKKTPWLLVLLHVPWY 291 (378)
Q Consensus 230 ----~~~~---~~~~~ysf~~g~--v~fi~ldt~~~-~---~~~-----~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~ 291 (378)
.... .-..|.-++.++ +-||++.+... . ... .+..+=+++..++.+.++...+|+++|....
T Consensus 116 v~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~~g~D~II~lsH~g~~ 195 (550)
T TIGR01530 116 VIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALKQQGINKIILLSHAGFE 195 (550)
T ss_pred eecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHHHHHHhCCCCEEEEEecCCcH
Confidence 0000 113466677887 56677754210 0 000 1222223333333322356779999998632
Q ss_pred cCCCCCCCCchHHHHHHHHHHHhc-CCcEEEecCccccc
Q 017051 292 NSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYE 329 (378)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~ 329 (378)
. + . .+.++. +||++|+||+|..-
T Consensus 196 ~---------d---~---~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 196 K---------N---C---EIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred H---------H---H---HHHhcCCCCCEEEeCCCCccc
Confidence 1 0 1 233332 79999999999853
No 87
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.94 E-value=1.2e-05 Score=68.41 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=34.0
Q ss_pred HHhhcCCCcEEEeccccccccchh--hhHHHHHHhhHhhhhCCceeecCCCCccC
Q 017051 156 DHIGQCKYDVHLLPGDLSYADYMQ--HRWDTFGELVQPLASARPWMVTQGNHEKE 208 (378)
Q Consensus 156 ~~i~~~~~d~vi~~GDl~~~~~~~--~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 208 (378)
+.+.+.+||.||++||+++..... ..+.... ........+|++.++||||..
T Consensus 35 ~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 35 RLIEEYGPERLIILGDLKHSFGGLSRQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred HHHHhcCCCEEEEeCcccccccccCHHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 334578999999999999754321 1222211 223334458999999999983
No 88
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.86 E-value=0.0003 Score=67.46 Aligned_cols=76 Identities=12% Similarity=0.242 Sum_probs=54.6
Q ss_pred CCCeEEEEEcccCCCCC------hHHHHHHhh-----cCCCcEEEeccccccccch-------------hhhHHHHHHhh
Q 017051 134 QFPITFAVAGDLGQTGW------TKSTLDHIG-----QCKYDVHLLPGDLSYADYM-------------QHRWDTFGELV 189 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~------~~~~~~~i~-----~~~~d~vi~~GDl~~~~~~-------------~~~~~~~~~~~ 189 (378)
...+++++++|.|.+.. ....++.+. ..+...++++||+++.-+- .++++.+.+.+
T Consensus 223 ~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L 302 (481)
T COG1311 223 DERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFL 302 (481)
T ss_pred CcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHH
Confidence 46789999999998643 123444443 3456899999999974221 34566677777
Q ss_pred HhhhhCCceeecCCCCccCC
Q 017051 190 QPLASARPWMVTQGNHEKES 209 (378)
Q Consensus 190 ~~l~~~~P~~~v~GNHD~~~ 209 (378)
..+...+-++..|||||...
T Consensus 303 ~~vp~~I~v~i~PGnhDa~r 322 (481)
T COG1311 303 DQVPEHIKVFIMPGNHDAVR 322 (481)
T ss_pred hhCCCCceEEEecCCCCccc
Confidence 77777788999999999953
No 89
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.80 E-value=0.0011 Score=69.17 Aligned_cols=218 Identities=18% Similarity=0.097 Sum_probs=102.9
Q ss_pred CCeEEEEEcccCCCCC-----------------hHHHHHHhhcCCC-cEEEeccccccccchhhhHHH---HH----Hhh
Q 017051 135 FPITFAVAGDLGQTGW-----------------TKSTLDHIGQCKY-DVHLLPGDLSYADYMQHRWDT---FG----ELV 189 (378)
Q Consensus 135 ~~~~f~~~gD~~~~~~-----------------~~~~~~~i~~~~~-d~vi~~GDl~~~~~~~~~~~~---~~----~~~ 189 (378)
-.++|+..+|+|..-. ....++++.+..+ -++|.+||++........... .. ..+
T Consensus 114 ~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~ 193 (814)
T PRK11907 114 VDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPM 193 (814)
T ss_pred eEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHH
Confidence 4699999999985410 0123455544444 478999999975432111000 00 011
Q ss_pred HhhhhCCc-eeecCCCCccCCCCcccchhhhchhcccCCC---C----CCCC-CCCceEEEEe-----CC------EEEE
Q 017051 190 QPLASARP-WMVTQGNHEKESIPLIMDAFQSYNARWKMPF---E----ESGS-NSNLYYSFDV-----AG------AHLI 249 (378)
Q Consensus 190 ~~l~~~~P-~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~---~----~~~~-~~~~~ysf~~-----g~------v~fi 249 (378)
-.++..+. =..++||||+++... .+..+.+....|. | ..+. .-..|--++. ++ +-||
T Consensus 194 i~amN~LGyDA~tLGNHEFDyG~d---~L~~~l~~a~fPvl~ANV~~~~~~~~~~~PY~I~e~~~~d~~G~~~~vKIGiI 270 (814)
T PRK11907 194 YAALEALGFDAGTLGNHEFNYGLD---YLEKVIATANMPIVNANVLDPTTGDFLYTPYTIVTKTFTDTEGKKVTLNIGIT 270 (814)
T ss_pred HHHHhccCCCEEEechhhcccCHH---HHHHHHHhCCCCEEEeeeeecCCCCccCCCeEEEEEEEecCCCcccceEEEEE
Confidence 11222222 246899999965432 2222222212221 0 0000 0123333443 33 5566
Q ss_pred EEcCcC--CCC--------CcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcE
Q 017051 250 MLGSYA--DYD--------EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDL 319 (378)
Q Consensus 250 ~ldt~~--~~~--------~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdl 319 (378)
++-+.. .++ .-.+-.+.+++...+.+.++++.+|++.|............++ .-..+-+--+||+
T Consensus 271 Glvtp~~~~w~~~~l~g~v~f~D~veaa~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~~~~En-----~~~~LA~v~GIDa 345 (814)
T PRK11907 271 GIVPPQILNWDKANLEGKVIVRDAVEAVRDIIPTMRAAGADIVLVLSHSGIGDDQYEVGEEN-----VGYQIASLSGVDA 345 (814)
T ss_pred EeCchhhhhcccccccCCeEECCHHHHHHHHHHHHHhcCCCEEEEEeCCCcccccccccccc-----hhhHHhcCCCCCE
Confidence 664311 111 0123344455555544444678899999988643211111111 1122222348999
Q ss_pred EEecCccccceeec------ccCCC----cCCCccEEEEeCCCCCCCCccc
Q 017051 320 VLAGHVHAYERSIR------VNNGK----PDPCGAVYITIGDGGNKEGLAR 360 (378)
Q Consensus 320 vl~GH~H~y~r~~~------~~~~~----~~~~g~~yiv~G~gG~~~~~~~ 360 (378)
+|.||.|..-.... -+.+. ...+|+..+..|.-|...|..+
T Consensus 346 IvgGHsH~~~p~~~~~~~~~~~p~vd~~~g~ingvpvVqaG~~G~~LG~Id 396 (814)
T PRK11907 346 VVTGHSHAEFPSGNGTSFYAKYSGVDDINGKINGTPVTMAGKYGDHLGIID 396 (814)
T ss_pred EEECCCCCcccCccccccccccCcccccCCcCCCEEEEecChhhceEEEEE
Confidence 99999998431110 00000 0113566677777776655443
No 90
>PHA02239 putative protein phosphatase
Probab=97.79 E-value=3.9e-05 Score=68.58 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=43.8
Q ss_pred eEEEEEcccCCCC-ChHHHHHHhhcC--CCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCcc
Q 017051 137 ITFAVAGDLGQTG-WTKSTLDHIGQC--KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (378)
Q Consensus 137 ~~f~~~gD~~~~~-~~~~~~~~i~~~--~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 207 (378)
++++++||+|... ...++++.+... ..|.++++||+++.+.... +.+...++.+....++++++||||.
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~--~v~~~l~~~~~~~~~~~~l~GNHE~ 72 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSK--DVVNYIFDLMSNDDNVVTLLGNHDD 72 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChH--HHHHHHHHHhhcCCCeEEEECCcHH
Confidence 3789999999542 124455555432 3599999999998654321 2222222222233689999999998
No 91
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.78 E-value=4.7e-05 Score=67.55 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=47.7
Q ss_pred eEEEEEcccCCCCCh--------------HHHHHHh----hcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCce
Q 017051 137 ITFAVAGDLGQTGWT--------------KSTLDHI----GQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPW 198 (378)
Q Consensus 137 ~~f~~~gD~~~~~~~--------------~~~~~~i----~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~ 198 (378)
-+.++++|+|.+... .++++++ .+.+||.||++||+.........++.+.+.++.+. .++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~--~~v 92 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTF--RDL 92 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcC--CcE
Confidence 467899999876421 1344443 46789999999999965443244555555555443 699
Q ss_pred eecCCCCcc
Q 017051 199 MVTQGNHEK 207 (378)
Q Consensus 199 ~~v~GNHD~ 207 (378)
+.++||||.
T Consensus 93 ~~V~GNHD~ 101 (225)
T TIGR00024 93 ILIRGNHDA 101 (225)
T ss_pred EEECCCCCC
Confidence 999999997
No 92
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.78 E-value=0.00046 Score=75.77 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=46.9
Q ss_pred HHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhc-CCcEEEecCccccceeecccCCC-------
Q 017051 267 LKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYERSIRVNNGK------- 338 (378)
Q Consensus 267 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~r~~~~~~~~------- 338 (378)
+++.+++.+++++..+|+++|.......... + ..+...++.++. +||++|.||.|...... -+.+.
T Consensus 223 ~~~~v~~lk~~gaDvII~l~H~G~~~~~~~~-~----~en~~~~la~~~~gID~Il~GHsH~~~~~~-~~~~~~~~~~~~ 296 (1163)
T PRK09419 223 ANKTIPEMKKGGADVIVALAHSGIESEYQSS-G----AEDSVYDLAEKTKGIDAIVAGHQHGLFPGA-DYKGVPQFDNAK 296 (1163)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCcCCCCCCC-C----cchHHHHHHHhCCCCcEEEeCCCcccccCc-cccccccccccc
Confidence 3444444433467889999999865432211 1 112333445443 79999999999864311 01000
Q ss_pred cCCCccEEEEeCCCCCCCCcc
Q 017051 339 PDPCGAVYITIGDGGNKEGLA 359 (378)
Q Consensus 339 ~~~~g~~yiv~G~gG~~~~~~ 359 (378)
...+|+..+.+|.-|...|..
T Consensus 297 ~~i~g~~ivqag~~g~~lg~i 317 (1163)
T PRK09419 297 GTINGIPVVMPKSWGKYLGKI 317 (1163)
T ss_pred ceECCEEEEccChhhcEEEEE
Confidence 011356666677666654433
No 93
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.70 E-value=0.0014 Score=68.25 Aligned_cols=79 Identities=24% Similarity=0.235 Sum_probs=43.3
Q ss_pred HHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhc-CCcEEEecCccccceeecccCCCcCCCccE
Q 017051 267 LKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYERSIRVNNGKPDPCGAV 345 (378)
Q Consensus 267 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~ 345 (378)
+++.+.+.+.++++.+|+++|......... .. +...-.. +++. +||++|+||+|..-... .+|+.
T Consensus 233 a~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~---~~--~ena~~~-l~~v~gID~IlgGHsH~~~~~~--------ingv~ 298 (780)
T PRK09418 233 AKKMVPKMKAEGADVIVALAHSGVDKSGYN---VG--MENASYY-LTEVPGVDAVLMGHSHTEVKDV--------FNGVP 298 (780)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCccccccc---cc--chhhhHH-HhcCCCCCEEEECCCCCccccc--------CCCEE
Confidence 333333333236778999999886432111 00 0011111 3443 79999999999854321 13566
Q ss_pred EEEeCCCCCCCCcc
Q 017051 346 YITIGDGGNKEGLA 359 (378)
Q Consensus 346 yiv~G~gG~~~~~~ 359 (378)
.+.+|.-|...|..
T Consensus 299 vvqaG~~G~~LG~I 312 (780)
T PRK09418 299 VVMPGVFGSNLGII 312 (780)
T ss_pred EEEcChhhcEEEEE
Confidence 66666666654433
No 94
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=97.59 E-value=0.0012 Score=58.56 Aligned_cols=178 Identities=17% Similarity=0.196 Sum_probs=87.9
Q ss_pred EEEcccCCCCChH----HHHHHhh-cCCCcEEEeccccccccch--hhhHHHHHHhhHhhhhCCceeecCCCCccCCCCc
Q 017051 140 AVAGDLGQTGWTK----STLDHIG-QCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLASARPWMVTQGNHEKESIPL 212 (378)
Q Consensus 140 ~~~gD~~~~~~~~----~~~~~i~-~~~~d~vi~~GDl~~~~~~--~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~ 212 (378)
+++||+ .+.... ..+..+. +.++||||..|..+-.+.. ....++++. ..+-+ .+.|||=+...
T Consensus 1 LfiGDI-vG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~L~~------~GvDv-iT~GNH~wdkk-- 70 (253)
T PF13277_consen 1 LFIGDI-VGKPGRRAVKEHLPELKEEYGIDFVIANGENAAGGFGITPKIAEELFK------AGVDV-ITMGNHIWDKK-- 70 (253)
T ss_dssp EEE-EB-BCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHHHHH------HT-SE-EE--TTTTSST--
T ss_pred CeEEec-CCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHHHHh------cCCCE-EecCcccccCc--
Confidence 467887 222222 3333443 6789999999999854332 222222221 12444 48999998532
Q ss_pred ccchhhhchh---cccCCCCCC-CCCCCceEEEEeCCEEEEEEcCc--CCCCCcHHHHHHHHHHhhhccCCCCCeEEEEe
Q 017051 213 IMDAFQSYNA---RWKMPFEES-GSNSNLYYSFDVAGAHLIMLGSY--ADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLL 286 (378)
Q Consensus 213 ~~~~~~~~~~---~~~~p~~~~-~~~~~~~ysf~~g~v~fi~ldt~--~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~ 286 (378)
....|.+ +.-.|.|-+ +..+..|..++.++..+.+++-. ........-+..+++.|++.+. +.+.+||=+
T Consensus 71 ---ei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l~~-~~~~iiVDF 146 (253)
T PF13277_consen 71 ---EIFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEELKE-ETDIIIVDF 146 (253)
T ss_dssp ---THHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH------SEEEEEE
T ss_pred ---HHHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhccc-cCCEEEEEe
Confidence 1222222 222344422 34467899999998777777652 2222223445556666666432 667889988
Q ss_pred ccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEE
Q 017051 287 HVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYIT 348 (378)
Q Consensus 287 H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv 348 (378)
|.=..+ . +.-.-.+-.-+|.+|+.-|+|.-.-...+. |+|+-||+
T Consensus 147 HAEaTS-----------E-K~A~g~~lDGrvsaV~GTHTHVqTaDerIL-----p~GTaYiT 191 (253)
T PF13277_consen 147 HAEATS-----------E-KQAMGWYLDGRVSAVVGTHTHVQTADERIL-----PGGTAYIT 191 (253)
T ss_dssp E-S-HH-----------H-HHHHHHHHBTTBSEEEEESSSS-BS--EE------TTS-EEES
T ss_pred ecCcHH-----------H-HHHHHHHhCCcEEEEEeCCCCccCchhhcc-----CCCCEEEe
Confidence 873221 1 333345667789999999999854443333 57899875
No 95
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.56 E-value=0.0001 Score=67.30 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=44.1
Q ss_pred eEEEEEcccCCCCC-hHHHHHHhh-cCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCcc
Q 017051 137 ITFAVAGDLGQTGW-TKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (378)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~~~~i~-~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 207 (378)
++++++||+|.... ..++++++. +.+.|.++++||+++.+... ....+.+..+ ..++++|.||||.
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s---~~vl~~l~~l--~~~~~~VlGNHD~ 68 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDS---LEVLRFVKSL--GDSAVTVLGNHDL 68 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCH---HHHHHHHHhc--CCCeEEEecChhH
Confidence 36899999986532 344556554 35789999999999865432 1222333333 2468899999998
No 96
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.56 E-value=0.0022 Score=57.80 Aligned_cols=131 Identities=15% Similarity=0.210 Sum_probs=74.8
Q ss_pred EEEEcccCCCCCh------HHHHHHhh-----------cCCCcEEEeccccccccch-------------------hhhH
Q 017051 139 FAVAGDLGQTGWT------KSTLDHIG-----------QCKYDVHLLPGDLSYADYM-------------------QHRW 182 (378)
Q Consensus 139 f~~~gD~~~~~~~------~~~~~~i~-----------~~~~d~vi~~GDl~~~~~~-------------------~~~~ 182 (378)
++++||++.+... +..++.+. ..+...+|++||.+...+. ....
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAV 81 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHHH
Confidence 6788998876542 12223332 2344579999999975332 1223
Q ss_pred HHHHHhhHhhhhCCceeecCCCCccCCCCcccchhhhchhcccCCCC---CCCCCCCceEEEEeCCEEEEEEcCcC----
Q 017051 183 DTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFE---ESGSNSNLYYSFDVAGAHLIMLGSYA---- 255 (378)
Q Consensus 183 ~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~ysf~~g~v~fi~ldt~~---- 255 (378)
+.+..++..+.+.+|+..+|||||-......+..+.. ..| |.. ..-..-..-|.|++++++|++.....
T Consensus 82 ~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~--~lf--p~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di 157 (257)
T cd07387 82 KELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHR--CLF--PKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDI 157 (257)
T ss_pred HHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCH--HHh--hcccccCCcEEeCCCeEEEECCEEEEEECCCCHHHH
Confidence 4455677778888999999999998543221122211 111 110 00011133456899999999987742
Q ss_pred -CCCCcHHHHHHHHHHhhh
Q 017051 256 -DYDEYSDQYRWLKDDLSK 273 (378)
Q Consensus 256 -~~~~~~~Q~~WL~~~L~~ 273 (378)
.|.....-++.|+..|+.
T Consensus 158 ~ky~~~~~~l~~me~~L~w 176 (257)
T cd07387 158 LKYSSLESRLDILERTLKW 176 (257)
T ss_pred HHhCCCCCHHHHHHHHHHh
Confidence 122234456777777665
No 97
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.54 E-value=0.00012 Score=65.52 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=44.1
Q ss_pred EEEEEcccCCCC-ChHHHHHHhhc----------CCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCc
Q 017051 138 TFAVAGDLGQTG-WTKSTLDHIGQ----------CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHE 206 (378)
Q Consensus 138 ~f~~~gD~~~~~-~~~~~~~~i~~----------~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD 206 (378)
+++++||+|... ...++++.+.. .+.|.++++||+++.+.. ..+..+.+..+...-.++++.||||
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~---s~evl~~l~~l~~~~~~~~v~GNHE 78 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPD---SPEVLRLVMSMVAAGAALCVPGNHD 78 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCC---HHHHHHHHHHHhhCCcEEEEECCcH
Confidence 689999998653 23455666521 136899999999986543 2222334444433346889999999
Q ss_pred c
Q 017051 207 K 207 (378)
Q Consensus 207 ~ 207 (378)
.
T Consensus 79 ~ 79 (234)
T cd07423 79 N 79 (234)
T ss_pred H
Confidence 8
No 98
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=97.46 E-value=0.0037 Score=54.78 Aligned_cols=187 Identities=18% Similarity=0.229 Sum_probs=104.7
Q ss_pred eEEEEEcccCCCCChHHH----HHHhh-cCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCC
Q 017051 137 ITFAVAGDLGQTGWTKST----LDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIP 211 (378)
Q Consensus 137 ~~f~~~gD~~~~~~~~~~----~~~i~-~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~ 211 (378)
+|++++||+ .+.....+ +..++ +.++||+|..|-.+-.+. .-.|+.+...++. .+-+ .+.|||=+....
T Consensus 1 mriLfiGDv-vGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~-Git~k~y~~l~~~---G~dv-iT~GNH~wd~~e 74 (266)
T COG1692 1 MRILFIGDV-VGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGF-GITEKIYKELLEA---GADV-ITLGNHTWDQKE 74 (266)
T ss_pred CeEEEEecc-cCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCc-CCCHHHHHHHHHh---CCCE-EecccccccchH
Confidence 589999998 33222333 33343 678999999999985433 2344444444332 2333 489999985321
Q ss_pred cccchhhhchhcccCCCCCC-CCCCCceEEEEeCCEEEEEEcCc--CCCC-CcHHHHHHHHHHhhhccCCCCCeEEEEec
Q 017051 212 LIMDAFQSYNARWKMPFEES-GSNSNLYYSFDVAGAHLIMLGSY--ADYD-EYSDQYRWLKDDLSKVDRKKTPWLLVLLH 287 (378)
Q Consensus 212 ~~~~~~~~~~~~~~~p~~~~-~~~~~~~ysf~~g~v~fi~ldt~--~~~~-~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H 287 (378)
. ..+..-..++-.|.+-+ +..+..|+-|...+..+.+++-. .... ....-+.-+++.+.+.+. +++.+||-+|
T Consensus 75 i--~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~~-~~~~iiVDFH 151 (266)
T COG1692 75 I--LDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIKL-GTDLIIVDFH 151 (266)
T ss_pred H--HHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHHHHHHHHhCcc-CCceEEEEcc
Confidence 1 01111112223344322 23456777788877666555542 2111 123445566777777654 5567899998
Q ss_pred cccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEe
Q 017051 288 VPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITI 349 (378)
Q Consensus 288 ~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~ 349 (378)
.-..+.. .-.-++-+..|.+|+.=|+|.-....++. ++|+-|++-
T Consensus 152 AEtTSEK------------~a~g~yldGrvsavvGTHTHV~TaD~rIL-----~~GTayiTD 196 (266)
T COG1692 152 AETTSEK------------NAFGWYLDGRVSAVVGTHTHVPTADERIL-----PKGTAYITD 196 (266)
T ss_pred ccchhhh------------hhhheEEcCeEEEEEeccCccccccceec-----CCCcEEEec
Confidence 7533211 11112334468899999999865554443 578888753
No 99
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.45 E-value=0.0028 Score=65.11 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=46.3
Q ss_pred HHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHh-cCCcEEEecCccccceeecccC---C---
Q 017051 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYA-ASVDLVLAGHVHAYERSIRVNN---G--- 337 (378)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~vdlvl~GH~H~y~r~~~~~~---~--- 337 (378)
+-+++...+.+.++++.+|++.|............+ +.... +.+ -+||++|.||.|..--.. .+. +
T Consensus 205 e~a~~~v~~Lk~~gaDvII~LsH~G~~~d~~~~~ae-----n~~~~-l~~v~gID~Il~GHsH~~~p~~-~~~~~~~~d~ 277 (649)
T PRK09420 205 ETARKYVPEMKEKGADIVVAIPHSGISADPYKAMAE-----NSVYY-LSEVPGIDAIMFGHSHAVFPGK-DFADIPGADI 277 (649)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCcCCCCcccccc-----chhHH-HhcCCCCCEEEeCCCCccCcCc-ccccCCcccc
Confidence 334444444433467889999998864321101111 11112 333 379999999999753111 010 0
Q ss_pred -CcCCCccEEEEeCCCCCCCCccc
Q 017051 338 -KPDPCGAVYITIGDGGNKEGLAR 360 (378)
Q Consensus 338 -~~~~~g~~yiv~G~gG~~~~~~~ 360 (378)
+...+|+..+..|.-|...|...
T Consensus 278 ~~g~i~g~pvv~aG~~G~~lG~Id 301 (649)
T PRK09420 278 AKGTLNGVPAVMPGRWGDHLGVVD 301 (649)
T ss_pred ccccCCCEEEEeCChhhcEEEEEE
Confidence 01124666677777776555443
No 100
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.42 E-value=0.0008 Score=61.80 Aligned_cols=173 Identities=20% Similarity=0.211 Sum_probs=93.6
Q ss_pred eEEEEEcccCCCCC-hHHHHHHhhc---CCCcEEEeccccccccch--------hhhHHH---HHHhh-HhhhhCCceee
Q 017051 137 ITFAVAGDLGQTGW-TKSTLDHIGQ---CKYDVHLLPGDLSYADYM--------QHRWDT---FGELV-QPLASARPWMV 200 (378)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~~~~i~~---~~~d~vi~~GDl~~~~~~--------~~~~~~---~~~~~-~~l~~~~P~~~ 200 (378)
+|++|-|++|..-. .-+.+..+.+ .+.|++|++||+---... ...+.. |.+.. ....+.+|.++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 47899999975421 1233444443 489999999999421111 112222 22221 22344588999
Q ss_pred cCCCCccCCCCcccchhhhchhcccCCCCCCCCCCCceE-----EEEeCCEEEEEEcCc---CCCCCc--------HHHH
Q 017051 201 TQGNHEKESIPLIMDAFQSYNARWKMPFEESGSNSNLYY-----SFDVAGAHLIMLGSY---ADYDEY--------SDQY 264 (378)
Q Consensus 201 v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y-----sf~~g~v~fi~ldt~---~~~~~~--------~~Q~ 264 (378)
+=||||..+ |.. .+|..+- ...+.|| ...+|++|+-+|... .+|..+ ....
T Consensus 81 IGGNHEAsn----------yL~--eLpyGGw-VApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~sti 147 (456)
T KOG2863|consen 81 IGGNHEASN----------YLQ--ELPYGGW-VAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNSTI 147 (456)
T ss_pred ecCchHHHH----------HHH--hcccCce-eccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccchhh
Confidence 999999832 221 2233100 0123444 257889999998762 222110 0000
Q ss_pred -------HHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCch-----------------HHHHHHHHHHHhcCCcEE
Q 017051 265 -------RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGD-----------------GMMAIMEPLLYAASVDLV 320 (378)
Q Consensus 265 -------~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~-----------------~~~~~l~~l~~~~~vdlv 320 (378)
+.=...|... +.|.-|.++|.=+-+. .++|+.. -....++++|++-++..+
T Consensus 148 RsiYHvR~~dV~~Lkql---k~piDIfLSHDWP~GI--~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~yW 222 (456)
T KOG2863|consen 148 RSIYHVRISDVAKLKQL---KHPIDIFLSHDWPRGI--YYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQYW 222 (456)
T ss_pred hhhhhhhhhhhHHHHhh---cCcceEEeecCCCcch--hhcCCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhCcchh
Confidence 0001123333 3455688888643221 1222211 123577889999999999
Q ss_pred EecCccc
Q 017051 321 LAGHVHA 327 (378)
Q Consensus 321 l~GH~H~ 327 (378)
|+.|.|.
T Consensus 223 fsAHLH~ 229 (456)
T KOG2863|consen 223 FSAHLHV 229 (456)
T ss_pred hhhhHhh
Confidence 9999996
No 101
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.40 E-value=0.0042 Score=50.51 Aligned_cols=66 Identities=21% Similarity=0.178 Sum_probs=40.0
Q ss_pred EEEEEcccCCCCCh--------------HHHHHHhh-cCCC-cEEEeccccccccchhhhHHHHHHhhHhhhhCCceeec
Q 017051 138 TFAVAGDLGQTGWT--------------KSTLDHIG-QCKY-DVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVT 201 (378)
Q Consensus 138 ~f~~~gD~~~~~~~--------------~~~~~~i~-~~~~-d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v 201 (378)
.+-++||+|.+... ..++.... -.+| |.+.++||++..... -.....+++.|...+ ..|
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~---~~~a~~IlerLnGrk--hlv 79 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANR---ERAAGLILERLNGRK--HLV 79 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccch---hhHHHHHHHHcCCcE--EEe
Confidence 35678999866321 12344433 2344 788899999864432 123344555555443 789
Q ss_pred CCCCccC
Q 017051 202 QGNHEKE 208 (378)
Q Consensus 202 ~GNHD~~ 208 (378)
+||||-.
T Consensus 80 ~GNhDk~ 86 (186)
T COG4186 80 PGNHDKC 86 (186)
T ss_pred eCCCCCC
Confidence 9999984
No 102
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.37 E-value=0.00027 Score=63.80 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=43.2
Q ss_pred eEEEEEcccCCCCC-hHHHHHHhhc---------CCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCc
Q 017051 137 ITFAVAGDLGQTGW-TKSTLDHIGQ---------CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHE 206 (378)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~~~~i~~---------~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD 206 (378)
.|+.++||+|.... ..++++++.- ..-|.++++||+++.+.... + ..+.+..+...-.++++.||||
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~--~-vl~~~~~~~~~~~~~~l~GNHE 77 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSL--R-MIEIVWELVEKKAAYYVPGNHC 77 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChH--H-HHHHHHHHhhCCCEEEEeCccH
Confidence 36899999986532 3445555431 23479999999998665321 1 2223333333457899999999
Q ss_pred c
Q 017051 207 K 207 (378)
Q Consensus 207 ~ 207 (378)
.
T Consensus 78 ~ 78 (245)
T PRK13625 78 N 78 (245)
T ss_pred H
Confidence 6
No 103
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.36 E-value=0.0034 Score=64.31 Aligned_cols=77 Identities=22% Similarity=0.141 Sum_probs=40.7
Q ss_pred CCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhc-CCcEEEecCccccceeecccCCC-------cCCCccEEEE
Q 017051 277 KKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAA-SVDLVLAGHVHAYERSIRVNNGK-------PDPCGAVYIT 348 (378)
Q Consensus 277 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~r~~~~~~~~-------~~~~g~~yiv 348 (378)
+++..+|+++|............+ +. ...+++. +||++++||+|..--.. .+.+. ...+|+..+.
T Consensus 194 ~gaDvII~LsH~G~~~d~~~~~~e-----n~-~~~l~~v~gID~Il~GHsH~~~~~~-~~~~~~~~d~~~~~i~g~~vvq 266 (626)
T TIGR01390 194 KGADIIVALAHSGISADPYQPGAE-----NS-AYYLTKVPGIDAVLFGHSHAVFPGK-DFATIPGADITNGTINGVPAVM 266 (626)
T ss_pred cCCCEEEEEeccCcCCCccccccc-----hH-HHHHhcCCCCCEEEcCCCCccCcCc-ccccCCcccccccccCCEEEEe
Confidence 357789999998865321111111 11 1123443 89999999999743211 01000 0123566666
Q ss_pred eCCCCCCCCccc
Q 017051 349 IGDGGNKEGLAR 360 (378)
Q Consensus 349 ~G~gG~~~~~~~ 360 (378)
.|.-|...|...
T Consensus 267 aG~~G~~lG~id 278 (626)
T TIGR01390 267 AGYWGNHLGVVD 278 (626)
T ss_pred CChhhcEEEEEE
Confidence 776666554433
No 104
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.34 E-value=0.00034 Score=63.77 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=41.9
Q ss_pred EEEEEcccCCCCC-hHHHHHHhhc------CCCcEEEeccccccccchhhhHHHHHHhhHhhhhC---CceeecCCCCcc
Q 017051 138 TFAVAGDLGQTGW-TKSTLDHIGQ------CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA---RPWMVTQGNHEK 207 (378)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~------~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~---~P~~~v~GNHD~ 207 (378)
++.++||+|.... .+.+++.+.. ...+.+|++||+++.+..... ..+.+..+... ..++++.||||.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~e---Vld~L~~l~~~~~~~~vv~LrGNHE~ 79 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRK---VIDFLISLPEKHPKQRHVFLCGNHDF 79 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHH---HHHHHHHhhhcccccceEEEecCChH
Confidence 6899999986532 3455555532 235789999999987654222 22222223222 247889999996
No 105
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.32 E-value=0.00032 Score=62.27 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=42.3
Q ss_pred EEEEcccCCCCC-hHHHHHHhhc--------CCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCcc
Q 017051 139 FAVAGDLGQTGW-TKSTLDHIGQ--------CKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (378)
Q Consensus 139 f~~~gD~~~~~~-~~~~~~~i~~--------~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 207 (378)
+.++||+|.... ..++++++.. ...|.+|++||+++.+.... ...+.+..+...-.++.+.||||.
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~---~vl~~l~~l~~~~~~~~l~GNHE~ 75 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIR---ELLEIVKSMVDAGHALAVMGNHEF 75 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHH---HHHHHHHHhhcCCCEEEEEccCcH
Confidence 368999986532 3455666532 14689999999998765421 222333333333468889999998
No 106
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=97.27 E-value=0.0027 Score=46.52 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=47.2
Q ss_pred CCceEEEEecCCCeEEEEEEcCCCC----CCcEEEEeccCCCCCeeEEeeeeEEeeeeeccCeEEEEEECCCCCCCEEEE
Q 017051 42 HPQQVHISLAGDSHMRVTWITDDES----SPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFY 117 (378)
Q Consensus 42 ~p~~v~l~~~~~~~~~i~W~t~~~~----~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~l~~L~p~t~Y~Y 117 (378)
+|..+++...+.+++.|+|...... ..-.|+|....+.. ..... ..+.....++|++|+|+|.|.+
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~------~~~~~----~~~~~~~~~~i~~L~p~t~Y~~ 71 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTS------DWQEV----TVPGNETSYTITGLQPGTTYEF 71 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSS------EEEEE----EEETTSSEEEEESCCTTSEEEE
T ss_pred cCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccce------eeeee----eeeeeeeeeeeccCCCCCEEEE
Confidence 6889999988999999999998411 23466776554332 00111 1112233778899999999999
Q ss_pred EeCc
Q 017051 118 RCGR 121 (378)
Q Consensus 118 ~v~~ 121 (378)
+|..
T Consensus 72 ~v~a 75 (85)
T PF00041_consen 72 RVRA 75 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9864
No 107
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.17 E-value=0.00045 Score=61.34 Aligned_cols=66 Identities=23% Similarity=0.169 Sum_probs=42.1
Q ss_pred EEEcccCCCCC-hHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhh-CCceeecCCCCccC
Q 017051 140 AVAGDLGQTGW-TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS-ARPWMVTQGNHEKE 208 (378)
Q Consensus 140 ~~~gD~~~~~~-~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~-~~P~~~v~GNHD~~ 208 (378)
.++||+|.... ..++++.+....+|.+|++||+++.+... ......+..+.. ..+++.+.||||..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~---~~~l~~l~~~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDS---VEVIDLLLALKILPDNVILLRGNHEDM 68 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCCc---HHHHHHHHHhcCCCCcEEEEccCchhh
Confidence 37899985421 23455555556789999999999865432 122222222221 34899999999984
No 108
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.05 E-value=0.0008 Score=60.86 Aligned_cols=64 Identities=22% Similarity=0.144 Sum_probs=42.7
Q ss_pred EEEcccCCCC-ChHHHHHHhh-cCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccC
Q 017051 140 AVAGDLGQTG-WTKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (378)
Q Consensus 140 ~~~gD~~~~~-~~~~~~~~i~-~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 208 (378)
.++||+|... ..+++++++. ..+.|.++++||+++.+... .+..+.+..+. ..+..++||||..
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s---~evl~~l~~l~--~~v~~VlGNHD~~ 67 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDS---LETLRFVKSLG--DSAKTVLGNHDLH 67 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCH---HHHHHHHHhcC--CCeEEEcCCchHH
Confidence 5899998653 2345666665 34689999999999866532 12233333332 3678999999983
No 109
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=97.01 E-value=0.02 Score=51.41 Aligned_cols=128 Identities=15% Similarity=0.072 Sum_probs=67.3
Q ss_pred CceeecCCCCccCCCCcccchhhhchh---cccCCCCCCCCC---CCceEEEEeCC--EEEEEEcCcCCCC---------
Q 017051 196 RPWMVTQGNHEKESIPLIMDAFQSYNA---RWKMPFEESGSN---SNLYYSFDVAG--AHLIMLGSYADYD--------- 258 (378)
Q Consensus 196 ~P~~~v~GNHD~~~~~~~~~~~~~~~~---~~~~p~~~~~~~---~~~~ysf~~g~--v~fi~ldt~~~~~--------- 258 (378)
+-++.+-+||+++.... ++....+ .-.++..+.+.. ...+..++.++ +.|+++.+...-.
T Consensus 78 ~d~~tlaNNH~fD~G~~---gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~ 154 (239)
T cd07381 78 FDVVSLANNHTLDYGEE---GLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGIPLAAGARPG 154 (239)
T ss_pred CCEEEcccccccccchH---HHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCCcCcccCCcc
Confidence 55555556999964432 2222211 112332211111 13455567777 4555554421100
Q ss_pred -CcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceee
Q 017051 259 -EYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (378)
Q Consensus 259 -~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 332 (378)
......+-+++.+++.++ +.+.+|+..|-..-... ........+...+.+.++|+|+.||.|..+-..
T Consensus 155 ~~~~~~~~~~~~~i~~lr~-~~D~vIv~~H~G~e~~~-----~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E 223 (239)
T cd07381 155 GVNPLDLERIAADIAEAKK-KADIVIVSLHWGVEYSY-----YPTPEQRELARALIDAGADLVIGHHPHVLQGIE 223 (239)
T ss_pred ccCccCHHHHHHHHHHHhh-cCCEEEEEecCcccCCC-----CCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeE
Confidence 011123446666666554 47889999996542211 111234566666667899999999999876443
No 110
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=96.99 E-value=0.00063 Score=60.56 Aligned_cols=166 Identities=20% Similarity=0.256 Sum_probs=95.7
Q ss_pred CcEEEeccccccccchh-------hhHHHHH-H---hhHhhhhCCceeecCCCCccCCC--Ccc----cchhhhchhcc-
Q 017051 163 YDVHLLPGDLSYADYMQ-------HRWDTFG-E---LVQPLASARPWMVTQGNHEKESI--PLI----MDAFQSYNARW- 224 (378)
Q Consensus 163 ~d~vi~~GDl~~~~~~~-------~~~~~~~-~---~~~~l~~~~P~~~v~GNHD~~~~--~~~----~~~~~~~~~~~- 224 (378)
|=-++..||++++++.+ .++..|. + ...+..-.+|+|.-.||||..-. +.. ......|...+
T Consensus 127 plGlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~H 206 (392)
T COG5555 127 PLGLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYH 206 (392)
T ss_pred ceeEEeecceeccCCCcccCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhc
Confidence 34577788999876541 1111111 1 11122234899999999999522 110 11112222211
Q ss_pred -----cCCCCCCC--CCCCceEEEEeCCEEEEEEcCcCCCCC--cHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCC
Q 017051 225 -----KMPFEESG--SNSNLYYSFDVAGAHLIMLGSYADYDE--YSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNE 295 (378)
Q Consensus 225 -----~~p~~~~~--~~~~~~ysf~~g~v~fi~ldt~~~~~~--~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~ 295 (378)
..|..... ......||+++|+++.+-+-+...-.. ....+-||+.+|........+ ++++.|..+.....
T Consensus 207 r~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyGwdtfst 285 (392)
T COG5555 207 RSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYGWDTFST 285 (392)
T ss_pred CcCcccCCCCCcccccccchheeccccceeEEEEeeeccccCCCccccCcceeccceeeccCCCc-eeehhhhCccceec
Confidence 12211111 223568899999999887765322111 134568999999876554555 89999986532211
Q ss_pred C-C---------CCC------chHHHHHHHHHHHhcCCcEEEecCccccc
Q 017051 296 A-H---------QGE------GDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (378)
Q Consensus 296 ~-~---------~~~------~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 329 (378)
. + .+. ....+..+...++-|+|...+.||.|...
T Consensus 286 eawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~~ 335 (392)
T COG5555 286 EAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDFN 335 (392)
T ss_pred cccCchhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccccc
Confidence 1 0 011 12467899999999999999999999753
No 111
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.89 E-value=0.0013 Score=59.78 Aligned_cols=65 Identities=22% Similarity=0.177 Sum_probs=43.2
Q ss_pred EEEEEcccCCCC-ChHHHHHHhh-cCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCcc
Q 017051 138 TFAVAGDLGQTG-WTKSTLDHIG-QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (378)
Q Consensus 138 ~f~~~gD~~~~~-~~~~~~~~i~-~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 207 (378)
+..++||+|... ...++++++. +.+.|-++++||+++.+.... ...+.+..+. ..+..|.||||.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~sl---evL~~l~~l~--~~~~~VlGNHD~ 68 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSL---EVLRYVKSLG--DAVRLVLGNHDL 68 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHH---HHHHHHHhcC--CCeEEEEChhHH
Confidence 468999998653 3456777776 456799999999998665421 1222333332 235689999997
No 112
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=96.87 E-value=0.033 Score=50.04 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=39.3
Q ss_pred HHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceee
Q 017051 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (378)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 332 (378)
+-+++.+++++. +.+++|++.|-..-.... . ......+..-+.+.++|+|+.||.|..+...
T Consensus 160 ~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~----p-~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e 221 (239)
T smart00854 160 EKILADIARARK-KADVVIVSLHWGVEYQYE----P-TDEQRELAHALIDAGADVVIGHHPHVLQPIE 221 (239)
T ss_pred HHHHHHHHHHhc-cCCEEEEEecCccccCCC----C-CHHHHHHHHHHHHcCCCEEEcCCCCcCCceE
Confidence 334555555544 578899999976532111 1 1133455555656799999999999876543
No 113
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.67 E-value=0.004 Score=54.87 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=48.3
Q ss_pred CeEEEEEcccCCCCCh--------------H---HHHH-HhhcCCCcEEEeccccccccch--hhhHHHHHHhhHhhhhC
Q 017051 136 PITFAVAGDLGQTGWT--------------K---STLD-HIGQCKYDVHLLPGDLSYADYM--QHRWDTFGELVQPLASA 195 (378)
Q Consensus 136 ~~~f~~~gD~~~~~~~--------------~---~~~~-~i~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~~~~~l~~~ 195 (378)
.-+.++++|+|.+... . ..++ -+...+|+-+|++||+-.+-+. ..+|+....+++.+...
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~ 98 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER 98 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC
Confidence 3568999999876321 1 2233 2357899999999999765443 34555555555544433
Q ss_pred CceeecCCCCccC
Q 017051 196 RPWMVTQGNHEKE 208 (378)
Q Consensus 196 ~P~~~v~GNHD~~ 208 (378)
-++.+.||||-.
T Consensus 99 -evi~i~GNHD~~ 110 (235)
T COG1407 99 -EVIIIRGNHDNG 110 (235)
T ss_pred -cEEEEeccCCCc
Confidence 599999999984
No 114
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.27 E-value=0.11 Score=47.01 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceee
Q 017051 263 QYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (378)
Q Consensus 263 Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 332 (378)
+.+.++++++++++ +.+++||..|-..-... ........+...+.+.|+|+|+.+|.|..+-..
T Consensus 169 ~~~~i~~~i~~~r~-~~D~vIv~~HwG~e~~~-----~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E 232 (250)
T PF09587_consen 169 GIERIKEDIREARK-KADVVIVSLHWGIEYEN-----YPTPEQRELARALIDAGADIIIGHHPHVIQPVE 232 (250)
T ss_pred hHHHHHHHHHHHhc-CCCEEEEEeccCCCCCC-----CCCHHHHHHHHHHHHcCCCEEEeCCCCcccceE
Confidence 45888888888873 78899999997532111 112244666666777899999999999977554
No 115
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=96.17 E-value=0.035 Score=56.67 Aligned_cols=95 Identities=18% Similarity=0.258 Sum_probs=62.9
Q ss_pred CCCcccCCCCCCCCCCceEEEEecCCCeEEEEEEcCCCCCCc----EEEEeccCCCCCeeEEeeeeEEeeeeeccCeEEE
Q 017051 28 RRTLEFPWDPKPSSHPQQVHISLAGDSHMRVTWITDDESSPS----VVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHH 103 (378)
Q Consensus 28 ~~~~~~~~~~~~~~~p~~v~l~~~~~~~~~i~W~t~~~~~~~----~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 103 (378)
..++.++.+++.......+++.-.+.++++++|.-.+.+... .|+|.++..+ ..+|.. ......+
T Consensus 431 ~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~--------e~~~~~---~~t~~~~ 499 (996)
T KOG0196|consen 431 FASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDED--------ERSYST---LKTKTTT 499 (996)
T ss_pred ceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeecccc--------ccceeE---Eecccce
Confidence 344556666666666666777767799999999988765433 4555544321 111211 1223557
Q ss_pred EEECCCCCCCEEEEEeCc--------cCceeEEECCCC
Q 017051 104 TVIGPLEHDTVYFYRCGR--------QGPEFEFKTPPA 133 (378)
Q Consensus 104 ~~l~~L~p~t~Y~Y~v~~--------~s~~~~F~t~p~ 133 (378)
|+|+||+|||.|-+||.. -|....|.|.+.
T Consensus 500 ~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 500 ATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred EEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 889999999999999964 267788988764
No 116
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.04 E-value=0.0095 Score=54.51 Aligned_cols=69 Identities=19% Similarity=0.147 Sum_probs=42.8
Q ss_pred eEEEEEcccCCCC-ChHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhh--hCCceeecCCCCccC
Q 017051 137 ITFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLA--SARPWMVTQGNHEKE 208 (378)
Q Consensus 137 ~~f~~~gD~~~~~-~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~--~~~P~~~v~GNHD~~ 208 (378)
-+++++||+|... ...++++.+.....+-++++||+++.+.... +.+ ..+..+. ..--++.+.||||..
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~--e~l-~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSI--EVI-LLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCCCChH--HHH-HHHHHHHhcCCCCEEEEeccccHH
Confidence 3589999998542 2334455544556788999999998665321 221 1222221 123578899999984
No 117
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=95.99 E-value=0.018 Score=55.90 Aligned_cols=45 Identities=24% Similarity=0.118 Sum_probs=33.7
Q ss_pred CCCeEEEEEcccCCCCC-------------hHHHHHHhhcCCCcEEEeccccccccch
Q 017051 134 QFPITFAVAGDLGQTGW-------------TKSTLDHIGQCKYDVHLLPGDLSYADYM 178 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~-------------~~~~~~~i~~~~~d~vi~~GDl~~~~~~ 178 (378)
.+.+||++.+|.|.+.. +..++.-+...+.|+|+..||+...+..
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkP 68 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKP 68 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCc
Confidence 46799999999987632 1234444458899999999999876554
No 118
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=95.97 E-value=0.011 Score=55.07 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=41.3
Q ss_pred EEEEEcccCCCC-ChHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhC--CceeecCCCCccC
Q 017051 138 TFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA--RPWMVTQGNHEKE 208 (378)
Q Consensus 138 ~f~~~gD~~~~~-~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~--~P~~~v~GNHD~~ 208 (378)
+++++||+|..- ...++++.......+-++++||+++.+... -+.+ ..+..+.-. .-++.++||||..
T Consensus 44 ~i~ViGDIHG~~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s--~Evi-~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 44 PVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYFS--IECV-LYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEECCccCCCCCh--HHHH-HHHHHHHhhcCCCEEEEeCCCcHH
Confidence 589999998542 223344443344568899999999866531 1222 222222222 3578899999984
No 119
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=95.57 E-value=0.016 Score=53.38 Aligned_cols=68 Identities=24% Similarity=0.225 Sum_probs=40.9
Q ss_pred EEEEEcccCCCC-ChHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhh--CCceeecCCCCccC
Q 017051 138 TFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS--ARPWMVTQGNHEKE 208 (378)
Q Consensus 138 ~f~~~gD~~~~~-~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~--~~P~~~v~GNHD~~ 208 (378)
.+.++||+|..- ....+++.......+-+|++||+++.+.... +.+ ..+..+.- .-.++.+.||||..
T Consensus 43 ~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~--evl-~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 43 PVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSV--ETF-LLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred CEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHH--HHH-HHHHHHhhcCCCcEEEEecccchH
Confidence 488999998542 2233444443445578999999998665322 221 12222221 23588999999984
No 120
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=95.30 E-value=0.028 Score=52.47 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=39.4
Q ss_pred EEEEEcccCCCCC-hHHHHHHhhcC-CCcEEEeccccccccchhhhHHHHHHhhHhhh--hCCceeecCCCCccC
Q 017051 138 TFAVAGDLGQTGW-TKSTLDHIGQC-KYDVHLLPGDLSYADYMQHRWDTFGELVQPLA--SARPWMVTQGNHEKE 208 (378)
Q Consensus 138 ~f~~~gD~~~~~~-~~~~~~~i~~~-~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~--~~~P~~~v~GNHD~~ 208 (378)
++.++||+|..-. ...+++..... ..+.+|++||+++.+... .+.+ ..+-.+. ..--++.+.||||..
T Consensus 52 ~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s--~Evl-~ll~~lk~~~p~~v~llRGNHE~~ 123 (321)
T cd07420 52 QVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRS--IEIL-IILFAFFLVYPNEVHLNRGNHEDH 123 (321)
T ss_pred CeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEeccccCCCCCc--HHHH-HHHHHHhhcCCCcEEEecCchhhh
Confidence 6899999985521 12233332222 236799999999876532 2222 1122221 123488899999985
No 121
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=95.30 E-value=0.022 Score=52.64 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=41.2
Q ss_pred EEEEEcccCCCC-ChHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhh--CCceeecCCCCccC
Q 017051 138 TFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS--ARPWMVTQGNHEKE 208 (378)
Q Consensus 138 ~f~~~gD~~~~~-~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~--~~P~~~v~GNHD~~ 208 (378)
.++++||+|..- ...++++.......+-+|++||+++.+.... +.+. .+..+.- .-.++.+.||||..
T Consensus 51 ~i~viGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~--e~i~-ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 51 PLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSL--ETIC-LLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred ceEEEEecCCCHHHHHHHHHhcCCCCcceEEEEeeEecCCCCcH--HHHH-HHHHhhhhCCCcEEEEecccchh
Confidence 489999998542 2233444444455678999999998665322 2211 1112211 12478899999994
No 122
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=95.25 E-value=0.027 Score=52.22 Aligned_cols=68 Identities=21% Similarity=0.228 Sum_probs=40.4
Q ss_pred EEEEEcccCCCC-ChHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhC--CceeecCCCCccC
Q 017051 138 TFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASA--RPWMVTQGNHEKE 208 (378)
Q Consensus 138 ~f~~~gD~~~~~-~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~--~P~~~v~GNHD~~ 208 (378)
.+.++||+|..- ...++++.+.....+-++++||+++.+.... +.+ ..+..+.-. .-++.+.||||..
T Consensus 44 ~i~vvGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~--evl-~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 44 PVNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVDRGYNSV--ETM-EYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEeeeEcCCCCCHH--HHH-HHHHHhhhcCCCcEEEEecccchH
Confidence 378899998542 2233444433345578999999998765321 221 112122212 2478999999974
No 123
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=95.18 E-value=0.021 Score=52.77 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=40.5
Q ss_pred EEEEcccCCCC-ChHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhh-HhhhhCCceeecCCCCccC
Q 017051 139 FAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELV-QPLASARPWMVTQGNHEKE 208 (378)
Q Consensus 139 f~~~gD~~~~~-~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~-~~l~~~~P~~~v~GNHD~~ 208 (378)
+.++||+|..- ...++++.+.....+-++++||+++.+... .+.+.... -++.....++.+.||||..
T Consensus 54 ~~ViGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s--~evl~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 54 VRVCGDTHGQYYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHS--VETITLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred ceeeccCCCCHHHHHHHHHHcCCCCcccEEEeeeEecCCCCH--HHHHHHHHHHhhccCCeEEEEecccchH
Confidence 78899998542 223445554444456788999999876532 22221111 1122234688999999974
No 124
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.054 Score=43.74 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCcEEEecCccccceeecccCCCcCCCccEEEEeCCC-CCCCCccccccccccCceecc
Q 017051 306 AIMEPLLYAASVDLVLAGHVHAYERSIRVNNGKPDPCGAVYITIGDG-GNKEGLARKYVLTYRNIFELS 373 (378)
Q Consensus 306 ~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~g~~yiv~G~g-G~~~~~~~~~~~p~~~~~e~~ 373 (378)
+.+.-+-++.+||+.++||+|..+... .+|-.||..|++ |+.......-..|+|.+..+.
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~Aye--------~eg~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiq 157 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFEAYE--------HEGKFFVNPGSATGAFNVSDTDIIVPSFVLMDIQ 157 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEEEEE--------eCCcEEeCCCcccCCCcccccCCCCCceEEEEec
Confidence 566666778899999999999987765 268899999975 555443333356777776664
No 125
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.12 Score=51.24 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHH-HHHHHHHhc-CCcE-EEecCcccc
Q 017051 261 SDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMA-IMEPLLYAA-SVDL-VLAGHVHAY 328 (378)
Q Consensus 261 ~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~-~l~~l~~~~-~vdl-vl~GH~H~y 328 (378)
-.|.+|-.+.++.. +.+-++++.|.|.-... .+. .+..+...+ ++++ ||-||.|..
T Consensus 211 i~~~~~~~~m~~~~---~idlii~lgH~~~~~~~---------e~~~~~~~ir~~~p~t~IqviGGHshir 269 (602)
T KOG4419|consen 211 ITQSEWEQDMVNTT---DIDLIIALGHSPVRDDD---------EWKSLHAEIRKVHPNTPIQVIGGHSHIR 269 (602)
T ss_pred HhccchHHHHhhcc---CccEEEEecccccccch---------hhhhHHHHHhhhCCCCceEEECchhhhh
Confidence 46678888887773 55668999999854221 122 344444444 5677 999999974
No 126
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=94.88 E-value=0.039 Score=52.55 Aligned_cols=69 Identities=20% Similarity=0.204 Sum_probs=39.9
Q ss_pred eEEEEEcccCCCCC-hHHHHHHhhcCCC-cEEEeccccccccchhhhHHHHHHhhHhhhh--CCceeecCCCCccC
Q 017051 137 ITFAVAGDLGQTGW-TKSTLDHIGQCKY-DVHLLPGDLSYADYMQHRWDTFGELVQPLAS--ARPWMVTQGNHEKE 208 (378)
Q Consensus 137 ~~f~~~gD~~~~~~-~~~~~~~i~~~~~-d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~--~~P~~~v~GNHD~~ 208 (378)
-++.++||+|.... ...+++.+..... +.+|++||+++.+... .+.+ ..+..+.- .--++.+.||||..
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~S--lEvl-~lL~~lki~~p~~v~lLRGNHE~~ 138 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWG--LETF-LLLLSWKVLLPDRVYLLRGNHESK 138 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCCCCCh--HHHH-HHHHHHhhccCCeEEEEeeecccc
Confidence 46899999986532 2233333322223 4599999999866532 2222 22222221 23478899999984
No 127
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=94.87 E-value=0.73 Score=41.44 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=42.3
Q ss_pred CCCeEEEEEcccCCCCChHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCC
Q 017051 134 QFPITFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKES 209 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~ 209 (378)
....||+.++|+|..... +. .-..-|+++++||.+.-+.. .+...|.+.+-.+.-. =-+.|.||||...
T Consensus 59 ~~~~r~VcisdtH~~~~~---i~--~~p~gDvlihagdfT~~g~~-~ev~~fn~~~gslph~-yKIVIaGNHELtF 127 (305)
T KOG3947|consen 59 PGYARFVCISDTHELTFD---IN--DIPDGDVLIHAGDFTNLGLP-EEVIKFNEWLGSLPHE-YKIVIAGNHELTF 127 (305)
T ss_pred CCceEEEEecCcccccCc---cc--cCCCCceEEeccCCccccCH-HHHHhhhHHhccCcce-eeEEEeeccceee
Confidence 567999999999865322 11 24567999999999864332 2223333333222111 1357899999954
No 128
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=94.79 E-value=0.033 Score=51.96 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=40.7
Q ss_pred EEEEEcccCCCC-ChHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhh--CCceeecCCCCccC
Q 017051 138 TFAVAGDLGQTG-WTKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS--ARPWMVTQGNHEKE 208 (378)
Q Consensus 138 ~f~~~gD~~~~~-~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~--~~P~~~v~GNHD~~ 208 (378)
.++++||+|..- ...++++.......+-+|++||+++.+... .+.+ ..+..+.- .-.++.+.||||..
T Consensus 60 ~i~vvGDIHG~~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s--~evl-~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 60 PLKICGDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQS--LETI-CLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred CeEEEeecccCHHHHHHHHHhcCCCCcceEEEeceecCCCCCc--HHHH-HHHHHhcccCCCceEEEecccchh
Confidence 489999998542 223344444344557789999999866431 2222 11222211 13578999999984
No 129
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=94.07 E-value=0.11 Score=48.53 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=39.1
Q ss_pred eEEEEEcccCCCC-ChHHHHHHhhc-CCCcEEEeccccccccchhhhHHHHHHhhH-hhhhCCceeecCCCCccC
Q 017051 137 ITFAVAGDLGQTG-WTKSTLDHIGQ-CKYDVHLLPGDLSYADYMQHRWDTFGELVQ-PLASARPWMVTQGNHEKE 208 (378)
Q Consensus 137 ~~f~~~gD~~~~~-~~~~~~~~i~~-~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~-~l~~~~P~~~v~GNHD~~ 208 (378)
-++.++||+|..- ....+++...- ..-|-++++||+++.+... .+.+.-.+. ++...--++.++||||..
T Consensus 60 ~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S--~Evl~ll~~lki~~p~~v~lLRGNHE~~ 132 (316)
T cd07417 60 EKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFS--VEVILTLFAFKLLYPNHFHLNRGNHETD 132 (316)
T ss_pred ceeEEeecccCCHHHHHHHHHhcCCCCccCeEEEEeeEecCCCCh--HHHHHHHHHhhhccCCceEEEeeccchH
Confidence 4689999998542 12223333221 1235799999999876532 222211111 111123467899999973
No 130
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=93.67 E-value=0.17 Score=54.09 Aligned_cols=85 Identities=19% Similarity=0.312 Sum_probs=54.5
Q ss_pred CCCCCCCCCceEEEEecCCCeEEEEEEcCCCCCC------cEEEEeccCCCCC---eeEEeeeeEEeeeeeccCeEEEEE
Q 017051 35 WDPKPSSHPQQVHISLAGDSHMRVTWITDDESSP------SVVEYGTSPGGYN---CGAEGESTSYRYLFYRSGKIHHTV 105 (378)
Q Consensus 35 ~~~~~~~~p~~v~l~~~~~~~~~i~W~t~~~~~~------~~v~y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~ 105 (378)
++..++..|..|.|-...+++++|.|.+...... -.++|++.+.... ..+.+ ..+.| .
T Consensus 611 lsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~-----------n~~~~--l 677 (1381)
T KOG4221|consen 611 LSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKG-----------NTTQY--L 677 (1381)
T ss_pred ccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeeccc-----------chhhh--H
Confidence 3456777788799998899999999998854321 1334443332111 11111 11222 3
Q ss_pred ECCCCCCCEEEEEeCc--------cCceeEEECCC
Q 017051 106 IGPLEHDTVYFYRCGR--------QGPEFEFKTPP 132 (378)
Q Consensus 106 l~~L~p~t~Y~Y~v~~--------~s~~~~F~t~p 132 (378)
+++|+|+|.|.+||.. .|++..+.|+-
T Consensus 678 ~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~ 712 (1381)
T KOG4221|consen 678 FNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPE 712 (1381)
T ss_pred hhcCCCCceEEEEEEEeccCCCCCcccceeccCcc
Confidence 5689999999999863 26788888864
No 131
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=93.58 E-value=0.086 Score=46.18 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=53.2
Q ss_pred EEEEcccCCCCCh------HHHHHHhh-cCCCcEEEeccccccccchhh---------hH-HHH----HHhhHhhhhCCc
Q 017051 139 FAVAGDLGQTGWT------KSTLDHIG-QCKYDVHLLPGDLSYADYMQH---------RW-DTF----GELVQPLASARP 197 (378)
Q Consensus 139 f~~~gD~~~~~~~------~~~~~~i~-~~~~d~vi~~GDl~~~~~~~~---------~~-~~~----~~~~~~l~~~~P 197 (378)
|++++|.+..... .+.++.+. ..+|+.+|++|++++...... .. ..+ ...+..+...++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 5788888776332 22333345 778999999999997533210 11 111 223344455689
Q ss_pred eeecCCCCccCCCCcc-cchhhhc-hhcccCCCCCCCCCCCceEEEEeCCEEEEEEcC
Q 017051 198 WMVTQGNHEKESIPLI-MDAFQSY-NARWKMPFEESGSNSNLYYSFDVAGAHLIMLGS 253 (378)
Q Consensus 198 ~~~v~GNHD~~~~~~~-~~~~~~~-~~~~~~p~~~~~~~~~~~ysf~~g~v~fi~ldt 253 (378)
++.+||+||....... +..+... ......- ..-..-..-+.+.++++.|++...
T Consensus 81 vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~~--~~~~~~sNP~~~~i~~~~i~~~s~ 136 (209)
T PF04042_consen 81 VVLVPGPNDPTSSPVLPQPPLHSKLFPKLKKY--SNIHFVSNPCRISINGQEIGVTSG 136 (209)
T ss_dssp EEEE--TTCTT-S-SCSB----TTTTCHHCTT--TTEEE--CSEEEEETTEEEEE-SS
T ss_pred EEEeCCCccccccCCCCCCCCCHHHHhhhhhc--CceEEeCCCeEEEEeCCcEEEECC
Confidence 9999999999544111 1111100 0000000 000001234557888999888865
No 132
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=93.53 E-value=0.11 Score=48.50 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCcEEEecCc
Q 017051 305 MAIMEPLLYAASVDLVLAGHV 325 (378)
Q Consensus 305 ~~~l~~l~~~~~vdlvl~GH~ 325 (378)
.+++...+++++.++++=||.
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 578899999999999999998
No 133
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=93.23 E-value=0.78 Score=31.79 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=39.8
Q ss_pred CceEEEEecCCCeEEEEEEcCCCCC--CcEEEEeccCCCCCeeEEeeeeEEeeeeeccCeEEEEEECCCCCCCEEEEEeC
Q 017051 43 PQQVHISLAGDSHMRVTWITDDESS--PSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYRCG 120 (378)
Q Consensus 43 p~~v~l~~~~~~~~~i~W~t~~~~~--~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~l~~L~p~t~Y~Y~v~ 120 (378)
|..+++....++++.|+|....... .-.++|........ .... .. ......+...+.+|+|++.|.++|.
T Consensus 4 p~~~~~~~~~~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~--~~~~--~~----~~~~~~~~~~i~~L~~~~~Y~v~v~ 75 (83)
T smart00060 4 PSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEG--SSWK--EV----NVTPSSTSYTLTGLKPGTEYEFRVR 75 (83)
T ss_pred CCcEEEEEEeCCEEEEEECCCCCCCCCccEEEEEEEEecCC--CccE--EE----EecCCccEEEEeCcCCCCEEEEEEE
Confidence 3346666556669999997542221 23455554332111 0000 00 0111157788999999999999985
Q ss_pred c
Q 017051 121 R 121 (378)
Q Consensus 121 ~ 121 (378)
.
T Consensus 76 a 76 (83)
T smart00060 76 A 76 (83)
T ss_pred E
Confidence 3
No 134
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=92.29 E-value=1.3 Score=31.69 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=39.6
Q ss_pred CCceEEEEecCCCeEEEEEEcCCCC----CCcEEEEeccCCCCCeeEEeeeeEEeeeeeccCeEEEEEECCCCCCCEEEE
Q 017051 42 HPQQVHISLAGDSHMRVTWITDDES----SPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFY 117 (378)
Q Consensus 42 ~p~~v~l~~~~~~~~~i~W~t~~~~----~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~l~~L~p~t~Y~Y 117 (378)
.|..+.+.....+++.|.|...... ..-.|+|........ .. .. ........+.+.+|.|++.|.+
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~-------~~--~~-~~~~~~~~~~i~~l~p~~~Y~~ 72 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDW-------KE--VE-VTPGSETSYTLTGLKPGTEYEF 72 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCC-------EE--ee-ccCCcccEEEEccccCCCEEEE
Confidence 4454555555679999999876432 112333433220000 00 00 1112456677899999999999
Q ss_pred EeCc
Q 017051 118 RCGR 121 (378)
Q Consensus 118 ~v~~ 121 (378)
+|..
T Consensus 73 ~v~a 76 (93)
T cd00063 73 RVRA 76 (93)
T ss_pred EEEE
Confidence 9854
No 135
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=89.70 E-value=1.2 Score=47.68 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=52.2
Q ss_pred CCCCCCceEEEEecCCCeEEEEEEcCC----CCCCcEEEEeccCCCCCeeEEeeeeEEeeeeeccCeEEEEEECCCCCCC
Q 017051 38 KPSSHPQQVHISLAGDSHMRVTWITDD----ESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDT 113 (378)
Q Consensus 38 ~~~~~p~~v~l~~~~~~~~~i~W~t~~----~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~l~~L~p~t 113 (378)
.+..+|..+.+...+++++.|.|.... ....-.|+|....+... ..... ...+..-.++|+||+|+|
T Consensus 818 ~P~~ap~~~~~~~~s~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~~-----~~~~~----~i~~~~~~~~ltgL~~~T 888 (1051)
T KOG3513|consen 818 EPPVAPTKLSAKPLSSSEVNLSWKPPLWDNGKLTGYEVKYWKINEKEG-----SLSRV----QIAGNRTSWRLTGLEPNT 888 (1051)
T ss_pred CCCCCCccceeecccCceEEEEecCcCccCCccceeEEEEEEcCCCcc-----cccce----eecCCcceEeeeCCCCCc
Confidence 456688888888778999999995442 22456899988775431 11110 122456667899999999
Q ss_pred EEEEEeCc
Q 017051 114 VYFYRCGR 121 (378)
Q Consensus 114 ~Y~Y~v~~ 121 (378)
.|++.+..
T Consensus 889 ~Y~~~vrA 896 (1051)
T KOG3513|consen 889 KYRFYVRA 896 (1051)
T ss_pred eEEEEEEE
Confidence 99999864
No 136
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=85.28 E-value=0.7 Score=31.82 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=8.1
Q ss_pred CccEEEEeCCCCC
Q 017051 342 CGAVYITIGDGGN 354 (378)
Q Consensus 342 ~g~~yiv~G~gG~ 354 (378)
++|+||++|+||+
T Consensus 1 kapVhiv~G~aG~ 13 (62)
T PF14008_consen 1 KAPVHIVVGAAGN 13 (62)
T ss_dssp TS-EEEEE--S-T
T ss_pred CCCEEEEECcCCC
Confidence 4799999999999
No 137
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=84.91 E-value=0.5 Score=25.98 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=10.5
Q ss_pred cchhhHHHHHHHhhcCC
Q 017051 2 ELKFVLTAFVFISATVT 18 (378)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (378)
+|.++.++.++.+++|+
T Consensus 8 Kkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 8 KKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 44455555555599986
No 138
>PRK13792 lysozyme inhibitor; Provisional
Probab=82.72 E-value=7.1 Score=31.14 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=14.3
Q ss_pred CcchhhHHHHHHH--hhcCC
Q 017051 1 MELKFVLTAFVFI--SATVT 18 (378)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~ 18 (378)
||+.|.++|+.+. |++|.
T Consensus 1 mk~~l~~ll~~~~~lLsaCs 20 (127)
T PRK13792 1 MKKALWLLLAAVPVVLVACG 20 (127)
T ss_pred ChhHHHHHHHHHHhheeccc
Confidence 8888888888887 77775
No 139
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.08 E-value=3.6 Score=39.76 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=46.1
Q ss_pred CeEEEEEcccCCCCChHHHHHHhh----cC-CCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCC
Q 017051 136 PITFAVAGDLGQTGWTKSTLDHIG----QC-KYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNH 205 (378)
Q Consensus 136 ~~~f~~~gD~~~~~~~~~~~~~i~----~~-~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNH 205 (378)
+.+|+++||.. .....++++++ +. ..|++|++|++...+....+|..+.+-...+. +|+|+.-+|-
T Consensus 5 ~~kILv~Gd~~--Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~vP--iptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVE--GRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKVP--IPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCcc--ccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccCc--eeEEEecCCC
Confidence 46999999973 34566666663 33 47999999999976555667776655544443 7888777665
No 140
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=79.54 E-value=9.3 Score=41.16 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=48.4
Q ss_pred CCCceEEEEecCCCeEEEEEEcCCCCCCcEEEEeccC----CCCCeeEEeeeeEEeeeeeccCeEEEEEECCCCCCCEEE
Q 017051 41 SHPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSP----GGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYF 116 (378)
Q Consensus 41 ~~p~~v~l~~~~~~~~~i~W~t~~~~~~~~v~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~l~~L~p~t~Y~ 116 (378)
..|.+|++.-.+++.++++|.-......+...|.... ...+..+. + ......+. +.+++-+|.|-..|.
T Consensus 616 gpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~-~-----vp~~~~~~-~sa~vv~L~Pwv~Ye 688 (1051)
T KOG3513|consen 616 GPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVT-T-----VPGNITGD-ESATVVNLSPWVEYE 688 (1051)
T ss_pred CCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEee-E-----CCCcccCc-cceeEEccCCCcceE
Confidence 3677888886779999999998765434455554432 22222222 2 11123344 678899999999999
Q ss_pred EEeCc
Q 017051 117 YRCGR 121 (378)
Q Consensus 117 Y~v~~ 121 (378)
|||..
T Consensus 689 FRV~A 693 (1051)
T KOG3513|consen 689 FRVVA 693 (1051)
T ss_pred EEEEE
Confidence 99864
No 141
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=79.41 E-value=10 Score=31.22 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=13.1
Q ss_pred EEECCCCCCCEEEEEe
Q 017051 104 TVIGPLEHDTVYFYRC 119 (378)
Q Consensus 104 ~~l~~L~p~t~Y~Y~v 119 (378)
-.+++|.|||+|+.+.
T Consensus 104 YqVtNL~pGTkY~isY 119 (184)
T PF07353_consen 104 YQVTNLQPGTKYYISY 119 (184)
T ss_pred EEeeccCCCcEEEEEE
Confidence 3468999999998774
No 142
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=79.23 E-value=5 Score=35.64 Aligned_cols=66 Identities=23% Similarity=0.267 Sum_probs=38.7
Q ss_pred EEEEcccCCCCChHHHHHHhh---cCCCcEEEeccccccccchhhhHHHHHHhh-HhhhhCCceeecCCCCccC
Q 017051 139 FAVAGDLGQTGWTKSTLDHIG---QCKYDVHLLPGDLSYADYMQHRWDTFGELV-QPLASARPWMVTQGNHEKE 208 (378)
Q Consensus 139 f~~~gD~~~~~~~~~~~~~i~---~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~-~~l~~~~P~~~v~GNHD~~ 208 (378)
+.+.||+|.. ...++.... ...-.--+++||+++.+-. .-+.|.-.+ -++.-.--+..+.||||..
T Consensus 45 vtvcGDIHGQ--f~Dllelf~igG~~~~t~YLFLGDyVDRG~~--SvEt~lLLl~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 45 VTVCGDIHGQ--FYDLLELFRIGGDVPETNYLFLGDYVDRGYY--SVETFLLLLALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred cEEeecccch--HHHHHHHHHhCCCCCCCceEeecchhccccc--hHHHHHHHHHHhhcCcceeEEeeccchhh
Confidence 4678999854 344554443 2222457899999986543 234443221 1222224477899999985
No 143
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=77.43 E-value=2.7 Score=39.50 Aligned_cols=70 Identities=17% Similarity=0.091 Sum_probs=40.3
Q ss_pred EEEEEcccCCCCChHHHHHHhhcC---CCc-EEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCC
Q 017051 138 TFAVAGDLGQTGWTKSTLDHIGQC---KYD-VHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESI 210 (378)
Q Consensus 138 ~f~~~gD~~~~~~~~~~~~~i~~~---~~d-~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~ 210 (378)
-+.++||+|... ..+++-+... .|+ -.+++||+++.+...-+-=.+.-.. ++.-.--++...||||....
T Consensus 60 PV~i~GDiHGq~--~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a~-Ki~yp~~~~lLRGNHE~~~i 133 (331)
T KOG0374|consen 60 PVKIVGDIHGQF--GDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETICLLFAL-KIKYPENVFLLRGNHECASI 133 (331)
T ss_pred CEEEEccCcCCH--HHHHHHHHhcCCCCCcccEEEecccccCCccceEEeehhhhh-hhhCCceEEEeccccccccc
Confidence 578899998553 3444444322 254 5899999998765411100011111 11122568899999999643
No 144
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=75.72 E-value=19 Score=33.10 Aligned_cols=75 Identities=8% Similarity=0.008 Sum_probs=44.9
Q ss_pred CCCeEEEEEcccCCCCCh-----HHHHHHhh-----cCCCcEEEecccccccc-----ch----hhhHHHHHH-hh---H
Q 017051 134 QFPITFAVAGDLGQTGWT-----KSTLDHIG-----QCKYDVHLLPGDLSYAD-----YM----QHRWDTFGE-LV---Q 190 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~-----~~~~~~i~-----~~~~d~vi~~GDl~~~~-----~~----~~~~~~~~~-~~---~ 190 (378)
+...+|+++||++..... +.+++.+. ..-|-.+|++|+++... .. .+.++.+.. .+ .
T Consensus 25 ~~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp 104 (291)
T PTZ00235 25 DKRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFK 104 (291)
T ss_pred CCceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhCh
Confidence 456889999999876531 22223332 12388999999998642 11 112233322 11 2
Q ss_pred hhhhCCceeecCCCCccC
Q 017051 191 PLASARPWMVTQGNHEKE 208 (378)
Q Consensus 191 ~l~~~~P~~~v~GNHD~~ 208 (378)
.+....-+++|||-.|-.
T Consensus 105 ~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 105 LILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHhcCeEEEECCCCCCC
Confidence 244557799999999973
No 145
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=73.90 E-value=12 Score=40.77 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=46.5
Q ss_pred CCceEEEEecCCCeEEEEEEcCCCCCCcEEEEeccCCCCCeeEEeeeeEEeeeeeccCeEEEEEECCCCCCCEEEEEeCc
Q 017051 42 HPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYRCGR 121 (378)
Q Consensus 42 ~p~~v~l~~~~~~~~~i~W~t~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~l~~L~p~t~Y~Y~v~~ 121 (378)
.|.++....+...++.|.|............|..--... -.+... ......++.+|.||+|.|.|.|||..
T Consensus 523 gp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~---~~~~~~------~~~~n~~e~ti~gL~k~TeY~~~vvA 593 (1381)
T KOG4221|consen 523 GPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED---DTGKEL------RVENNATEYTINGLEKYTEYSIRVVA 593 (1381)
T ss_pred CCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcC---CCCceE------EEecCccEEEeecCCCccceEEEEEE
Confidence 444533333448899999999864444444443210000 001111 11223556778899999999999864
Q ss_pred --------cCceeEEECC
Q 017051 122 --------QGPEFEFKTP 131 (378)
Q Consensus 122 --------~s~~~~F~t~ 131 (378)
.|...+|+|+
T Consensus 594 ~N~~G~g~sS~~i~V~Tl 611 (1381)
T KOG4221|consen 594 YNSAGSGVSSADITVRTL 611 (1381)
T ss_pred ecCCCCCCCCCceEEEec
Confidence 2566777774
No 146
>PRK11627 hypothetical protein; Provisional
Probab=71.63 E-value=10 Score=32.65 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=15.9
Q ss_pred CcchhhHHHH-HHHhhcCCCC
Q 017051 1 MELKFVLTAF-VFISATVTTA 20 (378)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~ 20 (378)
|.|||+|.|+ +++|++|+..
T Consensus 1 mlkklll~l~a~~~L~gCA~~ 21 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCATP 21 (192)
T ss_pred ChHHHHHHHHHHHHHHhhcCC
Confidence 7889888666 7779999854
No 147
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=71.36 E-value=7.6 Score=33.87 Aligned_cols=65 Identities=25% Similarity=0.325 Sum_probs=38.0
Q ss_pred EEEEcccCCCCChHHHHHHhh--cCCCcE-EEeccccccccchhhhHHHHHHhhHhhhhC--CceeecCCCCccC
Q 017051 139 FAVAGDLGQTGWTKSTLDHIG--QCKYDV-HLLPGDLSYADYMQHRWDTFGELVQPLASA--RPWMVTQGNHEKE 208 (378)
Q Consensus 139 f~~~gD~~~~~~~~~~~~~i~--~~~~d~-vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~--~P~~~v~GNHD~~ 208 (378)
+-+.||+|.. .-.+++... -.-||- -|++||+++.+-. ..+.|.-.+ -+..+ ..+-.+.||||..
T Consensus 48 VTvCGDIHGQ--FyDL~eLFrtgG~vP~tnYiFmGDfVDRGyy--SLEtfT~l~-~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 48 VTVCGDIHGQ--FYDLLELFRTGGQVPDTNYIFMGDFVDRGYY--SLETFTLLL-LLKARYPAKITLLRGNHESR 117 (306)
T ss_pred eeEeeccchh--HHHHHHHHHhcCCCCCcceEEeccccccccc--cHHHHHHHH-HHhhcCCceeEEeeccchhh
Confidence 4578999854 334444443 233443 6889999986543 334443322 23333 3456789999984
No 148
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=68.45 E-value=7.8 Score=34.69 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=37.6
Q ss_pred EEEEcccCCCCChHHHHHHhh--cCCCcE-EEeccccccccchhhhHHHHHHhhHhhh--hCCceeecCCCCccC
Q 017051 139 FAVAGDLGQTGWTKSTLDHIG--QCKYDV-HLLPGDLSYADYMQHRWDTFGELVQPLA--SARPWMVTQGNHEKE 208 (378)
Q Consensus 139 f~~~gD~~~~~~~~~~~~~i~--~~~~d~-vi~~GDl~~~~~~~~~~~~~~~~~~~l~--~~~P~~~v~GNHD~~ 208 (378)
..+.||.|.. ....++.++ ...||. .+++||.++.+....+- -..+-.+. -.--+-.++||||..
T Consensus 62 vtvcGDvHGq--f~dl~ELfkiGG~~pdtnylfmGDyvdrGy~Svet---VS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 62 VTVCGDVHGQ--FHDLIELFKIGGLAPDTNYLFMGDYVDRGYYSVET---VSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred eEEecCcchh--HHHHHHHHHccCCCCCcceeeeeeecccccchHHH---HHHHHHhhccccceeEEecCchHHH
Confidence 5778999854 344555444 455664 68899999865432221 11222221 112355689999984
No 149
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=68.08 E-value=23 Score=37.19 Aligned_cols=97 Identities=18% Similarity=0.346 Sum_probs=58.8
Q ss_pred CccccCCCCCCcccCCCCCCCCCCceEEEEecCCCeEEEEEEcCCCC-CCcEEEEeccC----C-CCCeeEEeeeeEEee
Q 017051 20 AEYIRPQPRRTLEFPWDPKPSSHPQQVHISLAGDSHMRVTWITDDES-SPSVVEYGTSP----G-GYNCGAEGESTSYRY 93 (378)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~~~~~~~i~W~t~~~~-~~~~v~y~~~~----~-~~~~~~~~~~~~~~~ 93 (378)
.+|.|-+ ...+++||+.+++ +|..+ +.....+++.+.|.-..+. +...|.|...= . ......-|....|.-
T Consensus 314 ~gyyRA~-~Dp~~mpCT~PPS-aP~nl-is~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P 390 (996)
T KOG0196|consen 314 NGYYRAD-SDPPSMPCTRPPS-APRNL-ISNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTP 390 (996)
T ss_pred CCcccCC-CCCCCCCCCCCCC-cccee-eeecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECC
Confidence 3444443 3456789987766 78887 4447799999999887543 44556664431 1 111222222223221
Q ss_pred eeeccC-eEEEEEECCCCCCCEEEEEeCc
Q 017051 94 LFYRSG-KIHHTVIGPLEHDTVYFYRCGR 121 (378)
Q Consensus 94 ~~~~~~-~~h~~~l~~L~p~t~Y~Y~v~~ 121 (378)
...+ ..-+|+++||.|-+.|.|.|..
T Consensus 391 --~q~gLt~~~V~v~~L~ah~~YTFeV~A 417 (996)
T KOG0196|consen 391 --RQRGLTETSVTVSDLLAHTNYTFEVEA 417 (996)
T ss_pred --CCCCcccceEEEeccccccccEEEEEE
Confidence 1112 3567889999999999999863
No 150
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=66.36 E-value=35 Score=26.03 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=39.3
Q ss_pred CCCceEEEEecCCCeEEEEEEcCCCC---CCcEEEEeccCCCCCeeEEeeeeEEeeeeeccCeEEEEEECCCC--CCCEE
Q 017051 41 SHPQQVHISLAGDSHMRVTWITDDES---SPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLE--HDTVY 115 (378)
Q Consensus 41 ~~p~~v~l~~~~~~~~~i~W~t~~~~---~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~l~~L~--p~t~Y 115 (378)
.+|+.|.+... .-.-++.|.-.... ..-.|+|........ .....+... ...++.|+... +...|
T Consensus 23 p~P~nv~~~s~-nf~~iL~W~~~~~~~~~~~ytVq~~~~~~~~W-~~v~~C~~i--------~~~~Cdlt~~~~~~~~~Y 92 (107)
T PF01108_consen 23 PAPQNVTVDSV-NFKHILRWDPGPGSPPNVTYTVQYKKYGSSSW-KDVPGCQNI--------TETSCDLTDETSDPSESY 92 (107)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEESTTSSSTEEEEEEEEESSTSCE-EEECCEEEE--------SSSEEECTTCCTTTTSEE
T ss_pred CCCCeeEEEEE-CCceEEEeCCCCCCCCCeEEEEEEEecCCcce-eeccceecc--------cccceeCcchhhcCcCCE
Confidence 37888877744 44578899984322 224788873332222 222222211 12455566644 68889
Q ss_pred EEEeCc
Q 017051 116 FYRCGR 121 (378)
Q Consensus 116 ~Y~v~~ 121 (378)
..||..
T Consensus 93 ~~rV~A 98 (107)
T PF01108_consen 93 YARVRA 98 (107)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999865
No 151
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=63.95 E-value=25 Score=27.37 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=14.8
Q ss_pred CcchhhHHHHHHHhhcCCC
Q 017051 1 MELKFVLTAFVFISATVTT 19 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (378)
|+|-++++|-++++.+|.+
T Consensus 1 Mrk~~~~~l~~~lLvGCsS 19 (123)
T COG5633 1 MRKLCLLSLALLLLVGCSS 19 (123)
T ss_pred CceehHHHHHHHHhhccCC
Confidence 7777777888888889964
No 152
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=63.73 E-value=12 Score=28.42 Aligned_cols=63 Identities=14% Similarity=0.335 Sum_probs=26.5
Q ss_pred CCCCceEEEEecCCCeEEEEEEcCCCCCCcEEEEeccCCCCCeeEEeeeeEEeeeeeccCeEEEEEECCCCCCCEEEEEe
Q 017051 40 SSHPQQVHISLAGDSHMRVTWITDDESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYRC 119 (378)
Q Consensus 40 ~~~p~~v~l~~~~~~~~~i~W~t~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~l~~L~p~t~Y~Y~v 119 (378)
...|..+.+- ....++|.|.-.+. ....+.... .... . . -.++-.-.++++.++||+ |.|.+
T Consensus 31 ~f~P~~i~v~--~G~~v~l~~~N~~~-~~h~~~i~~----~~~~---~-----~--l~~g~~~~~~f~~~~~G~-y~~~C 92 (104)
T PF13473_consen 31 GFSPSTITVK--AGQPVTLTFTNNDS-RPHEFVIPD----LGIS---K-----V--LPPGETATVTFTPLKPGE-YEFYC 92 (104)
T ss_dssp EEES-EEEEE--TTCEEEEEEEE-SS-S-EEEEEGG----GTEE---E-----E--E-TT-EEEEEEEE-S-EE-EEEB-
T ss_pred eEecCEEEEc--CCCeEEEEEEECCC-CcEEEEECC----CceE---E-----E--ECCCCEEEEEEcCCCCEE-EEEEc
Confidence 4466666443 34556777876542 223343322 1100 0 0 123344455566677776 77766
Q ss_pred C
Q 017051 120 G 120 (378)
Q Consensus 120 ~ 120 (378)
.
T Consensus 93 ~ 93 (104)
T PF13473_consen 93 T 93 (104)
T ss_dssp S
T ss_pred C
Confidence 5
No 153
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=62.44 E-value=5.9 Score=29.95 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=19.5
Q ss_pred CcchhhHHHHHHHhhcCCCCcccc
Q 017051 1 MELKFVLTAFVFISATVTTAEYIR 24 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (378)
|||.++.+.+.|++++|+...|.-
T Consensus 1 mKk~ll~~~lallLtgCatqt~~~ 24 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCATQTFTV 24 (97)
T ss_pred CcHHHHHHHHHHHHcccceeEEEe
Confidence 888888888889999999766653
No 154
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=61.98 E-value=24 Score=31.69 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=49.2
Q ss_pred CCCeEEEEEcccCCCCChHHHHHHhhcCCCcEEEeccccccccchh---hhHHHHHHhhHhhhhCCceeecCCCCcc
Q 017051 134 QFPITFAVAGDLGQTGWTKSTLDHIGQCKYDVHLLPGDLSYADYMQ---HRWDTFGELVQPLASARPWMVTQGNHEK 207 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~~~~~~~~i~~~~~d~vi~~GDl~~~~~~~---~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 207 (378)
++..+|++.+|++. ......++.+.+.+|+++|+.|=.+|-.+.. ...+.-.+-++.+....+--.|..-|=.
T Consensus 174 dg~~~i~faSDvqG-p~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHHll 249 (304)
T COG2248 174 DGKSSIVFASDVQG-PINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHHLL 249 (304)
T ss_pred cCCeEEEEcccccC-CCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeehhh
Confidence 46688999999963 3446789999999999999999999654431 2223333445555555555556666655
No 155
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=60.89 E-value=23 Score=32.81 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=15.2
Q ss_pred EEEECCCCCCCEEEEEeC
Q 017051 103 HTVIGPLEHDTVYFYRCG 120 (378)
Q Consensus 103 ~~~l~~L~p~t~Y~Y~v~ 120 (378)
..+|.+|+|+|+||+.|-
T Consensus 16 ~~t~~~L~p~t~YyfdVF 33 (300)
T PF10179_consen 16 NQTLSGLKPDTTYYFDVF 33 (300)
T ss_pred eEEeccCCCCCeEEEEEE
Confidence 446789999999999975
No 156
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=60.54 E-value=14 Score=34.62 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=37.7
Q ss_pred EEEEEcccCCCCChHHHHHHhh-cCCC--cEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccC
Q 017051 138 TFAVAGDLGQTGWTKSTLDHIG-QCKY--DVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKE 208 (378)
Q Consensus 138 ~f~~~gD~~~~~~~~~~~~~i~-~~~~--d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~ 208 (378)
-+-+.||+|.. .-.+++..+ -.+| ---+++||.++.+...-+--.+.-.+ ++.-...++...||||-.
T Consensus 89 PiTVCGDIHGQ--f~DLmKLFEVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsL-Ki~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 89 PITVCGDIHGQ--FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSL-KINYPKTLFLLRGNHECR 159 (517)
T ss_pred CeeEecccchH--HHHHHHHHHccCCcccceeEeeccccccceeeeehHHHHHHH-hcCCCCeEEEecCCcchh
Confidence 36788999854 234444443 2223 34789999998654311111111111 122225678899999984
No 157
>PRK10301 hypothetical protein; Provisional
Probab=55.77 E-value=1e+02 Score=24.44 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=9.8
Q ss_pred CCCceEEEEecC
Q 017051 41 SHPQQVHISLAG 52 (378)
Q Consensus 41 ~~p~~v~l~~~~ 52 (378)
..|.+|.|+|.+
T Consensus 43 ~~P~~V~L~F~e 54 (124)
T PRK10301 43 AAPQALTLNFSE 54 (124)
T ss_pred cCCCEEEEEcCC
Confidence 478999998876
No 158
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=55.64 E-value=4.9 Score=25.21 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=12.8
Q ss_pred CcchhhHHH--HHHHhhcCCCCcccc
Q 017051 1 MELKFVLTA--FVFISATVTTAEYIR 24 (378)
Q Consensus 1 ~~~~~~~~~--~~~~~~~~~~~~~~~ 24 (378)
|+|.+++++ +.++++.|++ -++|
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa-N~iR 25 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA-NYIR 25 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh-ccee
Confidence 777644433 3445888873 4443
No 159
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=54.27 E-value=9.2 Score=31.47 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=15.2
Q ss_pred CcchhhHHHHHHHhhcCCC
Q 017051 1 MELKFVLTAFVFISATVTT 19 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (378)
|.|.+++++++++|++|+.
T Consensus 1 Mrk~l~~~~l~l~LaGCAt 19 (151)
T PRK13883 1 MRKIVLLALLALALGGCAT 19 (151)
T ss_pred ChhHHHHHHHHHHHhcccC
Confidence 6777777777888999984
No 160
>PRK11443 lipoprotein; Provisional
Probab=52.62 E-value=9.2 Score=30.42 Aligned_cols=17 Identities=12% Similarity=0.258 Sum_probs=14.2
Q ss_pred chhhHHHHHHHhhcCCC
Q 017051 3 LKFVLTAFVFISATVTT 19 (378)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (378)
|+|++++++++|++|+.
T Consensus 2 k~~~~~~~~~lLsgCa~ 18 (124)
T PRK11443 2 KKFIAPLLALLLSGCQI 18 (124)
T ss_pred hHHHHHHHHHHHHhccC
Confidence 58888888889999974
No 161
>PHA03376 BARF1; Provisional
Probab=52.11 E-value=91 Score=26.88 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=32.7
Q ss_pred CCeEEEEEEcCCCCCCcEEEEeccCCCCCeeEEeeeeEEeeeeeccCeEEEEEECCCCCCCEEEEEeC
Q 017051 53 DSHMRVTWITDDESSPSVVEYGTSPGGYNCGAEGESTSYRYLFYRSGKIHHTVIGPLEHDTVYFYRCG 120 (378)
Q Consensus 53 ~~~~~i~W~t~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~l~~L~p~t~Y~Y~v~ 120 (378)
..+|.|.|+-+....+..+.|....+...... +-..+... ..+.-.....|.+|.+.-.=.|++.
T Consensus 41 a~~MrIrWqKs~p~~~~VvL~~~ggdVv~~Qm--EyRGrtD~-~~~~gnvsLvI~~l~lSDdGtY~C~ 105 (221)
T PHA03376 41 GPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEW--PFRGFFDI-HRSANTFFLVVTAANISHDGNYLCR 105 (221)
T ss_pred CCceEEEEEecCCCCCCEEEEEcCCeeeeeee--ccccEEEE-EecCCeEEEEEEeeeecCCceEEEE
Confidence 58899999998532456677765543211111 11111111 1112344555666666555555553
No 162
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=51.73 E-value=15 Score=32.21 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=13.6
Q ss_pred cchhhHHHHHHHhhcCCCC
Q 017051 2 ELKFVLTAFVFISATVTTA 20 (378)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (378)
|++|+++|++|++++|+..
T Consensus 1 mk~i~~l~l~lll~~C~~~ 19 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCSTN 19 (216)
T ss_pred ChHHHHHHHHHHHHhhcCC
Confidence 4556666688889999754
No 163
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=51.39 E-value=43 Score=32.08 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=41.6
Q ss_pred HHHHHHHhhhccCCCCCeEEEEecccc-ccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccceee
Q 017051 264 YRWLKDDLSKVDRKKTPWLLVLLHVPW-YNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYERSI 332 (378)
Q Consensus 264 ~~WL~~~L~~~~~~~~~~~iv~~H~P~-~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 332 (378)
.+-+..+++.+++ ..+-+|++.|+.. |.... ...+.++..-+...++++++.+|-|..+-..
T Consensus 210 ~~~~~~~v~~a~k-~adlviv~~HwG~ey~~~p------~~~q~~~a~~lidAGa~iIvGhhpHvlqpiE 272 (372)
T COG2843 210 LERVLAAVLAAKK-GADLVIVQPHWGVEYAYEP------AAGQRALARRLIDAGADIIVGHHPHVLQPIE 272 (372)
T ss_pred hhhhHHHHHhhhc-cCCEEEEeccccccccCCC------cHHHHHHHHHHHhcCcCeEecCCCCcCcceE
Confidence 4445555666655 6677999999843 32211 1235667666777999999999999877554
No 164
>PRK09810 entericidin A; Provisional
Probab=51.13 E-value=9.6 Score=23.76 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=10.0
Q ss_pred CcchhhHHHH--HHHhhcCCC
Q 017051 1 MELKFVLTAF--VFISATVTT 19 (378)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~~~ 19 (378)
|+|+++++++ ++.+++|..
T Consensus 1 mMkk~~~l~~~~~~~L~aCNT 21 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTGCNT 21 (41)
T ss_pred ChHHHHHHHHHHHHHHhhhhh
Confidence 5666444433 334667754
No 165
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=49.12 E-value=13 Score=37.67 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=29.7
Q ss_pred hhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCcc
Q 017051 158 IGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (378)
Q Consensus 158 i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 207 (378)
|++.-.|-+-++||+.+.+... +. .++.|...--+=..|||||.
T Consensus 180 IqrL~VDhLHIvGDIyDRGp~p---d~---ImD~Lm~~hsvDIQWGNHDI 223 (640)
T PF06874_consen 180 IQRLAVDHLHIVGDIYDRGPRP---DK---IMDRLMNYHSVDIQWGNHDI 223 (640)
T ss_pred HHHHhhhheeecccccCCCCCh---hH---HHHHHhcCCCccccccchHH
Confidence 4567789999999999876542 22 33334433344458999998
No 166
>PRK10397 lipoprotein; Provisional
Probab=48.39 E-value=12 Score=29.55 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=16.0
Q ss_pred cchhhHHHHHHHhhcCCC
Q 017051 2 ELKFVLTAFVFISATVTT 19 (378)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (378)
+||++++.++++|++|++
T Consensus 1 mKKii~~~a~~~LaGCa~ 18 (137)
T PRK10397 1 MKKLAIAGALMALAGCAE 18 (137)
T ss_pred CchhHHHHHHHHhhcccc
Confidence 578999999999999985
No 167
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=47.96 E-value=74 Score=33.71 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=59.4
Q ss_pred CCCceEEEEe--cCCCeEEEEEEcCCCCC-----CcEEEEeccCCCCC-----eeEEeeeeEEeeee------eccCeEE
Q 017051 41 SHPQQVHISL--AGDSHMRVTWITDDESS-----PSVVEYGTSPGGYN-----CGAEGESTSYRYLF------YRSGKIH 102 (378)
Q Consensus 41 ~~p~~v~l~~--~~~~~~~i~W~t~~~~~-----~~~v~y~~~~~~~~-----~~~~~~~~~~~~~~------~~~~~~h 102 (378)
+.+.-+++.. ++.+++.+.|..-..+. .-.+.|...|.... ..+-|.. ++.... ....-.|
T Consensus 487 Ce~~~l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~-~W~~~~v~~~~~~p~~~~~ 565 (1025)
T KOG4258|consen 487 CEDLVLQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSN-SWNVVDVDPPDLIPNDGTH 565 (1025)
T ss_pred cccceeeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccC-cceEEeccCCcCCCccccc
Confidence 4444455544 34889999998775431 12455655552211 1122221 111110 0112244
Q ss_pred -EEEECCCCCCCEEEEEeCc------------cCceeEEECCCC--CCCeEEEEEccc
Q 017051 103 -HTVIGPLEHDTVYFYRCGR------------QGPEFEFKTPPA--QFPITFAVAGDL 145 (378)
Q Consensus 103 -~~~l~~L~p~t~Y~Y~v~~------------~s~~~~F~t~p~--~~~~~f~~~gD~ 145 (378)
...|.+|+|.|.|-|-|.. .|++.-++|.|. +.+..++.-++.
T Consensus 566 ~~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~sns 623 (1025)
T KOG4258|consen 566 PGFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNS 623 (1025)
T ss_pred cceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCc
Confidence 6789999999999998753 278888999775 445666655554
No 168
>PRK11372 lysozyme inhibitor; Provisional
Probab=47.88 E-value=51 Score=25.55 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=12.3
Q ss_pred cchhhHHHHHHHhhcCC
Q 017051 2 ELKFVLTAFVFISATVT 18 (378)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (378)
+|.+++++++++|++|.
T Consensus 3 mk~ll~~~~~~lL~gCs 19 (109)
T PRK11372 3 MKKLLIICLPVLLTGCS 19 (109)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 34466777777789996
No 169
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=47.53 E-value=27 Score=26.54 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.3
Q ss_pred ccCeEEEEEECCCCCCCEEEEEeCc
Q 017051 97 RSGKIHHTVIGPLEHDTVYFYRCGR 121 (378)
Q Consensus 97 ~~~~~h~~~l~~L~p~t~Y~Y~v~~ 121 (378)
..+-++++.+.++.+|+.|.|+|..
T Consensus 42 ~~~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 42 EYGGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred ccCCEEEEEECCCCCCCEEEEEECC
Confidence 3456888999999999999999965
No 170
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=47.36 E-value=23 Score=31.71 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=23.6
Q ss_pred EEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccc
Q 017051 282 LLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHA 327 (378)
Q Consensus 282 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~ 327 (378)
-++++|||++-......... .........+.++++ .+++-|+..
T Consensus 55 dlIItHHP~~f~~~~~~~~~-~~~~~~~~~li~~~I-~vy~~Ht~l 98 (241)
T PF01784_consen 55 DLIITHHPLFFKPLKSLTGD-DYKGKIIEKLIKNGI-SVYSAHTNL 98 (241)
T ss_dssp SEEEESS-SSSSTSSHCHCH-SHHHHHHHHHHHTT--EEEEESHHH
T ss_pred CEEEEcCchhhcCCcccccc-chhhHHHHHHHHCCC-EEEEecccc
Confidence 37889999865332211111 123444444555788 778888874
No 171
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=47.06 E-value=11 Score=32.23 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=14.7
Q ss_pred CcchhhHHHHHHHhhcCC
Q 017051 1 MELKFVLTAFVFISATVT 18 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (378)
|+++++++++.|+|++|+
T Consensus 2 ~~~~lll~~~~l~LsgCa 19 (182)
T TIGR00752 2 GKKGLLFTALCFGLTGCI 19 (182)
T ss_pred ceEEehHHHHHHHHhccc
Confidence 677777777788899997
No 172
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=46.89 E-value=12 Score=32.64 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=15.3
Q ss_pred CcchhhHHHHHHHhhcCCC
Q 017051 1 MELKFVLTAFVFISATVTT 19 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (378)
||+-+++++.+++|++|+.
T Consensus 1 mk~l~~~l~~~l~LsgCa~ 19 (215)
T PF05643_consen 1 MKKLILGLAAALLLSGCAT 19 (215)
T ss_pred ChhHHHHHHHHHHHhhccC
Confidence 7777777778889999963
No 173
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=46.42 E-value=18 Score=29.52 Aligned_cols=19 Identities=5% Similarity=0.104 Sum_probs=16.5
Q ss_pred CcchhhHHHHHHHhhcCCC
Q 017051 1 MELKFVLTAFVFISATVTT 19 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (378)
|.+.++++++.+++++|+.
T Consensus 1 mrk~~~~~~~al~LaGCaT 19 (145)
T PRK13835 1 LRRLLAACILALLLSGCQT 19 (145)
T ss_pred ChhHHHHHHHHHHHhcccc
Confidence 7777888888999999986
No 174
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=45.80 E-value=28 Score=27.15 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.4
Q ss_pred CeEEEEEECCCCCCCEEEEEeCc
Q 017051 99 GKIHHTVIGPLEHDTVYFYRCGR 121 (378)
Q Consensus 99 ~~~h~~~l~~L~p~t~Y~Y~v~~ 121 (378)
+-++++.+.++.+|+.|.|+|..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 46888999999999999999973
No 175
>PHA03008 hypothetical protein; Provisional
Probab=44.43 E-value=50 Score=28.37 Aligned_cols=43 Identities=2% Similarity=0.021 Sum_probs=29.8
Q ss_pred EEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccccc
Q 017051 282 LLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAYE 329 (378)
Q Consensus 282 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 329 (378)
-|+++|-|++.-.+.+.| ...|..-+.+-++.+.+.||.-.|.
T Consensus 163 DILITHgPP~GhLD~~vG-----C~~Ll~~I~rVKPKyHVFGh~~~~~ 205 (234)
T PHA03008 163 DILITASPPFAILDDDLA-----CGDLFSKVIKIKPKFHIFNGLTQFS 205 (234)
T ss_pred CEEEeCCCCccccccccC-----cHHHHHHHHHhCCcEEEeCCccccC
Confidence 389999999876543222 2455555567788999999966543
No 176
>PF14292 SusE: SusE outer membrane protein
Probab=44.42 E-value=74 Score=24.94 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCCCccccCCCCCCcccCCCCCCCCCCceEEEEecCCCeEEEEEEcCCCC
Q 017051 7 LTAFVFISATVTTAEYIRPQPRRTLEFPWDPKPSSHPQQVHISLAGDSHMRVTWITDDES 66 (378)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~~~~~~~i~W~t~~~~ 66 (378)
|++++++|..|....- .......-.+.++.. ..-..+-|.....+.++++|......
T Consensus 1 Ll~~~l~l~sC~~D~~-~~~~~~~~~~~l~~~--~~~~~i~L~~~~~~a~tftW~~~~~~ 57 (122)
T PF14292_consen 1 LLLALLLLTSCEDDDD-NPTLNPPSAFELNLP--ASGSSIVLDEASDNAVTFTWTAADYG 57 (122)
T ss_pred ChHHhhhhcccCCCCc-ccccCCCCceeEEcc--CCcceEEecccCCceEEEEEECCccC
Confidence 4678888889976431 111000001111111 11234444443467899999987654
No 177
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=44.03 E-value=20 Score=32.53 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=33.4
Q ss_pred HHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCc-EEEecCccc
Q 017051 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVD-LVLAGHVHA 327 (378)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vd-lvl~GH~H~ 327 (378)
+.|+..|+.-++-+.+ ++-.|.| + ..+.+.+.++++++++| +||+||+-.
T Consensus 115 ~YL~~Cl~~Ykql~i~--a~G~~~~----------E-~eqp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 115 EYLRKCLKLYKKIGVP--VVGIHCK----------E-KEMPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred HHHHHHHHHHHHhCCc--eEEEEec----------c-hhchHHHHHHHHHhCCCEEEEeCchhh
Confidence 5677777766443433 3333433 1 12458899999999998 779999964
No 178
>PRK10449 heat-inducible protein; Provisional
Probab=44.02 E-value=14 Score=29.98 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.5
Q ss_pred CcchhhHHHHHHHhhcCCC
Q 017051 1 MELKFVLTAFVFISATVTT 19 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (378)
||+.|++++++++|++|+.
T Consensus 1 mk~~~~~~~~~~~l~~C~~ 19 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVS 19 (140)
T ss_pred ChhHHHHHHHHHHHHHhcC
Confidence 8888888889999999974
No 179
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=43.39 E-value=24 Score=32.16 Aligned_cols=51 Identities=27% Similarity=0.304 Sum_probs=34.1
Q ss_pred HHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCc-EEEecCcccc
Q 017051 265 RWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVD-LVLAGHVHAY 328 (378)
Q Consensus 265 ~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vd-lvl~GH~H~y 328 (378)
+.|+..|+.-++-+.+ +.-.|.| ...+.+.+.++++++++| +||+||+=.-
T Consensus 116 ~YL~~Cl~~Ykql~i~--a~G~~~~-----------E~eqp~~i~~Ll~~~~PDIlViTGHD~~~ 167 (287)
T PF05582_consen 116 EYLNKCLKVYKQLGIP--AVGIHVP-----------EKEQPEKIYRLLEEYRPDILVITGHDGYL 167 (287)
T ss_pred HHHHHHHHHHHHcCCc--eEEEEec-----------hHHhhHHHHHHHHHcCCCEEEEeCchhhh
Confidence 5677777765433333 3333443 123568999999999998 7799999753
No 180
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=43.03 E-value=32 Score=24.99 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=18.7
Q ss_pred CeEEEEEECCCCCCCEEEEEeCc
Q 017051 99 GKIHHTVIGPLEHDTVYFYRCGR 121 (378)
Q Consensus 99 ~~~h~~~l~~L~p~t~Y~Y~v~~ 121 (378)
+-++++.+.++ +|..|.|++..
T Consensus 39 ~G~W~~~v~~~-~g~~Y~y~v~~ 60 (85)
T cd02853 39 DGWFEAEVPGA-AGTRYRYRLDD 60 (85)
T ss_pred CcEEEEEeCCC-CCCeEEEEECC
Confidence 35777899999 99999999973
No 181
>PRK10799 metal-binding protein; Provisional
Probab=40.13 E-value=65 Score=28.95 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=24.9
Q ss_pred EEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCcccc
Q 017051 283 LVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHAY 328 (378)
Q Consensus 283 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y 328 (378)
++++|||++-........ .........+.++++ .+++-|++..
T Consensus 59 lIitHHP~~~~~~~~~~~--~~~~~~~~~li~~~i-~vy~~Htn~D 101 (247)
T PRK10799 59 AVIVHHGYFWKGESPVIR--GMKRNRLKTLLANDI-NLYGWHLPLD 101 (247)
T ss_pred EEEECCchhccCCCcccc--chHHHHHHHHHHCCC-eEEEEecchh
Confidence 677999986433211111 123345555666777 6688888754
No 182
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=39.64 E-value=42 Score=25.23 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=21.2
Q ss_pred ccCeEEEEEECCCCCCCEEEEEeCc
Q 017051 97 RSGKIHHTVIGPLEHDTVYFYRCGR 121 (378)
Q Consensus 97 ~~~~~h~~~l~~L~p~t~Y~Y~v~~ 121 (378)
..+-++++.+.++.+|..|.|+|..
T Consensus 44 ~~~gvw~~~v~~~~~g~~Y~y~i~~ 68 (100)
T cd02860 44 GENGVWSVTLDGDLEGYYYLYEVKV 68 (100)
T ss_pred CCCCEEEEEeCCccCCcEEEEEEEE
Confidence 3456888999999999999999964
No 183
>PRK13791 lysozyme inhibitor; Provisional
Probab=39.62 E-value=1.4e+02 Score=23.34 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=11.1
Q ss_pred chhhHHHHHHHhhcCC
Q 017051 3 LKFVLTAFVFISATVT 18 (378)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (378)
|+++++++++++++|+
T Consensus 5 k~~~~~~~~~~ls~~~ 20 (113)
T PRK13791 5 KLIPFTLFLAALSAST 20 (113)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4466666777788885
No 184
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=38.89 E-value=28 Score=26.29 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=14.4
Q ss_pred EEEECCCCCCCEEEEEeCc
Q 017051 103 HTVIGPLEHDTVYFYRCGR 121 (378)
Q Consensus 103 ~~~l~~L~p~t~Y~Y~v~~ 121 (378)
.++|.+|+|++.|..+|..
T Consensus 68 ~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 68 SVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEEES--TTSEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEEE
Confidence 3568999999999999864
No 185
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=37.75 E-value=71 Score=28.74 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=24.3
Q ss_pred EEEEeccccccCCCCCCCCchHHHHHHHHHHHhcCCcEEEecCccc
Q 017051 282 LLVLLHVPWYNSNEAHQGEGDGMMAIMEPLLYAASVDLVLAGHVHA 327 (378)
Q Consensus 282 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~ 327 (378)
-++++|||++-.......... ..+. ...+.++++ .+++-|+..
T Consensus 59 dlIitHHP~~f~~~~~~~~~~-~~~~-~~~li~~~I-~vy~~Ht~l 101 (249)
T TIGR00486 59 DLIITHHPLIWKPLKRLIRGI-KPGR-LKILLQNDI-SLYSAHTNL 101 (249)
T ss_pred CEEEEcCccccCCcccccCCC-HHHH-HHHHHHCCC-eEEEeecch
Confidence 378889998643321111111 2333 444677887 668888764
No 186
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=36.73 E-value=25 Score=25.87 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=12.9
Q ss_pred CcchhhHH---HHHHHhhcCCC
Q 017051 1 MELKFVLT---AFVFISATVTT 19 (378)
Q Consensus 1 ~~~~~~~~---~~~~~~~~~~~ 19 (378)
|+++|++. |.+++|+||+.
T Consensus 1 mk~klll~aviLs~~LLaGCAs 22 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCVN 22 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcCC
Confidence 78887444 44457899974
No 187
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=36.32 E-value=1.1e+02 Score=30.01 Aligned_cols=75 Identities=8% Similarity=0.045 Sum_probs=45.5
Q ss_pred CCCeEEEEEcccCCCCC-h----HHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHh----------hhhCCce
Q 017051 134 QFPITFAVAGDLGQTGW-T----KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQP----------LASARPW 198 (378)
Q Consensus 134 ~~~~~f~~~gD~~~~~~-~----~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~----------l~~~~P~ 198 (378)
..+.+|+.++|...... . ..+++..+...|-.||++|-+.........-+.+.+.+.. ...+..+
T Consensus 280 ~~d~~fVfLSdV~LD~~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~~~~~~~ekT~f 359 (525)
T KOG3818|consen 280 NTDTSFVFLSDVFLDDKKVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLTCFRKDYEKTQF 359 (525)
T ss_pred CcCceEEEEehhccccHHHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhccccccccccceE
Confidence 46688999999987642 1 2233333467789999999997543222222222222221 2234678
Q ss_pred eecCCCCccC
Q 017051 199 MVTQGNHEKE 208 (378)
Q Consensus 199 ~~v~GNHD~~ 208 (378)
++|||-.|-.
T Consensus 360 IFVPGP~Dp~ 369 (525)
T KOG3818|consen 360 IFVPGPNDPW 369 (525)
T ss_pred EEecCCCCCC
Confidence 9999999874
No 188
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=35.74 E-value=2.5e+02 Score=25.51 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=15.2
Q ss_pred CCCCCCEEEEEeCc-cCceeE
Q 017051 108 PLEHDTVYFYRCGR-QGPEFE 127 (378)
Q Consensus 108 ~L~p~t~Y~Y~v~~-~s~~~~ 127 (378)
-+++|.+|.-+|.. ..+.++
T Consensus 95 ~~~~G~~Y~L~V~~~~~~~~s 115 (298)
T PF14054_consen 95 RGRPGRTYRLEVETPGGKTYS 115 (298)
T ss_pred cccCCCEEEEEEEECCCCEEE
Confidence 58899999999976 555544
No 189
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=35.39 E-value=48 Score=30.01 Aligned_cols=141 Identities=16% Similarity=0.186 Sum_probs=74.1
Q ss_pred HHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccchhhhchhcccCCCCCC
Q 017051 152 KSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEES 231 (378)
Q Consensus 152 ~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~~ 231 (378)
..+++++.+.+...++..|.-. ..|+...+..+.. -.++++.|=|=...............+.....
T Consensus 22 ~~~l~~a~~~gv~~~~~~~~~~------~~~~~~~~l~~~~---~~v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~---- 88 (258)
T PRK11449 22 EASLQRAAQAGVGKIIVPATEA------ENFARVLALAERY---QPLYAALGLHPGMLEKHSDVSLDQLQQALERR---- 88 (258)
T ss_pred HHHHHHHHHCCCCEEEEeeCCH------HHHHHHHHHHHhC---CCEEEEEeeCcCccccCCHHHHHHHHHHHHhC----
Confidence 4567777777888887777532 3455544443322 24788888886532111111122121111100
Q ss_pred CCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHHH
Q 017051 232 GSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEPL 311 (378)
Q Consensus 232 ~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l 311 (378)
.+. ..- +-=|+||-.........|.++++..|+-+.+-+.| |+.|..- ..+.+.++
T Consensus 89 ---~~~--~~a---IGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~P---v~iH~r~-------------a~~~~~~i 144 (258)
T PRK11449 89 ---PAK--VVA---VGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLP---VILHSRR-------------THDKLAMH 144 (258)
T ss_pred ---CCC--EEE---EEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCC---EEEEecC-------------ccHHHHHH
Confidence 000 011 22355664322223467999999999987655555 5567641 12567777
Q ss_pred HHhcCCcEEEecCcccccee
Q 017051 312 LYAASVDLVLAGHVHAYERS 331 (378)
Q Consensus 312 ~~~~~vdlvl~GH~H~y~r~ 331 (378)
++++++. ..|..|.|.-+
T Consensus 145 l~~~~~~--~~~i~H~fsG~ 162 (258)
T PRK11449 145 LKRHDLP--RTGVVHGFSGS 162 (258)
T ss_pred HHhcCCC--CCeEEEcCCCC
Confidence 8877642 24567776544
No 190
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=34.72 E-value=45 Score=21.77 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=11.9
Q ss_pred hhhHHHHHHHhhcCCCC
Q 017051 4 KFVLTAFVFISATVTTA 20 (378)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (378)
|.+++++.+.+++|...
T Consensus 2 KY~lL~l~l~La~CqT~ 18 (55)
T PRK13859 2 KYCLLCLALALAGCQTN 18 (55)
T ss_pred chhHHHHHHHHHhcccc
Confidence 34566777888888763
No 191
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=34.26 E-value=91 Score=22.35 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=19.4
Q ss_pred ccCeEEEEEECCCCCCCEEEEEeCc
Q 017051 97 RSGKIHHTVIGPLEHDTVYFYRCGR 121 (378)
Q Consensus 97 ~~~~~h~~~l~~L~p~t~Y~Y~v~~ 121 (378)
..|-.+.-+=.+|++|..|.|++..
T Consensus 24 ~~G~~R~F~T~~L~~G~~y~Y~v~a 48 (75)
T TIGR03000 24 GTGTVRTFTTPPLEAGKEYEYTVTA 48 (75)
T ss_pred cCccEEEEECCCCCCCCEEEEEEEE
Confidence 3455666666799999999999865
No 192
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=34.17 E-value=42 Score=28.50 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=14.7
Q ss_pred CcchhhHHHHHHHhhcCCC
Q 017051 1 MELKFVLTAFVFISATVTT 19 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (378)
|+..|.++|+++++++|..
T Consensus 1 ~~~~~~~~~~~~~~~~c~~ 19 (177)
T TIGR03516 1 MKHLIAVILLLLLLLGCKT 19 (177)
T ss_pred CceeHHHHHHHHHHhhcCC
Confidence 7666677777789999973
No 193
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=33.36 E-value=35 Score=33.33 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=27.7
Q ss_pred hcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCcc
Q 017051 159 GQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEK 207 (378)
Q Consensus 159 ~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~ 207 (378)
++...|-+-++||+-+.+... +. .+..+...-.+=.-|||||.
T Consensus 187 qrLvVDhLHiVGDIyDRGP~p---d~---Imd~L~~yhsvDiQWGNHDi 229 (648)
T COG3855 187 QRLVVDHLHIVGDIYDRGPYP---DK---IMDTLINYHSVDIQWGNHDI 229 (648)
T ss_pred HHHhhhheeeecccccCCCCc---hH---HHHHHhhcccccccccCcce
Confidence 466789999999998766542 22 23333222333457999998
No 194
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=33.17 E-value=2.6e+02 Score=22.99 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=10.9
Q ss_pred CCCCCCCEEEEEe
Q 017051 107 GPLEHDTVYFYRC 119 (378)
Q Consensus 107 ~~L~p~t~Y~Y~v 119 (378)
..|++|..|.|.-
T Consensus 108 CPl~age~ytY~~ 120 (158)
T KOG4063|consen 108 CPLSAGEDYTYLN 120 (158)
T ss_pred CcccCCCceEEEE
Confidence 4689999999985
No 195
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=30.59 E-value=37 Score=22.71 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=13.9
Q ss_pred cchhhHHHHHHHhhcCCCCccccCCC
Q 017051 2 ELKFVLTAFVFISATVTTAEYIRPQP 27 (378)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (378)
++.|.+++.++++++.+.+-|+..+|
T Consensus 2 k~i~~~~~~~~~~~~~a~AQWvV~DP 27 (55)
T PF13605_consen 2 KKILMLCVACLLLAGPARAQWVVTDP 27 (55)
T ss_pred cchHHHHHHHHhcCCcceeEEEEeCc
Confidence 33444455555555555566665554
No 196
>PRK10425 DNase TatD; Provisional
Probab=30.31 E-value=3.5e+02 Score=24.43 Aligned_cols=142 Identities=13% Similarity=0.043 Sum_probs=72.3
Q ss_pred hHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccchhhhchhcccCCCCC
Q 017051 151 TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEE 230 (378)
Q Consensus 151 ~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~ 230 (378)
...++++..+.+...++.+|--. ..|....+..+.. -.++++.|=|=....................
T Consensus 17 ~~~vl~~a~~~gv~~~i~~~~~~------~~~~~~~~l~~~~---~~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~---- 83 (258)
T PRK10425 17 RDDVVARAFAAGVNGMLITGTNL------RESQQAQKLARQY---PSCWSTAGVHPHDSSQWQAATEEAIIELAAQ---- 83 (258)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCH------HHHHHHHHHHHhC---CCEEEEEEeCcCccccCCHHHHHHHHHhccC----
Confidence 34566776677777777666543 3455544443332 2377888988542111001111111111100
Q ss_pred CCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHH
Q 017051 231 SGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEP 310 (378)
Q Consensus 231 ~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~ 310 (378)
+. .. .+-=|+||-.........|.++++.+|+-+.+-+.| |+.|.+- ..+.+.+
T Consensus 84 -----~~--~v---aIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~P---v~iH~r~-------------a~~~~l~ 137 (258)
T PRK10425 84 -----PE--VV---AIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMP---VFMHCRD-------------AHERFMA 137 (258)
T ss_pred -----CC--EE---EEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCC---eEEEEeC-------------chHHHHH
Confidence 00 01 122356664433333478999999999887654555 5667761 1156667
Q ss_pred HHHhcCCcEEEecCccccceee
Q 017051 311 LLYAASVDLVLAGHVHAYERSI 332 (378)
Q Consensus 311 l~~~~~vdlvl~GH~H~y~r~~ 332 (378)
+++++.... -.|+.|.|.-+.
T Consensus 138 iL~~~~~~~-~~~i~H~fsG~~ 158 (258)
T PRK10425 138 LLEPWLDKL-PGAVLHCFTGTR 158 (258)
T ss_pred HHHHhccCC-CCeEEEecCCCH
Confidence 777652211 135567766543
No 197
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=29.93 E-value=3.8e+02 Score=23.73 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=9.8
Q ss_pred chhhHHHHHHHhhcCCCCcc
Q 017051 3 LKFVLTAFVFISATVTTAEY 22 (378)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (378)
.+++++|++++.+.++++++
T Consensus 7 ~~~~~~~l~~~~~~~a~a~v 26 (230)
T PRK09918 7 FLFTALVLLSSSSAVHAAGM 26 (230)
T ss_pred HHHHHHHHHHhhhHhhEeeE
Confidence 34555555555554444544
No 198
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=29.88 E-value=1.1e+02 Score=21.88 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=19.9
Q ss_pred ccCeEEEEEEC-CCCCCC-EEEEEeCcc
Q 017051 97 RSGKIHHTVIG-PLEHDT-VYFYRCGRQ 122 (378)
Q Consensus 97 ~~~~~h~~~l~-~L~p~t-~Y~Y~v~~~ 122 (378)
...-+++++|. +|++|+ .|.|+|...
T Consensus 46 ~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 46 DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 34557778888 899985 999999754
No 199
>KOG4222 consensus Axon guidance receptor Dscam [Signal transduction mechanisms]
Probab=29.86 E-value=76 Score=34.76 Aligned_cols=81 Identities=25% Similarity=0.356 Sum_probs=44.2
Q ss_pred CCCCCCCCceE-EEEecC--CCeEEEEEEcCCCCCCcEEEEeccCCCCCe-eEEeeeeEEeeeeeccCeEEEEEECCCCC
Q 017051 36 DPKPSSHPQQV-HISLAG--DSHMRVTWITDDESSPSVVEYGTSPGGYNC-GAEGESTSYRYLFYRSGKIHHTVIGPLEH 111 (378)
Q Consensus 36 ~~~~~~~p~~v-~l~~~~--~~~~~i~W~t~~~~~~~~v~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~l~~L~p 111 (378)
+.+++..|..+ |++.+. .++..|+|.-.. ..|+-+..-+ +.. ...++.+.+......+...-.++|.+|.+
T Consensus 742 e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp----~d~~ng~~qg-~ki~~~~~e~tr~h~n~t~~a~~~sv~i~~l~~ 816 (1281)
T KOG4222|consen 742 EEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPP----ADVQNGILQG-YKIECSGGEKTRIHINKTTNARTGSVTIGNLVT 816 (1281)
T ss_pred ccCCCCCCCCccccccccCCCceeeEEecCCc----ccccCCcccc-eeEEeecCccccccccccccCCCCceEeccccc
Confidence 34666677775 455444 778889996652 2222221110 111 11222122221112234566788999999
Q ss_pred CCEEEEEeCc
Q 017051 112 DTVYFYRCGR 121 (378)
Q Consensus 112 ~t~Y~Y~v~~ 121 (378)
|+.|.|++-.
T Consensus 817 g~ay~vtv~a 826 (1281)
T KOG4222|consen 817 GIAYSVTVAA 826 (1281)
T ss_pred cceEEEEEee
Confidence 9999999854
No 200
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=29.43 E-value=4.6e+02 Score=24.26 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=12.8
Q ss_pred CcchhhHHHHHHHhhcCC
Q 017051 1 MELKFVLTAFVFISATVT 18 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (378)
|+++|++.|++++++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (292)
T PRK13861 1 MIKKLFLTLACLLFAAIG 18 (292)
T ss_pred ChhHHHHHHHHHHHhccc
Confidence 888988888777654443
No 201
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=29.26 E-value=31 Score=26.47 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=14.8
Q ss_pred cchhhHHHHHHHhhcCCCC
Q 017051 2 ELKFVLTAFVFISATVTTA 20 (378)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (378)
+++++++++.++|+.|...
T Consensus 5 mk~~~~l~~~l~LS~~s~~ 23 (104)
T PRK14864 5 MRRFASLLLTLLLSACSAL 23 (104)
T ss_pred HHHHHHHHHHHHHhhhhhc
Confidence 4568888999999999643
No 202
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=28.67 E-value=82 Score=25.80 Aligned_cols=15 Identities=27% Similarity=0.137 Sum_probs=10.1
Q ss_pred hhhHHHHHHHhhcCC
Q 017051 4 KFVLTAFVFISATVT 18 (378)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (378)
.++++++.+++++|.
T Consensus 3 ~~~~l~~~llL~gC~ 17 (146)
T TIGR03352 3 FAVLLAACLLLAGCS 17 (146)
T ss_pred eHHHHHHHHHHhhcc
Confidence 345555666799996
No 203
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.33 E-value=32 Score=26.86 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=8.6
Q ss_pred CcchhhHHHHHHHhhcCC
Q 017051 1 MELKFVLTAFVFISATVT 18 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (378)
|||.|++++++++.+.+.
T Consensus 1 MKk~~ll~~~ll~s~~a~ 18 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAF 18 (114)
T ss_pred CchHHHHHHHHHHHHHHh
Confidence 555555554444444333
No 204
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=26.70 E-value=40 Score=21.67 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=7.7
Q ss_pred CcchhhHHHH--HHHhhcC
Q 017051 1 MELKFVLTAF--VFISATV 17 (378)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~ 17 (378)
|+|.|.|+++ +..||.|
T Consensus 3 lKKsllLlfflG~ISlSlC 21 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSLC 21 (46)
T ss_pred chHHHHHHHHHHHcccchH
Confidence 5666443333 3344444
No 205
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=26.49 E-value=46 Score=21.54 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=3.7
Q ss_pred HhhcCCC
Q 017051 13 ISATVTT 19 (378)
Q Consensus 13 ~~~~~~~ 19 (378)
.+++|..
T Consensus 18 ~l~~CnT 24 (48)
T PRK10081 18 VLTACNT 24 (48)
T ss_pred HHhhhhh
Confidence 3556653
No 206
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=26.35 E-value=84 Score=28.86 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=31.3
Q ss_pred cCCCcEEEeccccccccchhhhHHHHHHhhHhhhh-CCceeecCCCCccC
Q 017051 160 QCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLAS-ARPWMVTQGNHEKE 208 (378)
Q Consensus 160 ~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~-~~P~~~v~GNHD~~ 208 (378)
..++|+|+.+|-++| |+.|...+..-.. -.|++..||--|..
T Consensus 294 ~G~vDaIvLTGGiA~-------~~~f~~~I~~~v~~iapv~v~PGE~Ele 336 (358)
T COG3426 294 KGKVDAIVLTGGIAY-------EKLFVDAIEDRVSWIAPVIVYPGEDELE 336 (358)
T ss_pred CCCCCEEEEecchhh-------HHHHHHHHHHHHhhhcceEecCCchHHH
Confidence 679999999999986 5665554443322 27999999998883
No 207
>PF15621 PROL5-SMR: Proline-rich submaxillary gland androgen-regulated family
Probab=25.57 E-value=45 Score=25.89 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=17.7
Q ss_pred cchhhHHHHHHHhhcCCCCccccCCC
Q 017051 2 ELKFVLTAFVFISATVTTAEYIRPQP 27 (378)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (378)
||.|-|+|=+|+|++|-..+=.+.++
T Consensus 1 MK~L~li~GLw~Li~CF~~~E~~Rgp 26 (113)
T PF15621_consen 1 MKSLYLIFGLWALIGCFTPGESQRGP 26 (113)
T ss_pred CcceehHHHHHHHHHHccccccccCC
Confidence 56788888888888887643334333
No 208
>KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only]
Probab=25.38 E-value=87 Score=30.73 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=29.2
Q ss_pred CcchhhHHHHHHHhhcCCC----Ccccc-----------CC-----CCCCcccCCCCCCCCCCceEEEEe
Q 017051 1 MELKFVLTAFVFISATVTT----AEYIR-----------PQ-----PRRTLEFPWDPKPSSHPQQVHISL 50 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~----~~~~~-----------~~-----~~~~~~~~~~~~~~~~p~~v~l~~ 50 (378)
|.++.|+++|+++++..++ .++.+ +. |..-+.+|-.-+.+|+|.||++-.
T Consensus 1 m~~~~i~l~ll~~~~~~a~~~~~~~~~~~~~~~f~~~~gskt~Y~~p~~~~g~~~~lp~~C~p~qv~~l~ 70 (467)
T KOG1382|consen 1 MFKSGILLILLAAFIVNAGTIPLGDLARLSLFDFTRLLGSKTPYQFPGFYIGPSRDLPEGCEPKQVQLLI 70 (467)
T ss_pred CchhhHHHHHHHHHHhhccccchhhhhhcchhhhhhhcCCCCccccccccCCCCCCCCCCcceeeeeeeh
Confidence 7888777777777766443 11111 11 111223333357889999998764
No 209
>PRK10812 putative DNAse; Provisional
Probab=24.46 E-value=94 Score=28.23 Aligned_cols=136 Identities=13% Similarity=0.043 Sum_probs=71.1
Q ss_pred hHHHHHHhhcCCCcEEEeccccccccchhhhHHHHHHhhHhhhhCCceeecCCCCccCCCCcccchhhhchhcccCCCCC
Q 017051 151 TKSTLDHIGQCKYDVHLLPGDLSYADYMQHRWDTFGELVQPLASARPWMVTQGNHEKESIPLIMDAFQSYNARWKMPFEE 230 (378)
Q Consensus 151 ~~~~~~~i~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~p~~~ 230 (378)
...++++..+.+...++..|--. ..|....+..+.. -.++++.|=|=..... .............+
T Consensus 22 ~~~vl~~a~~~gv~~~~~~~~~~------~~~~~~~~l~~~~---~~v~~~~GiHP~~~~~--~~~~~~l~~~~~~~--- 87 (265)
T PRK10812 22 VDDVLAKAAARDVKFCLAVATTL------PGYRHMRDLVGER---DNVVFSCGVHPLNQDE--PYDVEELRRLAAEE--- 87 (265)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCH------HHHHHHHHHHhhC---CCeEEEEEeCCCCCCC--hhHHHHHHHHhcCC---
Confidence 34677777778888888877543 3455444433322 2377788888653211 11111111111000
Q ss_pred CCCCCCceEEEEeCCEEEEEEcCcCCCCCcHHHHHHHHHHhhhccCCCCCeEEEEeccccccCCCCCCCCchHHHHHHHH
Q 017051 231 SGSNSNLYYSFDVAGAHLIMLGSYADYDEYSDQYRWLKDDLSKVDRKKTPWLLVLLHVPWYNSNEAHQGEGDGMMAIMEP 310 (378)
Q Consensus 231 ~~~~~~~~ysf~~g~v~fi~ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~ 310 (378)
. ..- +-=|+||-.........|.++++.+|+-+.+-+.| |+.|..- ....+.+
T Consensus 88 ------~--vva---IGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~P---v~iH~r~-------------a~~~~l~ 140 (265)
T PRK10812 88 ------G--VVA---MGETGLDYYYTPETKVRQQESFRHHIQIGRELNKP---VIVHTRD-------------ARADTLA 140 (265)
T ss_pred ------C--EEE---EEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCC---eEEEeeC-------------chHHHHH
Confidence 0 011 22245664322234578999999999987654544 6667531 1146667
Q ss_pred HHHhcCCcEEEecCcccc
Q 017051 311 LLYAASVDLVLAGHVHAY 328 (378)
Q Consensus 311 l~~~~~vdlvl~GH~H~y 328 (378)
++++++++. ..|..|.|
T Consensus 141 iL~~~~~~~-~~~v~H~f 157 (265)
T PRK10812 141 ILREEKVTD-CGGVLHCF 157 (265)
T ss_pred HHHhhcCCC-CCEEEEee
Confidence 787765431 12335554
No 210
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=24.45 E-value=85 Score=27.97 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=20.4
Q ss_pred chhhHHHHHHHhhcC-CC-CccccCCCCCCcccCCC
Q 017051 3 LKFVLTAFVFISATV-TT-AEYIRPQPRRTLEFPWD 36 (378)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 36 (378)
+-|++++++++|++| .. ++..+.+++..+.-|..
T Consensus 5 ~~~~~~~~~~~l~gC~~~~~~~g~~p~~s~~~~~~~ 40 (234)
T PRK12788 5 RLLVAILACLALAGCANNLADALQAPRMSPIGQGLR 40 (234)
T ss_pred HHHHHHHHHHHhhcccCcHhHcCCCCCCCCCCCccc
Confidence 446677777778999 42 24555565655544443
No 211
>TIGR02722 lp_ uncharacterized proteobacterial lipoprotein. Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby.
Probab=23.80 E-value=97 Score=26.55 Aligned_cols=16 Identities=0% Similarity=0.177 Sum_probs=11.7
Q ss_pred hhHHHHHHHhhcCCCC
Q 017051 5 FVLTAFVFISATVTTA 20 (378)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (378)
+++++..|+|++|...
T Consensus 6 ~~~~~~al~l~gC~~~ 21 (189)
T TIGR02722 6 IFVALLALLLSGCVSQ 21 (189)
T ss_pred HHHHHHHHHHccCCCC
Confidence 5666777889999643
No 212
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=23.76 E-value=44 Score=29.12 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=12.8
Q ss_pred cchhhHHHHHHHhhcCC
Q 017051 2 ELKFVLTAFVFISATVT 18 (378)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (378)
||+|++++++++|++|+
T Consensus 1 ~k~l~~~~~~~lL~~Cs 17 (204)
T PF11873_consen 1 KKKLLLLLIALLLSGCS 17 (204)
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 46677777777788886
No 213
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=23.25 E-value=55 Score=27.45 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=12.6
Q ss_pred Ccch--hhHHHHHHHhhcCCC
Q 017051 1 MELK--FVLTAFVFISATVTT 19 (378)
Q Consensus 1 ~~~~--~~~~~~~~~~~~~~~ 19 (378)
||+. |++++.+|+|.||+.
T Consensus 1 MK~~~~li~l~~~LlL~GCAg 21 (171)
T PRK13733 1 MKQISLLIPLLGTLLLSGCAG 21 (171)
T ss_pred CchhhHHHHHHHHHHhccccC
Confidence 6663 444555578999984
No 214
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=23.06 E-value=2.8e+02 Score=22.67 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=15.5
Q ss_pred cCCCcEEEecc---ccccccchhhhHHHHHHhhHhhh
Q 017051 160 QCKYDVHLLPG---DLSYADYMQHRWDTFGELVQPLA 193 (378)
Q Consensus 160 ~~~~d~vi~~G---Dl~~~~~~~~~~~~~~~~~~~l~ 193 (378)
..+||.|++.. |+......+..-+.+.++++.+.
T Consensus 48 ~~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~ 84 (171)
T cd04502 48 PYQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIR 84 (171)
T ss_pred cCCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHH
Confidence 45788766543 55432222222233444455443
No 215
>cd02850 Cellulase_N_term Cellulase N-terminus domain. Cellulases are O-glycosyl hydrolases (GHs) that hydrolyze beta 1-4 glucosidic bonds in cellulose. They are usually catagorized into either exoglucanases which sequentially release sugar units from the cellulose chain and endoglucanases which also attack the chain internally. The N-terminus of cellulase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=23.06 E-value=1.2e+02 Score=22.13 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=19.9
Q ss_pred CeEEEEEECCC-CCCCEEEEEeCc
Q 017051 99 GKIHHTVIGPL-EHDTVYFYRCGR 121 (378)
Q Consensus 99 ~~~h~~~l~~L-~p~t~Y~Y~v~~ 121 (378)
..++.+.++.| +|||+|+-+++.
T Consensus 55 ~~~~~~DFS~~~~pG~~Y~l~~~~ 78 (86)
T cd02850 55 DNVHIIDFSSYRTEGTGYYLSVDG 78 (86)
T ss_pred CeEEEEEcCCCcCCCCeEEEEECC
Confidence 47899999999 889999988865
No 216
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=22.81 E-value=3.4e+02 Score=20.53 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCcEEEecCccc
Q 017051 304 MMAIMEPLLYAASVDLVLAGHVHA 327 (378)
Q Consensus 304 ~~~~l~~l~~~~~vdlvl~GH~H~ 327 (378)
..+.+.+..+++++|+++.|+.+.
T Consensus 73 ~~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 73 VAEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCC
Confidence 347888888999999998888764
No 217
>COG5510 Predicted small secreted protein [Function unknown]
Probab=22.70 E-value=54 Score=20.68 Aligned_cols=15 Identities=13% Similarity=0.002 Sum_probs=8.2
Q ss_pred hhHHHHHHHhhcCCC
Q 017051 5 FVLTAFVFISATVTT 19 (378)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (378)
++++|+.++++.|+.
T Consensus 10 ~~vll~s~llaaCNT 24 (44)
T COG5510 10 ALVLLASTLLAACNT 24 (44)
T ss_pred HHHHHHHHHHHHhhh
Confidence 344455556666654
No 218
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=21.87 E-value=76 Score=29.45 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.1
Q ss_pred EEEECCCCCCCEEEEEeCc
Q 017051 103 HTVIGPLEHDTVYFYRCGR 121 (378)
Q Consensus 103 ~~~l~~L~p~t~Y~Y~v~~ 121 (378)
..+|.||+||+.|-+.|..
T Consensus 261 tetI~~L~PG~~Yl~dV~~ 279 (300)
T PF10179_consen 261 TETIKGLKPGTTYLFDVYV 279 (300)
T ss_pred eeecccCCCCcEEEEEEEE
Confidence 3479999999999998864
No 219
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=21.82 E-value=55 Score=21.57 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred CcchhhHHHHHHHhhcCC
Q 017051 1 MELKFVLTAFVFISATVT 18 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (378)
|+.+++|+|+++++-.+.
T Consensus 1 Mk~p~~llllvlllGla~ 18 (56)
T PF08138_consen 1 MKTPIFLLLLVLLLGLAQ 18 (56)
T ss_dssp ------------------
T ss_pred CcchHHHHHHHHHHHHHh
Confidence 777776666666544443
No 220
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=21.65 E-value=1.1e+02 Score=23.27 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=14.1
Q ss_pred CeEEEEEcccCCCCChHHHHHHhhcCCCcE
Q 017051 136 PITFAVAGDLGQTGWTKSTLDHIGQCKYDV 165 (378)
Q Consensus 136 ~~~f~~~gD~~~~~~~~~~~~~i~~~~~d~ 165 (378)
..+|+.+||.+..+ .++..++.+.-|+-
T Consensus 64 ~~kfiLIGDsgq~D--peiY~~ia~~~P~~ 91 (100)
T PF09949_consen 64 ERKFILIGDSGQHD--PEIYAEIARRFPGR 91 (100)
T ss_pred CCcEEEEeeCCCcC--HHHHHHHHHHCCCC
Confidence 35666666665443 34444554444443
No 221
>TIGR03780 Bac_Flav_CT_N Bacteroides conjugative transposon TraN protein. Members of this family are the TraN protein encoded by transfer region genes of conjugative transposons of Bacteroides. The family is related to conjugative transfer proteins VirB9 and TrbG of Agrobacterium Ti plasmids.
Probab=21.44 E-value=6.2e+02 Score=23.37 Aligned_cols=9 Identities=11% Similarity=0.453 Sum_probs=6.1
Q ss_pred CCEEEEEeC
Q 017051 112 DTVYFYRCG 120 (378)
Q Consensus 112 ~t~Y~Y~v~ 120 (378)
|+.|.|.+.
T Consensus 100 gr~Y~F~l~ 108 (285)
T TIGR03780 100 GRFYVFNLN 108 (285)
T ss_pred CcEEEEEEE
Confidence 477777763
No 222
>PF10333 Pga1: GPI-Mannosyltransferase II co-activator; InterPro: IPR019433 Pga1 is found only in yeasts and not in mammals. It localises in the ER as a glycosylated integral membrane protein. It binds to the GPI-mannosyltransferase II subunit of the GPI and it is responsible for the second mannose addition to GPI precursors. The GPI-anchoring complex is a glycolipid that functions as a membrane anchor for many cell-surface proteins [].
Probab=20.82 E-value=1.1e+02 Score=25.98 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=20.2
Q ss_pred ccCeEEEEEECCCCCCCEEEEEeC
Q 017051 97 RSGKIHHTVIGPLEHDTVYFYRCG 120 (378)
Q Consensus 97 ~~~~~h~~~l~~L~p~t~Y~Y~v~ 120 (378)
..+....++|++|++|.+|+-|++
T Consensus 61 ~~~~t~~V~L~nl~~~e~y~vKiC 84 (180)
T PF10333_consen 61 QPGSTTYVELNNLQPGETYQVKIC 84 (180)
T ss_pred CCCceEEEEeccCCCCCeEEEEEE
Confidence 345677789999999999999986
No 223
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=20.80 E-value=2.2e+02 Score=25.33 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=16.5
Q ss_pred CcchhhHHHHHHHhhcCCCCccc
Q 017051 1 MELKFVLTAFVFISATVTTAEYI 23 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (378)
|.|.+..+|++++++.++.|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~a~A~v~ 25 (229)
T PRK15211 3 MMKWGLVSLLSLAVCGQAMAAFV 25 (229)
T ss_pred eeehHHHHHHHHHHhHHheEEEE
Confidence 67778888887777777656553
No 224
>PRK10626 hypothetical protein; Provisional
Probab=20.23 E-value=1.4e+02 Score=26.73 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=13.9
Q ss_pred CcchhhHHHHHHHhhcCCCC
Q 017051 1 MELKFVLTAFVFISATVTTA 20 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (378)
|++|.++++++++++..+.|
T Consensus 1 ~mrk~~l~~~L~l~s~~a~A 20 (239)
T PRK10626 1 MMRKMLLAALLSLTAMQAQA 20 (239)
T ss_pred ChHHHHHHHHHHHHHHHHHh
Confidence 78888777777666666544
No 225
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=20.07 E-value=3.6e+02 Score=24.29 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=12.3
Q ss_pred hhhHHHHHHHhhcCCCCccc
Q 017051 4 KFVLTAFVFISATVTTAEYI 23 (378)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (378)
+|++||+..+.+.++.+++.
T Consensus 12 ~~~~~~~~~~~~~~a~A~l~ 31 (253)
T PRK15249 12 YLIVFLFLALPATASWASVT 31 (253)
T ss_pred HHHHHHHHHhhhHhheeEEE
Confidence 46677666666665556553
Done!