BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017053
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3
Length = 497
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 10/197 (5%)
Query: 64 RYLEASQIRERAIERITNVIGTYNDLRLRIFSKYP--DLFP-EEVFNMETFKWSFGILFS 120
RYL+++Q + N Y ++ +P + P ++ F E ++W+ + +
Sbjct: 194 RYLQSTQAIHDVFSQYKNTARQYAYF-YKVIQTHPHANKLPLKDSFTYEDYRWAVSSVXT 252
Query: 121 RLVRLPSMDGR---VALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFIS 177
R ++P+ DG +AL+P D NH+ + T Y+ + ++ GEQ++I
Sbjct: 253 RQNQIPTEDGSRVTLALIPLWDXCNHTNGLIT-TGYNLEDDRCECVALQDFRAGEQIYIF 311
Query: 178 YGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPI 237
YG +SN E ++ GF N D V++ L + KSD+ Y K E L + G+ S F +
Sbjct: 312 YGTRSNAEFVIHSGFFF--DNNSHDRVKIKLGVSKSDRLYAXKAEVLARAGIPTSSVFAL 369
Query: 238 QITGWPLELMAYAYLVV 254
T P+ A+L V
Sbjct: 370 HFTEPPISAQLLAFLRV 386
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 19/209 (9%)
Query: 41 KGLLSVLPPTASLCHFRTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDL 100
K +LP + + EL L+ SQ+ + + V L I L
Sbjct: 100 KHYFGILPQETDSTIYWSEEELQE-LQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRL 158
Query: 101 FPEEVFNMETFKWSFGILFSR-LVRLPSMDGRVALVPWADMLNHSCEVETF-LDYDKSSQ 158
FP+ V ++ F W+FGIL SR RL + + + +VP AD++NHS V T Y+
Sbjct: 159 FPDPV-TLDDFFWAFGILRSRAFSRLRNEN--LVVVPMADLINHSAGVTTEDHAYEVKGA 215
Query: 159 GVVFTTDRQY--------QPGEQVFISYG-KKSNGELLLSYGFV-PREGTNPSDSVELPL 208
+F+ D + + GEQV+I Y KSN EL L YGF+ P E + + L L
Sbjct: 216 AGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH---AYTLTL 272
Query: 209 SLKKSDKCYKEKLEALRKYGLSASECFPI 237
+ +SD + +KL+ G + + F I
Sbjct: 273 EISESDPFFDDKLDVAESNGFAQTAYFDI 301
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 19/209 (9%)
Query: 41 KGLLSVLPPTASLCHFRTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDL 100
K +LP + + EL L+ SQ+ + + V L I L
Sbjct: 96 KHYFGILPQETDSTIYWSEEELQE-LQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRL 154
Query: 101 FPEEVFNMETFKWSFGILFSR-LVRLPSMDGRVALVPWADMLNHSCEVETF-LDYDKSSQ 158
FP+ V ++ F W+FGIL SR RL + + + +VP AD++NHS V T Y+
Sbjct: 155 FPDPV-TLDDFFWAFGILRSRAFSRLRNEN--LVVVPMADLINHSAGVTTEDHAYEVKGA 211
Query: 159 GVVFTTDRQY--------QPGEQVFISYG-KKSNGELLLSYGFV-PREGTNPSDSVELPL 208
+F+ D + + GEQV+I Y KSN EL L YGF+ P E + + L L
Sbjct: 212 AGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH---AYTLTL 268
Query: 209 SLKKSDKCYKEKLEALRKYGLSASECFPI 237
+ +SD + +KL+ G + + F I
Sbjct: 269 EISESDPFFDDKLDVAESNGFAQTAYFDI 297
>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310
pdb|3QXY|B Chain B, Human Setd6 In Complex With Rela Lys310
pdb|3RC0|A Chain A, Human Setd6 In Complex With Rela Lys310 Peptide
pdb|3RC0|B Chain B, Human Setd6 In Complex With Rela Lys310 Peptide
Length = 449
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 66 LEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFK--------WSFGI 117
L+ + + E + + N+ Y + L +PDLF V ++E + +SF
Sbjct: 144 LQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFSLRVRSLELYHQLVALVMAYSFQE 203
Query: 118 LFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQP---GEQV 174
+ V +VP AD+LNH L+Y + +V T QP G ++
Sbjct: 204 PLEEEEDEKEPNSPV-MVPAADILNHLANHNANLEYSANCLRMVAT-----QPIPKGHEI 257
Query: 175 FISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALR 225
F +YG+ +N +L+ YGFV N D+ ++ + + K EA R
Sbjct: 258 FNTYGQMANWQLIHMYGFVEPYPDNTDDTADIQMVTVREAALQGTKTEAER 308
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 133 ALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISY 178
A+ P ++NHSC + Y + V ++ +PGE+VF SY
Sbjct: 197 AIFPDVALMNHSCCPNVIVTYKGTLAEVRAV--QEIKPGEEVFTSY 240
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 133 ALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISY 178
A+ P ++NHSC + Y + V ++ +PGE+VF SY
Sbjct: 197 AIFPDVALMNHSCCPNVIVTYKGTLAEVRAV--QEIKPGEEVFTSY 240
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 133 ALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISY 178
A+ P ++NHSC + Y + V ++ +PGE+VF SY
Sbjct: 197 AIFPDVALMNHSCCPNVIVTYKGTLAEVRAV--QEIKPGEEVFTSY 240
>pdb|2BBD|A Chain A, Crystal Structure Of The Stiv Mcp
pdb|2BBD|B Chain B, Crystal Structure Of The Stiv Mcp
pdb|2BBD|C Chain C, Crystal Structure Of The Stiv Mcp
pdb|2BBD|D Chain D, Crystal Structure Of The Stiv Mcp
Length = 350
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 171 GEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCY 217
G I + K NG+L L++ PSDS+E L+L+ D Y
Sbjct: 268 GASAIIDFRKYFNGDLDLTHA--------PSDSIEYDLALQNQDNVY 306
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 18/82 (21%)
Query: 98 PDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETF------L 151
P+ F E +F +T WSFG+L + L +P+ N EV F +
Sbjct: 232 PEAFMEGIFTSKTDTWSFGVLLWEIFSL-------GYMPYPSKSNQ--EVLEFVTSGGRM 282
Query: 152 DYDKSSQGVVF---TTDRQYQP 170
D K+ G V+ T Q+QP
Sbjct: 283 DPPKNCPGPVYRIMTQCWQHQP 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,013,621
Number of Sequences: 62578
Number of extensions: 388645
Number of successful extensions: 972
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 947
Number of HSP's gapped (non-prelim): 22
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)