Query 017053
Match_columns 378
No_of_seqs 227 out of 1272
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 8.6E-35 1.9E-39 295.2 24.3 327 25-363 112-457 (472)
2 KOG1338 Uncharacterized conser 99.9 3.4E-25 7.3E-30 209.3 17.7 195 23-224 89-309 (466)
3 PF09273 Rubis-subs-bind: Rubi 99.8 1.1E-19 2.4E-24 152.4 8.9 127 210-345 1-128 (128)
4 PF00856 SET: SET domain; Int 99.3 1.6E-11 3.5E-16 105.1 8.0 49 131-179 112-162 (162)
5 smart00317 SET SET (Su(var)3-9 98.4 2.1E-07 4.6E-12 75.5 3.8 46 133-178 69-116 (116)
6 KOG2589 Histone tail methylase 95.9 0.0089 1.9E-07 57.5 4.0 45 133-180 193-238 (453)
7 KOG1085 Predicted methyltransf 94.2 0.043 9.2E-07 51.3 3.3 49 138-187 334-385 (392)
8 KOG4442 Clathrin coat binding 93.4 0.069 1.5E-06 55.6 3.6 43 137-179 193-237 (729)
9 KOG1079 Transcriptional repres 92.0 0.14 3E-06 53.2 3.5 43 137-179 665-709 (739)
10 KOG1080 Histone H3 (Lys4) meth 90.0 0.26 5.6E-06 54.4 3.4 69 111-179 911-983 (1005)
11 COG2940 Proteins containing SE 89.3 0.21 4.6E-06 51.3 2.1 44 137-180 405-450 (480)
12 KOG1082 Histone H3 (Lys9) meth 74.4 2.2 4.7E-05 42.3 2.4 45 137-181 272-322 (364)
13 KOG1083 Putative transcription 70.7 4 8.6E-05 45.0 3.4 45 138-182 1251-1297(1306)
14 COG1188 Ribosome-associated he 65.4 4.9 0.00011 32.0 2.1 55 104-180 7-61 (100)
15 KOG2084 Predicted histone tail 61.6 11 0.00025 37.9 4.6 60 131-192 199-265 (482)
16 KOG1338 Uncharacterized conser 57.5 20 0.00042 35.7 5.1 73 131-206 269-343 (466)
17 KOG1141 Predicted histone meth 54.6 7.2 0.00016 42.0 1.8 55 137-191 1189-1253(1262)
18 KOG2461 Transcription factor B 45.9 18 0.0004 36.2 3.0 35 157-191 121-155 (396)
19 TIGR02059 swm_rep_I cyanobacte 26.0 1.1E+02 0.0024 24.4 3.8 29 154-182 71-99 (101)
20 PF11132 SplA: Transcriptional 20.8 69 0.0015 23.9 1.7 14 166-179 4-17 (75)
21 PF05364 SecIII_SopE_N: Salmon 20.8 1.1E+02 0.0024 22.4 2.6 37 338-374 23-59 (74)
22 KOG0884 Similar to cyclophilin 20.7 88 0.0019 25.9 2.4 27 157-183 84-110 (161)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=100.00 E-value=8.6e-35 Score=295.17 Aligned_cols=327 Identities=31% Similarity=0.434 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHhh---cchHHHhhcCCCCCCCCCCCCHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 017053 25 ILVRMCLLRSLFL---YHRKGLLSVLPPTASLCHFRTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLF 101 (378)
Q Consensus 25 ~~l~~~Ll~e~~~---s~w~pYl~~LP~~~~~pl~w~~~el~~~L~gs~l~~~~~~~~~~~~~~~~~~~~~l~~~~p~~f 101 (378)
+.++.+|+++... +.|.||+..||..+++|++|...++. .|.++.....+..+++.++..+..+.+ +...+|..+
T Consensus 112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 189 (472)
T KOG1337|consen 112 IALALFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVK-SLLSTPLFEIVASRRQNLVNKSAELLE-VLQSHPSLF 189 (472)
T ss_pred HHHHHHHHHhhhccccccchhhhhhchhhcCCccccCHHHHH-HhhcchhhHHHHHHHHHhhhhHHHHHH-HHHhccccc
Confidence 7899999999876 68999999999999999999999998 599999998888888777776666554 334455544
Q ss_pred C---cccccHHHHHHHHHhhhccceeccCC--------CCceeeeecccccCCCCCCcccEEeeCCCCeEEEEecCcCCC
Q 017053 102 P---EEVFNMETFKWSFGILFSRLVRLPSM--------DGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQP 170 (378)
Q Consensus 102 ~---~~~~t~e~f~wA~~~v~SRaf~~~~~--------~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~a~~~i~~ 170 (378)
+ .+.++++.|.||+++|.||+|+.+.. .+..+|+|++||+||++.. ..+.|+..++.+.+++.++|++
T Consensus 190 ~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~~~l~~~~~v~~ 268 (472)
T KOG1337|consen 190 GSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEAVELVAERDVSA 268 (472)
T ss_pred cccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCcEEEEEeeeecC
Confidence 3 23489999999999999999987644 2367999999999999998 4557777777999999999999
Q ss_pred CceeEecCCCCChHHHHHhCCCccCCCCCCCCceeeccccCCCchhHHHHHHHHHHCCCCCCceeeeecCCCC-HHHHHH
Q 017053 171 GEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWP-LELMAY 249 (378)
Q Consensus 171 Geei~i~YG~~~n~~lL~~YGFv~~~~~Np~D~v~l~~~l~~~d~~~~~k~~~L~~~gl~~~~~f~l~~~~~p-~~Ll~~ 249 (378)
|+||||+||+++|++||.+||||.+ +||+|.|.+.+.++..++....+...+..+++.....|.+...+.| .+++..
T Consensus 269 geevfi~YG~~~N~eLL~~YGFv~~--~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (472)
T KOG1337|consen 269 GEEVFINYGPKSNAELLLHYGFVEE--DNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPVSEMLLL 346 (472)
T ss_pred CCeEEEecCCCchHHHHHhcCCCCC--CCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCchhhhhhh
Confidence 9999999999999999999999988 9999999999999999999989999999999998888888877765 333444
Q ss_pred HHHHcCCchhh--hhHHHHH-HHHhcccCCCCCCCCchHHHHHHHHHHHH-HHHHHhhccchhhhcCCCCCCCCCccchh
Q 017053 250 AYLVVSPPSMK--GKFEEMA-AAASNKMTSKKDIKCPEIDEQALQFILDS-CESSISKYSRFLQASGSMDLDTTSPKQLN 325 (378)
Q Consensus 250 lRv~~~~~~e~--~~~~~l~-~~~~~~~~~~~~~~s~~nE~~~~~~L~~~-~~~~L~~y~tt~eeD~~~l~~~~~~~~~~ 325 (378)
.++..+..+.. +.+.... ..............+..+|...+..+.+. |...+..+.++++++...+.+. .++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~----~l~ 422 (472)
T KOG1337|consen 347 FLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDN----ILS 422 (472)
T ss_pred hhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhccc----ccc
Confidence 44343333322 1111110 00111112234455578999999999999 8889999999998777766541 122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Q 017053 326 RRVFLKQLAVDLCTSERRILFRAQYILRRRLRDIRSGE 363 (378)
Q Consensus 326 ~~~~~~~~A~~~R~~EK~IL~~~~~~l~~~l~~l~~~~ 363 (378)
. +..++..++..+|+||.+++..+..+...+++..
T Consensus 423 ~---~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l~s~~ 457 (472)
T KOG1337|consen 423 K---LLELLEKLRTLEKRILEKSLKLLRSRLKLLHSLE 457 (472)
T ss_pred h---hhhhhhhhhhhHHHHHHHHHHHHHHhhhhccccc
Confidence 2 3678999999999999999999998888888766
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=3.4e-25 Score=209.33 Aligned_cols=195 Identities=19% Similarity=0.237 Sum_probs=159.7
Q ss_pred hHHHHHHHHHHHHhh---cchHHHhhcCCCC--CCCCCCCCHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 017053 23 SSILVRMCLLRSLFL---YHRKGLLSVLPPT--ASLCHFRTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKY 97 (378)
Q Consensus 23 ~~~~l~~~Ll~e~~~---s~w~pYl~~LP~~--~~~pl~w~~~el~~~L~gs~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (378)
||.+|+++|++|+.- |+|.||++.+|+. .++|+||+++|+..+++|+ +.+...+..++++..|..++.++.+.+
T Consensus 89 sw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~st-vlee~~Kd~aeI~~~~i~~i~pf~~~~ 167 (466)
T KOG1338|consen 89 SWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCST-VLEETVKDKAEIEKDFIFVIQPFKQHC 167 (466)
T ss_pred cHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcc-cchhhHhHHHHHHHHHHHHHHHHHHhC
Confidence 799999999999753 8999999999984 6899999999999766665 555588889999999999999999999
Q ss_pred CCCCCcccccHHHHHHHHHhhhccceeccCCC-------------CceeeeecccccCCCCC-CcccEEeeCCCCeEEEE
Q 017053 98 PDLFPEEVFNMETFKWSFGILFSRLVRLPSMD-------------GRVALVPWADMLNHSCE-VETFLDYDKSSQGVVFT 163 (378)
Q Consensus 98 p~~f~~~~~t~e~f~wA~~~v~SRaf~~~~~~-------------~~~~LvP~~Dm~NH~~~-~~~~~~~~~~~~~~~~~ 163 (378)
|.+|.. +++|+|..+++++.+.+|.++... ...+|+|.+||+||+.. .|+...| +++|+.|+
T Consensus 168 p~vfs~--~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y--~~NcL~mv 243 (466)
T KOG1338|consen 168 PIVFSR--PSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRY--EDNCLEMV 243 (466)
T ss_pred cchhcc--cCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceec--cCcceeee
Confidence 999864 899999999999999999886320 13699999999999987 7787777 57999999
Q ss_pred ecCcCCCCceeEecCCCCChHHHHHhCCCccCCCCC-------CCCceeeccccCCCchhHHHHHHHH
Q 017053 164 TDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTN-------PSDSVELPLSLKKSDKCYKEKLEAL 224 (378)
Q Consensus 164 a~~~i~~Geei~i~YG~~~n~~lL~~YGFv~~~~~N-------p~D~v~l~~~l~~~d~~~~~k~~~L 224 (378)
|+++|.+|+||+++||.++|+ |++||.+.-++.. -+|.+.+-.+.+.+++.+..|..++
T Consensus 244 a~r~iekgdev~n~dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ 309 (466)
T KOG1338|consen 244 ADRNIEKGDEVDNSDGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILL 309 (466)
T ss_pred ecCCCCCccccccccccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHH
Confidence 999999999999999999998 7788776542211 1233444556666677666665533
No 3
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.80 E-value=1.1e-19 Score=152.41 Aligned_cols=127 Identities=26% Similarity=0.427 Sum_probs=101.5
Q ss_pred cCCCchhHHHHHHHHHHCCCCCCceeeeecCCC-CHHHHHHHHHHcCCchhhhhHHHHHHHHhcccCCCCCCCCchHHHH
Q 017053 210 LKKSDKCYKEKLEALRKYGLSASECFPIQITGW-PLELMAYAYLVVSPPSMKGKFEEMAAAASNKMTSKKDIKCPEIDEQ 288 (378)
Q Consensus 210 l~~~d~~~~~k~~~L~~~gl~~~~~f~l~~~~~-p~~Ll~~lRv~~~~~~e~~~~~~l~~~~~~~~~~~~~~~s~~nE~~ 288 (378)
++++||+++.|.++|+.+|+....+|.+..++. |++|++++||++++++++..+........ ......++|..||.+
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~~~~~Ll~~lRv~~~~~~e~~~~~~~~~~~~--~~~~~~~ls~~nE~~ 78 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGPLPPELLAALRVLLMTEEELRALKSLADSSE--WSDRSEPLSPENEIA 78 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSSSHHHHHHHHHHHHSCHHHHHHHHHCGTTTH--CCHCCC-SBHHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCCCCHHHHHHHHHHHcChHHHHHHHHhhcccc--cccccCCCchhhHHH
Confidence 357899999999999999999877899999886 99999999999999999876654321111 012346778999999
Q ss_pred HHHHHHHHHHHHHhhccchhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 017053 289 ALQFILDSCESSISKYSRFLQASGSMDLDTTSPKQLNRRVFLKQLAVDLCTSERRIL 345 (378)
Q Consensus 289 ~~~~L~~~~~~~L~~y~tt~eeD~~~l~~~~~~~~~~~~~~~~~~A~~~R~~EK~IL 345 (378)
++++|...|..+|+.|+||+|+|++.+.+... +. ++++|++||++||+||
T Consensus 79 ~l~~L~~~~~~~L~~y~TtleeD~~~L~~~~~----~~---~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 79 ALQFLIDLCEARLSAYPTTLEEDEELLQSNDL----SS---RRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHHHHHHHHHHHTTSSS-HHHHHHHCHTCCC----HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHhcCCC----cH---HHHHHHHHHHHhHhcC
Confidence 99999999999999999999999998876322 22 3899999999999998
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.25 E-value=1.6e-11 Score=105.08 Aligned_cols=49 Identities=43% Similarity=0.802 Sum_probs=44.0
Q ss_pred ceeeeecccccCCCCCCcccEEee--CCCCeEEEEecCcCCCCceeEecCC
Q 017053 131 RVALVPWADMLNHSCEVETFLDYD--KSSQGVVFTTDRQYQPGEQVFISYG 179 (378)
Q Consensus 131 ~~~LvP~~Dm~NH~~~~~~~~~~~--~~~~~~~~~a~~~i~~Geei~i~YG 179 (378)
..+|+|++||+||++.+|+.+.++ ..+++++++|.++|++||||||+||
T Consensus 112 ~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 112 GIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 589999999999999999988876 5789999999999999999999999
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.41 E-value=2.1e-07 Score=75.50 Aligned_cols=46 Identities=30% Similarity=0.440 Sum_probs=40.3
Q ss_pred eeeecccccCCCCCCcccEEeeCCCC--eEEEEecCcCCCCceeEecC
Q 017053 133 ALVPWADMLNHSCEVETFLDYDKSSQ--GVVFTTDRQYQPGEQVFISY 178 (378)
Q Consensus 133 ~LvP~~Dm~NH~~~~~~~~~~~~~~~--~~~~~a~~~i~~Geei~i~Y 178 (378)
.+.|+++++||++.+|+.+.+...++ .+.++|.|+|++||||+++|
T Consensus 69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 48999999999999999877654444 59999999999999999998
No 6
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=95.86 E-value=0.0089 Score=57.54 Aligned_cols=45 Identities=27% Similarity=0.494 Sum_probs=36.7
Q ss_pred eeeecccccCCCCCCcccEEeeCCC-CeEEEEecCcCCCCceeEecCCC
Q 017053 133 ALVPWADMLNHSCEVETFLDYDKSS-QGVVFTTDRQYQPGEQVFISYGK 180 (378)
Q Consensus 133 ~LvP~~Dm~NH~~~~~~~~~~~~~~-~~~~~~a~~~i~~Geei~i~YG~ 180 (378)
-|=| +-++||++.+||. |.+.+ +...+++.|||++||||...||.
T Consensus 193 wLGP-aafINHDCrpnCk--Fvs~g~~tacvkvlRDIePGeEITcFYgs 238 (453)
T KOG2589|consen 193 WLGP-AAFINHDCRPNCK--FVSTGRDTACVKVLRDIEPGEEITCFYGS 238 (453)
T ss_pred eecc-HHhhcCCCCCCce--eecCCCceeeeehhhcCCCCceeEEeecc
Confidence 3444 4579999999994 54444 78889999999999999999996
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=94.19 E-value=0.043 Score=51.32 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=38.3
Q ss_pred ccccCCCCCCcccE---EeeCCCCeEEEEecCcCCCCceeEecCCCCChHHHH
Q 017053 138 ADMLNHSCEVETFL---DYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELL 187 (378)
Q Consensus 138 ~Dm~NH~~~~~~~~---~~~~~~~~~~~~a~~~i~~Geei~i~YG~~~n~~lL 187 (378)
.-++||+.-.|+.. ..| ..-.+++.|.++|.+|||+...||++|-.-++
T Consensus 334 GRLINHS~~gNl~TKvv~Id-g~pHLiLvA~rdIa~GEELlYDYGDRSkesi~ 385 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEID-GSPHLILVARRDIAQGEELLYDYGDRSKESIA 385 (392)
T ss_pred hhhhcccccCcceeeEEEec-CCceEEEEeccccccchhhhhhccccchhHHh
Confidence 45789998777643 233 34568899999999999999999999876654
No 8
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=0.069 Score=55.64 Aligned_cols=43 Identities=23% Similarity=0.488 Sum_probs=33.7
Q ss_pred cccccCCCCCCcccEE-ee-CCCCeEEEEecCcCCCCceeEecCC
Q 017053 137 WADMLNHSCEVETFLD-YD-KSSQGVVFTTDRQYQPGEQVFISYG 179 (378)
Q Consensus 137 ~~Dm~NH~~~~~~~~~-~~-~~~~~~~~~a~~~i~~Geei~i~YG 179 (378)
++=++|||++|||.+. |. ++...+-+.+.+.|++||||+.+|+
T Consensus 193 laRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYq 237 (729)
T KOG4442|consen 193 LARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQ 237 (729)
T ss_pred HHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecc
Confidence 4668999999999642 33 1234566789999999999999997
No 9
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=91.99 E-value=0.14 Score=53.16 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=35.1
Q ss_pred cccccCCCCCCcccEEe--eCCCCeEEEEecCcCCCCceeEecCC
Q 017053 137 WADMLNHSCEVETFLDY--DKSSQGVVFTTDRQYQPGEQVFISYG 179 (378)
Q Consensus 137 ~~Dm~NH~~~~~~~~~~--~~~~~~~~~~a~~~i~~Geei~i~YG 179 (378)
.+-++||+.++|++... -.....+-+.|.|.|.+|||+|..|+
T Consensus 665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeec
Confidence 45689999999986432 34566788999999999999999997
No 10
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=89.97 E-value=0.26 Score=54.41 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=44.4
Q ss_pred HHHHHHhhhccceeccCCC--CceeeeecccccCCCCCCcccEEee--CCCCeEEEEecCcCCCCceeEecCC
Q 017053 111 FKWSFGILFSRLVRLPSMD--GRVALVPWADMLNHSCEVETFLDYD--KSSQGVVFTTDRQYQPGEQVFISYG 179 (378)
Q Consensus 111 f~wA~~~v~SRaf~~~~~~--~~~~LvP~~Dm~NH~~~~~~~~~~~--~~~~~~~~~a~~~i~~Geei~i~YG 179 (378)
..-...+-.|..|.+...- +..-.-=++-++||++.|||+...= .....++++|.|+|.+||||+-+|-
T Consensus 911 ~Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 911 RYERMGIGDSYLFRIDDEVVVDATKKGNIARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred HHhccCcccceeeecccceEEeccccCchhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 3334445556666654210 0011112577899999999964431 1345788999999999999998885
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=89.28 E-value=0.21 Score=51.28 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=35.0
Q ss_pred cccccCCCCCCcccEEeeCCCC--eEEEEecCcCCCCceeEecCCC
Q 017053 137 WADMLNHSCEVETFLDYDKSSQ--GVVFTTDRQYQPGEQVFISYGK 180 (378)
Q Consensus 137 ~~Dm~NH~~~~~~~~~~~~~~~--~~~~~a~~~i~~Geei~i~YG~ 180 (378)
..=++||++.+|+........+ .+...+.++|++||||+++||.
T Consensus 405 ~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 405 VARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred ccceeecCCCCCcceecccccccceeeecccccchhhhhhcccccc
Confidence 4448999999998765543433 5667899999999999999986
No 12
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=74.36 E-value=2.2 Score=42.28 Aligned_cols=45 Identities=31% Similarity=0.505 Sum_probs=33.2
Q ss_pred cccccCCCCCCcccEEe---e---CCCCeEEEEecCcCCCCceeEecCCCC
Q 017053 137 WADMLNHSCEVETFLDY---D---KSSQGVVFTTDRQYQPGEQVFISYGKK 181 (378)
Q Consensus 137 ~~Dm~NH~~~~~~~~~~---~---~~~~~~~~~a~~~i~~Geei~i~YG~~ 181 (378)
++=++||++.+|..+.. + ..--.+.+.|.++|.+|+|++..||..
T Consensus 272 v~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~ 322 (364)
T KOG1082|consen 272 VARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKA 322 (364)
T ss_pred ccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccc
Confidence 45689999999875432 2 011134678999999999999999964
No 13
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=70.72 E-value=4 Score=44.97 Aligned_cols=45 Identities=27% Similarity=0.423 Sum_probs=32.7
Q ss_pred ccccCCCCCCcccE-EeeCCCC-eEEEEecCcCCCCceeEecCCCCC
Q 017053 138 ADMLNHSCEVETFL-DYDKSSQ-GVVFTTDRQYQPGEQVFISYGKKS 182 (378)
Q Consensus 138 ~Dm~NH~~~~~~~~-~~~~~~~-~~~~~a~~~i~~Geei~i~YG~~~ 182 (378)
+-+.||++.+||.. .|...+. .+.+.|.++|.+||||+..|..++
T Consensus 1251 ~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred ccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccccc
Confidence 45678999888843 3432222 456789999999999999997643
No 14
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=65.37 E-value=4.9 Score=31.95 Aligned_cols=55 Identities=13% Similarity=0.349 Sum_probs=39.0
Q ss_pred ccccHHHHHHHHHhhhccceeccCCCCceeeeecccccCCCCCCcccEEeeCCCCeEEEEecCcCCCCceeEecCCC
Q 017053 104 EVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGK 180 (378)
Q Consensus 104 ~~~t~e~f~wA~~~v~SRaf~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~i~YG~ 180 (378)
...-++.|+|+.-++-+|+.--. |++ ...+.+| +-...+.+.++.|+.|.|.||.
T Consensus 7 ~~mRLDKwL~~aR~~KrRslAk~-------------~~~-----~GrV~vN----G~~aKpS~~VK~GD~l~i~~~~ 61 (100)
T COG1188 7 DRMRLDKWLWAARFIKRRSLAKE-------------MIE-----GGRVKVN----GQRAKPSKEVKVGDILTIRFGN 61 (100)
T ss_pred cceehHHHHHHHHHhhhHHHHHH-------------HHH-----CCeEEEC----CEEcccccccCCCCEEEEEeCC
Confidence 35678999999999999998421 111 1123442 2334788899999999999986
No 15
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=61.60 E-value=11 Score=37.88 Aligned_cols=60 Identities=28% Similarity=0.416 Sum_probs=45.4
Q ss_pred ceeeeecccccCCCCCCcccEEeeCCCCeEEEEecCcCCCCc-eeEecCCCC--C----hHHHHHhCCC
Q 017053 131 RVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGE-QVFISYGKK--S----NGELLLSYGF 192 (378)
Q Consensus 131 ~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~a~~~i~~Ge-ei~i~YG~~--~----n~~lL~~YGF 192 (378)
..++.|..-++||+..+|+.+.++ +....+.+...+.+++ +++++|-.. + ...|-..|.|
T Consensus 199 ~~~l~~~~~~~~hsC~pn~~~~~~--~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f 265 (482)
T KOG2084|consen 199 GRGLFPGSSLFNHSCFPNISVIFD--GRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLF 265 (482)
T ss_pred eeeecccchhcccCCCCCeEEEEC--CceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccce
Confidence 468999999999999999987774 5666677777777776 999999962 2 3455556566
No 16
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.47 E-value=20 Score=35.65 Aligned_cols=73 Identities=14% Similarity=0.026 Sum_probs=54.4
Q ss_pred ceeeeecccccCCCCCC-cc-cEEeeCCCCeEEEEecCcCCCCceeEecCCCCChHHHHHhCCCccCCCCCCCCceee
Q 017053 131 RVALVPWADMLNHSCEV-ET-FLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVEL 206 (378)
Q Consensus 131 ~~~LvP~~Dm~NH~~~~-~~-~~~~~~~~~~~~~~a~~~i~~Geei~i~YG~~~n~~lL~~YGFv~~~~~Np~D~v~l 206 (378)
..+++|+.+|+|-.-.- |. ..-+| ..+...+++.|.+ |.|.-++||...+.++..+|||....+--|++.+-+
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D-~~~d~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p~~g~lv 343 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMD-VPNDDTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKPAIGKLV 343 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhc-CCCcchHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccccceeee
Confidence 46899999999977542 21 12344 4567778888888 999999999999999999999443324567776665
No 17
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=54.65 E-value=7.2 Score=41.98 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=37.1
Q ss_pred cccccCCCCCCcccE---EeeCCCCeE---EEEecCcCCCCceeEecCCC----CChHHHHHhCC
Q 017053 137 WADMLNHSCEVETFL---DYDKSSQGV---VFTTDRQYQPGEQVFISYGK----KSNGELLLSYG 191 (378)
Q Consensus 137 ~~Dm~NH~~~~~~~~---~~~~~~~~~---~~~a~~~i~~Geei~i~YG~----~~n~~lL~~YG 191 (378)
+.-++||++.||..+ -+|..+-.| -+.+.+-|++|.|++-.||= ...-+|+...|
T Consensus 1189 lGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CG 1253 (1262)
T KOG1141|consen 1189 LGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCG 1253 (1262)
T ss_pred hhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecC
Confidence 456899999998754 344333333 45678899999999999983 23444544444
No 18
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=45.87 E-value=18 Score=36.17 Aligned_cols=35 Identities=26% Similarity=0.539 Sum_probs=30.7
Q ss_pred CCeEEEEecCcCCCCceeEecCCCCChHHHHHhCC
Q 017053 157 SQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYG 191 (378)
Q Consensus 157 ~~~~~~~a~~~i~~Geei~i~YG~~~n~~lL~~YG 191 (378)
++.+-.++.++|++|+|+.+.||.--+.+|...+|
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred cCceEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 46778899999999999999999987888877777
No 19
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=25.98 E-value=1.1e+02 Score=24.38 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=23.5
Q ss_pred eCCCCeEEEEecCcCCCCceeEecCCCCC
Q 017053 154 DKSSQGVVFTTDRQYQPGEQVFISYGKKS 182 (378)
Q Consensus 154 ~~~~~~~~~~a~~~i~~Geei~i~YG~~~ 182 (378)
+.....+.+...+.|..|++|.++|-+-+
T Consensus 71 ~~s~ktVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 71 GGSNTTITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred cCcccEEEEEecccccCCCEEEEEeeCCC
Confidence 33445888999999999999999997543
No 20
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=20.77 E-value=69 Score=23.92 Aligned_cols=14 Identities=29% Similarity=0.852 Sum_probs=12.1
Q ss_pred CcCCCCceeEecCC
Q 017053 166 RQYQPGEQVFISYG 179 (378)
Q Consensus 166 ~~i~~Geei~i~YG 179 (378)
+.+++|++||+-|-
T Consensus 4 ~~~~~GD~VyViYr 17 (75)
T PF11132_consen 4 KPYHAGDIVYVIYR 17 (75)
T ss_pred cccCCCCEEEEEEc
Confidence 56899999999993
No 21
>PF05364 SecIII_SopE_N: Salmonella type III secretion SopE effector N-terminus; InterPro: IPR016018 The type III secretion system of Gram-negative bacteria is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. Effector proteins secreted by the type III system do not possess a secretion signal, and are considered unique because of this. Salmonella spp. secrete an effector protein called SopE that is responsible for stimulating the reorganisation of the host cell actin cytoskeleton, and ruffling of the cellular membrane []. It acts as a guanyl-nucleotide-exchange factor on Rho-GTPase proteins such as Cdc42 and Rac. As it is imperative for the bacterium to revert the cell back to its "normal" state as quickly as possible, another tyrosine phosphatase effector called SptP reverses the actions brought about by SopE []. Recently, it has been found that SopE and its protein homologue SopE2 can activate different sets of Rho-GTPases in the host cell []. Far from being a redundant set of two similar type III effectors, they both act in unison to specifically activate different Rho-GTPase signalling cascades in the host cell during infection. This entry represents the N-terminal domain of SopE. The function of this domain is unknown.
Probab=20.77 E-value=1.1e+02 Score=22.38 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhhh
Q 017053 338 CTSERRILFRAQYILRRRLRDIRSGELRALRLFDNFV 374 (378)
Q Consensus 338 R~~EK~IL~~~~~~l~~~l~~l~~~~~~~~~~~~~~~ 374 (378)
+.-||.++.++|.+++.-+-.++..-.|-|-++.|-|
T Consensus 23 k~TEK~~~aKsI~AVrN~fi~Ls~~LserF~~hkqTe 59 (74)
T PF05364_consen 23 KSTEKNSFAKSITAVRNSFISLSSSLSERFSSHKQTE 59 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhccchHHHHHhhccC
Confidence 5789999999999999999999999888887776654
No 22
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.71 E-value=88 Score=25.85 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=21.3
Q ss_pred CCeEEEEecCcCCCCceeEecCCCCCh
Q 017053 157 SQGVVFTTDRQYQPGEQVFISYGKKSN 183 (378)
Q Consensus 157 ~~~~~~~a~~~i~~Geei~i~YG~~~n 183 (378)
.+++.+...-+=..|.|.||+||..+-
T Consensus 84 rg~vsmanngp~tn~sqffity~kq~h 110 (161)
T KOG0884|consen 84 RGVVSMANNGPNTNGSQFFITYGKQPH 110 (161)
T ss_pred ceeEEcccCCCCCCCceEEEEecCCCc
Confidence 466777777778899999999997543
Done!