Query 017054
Match_columns 378
No_of_seqs 313 out of 1790
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1311 DHHC-type Zn-finger pr 100.0 1.1E-47 2.5E-52 374.4 19.3 222 7-241 50-277 (299)
2 KOG1315 Predicted DHHC-type Zn 100.0 5.8E-42 1.3E-46 332.7 18.3 217 9-245 45-267 (307)
3 PF01529 zf-DHHC: DHHC palmito 100.0 5.1E-40 1.1E-44 294.8 10.8 172 25-206 2-173 (174)
4 KOG1314 DHHC-type Zn-finger pr 100.0 4.9E-37 1.1E-41 296.1 12.3 195 8-232 46-265 (414)
5 COG5273 Uncharacterized protei 100.0 1.6E-33 3.6E-38 275.9 14.0 172 14-206 60-232 (309)
6 KOG1313 DHHC-type Zn-finger pr 100.0 2E-33 4.4E-38 263.9 12.9 153 80-233 102-279 (309)
7 KOG1312 DHHC-type Zn-finger pr 100.0 3.5E-32 7.6E-37 256.7 11.6 176 12-207 100-291 (341)
8 KOG0509 Ankyrin repeat and DHH 99.9 3.1E-28 6.6E-33 250.6 5.7 142 81-229 421-584 (600)
9 COG5273 Uncharacterized protei 95.1 0.23 5E-06 49.3 11.3 176 9-205 58-243 (309)
10 PF01529 zf-DHHC: DHHC palmito 93.0 0.33 7.2E-06 43.1 7.0 53 78-141 60-112 (174)
11 KOG1311 DHHC-type Zn-finger pr 92.7 0.39 8.5E-06 47.0 7.5 41 94-134 113-164 (299)
12 KOG0509 Ankyrin repeat and DHH 92.4 0.13 2.9E-06 54.7 4.0 89 23-134 290-379 (600)
13 PRK15103 paraquat-inducible me 73.9 1E+02 0.0022 32.0 14.5 31 80-110 221-251 (419)
14 PRK04136 rpl40e 50S ribosomal 73.9 1.9 4E-05 31.1 1.3 24 79-102 13-36 (48)
15 PF13240 zinc_ribbon_2: zinc-r 68.4 2.8 6.1E-05 25.5 1.0 21 82-102 1-21 (23)
16 KOG1398 Uncharacterized conser 66.7 6.6 0.00014 40.2 3.8 25 90-120 10-34 (460)
17 PF13248 zf-ribbon_3: zinc-rib 58.9 5 0.00011 24.9 0.9 22 81-102 3-24 (26)
18 PTZ00303 phosphatidylinositol 57.3 5.5 0.00012 44.1 1.5 22 81-102 461-489 (1374)
19 TIGR00155 pqiA_fam integral me 55.3 1.6E+02 0.0034 30.5 11.6 31 80-110 215-246 (403)
20 TIGR00155 pqiA_fam integral me 54.7 1.4E+02 0.0029 30.9 11.1 31 80-110 13-49 (403)
21 PHA02680 ORF090 IMV phosphoryl 53.2 72 0.0016 26.0 6.8 40 157-204 42-81 (91)
22 PF01020 Ribosomal_L40e: Ribos 51.4 11 0.00023 27.8 1.7 25 79-103 16-42 (52)
23 KOG1842 FYVE finger-containing 50.4 4.3 9.4E-05 42.1 -0.6 27 79-105 179-207 (505)
24 PF12773 DZR: Double zinc ribb 46.9 12 0.00026 26.4 1.4 34 80-113 12-48 (50)
25 KOG1315 Predicted DHHC-type Zn 46.2 3.2E+02 0.0069 27.3 13.1 32 93-124 108-139 (307)
26 PF07010 Endomucin: Endomucin; 46.0 39 0.00085 32.3 5.0 20 20-39 203-223 (259)
27 COG1552 RPL40A Ribosomal prote 41.2 5.3 0.00011 28.9 -1.1 25 79-103 13-37 (50)
28 TIGR02484 CitB CitB domain pro 41.1 1.2E+02 0.0027 31.0 8.1 15 95-113 48-62 (372)
29 KOG3183 Predicted Zn-finger pr 40.8 11 0.00025 36.0 0.7 16 100-115 34-49 (250)
30 PF00641 zf-RanBP: Zn-finger i 40.7 14 0.00029 23.5 0.8 21 82-102 6-26 (30)
31 PF10571 UPF0547: Uncharacteri 38.9 17 0.00038 22.7 1.1 22 81-102 1-22 (26)
32 PF10749 DUF2534: Protein of u 38.2 2.1E+02 0.0046 23.0 7.5 17 120-136 9-25 (85)
33 PF10864 DUF2663: Protein of u 37.7 1.8E+02 0.0039 25.5 7.5 18 124-141 22-39 (130)
34 PRK15103 paraquat-inducible me 37.5 2.3E+02 0.005 29.4 9.7 29 81-109 11-45 (419)
35 PF06906 DUF1272: Protein of u 34.8 19 0.00041 26.9 0.9 35 83-120 8-50 (57)
36 KOG1313 DHHC-type Zn-finger pr 33.8 1.6E+02 0.0034 29.1 7.2 133 79-230 115-279 (309)
37 PF08600 Rsm1: Rsm1-like; Int 32.2 23 0.00049 28.8 1.0 14 106-119 53-66 (91)
38 PF14127 DUF4294: Domain of un 31.4 34 0.00073 30.9 2.1 37 195-235 103-139 (157)
39 PF12773 DZR: Double zinc ribb 30.8 29 0.00063 24.4 1.3 23 79-101 28-50 (50)
40 PF01363 FYVE: FYVE zinc finge 30.7 15 0.00033 27.6 -0.2 26 80-105 9-36 (69)
41 PHA02898 virion envelope prote 29.6 2.2E+02 0.0048 23.3 6.2 25 182-206 58-83 (92)
42 KOG1314 DHHC-type Zn-finger pr 29.1 6.5E+02 0.014 25.9 11.0 100 4-132 45-146 (414)
43 PF07649 C1_3: C1-like domain; 26.1 25 0.00055 22.3 0.3 21 82-102 2-23 (30)
44 PF07850 Renin_r: Renin recept 25.6 24 0.00053 29.3 0.1 34 3-37 50-83 (98)
45 PF09889 DUF2116: Uncharacteri 23.1 62 0.0013 24.4 1.9 23 80-102 3-26 (59)
46 smart00064 FYVE Protein presen 21.6 43 0.00093 25.0 0.8 24 81-104 11-36 (68)
47 cd01995 ExsB ExsB is a transcr 20.3 35 0.00075 30.0 0.1 22 83-107 143-164 (169)
No 1
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=1.1e-47 Score=374.38 Aligned_cols=222 Identities=37% Similarity=0.690 Sum_probs=181.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHcc---CCcccCCCCCCCCccCCCCCCCCCCCCCCcCCCCcceeEecceEeeeeec
Q 017054 7 HLGISIMVIVIALTLFALILLLLTSGR---DPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYC 83 (378)
Q Consensus 7 ~~g~~i~vi~~vl~i~~li~l~~ts~~---DPGiiPr~~~~~~~e~~~~~e~~~g~~p~~~~p~~k~v~vng~~~~~k~C 83 (378)
..+..+.++..+++++.++.++.++.+ |||++|++..+. .+ . .+ +.++.+++.++|..++.+||
T Consensus 50 ~~~~~~~~~~~if~~~~~~~~~~~~~~~~sdpg~~p~~~~~~----~~---~----~~--~~~~~~~~~~~~~~~~~~~C 116 (299)
T KOG1311|consen 50 GVSPAVLVLGAIFFLLNILNLMLACFRMLSDPGIVPRADDEQ----IE---D----PE--RAPLYKNVDVNGIQVEWKYC 116 (299)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcccCCCceecCcccCC----CC---C----cc--ccccCCCcccCCcccceEEc
Confidence 456788888888888888888888877 999999975110 01 0 01 45678889999999999999
Q ss_pred ccCCcccCCCCccCccCCcccccCCccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchhhh--h
Q 017054 84 DTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGENVSIW--K 161 (378)
Q Consensus 84 ~tC~i~rPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rN~r~F~lFL~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~--~ 161 (378)
.+|+.+||||||||++||+||+||||||||+|||||+||||||++|++++++++++.+++++..+...........+ .
T Consensus 117 ~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (299)
T KOG1311|consen 117 DTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRADNLKVNLTPVL 196 (299)
T ss_pred CcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999988887665443333322 2
Q ss_pred hhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhc-ccCCCCCCCCHHHHHHHHHhcCCCCCCCcccccc
Q 017054 162 AMTKSPASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFRN-RYDEHVNPYNKGVIKNFMEVFCTSIPTSKNNFRA 240 (378)
Q Consensus 162 ~~~~~~~~i~l~i~~~l~~~~v~~L~~~hlylI~~N~TT~E~~r~-r~~~~~nPyd~G~~~N~~evfg~~~~ps~~~fr~ 240 (378)
........++++++++++++++++|+.||+++|.+|+||+|.++. +.+.+.+||++|.++|++++||.+.+++....+.
T Consensus 197 ~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~~~~~~~~~~~~~g~~~n~~~~~~~~~~~~~~~p~~ 276 (299)
T KOG1311|consen 197 IPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKSLDFVSRSNPYDLGLLKNLQEVFGGPLPLSWLSPFA 276 (299)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhccccccccCCCchhHHHHHHHHhCCCCCcccccccc
Confidence 222334456667788899999999999999999999999999884 4444469999999999999999998887766554
Q ss_pred c
Q 017054 241 K 241 (378)
Q Consensus 241 ~ 241 (378)
.
T Consensus 277 ~ 277 (299)
T KOG1311|consen 277 R 277 (299)
T ss_pred c
Confidence 3
No 2
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=5.8e-42 Score=332.65 Aligned_cols=217 Identities=31% Similarity=0.571 Sum_probs=156.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCCCCccCCCCCCCCCCCCCCcCCCCcceeEecceEeeeeecccCCc
Q 017054 9 GISIMVIVIALTLFALILLLLTSGRDPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCDTCMH 88 (378)
Q Consensus 9 g~~i~vi~~vl~i~~li~l~~ts~~DPGiiPr~~~~~~~e~~~~~e~~~g~~p~~~~p~~k~v~vng~~~~~k~C~tC~i 88 (378)
....++++.++.++.++.|+.+.++|||.+|..+.+...+ .+..+- + ...++.+.+...+...+.|||.+|+.
T Consensus 45 ~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~-~~~~~~--~----~~~~~~~~~~~~~~~g~~R~C~kC~~ 117 (307)
T KOG1315|consen 45 SVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVED-EDSLEN--G----SDNERDLPGYTRTSDGAVRYCDKCKC 117 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCc-cccccc--c----CcccccceeeEecCCCCceeeccccc
Confidence 4455666777778888899999999999999988764332 111111 0 01122333344455668999999999
Q ss_pred ccCCCCccCccCCcccccCCccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-c-hhhhhhhhcC
Q 017054 89 YRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGE-N-VSIWKAMTKS 166 (378)
Q Consensus 89 ~rPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rN~r~F~lFL~~~~l~~i~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~ 166 (378)
+||+|||||++|++||+||||||||+|||||.+|||||++||+|+++.++++++.....+....... . ...+.
T Consensus 118 iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~~~~~~~~~~~~~~----- 192 (307)
T KOG1315|consen 118 IKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTKYFQGGAGPSSLLL----- 192 (307)
T ss_pred ccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhHH-----
Confidence 9999999999999999999999999999999999999999999999999988877665554443111 0 01111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcc----cCCCCCCCCHHHHHHHHHhcCCCCCCCcccccccC
Q 017054 167 PASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFRNR----YDEHVNPYNKGVIKNFMEVFCTSIPTSKNNFRAKI 242 (378)
Q Consensus 167 ~~~i~l~i~~~l~~~~v~~L~~~hlylI~~N~TT~E~~r~r----~~~~~nPyd~G~~~N~~evfg~~~~ps~~~fr~~v 242 (378)
...+++++..+.+.+.+++|+++|++||++|+||+|.++.. .....+.|+. ..|+.++||.+ ...|.+
T Consensus 193 ~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~~~~~~~~~~~~--~~n~~~vfg~~------~~~wl~ 264 (307)
T KOG1315|consen 193 FFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVFRSGLHNKNGFNL--YVNFREVFGSN------LLYWLL 264 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhccccccccccccCCcce--eecHHHHhCCC------ceEEec
Confidence 11223344444455556679999999999999999998764 2234566766 78999999975 356777
Q ss_pred CCC
Q 017054 243 PKE 245 (378)
Q Consensus 243 p~~ 245 (378)
|.+
T Consensus 265 P~~ 267 (307)
T KOG1315|consen 265 PID 267 (307)
T ss_pred ccc
Confidence 763
No 3
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=5.1e-40 Score=294.84 Aligned_cols=172 Identities=35% Similarity=0.677 Sum_probs=126.3
Q ss_pred HHHHHHHccCCcccCCCCCCCCccCCCCCCCCCCCCCCcCCCCcceeEecceEeeeeecccCCcccCCCCccCccCCccc
Q 017054 25 ILLLLTSGRDPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCDTCMHYRPPRCSHCSICNNCV 104 (378)
Q Consensus 25 i~l~~ts~~DPGiiPr~~~~~~~e~~~~~e~~~g~~p~~~~p~~k~v~vng~~~~~k~C~tC~i~rPpRs~HC~~C~~CV 104 (378)
++|+++.++|||++|+........ .+..+ .......+...++...+.++|.+|+++||+|||||+.||+||
T Consensus 2 ~~~~~~~~~dPG~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV 72 (174)
T PF01529_consen 2 WSYFLTIFIDPGYVPRSNPDEDQR-QEEKE--------EEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCV 72 (174)
T ss_pred EEehhhheECCcccCCcccccccc-ccccc--------cccchhhhhhccccCCCCEECcccCCcCCCcceecccccccc
Confidence 468899999999999972111111 00000 001112223334456688999999999999999999999999
Q ss_pred ccCCccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchhhhhhhhcCchhHHHHHHHHHHHHHHH
Q 017054 105 QKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGENVSIWKAMTKSPASIALIIYTFISVWFVG 184 (378)
Q Consensus 105 ~rfDHHCpWvgnCIG~rN~r~F~lFL~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~l~i~~~l~~~~v~ 184 (378)
+||||||+|+|||||++|||+|++|+++.++.+++.++.++.++...........+... .....+++++++++.+++++
T Consensus 73 ~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 151 (174)
T PF01529_consen 73 LRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISFSSFWIF-SNFSSIFLLIISIFFFIFVG 151 (174)
T ss_pred ccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-hhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888777666544332222111111 11112566677788888899
Q ss_pred HHHHHHHHHHhhcccchhhhhc
Q 017054 185 GLTVFHSYLISRNQSTYENFRN 206 (378)
Q Consensus 185 ~L~~~hlylI~~N~TT~E~~r~ 206 (378)
.|+++|+++|++|+||+|.+++
T Consensus 152 ~l~~~~~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 152 FLLIFQLYLILRNITTYERIKR 173 (174)
T ss_pred HHHHHHHHHHHcCCcHHHHHHc
Confidence 9999999999999999999875
No 4
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=4.9e-37 Score=296.13 Aligned_cols=195 Identities=25% Similarity=0.493 Sum_probs=137.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCCCCccCCCCCCCCCCCCCCcCCCCcceeEecceEeeeeecccCC
Q 017054 8 LGISIMVIVIALTLFALILLLLTSGRDPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCDTCM 87 (378)
Q Consensus 8 ~g~~i~vi~~vl~i~~li~l~~ts~~DPGiiPr~~~~~~~e~~~~~e~~~g~~p~~~~p~~k~v~vng~~~~~k~C~tC~ 87 (378)
.|..-.+.+.+.+.+.+..|+.++++.||++|++|+|..+.+ +...+||..|+
T Consensus 46 ~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D---------------------------~~~lqfCk~Cq 98 (414)
T KOG1314|consen 46 LGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKD---------------------------EMFLQFCKKCQ 98 (414)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChh---------------------------HHHHHHHhhcc
Confidence 445555666667778888999999999999999998854321 12578999999
Q ss_pred cccCCCCccCccCCcccccCCccCccccccccccchHHHHHHHHHHHHHHHHHHH--HHHhh--hhhh----ccCCchhh
Q 017054 88 HYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHA--FCWIR--IRKI----MNGENVSI 159 (378)
Q Consensus 88 i~rPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rN~r~F~lFL~~~~l~~i~~~~--~~~~~--i~~~----~~~~~~~~ 159 (378)
-||+||||||+.|||||.+|||||||+|||||..||.||+.||++..+.|+...+ ++..+ +... +......
T Consensus 99 gYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g~~hlp- 177 (414)
T KOG1314|consen 99 GYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHLP- 177 (414)
T ss_pred CcCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhhcccccCc-
Confidence 9999999999999999999999999999999999999999999999997775221 11111 0000 0111100
Q ss_pred hhhhhcCchhHHHHHHHH----HHHHHHHHHHHHHHHHHhhcccchhhhh-------ccc------CCCCCCCCHHHHHH
Q 017054 160 WKAMTKSPASIALIIYTF----ISVWFVGGLTVFHSYLISRNQSTYENFR-------NRY------DEHVNPYNKGVIKN 222 (378)
Q Consensus 160 ~~~~~~~~~~i~l~i~~~----l~~~~v~~L~~~hlylI~~N~TT~E~~r-------~r~------~~~~nPyd~G~~~N 222 (378)
.+.-++.+++.+++++ ..++.++.|++.|+..|.+|+|.+|.+- ..+ ..-.-|||.|+..|
T Consensus 178 --~v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlgWr~n 255 (414)
T KOG1314|consen 178 --IVFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLGWRIN 255 (414)
T ss_pred --eeeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCceeeecccccccc
Confidence 0011222333333322 2233456788889999999999999873 111 11246999997779
Q ss_pred HHHhcCCCCC
Q 017054 223 FMEVFCTSIP 232 (378)
Q Consensus 223 ~~evfg~~~~ 232 (378)
+++||.....
T Consensus 256 ~r~vf~~~~~ 265 (414)
T KOG1314|consen 256 LREVFFQNKK 265 (414)
T ss_pred HHHHhhhccc
Confidence 9999987643
No 5
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=275.88 Aligned_cols=172 Identities=32% Similarity=0.598 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHccCCcccCCCCCCCCccCCCCCCCCCCCCCCcCCCCcceeEecceEeeeeecccCCcccCCC
Q 017054 14 VIVIALTLFALILLLLTSGRDPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCDTCMHYRPPR 93 (378)
Q Consensus 14 vi~~vl~i~~li~l~~ts~~DPGiiPr~~~~~~~e~~~~~e~~~g~~p~~~~p~~k~v~vng~~~~~k~C~tC~i~rPpR 93 (378)
+..++....+.++++.....|||+.+++......++.. +.....|.....+||.+|+.+||+|
T Consensus 60 i~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~C~~C~~~KP~R 122 (309)
T COG5273 60 ILFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETI-----------------SRLLDDGKFGTENFCSTCNIYKPPR 122 (309)
T ss_pred hhhhhhhhhHHHhhHHHhhcCCCccCccccccchhhhh-----------------hhhhhcCccccceeccccccccCCC
Confidence 33344444566778889999999999765432222111 1111223445789999999999999
Q ss_pred CccCccCCcccccCCccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-chhhhhhhhcCchhHHH
Q 017054 94 CSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGE-NVSIWKAMTKSPASIAL 172 (378)
Q Consensus 94 s~HC~~C~~CV~rfDHHCpWvgnCIG~rN~r~F~lFL~~~~l~~i~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~i~l 172 (378)
||||+.||+||+||||||||+|||||++|||+|++||+++...+++++..++.++....+.. ..+.+... ....+
T Consensus 123 S~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----li~~~ 198 (309)
T COG5273 123 SHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAICF----LIFGC 198 (309)
T ss_pred CccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHH----HHHhh
Confidence 99999999999999999999999999999999999999999988888888877776654322 22222110 00011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhc
Q 017054 173 IIYTFISVWFVGGLTVFHSYLISRNQSTYENFRN 206 (378)
Q Consensus 173 ~i~~~l~~~~v~~L~~~hlylI~~N~TT~E~~r~ 206 (378)
..+....++++..++++|.+++..|+||+|.++.
T Consensus 199 ~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~ 232 (309)
T COG5273 199 SLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQI 232 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 2233334455677889999999999999998754
No 6
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=2e-33 Score=263.86 Aligned_cols=153 Identities=33% Similarity=0.636 Sum_probs=116.9
Q ss_pred eeecccCCcccCCCCccCccCCcccccCCccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-ch-
Q 017054 80 IKYCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGE-NV- 157 (378)
Q Consensus 80 ~k~C~tC~i~rPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rN~r~F~lFL~~~~l~~i~~~~~~~~~i~~~~~~~-~~- 157 (378)
..+|.+|+-+||||+|||++||+||++|||||||+|||||..||||||+|++|+++.+.|..+++...+....... ..
T Consensus 102 ~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~t 181 (309)
T KOG1313|consen 102 DSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEIT 181 (309)
T ss_pred ccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhcc
Confidence 4689999999999999999999999999999999999999999999999999999999998877654443322110 00
Q ss_pred -------------h---hhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhccc-------CCCCCC
Q 017054 158 -------------S---IWKAMTKSPASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFRNRY-------DEHVNP 214 (378)
Q Consensus 158 -------------~---~~~~~~~~~~~i~l~i~~~l~~~~v~~L~~~hlylI~~N~TT~E~~r~r~-------~~~~nP 214 (378)
+ ..+.+..+. ...+.+.++..++.++.|..+|.++|.++.|.+|.....+ +.+.||
T Consensus 182 ay~~d~~h~~Pp~~i~r~~~~i~~t~-~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~R~~~ 260 (309)
T KOG1313|consen 182 AYASDVAHVAPPPSILRVYKNITRTS-IANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAHLRSNP 260 (309)
T ss_pred cccCcccccCCChhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHhccCCC
Confidence 0 011111111 1124445555667789999999999999999999774321 345799
Q ss_pred CCHHHHHHHHHhcCCCCCC
Q 017054 215 YNKGVIKNFMEVFCTSIPT 233 (378)
Q Consensus 215 yd~G~~~N~~evfg~~~~p 233 (378)
++.|..+||+.+++-..-|
T Consensus 261 ~n~g~k~nWr~fLg~~~~r 279 (309)
T KOG1313|consen 261 TNFGGKANWRNFLGLFRGR 279 (309)
T ss_pred cccchHHHHHHhhccccCC
Confidence 9999999999999866444
No 7
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.97 E-value=3.5e-32 Score=256.74 Aligned_cols=176 Identities=32% Similarity=0.659 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCcccCCCCCCCCccCCCCCCCCCCCCCCcCCCCcceeEecceEeeeeecccCCcccC
Q 017054 12 IMVIVIALTLFALILLLLTSGRDPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCDTCMHYRP 91 (378)
Q Consensus 12 i~vi~~vl~i~~li~l~~ts~~DPGiiPr~~~~~~~e~~~~~e~~~g~~p~~~~p~~k~v~vng~~~~~k~C~tC~i~rP 91 (378)
-.+..+.+.+..++++.+|+.+|||++.+.......+.+ | .++++ -.+.+.|+||++.||
T Consensus 100 ~~il~~l~vivp~i~f~ltc~snpg~i~k~n~s~~~~~y---------------p-YDy~i----f~k~~kCSTCki~KP 159 (341)
T KOG1312|consen 100 YLILPYLLVIVPLIFFTLTCGSNPGIITKANESLFLHVY---------------P-YDYVI----FPKNVKCSTCKIRKP 159 (341)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCccchhhhccceecc---------------C-cccee----ecCCCccccccCCCc
Confidence 344445556677889999999999999765421111111 1 11111 124478999999999
Q ss_pred CCCccCccCCcccccCCccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-c----hhh-hhhhhc
Q 017054 92 PRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGE-N----VSI-WKAMTK 165 (378)
Q Consensus 92 pRs~HC~~C~~CV~rfDHHCpWvgnCIG~rN~r~F~lFL~~~~l~~i~~~~~~~~~i~~~~~~~-~----~~~-~~~~~~ 165 (378)
+||||||+||+||+||||||.|+|||||++|+|||++||++...++.|.+.-.+......+... + ... |.....
T Consensus 160 ARSKHCsiCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaivrlgfi~ln~~sdl~q~v~ilt~~~g~~ks 239 (341)
T KOG1312|consen 160 ARSKHCSICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAIVRLGFIVLNVMSDLYQEVYILTLGHGHVKS 239 (341)
T ss_pred cccccchHHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHHHHHHHheehhhccccchheeeeeeeecchhh
Confidence 9999999999999999999999999999999999999999998888886654433311111111 0 011 111111
Q ss_pred CchhHHHHHHH---------HHH-HHHHHHHHHHHHHHHhhcccchhhhhcc
Q 017054 166 SPASIALIIYT---------FIS-VWFVGGLTVFHSYLISRNQSTYENFRNR 207 (378)
Q Consensus 166 ~~~~i~l~i~~---------~l~-~~~v~~L~~~hlylI~~N~TT~E~~r~r 207 (378)
....+-.++.+ +.. ..++++.+.+-+|+-++|+||.|+.+.+
T Consensus 240 ~~~L~~yl~la~~~~v~~l~~~~~~~~~~~Y~~f~~y~~~t~~~~~~W~~~d 291 (341)
T KOG1312|consen 240 TVFLIQYLFLAFPRIVFMLGFVVVLSFLGGYLLFVLYLAATNQTTNEWYRGD 291 (341)
T ss_pred HHHHHHHHHHHhccceeeeehhhhhhHhHHHHHHHHHHHhccCCchhhhccc
Confidence 11111111111 111 2246677788899999999999988753
No 8
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.94 E-value=3.1e-28 Score=250.63 Aligned_cols=142 Identities=30% Similarity=0.713 Sum_probs=102.4
Q ss_pred eecccCCcccCCCCccCccCCcccccCCccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchhhh
Q 017054 81 KYCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRKIMNGENVSIW 160 (378)
Q Consensus 81 k~C~tC~i~rPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rN~r~F~lFL~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~ 160 (378)
+||.+|.+.||.|+|||++|||||.||||||||++||||.+|||+|+.|+++....+.++++.+..|+....... .+|
T Consensus 421 ~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~~--~~~ 498 (600)
T KOG0509|consen 421 RFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYIMNLENAS--TIY 498 (600)
T ss_pred cceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH--HHH
Confidence 799999999999999999999999999999999999999999999999999999999888888877765443211 112
Q ss_pred hhhhcCchhHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhcccchhhhhccc--------CCCCCCCCHH
Q 017054 161 KAMTKSPASIALIIYTF--------------ISVWFVGGLTVFHSYLISRNQSTYENFRNRY--------DEHVNPYNKG 218 (378)
Q Consensus 161 ~~~~~~~~~i~l~i~~~--------------l~~~~v~~L~~~hlylI~~N~TT~E~~r~r~--------~~~~nPyd~G 218 (378)
.... +.+..+.. ...+-.+...+-|-..++.+.||+|.+..+. ....+|++.|
T Consensus 499 ~~~l-----~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~~~~~~~~~c~~~tt~e~~n~~r~~~~~~~~~~~~~~~s~g 573 (600)
T KOG0509|consen 499 VGFL-----IAVQAFRIPKPVTGNLLGNEDLNPTWGSTSTKCQHYNCACLHLTTNEQINVKRYEHLGIKRGPTRSPFSPG 573 (600)
T ss_pred HHHH-----HHHHHHhCCccceeeeeeccccccccccccccccccceeeecccHHHHHHHHHhhccccccCcCCCCCCch
Confidence 1110 00000000 0011112222334456889999999885422 1246899999
Q ss_pred HHHHHHHhcCC
Q 017054 219 VIKNFMEVFCT 229 (378)
Q Consensus 219 ~~~N~~evfg~ 229 (378)
+.+|+.++|-.
T Consensus 574 ~~~Nl~df~~~ 584 (600)
T KOG0509|consen 574 PIRNLVDFFLC 584 (600)
T ss_pred hhhcchheeec
Confidence 99999999853
No 9
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=95.11 E-value=0.23 Score=49.29 Aligned_cols=176 Identities=19% Similarity=0.250 Sum_probs=90.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHccCCccc----CCCCCCCCccCCCCCCCCCCCCCCcCCCCcceeEecceEeeeeecc
Q 017054 9 GISIMVIVIALTLFALILLLLTSGRDPGVI----ARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCD 84 (378)
Q Consensus 9 g~~i~vi~~vl~i~~li~l~~ts~~DPGii----Pr~~~~~~~e~~~~~e~~~g~~p~~~~p~~k~v~vng~~~~~k~C~ 84 (378)
..+..++.+++..+..+.++.+.-.-||.- ..+... ...++.... ..+.+.. +.+.. ++-+.++|.
T Consensus 58 ~~i~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~C~-~C~~~----KP~RS~HC~ 127 (309)
T COG5273 58 FIILFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETI--SRLLDDGKF---GTENFCS-TCNIY----KPPRSHHCS 127 (309)
T ss_pred hhhhhhhhhhhHHHhhHHHhhcCCCccCccccccchhhhh--hhhhhcCcc---ccceecc-ccccc----cCCCCccch
Confidence 345666777788888888888887777732 111111 111111000 0111100 00000 112567899
Q ss_pred cCCcccCCCCccCccCCcccccCCccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhhh-hhccCCch---hhh
Q 017054 85 TCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIR-KIMNGENV---SIW 160 (378)
Q Consensus 85 tC~i~rPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rN~r~F~lFL~~~~l~~i~~~~~~~~~i~-~~~~~~~~---~~~ 160 (378)
+|+.=-.-.=|||.-=|+||-+--| |=.-.|++++.+..+..++....-...+. ...+.... .++
T Consensus 128 ~Cn~CV~k~DHHC~Wi~nCVG~~N~-----------r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 196 (309)
T COG5273 128 ICNRCVLKFDHHCPWINNCVGFRNY-----------RFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAICFLIF 196 (309)
T ss_pred hhcchhhccCccCcccccccCcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHH
Confidence 9999999999999999999997544 56778888875555443332221111111 11111111 111
Q ss_pred h--hhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhh
Q 017054 161 K--AMTKSPASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENFR 205 (378)
Q Consensus 161 ~--~~~~~~~~i~l~i~~~l~~~~v~~L~~~hlylI~~N~TT~E~~r 205 (378)
. .+......+..++..+.....+..++.++.+.+.++.++-|...
T Consensus 197 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~ 243 (309)
T COG5273 197 GCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFP 243 (309)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccc
Confidence 1 11100111122222233333455677778888999999887654
No 10
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=92.98 E-value=0.33 Score=43.10 Aligned_cols=53 Identities=19% Similarity=0.461 Sum_probs=39.6
Q ss_pred eeeeecccCCcccCCCCccCccCCcccccCCccCccccccccccchHHHHHHHHHHHHHHHHHH
Q 017054 78 VKIKYCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVH 141 (378)
Q Consensus 78 ~~~k~C~tC~i~rPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rN~r~F~lFL~~~~l~~i~~~ 141 (378)
.+.++|..|+.-...+-|||..-++||-+--| +-+=.|+++.....+..++..
T Consensus 60 ~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~~ 112 (174)
T PF01529_consen 60 PRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNH-----------RYFLLFLLYLCLYCLYFFILS 112 (174)
T ss_pred CcceeccccccccccccccchhhccccccccH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998655 456677766655555544433
No 11
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=92.65 E-value=0.39 Score=47.03 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=35.2
Q ss_pred CccCccCCcccccCCccCccccccccccch-----------HHHHHHHHHHH
Q 017054 94 CSHCSICNNCVQKFDHHCPWVGQCIGLRNY-----------RFFFMFVFSTT 134 (378)
Q Consensus 94 s~HC~~C~~CV~rfDHHCpWvgnCIG~rN~-----------r~F~lFL~~~~ 134 (378)
.++|..|+..+.+.-|||..=|+||-+.-| |-+-.|+.++.
T Consensus 113 ~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~ 164 (299)
T KOG1311|consen 113 WKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF 164 (299)
T ss_pred eEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence 899999999999999999999999988865 44557885555
No 12
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=92.38 E-value=0.13 Score=54.75 Aligned_cols=89 Identities=20% Similarity=0.023 Sum_probs=63.3
Q ss_pred HHHHHHHHHccCCcccCCCCCCCCccCCCCCCCCCCCCCCcCCCCcceeEecceEeeeeecccCCcccCCCCccCccCCc
Q 017054 23 ALILLLLTSGRDPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIKYCDTCMHYRPPRCSHCSICNN 102 (378)
Q Consensus 23 ~li~l~~ts~~DPGiiPr~~~~~~~e~~~~~e~~~g~~p~~~~p~~k~v~vng~~~~~k~C~tC~i~rPpRs~HC~~C~~ 102 (378)
.++.++.++.-+||+|--..+ .- .+. + +. -+.-+-..+|.+|.+..+-+..+|..|-.
T Consensus 290 ~~~~~~~~~~~~~g~i~~~~~-~w--~i~------~--~~-----------L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (600)
T KOG0509|consen 290 FLGLFYFISSWLPGVIFLINS-LW--LIK------G--LA-----------LGKLVLTCLCATRKIVGFLLRPPLLSGFF 347 (600)
T ss_pred HHHHHHHHHhhccchhhhhhh-HH--HHh------h--hh-----------hhhhhhheeccchhhccccccchhHHHHH
Confidence 555666777889999965432 10 000 0 00 01123456899999999999999999999
Q ss_pred ccccCCccCccccccccccchHHHHH-HHHHHH
Q 017054 103 CVQKFDHHCPWVGQCIGLRNYRFFFM-FVFSTT 134 (378)
Q Consensus 103 CV~rfDHHCpWvgnCIG~rN~r~F~l-FL~~~~ 134 (378)
|+..|++||+|+. ||+.+|-..|.+ ||++..
T Consensus 348 ~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l 379 (600)
T KOG0509|consen 348 LSTLFWFYYFWFS-KITPYTLFDFHYCFIISVL 379 (600)
T ss_pred HHHHHHHHHhhhe-eccchhhhhhHHHHHHHHH
Confidence 9999999999999 999999876644 444433
No 13
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=73.92 E-value=1e+02 Score=32.02 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=24.1
Q ss_pred eeecccCCcccCCCCccCccCCcccccCCcc
Q 017054 80 IKYCDTCMHYRPPRCSHCSICNNCVQKFDHH 110 (378)
Q Consensus 80 ~k~C~tC~i~rPpRs~HC~~C~~CV~rfDHH 110 (378)
..-|+.|...-|....||..|+.-..+..++
T Consensus 221 l~~C~~Cd~l~~~~~a~CpRC~~~L~~~~~~ 251 (419)
T PRK15103 221 LRSCSCCTAILPADQPVCPRCHTKGYVRRRN 251 (419)
T ss_pred CCcCCCCCCCCCCCCCCCCCCCCcCcCCCCC
Confidence 4569999998887777899998877665544
No 14
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=73.87 E-value=1.9 Score=31.12 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=22.0
Q ss_pred eeeecccCCcccCCCCccCccCCc
Q 017054 79 KIKYCDTCMHYRPPRCSHCSICNN 102 (378)
Q Consensus 79 ~~k~C~tC~i~rPpRs~HC~~C~~ 102 (378)
..+.|..|...-|+|+..|+.|+.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 467899999999999999999986
No 15
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=68.35 E-value=2.8 Score=25.50 Aligned_cols=21 Identities=24% Similarity=0.662 Sum_probs=18.0
Q ss_pred ecccCCcccCCCCccCccCCc
Q 017054 82 YCDTCMHYRPPRCSHCSICNN 102 (378)
Q Consensus 82 ~C~tC~i~rPpRs~HC~~C~~ 102 (378)
||+.|...-++.+..|..|+.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 688898888999999988874
No 16
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.66 E-value=6.6 Score=40.16 Aligned_cols=25 Identities=40% Similarity=0.838 Sum_probs=19.2
Q ss_pred cCCCCccCccCCcccccCCccCccccccccc
Q 017054 90 RPPRCSHCSICNNCVQKFDHHCPWVGQCIGL 120 (378)
Q Consensus 90 rPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~ 120 (378)
+-.|..||-.|+. +|| +|+.||||.
T Consensus 10 sl~~p~l~~tC~e----~~h--~w~~~c~ga 34 (460)
T KOG1398|consen 10 SLARPSLAETCDE----ADH--SWVANCIGA 34 (460)
T ss_pred hhcCchHhhhhhh----ccC--CcccchhHH
Confidence 3456678888864 777 799999997
No 17
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=58.87 E-value=5 Score=24.91 Aligned_cols=22 Identities=23% Similarity=0.680 Sum_probs=18.5
Q ss_pred eecccCCcccCCCCccCccCCc
Q 017054 81 KYCDTCMHYRPPRCSHCSICNN 102 (378)
Q Consensus 81 k~C~tC~i~rPpRs~HC~~C~~ 102 (378)
++|..|...-++-++.|..|+.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 5789998888888999988874
No 18
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=57.32 E-value=5.5 Score=44.06 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=18.3
Q ss_pred eecccCCcccC-------CCCccCccCCc
Q 017054 81 KYCDTCMHYRP-------PRCSHCSICNN 102 (378)
Q Consensus 81 k~C~tC~i~rP-------pRs~HC~~C~~ 102 (378)
+.|..|+..-. -|-|||+.|++
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCcc
Confidence 57999988775 39999999876
No 19
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=55.26 E-value=1.6e+02 Score=30.50 Aligned_cols=31 Identities=16% Similarity=0.474 Sum_probs=21.9
Q ss_pred eeecccCCc-ccCCCCccCccCCcccccCCcc
Q 017054 80 IKYCDTCMH-YRPPRCSHCSICNNCVQKFDHH 110 (378)
Q Consensus 80 ~k~C~tC~i-~rPpRs~HC~~C~~CV~rfDHH 110 (378)
..-|+.|.. ..|....+|..|+.-..+..++
T Consensus 215 ~~~C~~Cd~~~~~~~~a~CpRC~~~L~~~~~~ 246 (403)
T TIGR00155 215 LRSCSACHTTILPAQEPVCPRCSTPLYVRRRN 246 (403)
T ss_pred CCcCCCCCCccCCCCCcCCcCCCCcccCCCCC
Confidence 445999987 4555667888888877665544
No 20
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=54.68 E-value=1.4e+02 Score=30.94 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=19.4
Q ss_pred eeecccCCccc--C----CCCccCccCCcccccCCcc
Q 017054 80 IKYCDTCMHYR--P----PRCSHCSICNNCVQKFDHH 110 (378)
Q Consensus 80 ~k~C~tC~i~r--P----pRs~HC~~C~~CV~rfDHH 110 (378)
..-|+.|...- | ...-+|..|+.-..+.+++
T Consensus 13 ~~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~~ 49 (403)
T TIGR00155 13 HILCSQCDMLVALPRIESGQKAACPRCGTTLTVGWDW 49 (403)
T ss_pred eeeCCCCCCcccccCCCCCCeeECCCCCCCCcCCCCC
Confidence 34588886322 2 2344688888877766554
No 21
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=53.19 E-value=72 Score=26.00 Aligned_cols=40 Identities=28% Similarity=0.512 Sum_probs=21.9
Q ss_pred hhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhh
Q 017054 157 VSIWKAMTKSPASIALIIYTFISVWFVGGLTVFHSYLISRNQSTYENF 204 (378)
Q Consensus 157 ~~~~~~~~~~~~~i~l~i~~~l~~~~v~~L~~~hlylI~~N~TT~E~~ 204 (378)
...|+++ +++.++..++ .+.++++|..|-=++..+++|.+
T Consensus 42 ~~~wRal-----Sii~FIlG~v---l~lGilifs~y~~C~~~~~~~r~ 81 (91)
T PHA02680 42 DYVWRAL-----SVTCFIVGAV---LLLGLFVFSMYRKCSGSMPYERL 81 (91)
T ss_pred chhHHHH-----HHHHHHHHHH---HHHHHHHHHHhcccCCCceeecc
Confidence 5578754 2333333332 34457777777666666666544
No 22
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=51.36 E-value=11 Score=27.76 Aligned_cols=25 Identities=28% Similarity=0.794 Sum_probs=16.9
Q ss_pred eeeecccCCcccCCCCccCcc--CCcc
Q 017054 79 KIKYCDTCMHYRPPRCSHCSI--CNNC 103 (378)
Q Consensus 79 ~~k~C~tC~i~rPpRs~HC~~--C~~C 103 (378)
..+.|..|...-|||+..|+. |+.+
T Consensus 16 ~k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 16 DKMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp S-EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred cceecccccCcCCCCccceecccCCCC
Confidence 357899999999999999998 8764
No 23
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=50.42 E-value=4.3 Score=42.06 Aligned_cols=27 Identities=22% Similarity=0.746 Sum_probs=20.6
Q ss_pred eeeecccCCccc--CCCCccCccCCcccc
Q 017054 79 KIKYCDTCMHYR--PPRCSHCSICNNCVQ 105 (378)
Q Consensus 79 ~~k~C~tC~i~r--PpRs~HC~~C~~CV~ 105 (378)
.+++|+.|...- --|-|||+.||+-+=
T Consensus 179 ~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC 207 (505)
T KOG1842|consen 179 SVQFCPECANSFGLTRRRHHCRLCGRVMC 207 (505)
T ss_pred cccccccccchhhhHHHhhhhhhcchHHH
Confidence 468999996543 348999999998543
No 24
>PF12773 DZR: Double zinc ribbon
Probab=46.95 E-value=12 Score=26.43 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=22.0
Q ss_pred eeecccCCcccC---CCCccCccCCcccccCCccCcc
Q 017054 80 IKYCDTCMHYRP---PRCSHCSICNNCVQKFDHHCPW 113 (378)
Q Consensus 80 ~k~C~tC~i~rP---pRs~HC~~C~~CV~rfDHHCpW 113 (378)
.+||..|...-+ .....|..|+.=+...+.+|+.
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence 467777766665 3356677777766666666653
No 25
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=46.21 E-value=3.2e+02 Score=27.33 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=28.9
Q ss_pred CCccCccCCcccccCCccCccccccccccchH
Q 017054 93 RCSHCSICNNCVQKFDHHCPWVGQCIGLRNYR 124 (378)
Q Consensus 93 Rs~HC~~C~~CV~rfDHHCpWvgnCIG~rN~r 124 (378)
+.+.|..|+.-....-|||.--+.||.+.-|.
T Consensus 108 ~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHH 139 (307)
T KOG1315|consen 108 AVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHH 139 (307)
T ss_pred CceeecccccccCCccccchhhhhhhhccccC
Confidence 77899999999999999999999999988664
No 26
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=45.98 E-value=39 Score=32.26 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=11.1
Q ss_pred HHHHHHHHHH-HHccCCcccC
Q 017054 20 TLFALILLLL-TSGRDPGVIA 39 (378)
Q Consensus 20 ~i~~li~l~~-ts~~DPGiiP 39 (378)
.++.|+-||+ +--+|||+.-
T Consensus 203 ~vf~LvgLyr~C~k~dPg~p~ 223 (259)
T PF07010_consen 203 SVFTLVGLYRMCWKTDPGTPE 223 (259)
T ss_pred HHHHHHHHHHHhhcCCCCCcc
Confidence 3444444444 4458999543
No 27
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=41.24 E-value=5.3 Score=28.94 Aligned_cols=25 Identities=32% Similarity=0.808 Sum_probs=21.8
Q ss_pred eeeecccCCcccCCCCccCccCCcc
Q 017054 79 KIKYCDTCMHYRPPRCSHCSICNNC 103 (378)
Q Consensus 79 ~~k~C~tC~i~rPpRs~HC~~C~~C 103 (378)
..+.|..|...-|+|+--|+.|+.=
T Consensus 13 ~kkIC~rC~Arnp~~A~kCRkC~~k 37 (50)
T COG1552 13 NKKICRRCYARNPPRATKCRKCGYK 37 (50)
T ss_pred hHHHHHHhcCCCCcchhHHhhccCC
Confidence 4578999999999999999998753
No 28
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=41.13 E-value=1.2e+02 Score=31.03 Aligned_cols=15 Identities=33% Similarity=1.035 Sum_probs=12.9
Q ss_pred ccCccCCcccccCCccCcc
Q 017054 95 SHCSICNNCVQKFDHHCPW 113 (378)
Q Consensus 95 ~HC~~C~~CV~rfDHHCpW 113 (378)
..|..|++| +|+||.
T Consensus 48 ~lChnC~~C----~~~CPy 62 (372)
T TIGR02484 48 HLCHDCQSC----WHDCQY 62 (372)
T ss_pred HHCcCcccc----cccCcC
Confidence 789999999 579998
No 29
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=40.79 E-value=11 Score=35.99 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=11.9
Q ss_pred CCcccccCCccCcccc
Q 017054 100 CNNCVQKFDHHCPWVG 115 (378)
Q Consensus 100 C~~CV~rfDHHCpWvg 115 (378)
|-.-..+.+|||||..
T Consensus 34 C~eHrsye~H~Cp~~~ 49 (250)
T KOG3183|consen 34 CLEHRSYESHHCPKGL 49 (250)
T ss_pred hhccchHhhcCCCccc
Confidence 3445667899999975
No 30
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=40.73 E-value=14 Score=23.54 Aligned_cols=21 Identities=29% Similarity=0.804 Sum_probs=16.3
Q ss_pred ecccCCcccCCCCccCccCCc
Q 017054 82 YCDTCMHYRPPRCSHCSICNN 102 (378)
Q Consensus 82 ~C~tC~i~rPpRs~HC~~C~~ 102 (378)
.|..|...-+++..+|..|+.
T Consensus 6 ~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 6 KCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp EETTTTEEEESSSSB-TTT--
T ss_pred cCCCCcCCchHHhhhhhCcCC
Confidence 599999999999999999874
No 31
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=38.86 E-value=17 Score=22.74 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=17.8
Q ss_pred eecccCCcccCCCCccCccCCc
Q 017054 81 KYCDTCMHYRPPRCSHCSICNN 102 (378)
Q Consensus 81 k~C~tC~i~rPpRs~HC~~C~~ 102 (378)
|.|+.|....|.-++-|..||.
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 4688888888888888888874
No 32
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=38.17 E-value=2.1e+02 Score=23.04 Aligned_cols=17 Identities=6% Similarity=0.164 Sum_probs=11.1
Q ss_pred ccchHHHHHHHHHHHHH
Q 017054 120 LRNYRFFFMFVFSTTLL 136 (378)
Q Consensus 120 ~rN~r~F~lFL~~~~l~ 136 (378)
.+|-|.|++-+...++.
T Consensus 9 ~~~~kkFl~~l~~vfii 25 (85)
T PF10749_consen 9 TKEGKKFLLALAIVFII 25 (85)
T ss_pred ChhhhHHHHHHHHHHHH
Confidence 46788887766554443
No 33
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=37.67 E-value=1.8e+02 Score=25.46 Aligned_cols=18 Identities=33% Similarity=0.622 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017054 124 RFFFMFVFSTTLLCIYVH 141 (378)
Q Consensus 124 r~F~lFL~~~~l~~i~~~ 141 (378)
+++.++|++.+++++|+.
T Consensus 22 ~~~~~~l~~~~~~~~y~~ 39 (130)
T PF10864_consen 22 FWQWLFLFSLFLFFIYFY 39 (130)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666666665544
No 34
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=37.46 E-value=2.3e+02 Score=29.42 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=18.6
Q ss_pred eecccCCccc------CCCCccCccCCcccccCCc
Q 017054 81 KYCDTCMHYR------PPRCSHCSICNNCVQKFDH 109 (378)
Q Consensus 81 k~C~tC~i~r------PpRs~HC~~C~~CV~rfDH 109 (378)
.-|+.|...- |...-+|..|+.-..+.++
T Consensus 11 ~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~ 45 (419)
T PRK15103 11 ILCPQCDMLVALPRLEHGQKAACPRCGTTLTVRWD 45 (419)
T ss_pred ccCCCCCceeecCCCCCCCeeECCCCCCCCcCCCC
Confidence 3499997532 2345678888887766544
No 35
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=34.76 E-value=19 Score=26.90 Aligned_cols=35 Identities=31% Similarity=0.972 Sum_probs=26.5
Q ss_pred cccCCcccCCCC-------ccCccCCcccccC-CccCccccccccc
Q 017054 83 CDTCMHYRPPRC-------SHCSICNNCVQKF-DHHCPWVGQCIGL 120 (378)
Q Consensus 83 C~tC~i~rPpRs-------~HC~~C~~CV~rf-DHHCpWvgnCIG~ 120 (378)
|..|..--|+-+ +-|..|..|++.+ +++|| ||=|.
T Consensus 8 CE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 8 CECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred ccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 666666666654 6789999999987 99998 66554
No 36
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=33.84 E-value=1.6e+02 Score=29.14 Aligned_cols=133 Identities=20% Similarity=0.394 Sum_probs=75.3
Q ss_pred eeeecccCCcccCCCCccCccCCcccccCCccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhh--------
Q 017054 79 KIKYCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFSTTLLCIYVHAFCWIRIRK-------- 150 (378)
Q Consensus 79 ~~k~C~tC~i~rPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rN~r~F~lFL~~~~l~~i~~~~~~~~~i~~-------- 150 (378)
+...|++|+.=.-.=-|||..=|+||--..| |=.-.|+.++--++.++.+.....|.-+..
T Consensus 115 rTHHCsiC~kCVL~MDHHCPwinnCVG~~NH-----------ryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~tay 183 (309)
T KOG1313|consen 115 RTHHCSICNKCVLKMDHHCPWINNCVGAHNH-----------RYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEITAY 183 (309)
T ss_pred CcchhhHHhhHhhccccCCchhhcccccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhcccc
Confidence 3456888876666667999999999998776 556778888877666666654443332210
Q ss_pred -------------hccCCc------hhhhhhhhcCchhHHHHHHHHHHHH-----HHHHHHHHHHHHHhhcccchhhhhc
Q 017054 151 -------------IMNGEN------VSIWKAMTKSPASIALIIYTFISVW-----FVGGLTVFHSYLISRNQSTYENFRN 206 (378)
Q Consensus 151 -------------~~~~~~------~~~~~~~~~~~~~i~l~i~~~l~~~-----~v~~L~~~hlylI~~N~TT~E~~r~ 206 (378)
...... ...|-. ...++++...+.+| .+|....-++.++...+++.-..|
T Consensus 184 ~~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fl-----s~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~R- 257 (309)
T KOG1313|consen 184 ASDVAHVAPPPSILRVYKNITRTSIANLWFL-----SVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAHLR- 257 (309)
T ss_pred cCcccccCCChhhhhhhhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHhcc-
Confidence 000111 112211 11122222222222 234455556666666666654444
Q ss_pred ccCCCCCCCCHHHHHHHHHhcCCC
Q 017054 207 RYDEHVNPYNKGVIKNFMEVFCTS 230 (378)
Q Consensus 207 r~~~~~nPyd~G~~~N~~evfg~~ 230 (378)
.+..|-=-+-=|+|+..++..+
T Consensus 258 --~~~~n~g~k~nWr~fLg~~~~r 279 (309)
T KOG1313|consen 258 --SNPTNFGGKANWRNFLGLFRGR 279 (309)
T ss_pred --CCCcccchHHHHHHhhccccCC
Confidence 2344444555689999999888
No 37
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=32.16 E-value=23 Score=28.79 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=10.1
Q ss_pred cCCccCcccccccc
Q 017054 106 KFDHHCPWVGQCIG 119 (378)
Q Consensus 106 rfDHHCpWvgnCIG 119 (378)
.+-.||||++.-..
T Consensus 53 eHr~~CPwv~~~~q 66 (91)
T PF08600_consen 53 EHREYCPWVNPSTQ 66 (91)
T ss_pred cccccCCccCCccc
Confidence 34478999997653
No 38
>PF14127 DUF4294: Domain of unknown function (DUF4294)
Probab=31.36 E-value=34 Score=30.88 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=30.9
Q ss_pred hhcccchhhhhcccCCCCCCCCHHHHHHHHHhcCCCCCCCc
Q 017054 195 SRNQSTYENFRNRYDEHVNPYNKGVIKNFMEVFCTSIPTSK 235 (378)
Q Consensus 195 ~~N~TT~E~~r~r~~~~~nPyd~G~~~N~~evfg~~~~ps~ 235 (378)
-+|+|++|.+|. -.+++.-++|+.+..+||.+....+
T Consensus 103 etg~TsyelIK~----~rgg~~A~~~q~~A~~Fg~sLK~~Y 139 (157)
T PF14127_consen 103 ETGSTSYELIKE----LRGGWRAFWYQTFAWLFGISLKKEY 139 (157)
T ss_pred hcCCcHHHHHHH----hhCChhHHHHHHHHHHhCcccccCC
Confidence 489999999873 5688999999999999998865444
No 39
>PF12773 DZR: Double zinc ribbon
Probab=30.81 E-value=29 Score=24.38 Aligned_cols=23 Identities=30% Similarity=0.777 Sum_probs=20.8
Q ss_pred eeeecccCCcccCCCCccCccCC
Q 017054 79 KIKYCDTCMHYRPPRCSHCSICN 101 (378)
Q Consensus 79 ~~k~C~tC~i~rPpRs~HC~~C~ 101 (378)
..++|..|....++.+.+|..|+
T Consensus 28 ~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 28 SKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCCCcCCcCCCcCCcCccCccc
Confidence 46799999999999999999886
No 40
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=30.68 E-value=15 Score=27.63 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=12.1
Q ss_pred eeecccCCccc--CCCCccCccCCcccc
Q 017054 80 IKYCDTCMHYR--PPRCSHCSICNNCVQ 105 (378)
Q Consensus 80 ~k~C~tC~i~r--PpRs~HC~~C~~CV~ 105 (378)
...|..|...= --|-|||+.||..|=
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC 36 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVC 36 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEEC
Confidence 45677775433 368999999998553
No 41
>PHA02898 virion envelope protein; Provisional
Probab=29.57 E-value=2.2e+02 Score=23.30 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHH-Hhhcccchhhhhc
Q 017054 182 FVGGLTVFHSYL-ISRNQSTYENFRN 206 (378)
Q Consensus 182 ~v~~L~~~hlyl-I~~N~TT~E~~r~ 206 (378)
.+.++++|-.|- -++..++.|.-|+
T Consensus 58 l~lG~~ifs~y~r~C~~~~~~e~~ry 83 (92)
T PHA02898 58 LILGIIFFKGYNMFCGGNTTDEVSRY 83 (92)
T ss_pred HHHHHHHHHHHhhhcCCCccccccee
Confidence 345667777776 5667777775544
No 42
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=29.09 E-value=6.5e+02 Score=25.89 Aligned_cols=100 Identities=17% Similarity=0.254 Sum_probs=63.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHH--ccCCcccCCCCCCCCccCCCCCCCCCCCCCCcCCCCcceeEecceEeeee
Q 017054 4 FPHHLGISIMVIVIALTLFALILLLLTS--GRDPGVIARNANPPELEGYEGTEVGPGQTPQLCLPRTKDVVVNGVVVKIK 81 (378)
Q Consensus 4 f~~~~g~~i~vi~~vl~i~~li~l~~ts--~~DPGiiPr~~~~~~~e~~~~~e~~~g~~p~~~~p~~k~v~vng~~~~~k 81 (378)
|-.....+.+++...++++.++.-+++- +.-||.=|.+.....-..+=. .-..+..| +..
T Consensus 45 ~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D~~~lqfCk------~CqgYKap------------RSH 106 (414)
T KOG1314|consen 45 FLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKDEMFLQFCK------KCQGYKAP------------RSH 106 (414)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHh------hccCcCCC------------ccc
Confidence 3355667788888888888887766655 678899887654311110000 00012223 346
Q ss_pred ecccCCcccCCCCccCccCCcccccCCccCccccccccccchHHHHHHHHH
Q 017054 82 YCDTCMHYRPPRCSHCSICNNCVQKFDHHCPWVGQCIGLRNYRFFFMFVFS 132 (378)
Q Consensus 82 ~C~tC~i~rPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rN~r~F~lFL~~ 132 (378)
.|.+|+.=.-.=-|||.--|+||---.| .-.-+|++|...
T Consensus 107 HCrkCnrCvmkMDHHCPWinnCVG~aNh-----------~~F~~FLlf~iv 146 (414)
T KOG1314|consen 107 HCRKCNRCVMKMDHHCPWINNCVGWANH-----------AYFLRFLLFSIV 146 (414)
T ss_pred cchHHHHHHHhhccCCcchhhccccccc-----------HHHHHHHHHHHH
Confidence 7888887666667999999999975444 235778888766
No 43
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=26.10 E-value=25 Score=22.27 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=8.7
Q ss_pred ecccCCcccCC-CCccCccCCc
Q 017054 82 YCDTCMHYRPP-RCSHCSICNN 102 (378)
Q Consensus 82 ~C~tC~i~rPp-Rs~HC~~C~~ 102 (378)
.|..|+..... ...+|..|+-
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf 23 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDF 23 (30)
T ss_dssp --TTTS----S--EEE-TTT--
T ss_pred cCCcCCCcCCCCceEECccCCC
Confidence 57777777766 7788888864
No 44
>PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment []. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface []. ; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3LC8_A 3LBS_A.
Probab=25.62 E-value=24 Score=29.31 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=1.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHccCCcc
Q 017054 3 NFPHHLGISIMVIVIALTLFALILLLLTSGRDPGV 37 (378)
Q Consensus 3 ~f~~~~g~~i~vi~~vl~i~~li~l~~ts~~DPGi 37 (378)
+||.-+.+.+.+..++...+..+.+.+. -.|||.
T Consensus 50 dypviFnIiLW~~v~l~~all~i~~~m~-~mDPGr 83 (98)
T PF07850_consen 50 DYPVIFNIILWFSVVLALALLAICYAMW-NMDPGR 83 (98)
T ss_dssp ---------------------------------TT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhe-ecCCCC
Confidence 4555555444444443333334444444 489993
No 45
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=23.12 E-value=62 Score=24.40 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=16.9
Q ss_pred eeecccCCcccCCCCccCc-cCCc
Q 017054 80 IKYCDTCMHYRPPRCSHCS-ICNN 102 (378)
Q Consensus 80 ~k~C~tC~i~rPpRs~HC~-~C~~ 102 (378)
.|.|..|...-|+--..|| .|+.
T Consensus 3 HkHC~~CG~~Ip~~~~fCS~~C~~ 26 (59)
T PF09889_consen 3 HKHCPVCGKPIPPDESFCSPKCRE 26 (59)
T ss_pred CCcCCcCCCcCCcchhhhCHHHHH
Confidence 4678888888888877775 5554
No 46
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=20.31 E-value=35 Score=30.02 Aligned_cols=22 Identities=23% Similarity=0.626 Sum_probs=15.9
Q ss_pred cccCCcccCCCCccCccCCcccccC
Q 017054 83 CDTCMHYRPPRCSHCSICNNCVQKF 107 (378)
Q Consensus 83 C~tC~i~rPpRs~HC~~C~~CV~rf 107 (378)
..+|... ...||..|..|++|.
T Consensus 143 s~sC~~~---~~~~CG~C~~C~~r~ 164 (169)
T cd01995 143 TWSCYNG---GEKHCGECDSCLLRK 164 (169)
T ss_pred eeeccCC---CCCCCCCCHHHHHHH
Confidence 4455544 238999999999874
Done!