Query 017054
Match_columns 378
No_of_seqs 313 out of 1790
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 08:10:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 70.1 2 6.7E-05 36.9 2.1 45 74-118 77-125 (143)
2 2ayj_A 50S ribosomal protein L 69.4 2.5 8.6E-05 30.4 2.2 28 79-106 18-45 (56)
3 3j21_g 50S ribosomal protein L 60.9 5.1 0.00017 28.3 2.4 28 79-106 13-40 (51)
4 1joc_A EEA1, early endosomal a 42.8 9.6 0.00033 31.5 1.7 25 80-104 69-95 (125)
5 1wfk_A Zinc finger, FYVE domai 42.1 8.7 0.0003 29.8 1.2 25 80-104 9-35 (88)
6 1dvp_A HRS, hepatocyte growth 39.7 11 0.00038 33.9 1.7 24 81-104 162-187 (220)
7 1vfy_A Phosphatidylinositol-3- 37.3 9.7 0.00033 28.3 0.8 23 82-104 13-37 (73)
8 1x4u_A Zinc finger, FYVE domai 35.7 11 0.00037 28.8 0.8 23 81-103 15-39 (84)
9 3zyq_A Hepatocyte growth facto 35.5 13 0.00046 33.6 1.6 24 81-104 165-190 (226)
10 3u5e_m 60S ribosomal protein L 33.7 20 0.00067 29.3 2.2 25 79-103 92-118 (128)
11 2yw8_A RUN and FYVE domain-con 33.4 12 0.00041 28.4 0.8 25 80-104 19-45 (82)
12 1z2q_A LM5-1; membrane protein 33.1 12 0.00042 28.5 0.8 25 80-104 21-47 (84)
13 3t7l_A Zinc finger FYVE domain 25.4 20 0.00069 27.7 0.8 25 80-104 20-46 (90)
14 1y02_A CARP2, FYVE-ring finger 24.0 19 0.00066 29.7 0.4 23 81-103 20-44 (120)
15 2cr8_A MDM4 protein; ZF-ranbp 22.3 39 0.0013 23.8 1.7 22 81-102 12-33 (53)
16 2pg3_A Queuosine biosynthesis 21.8 22 0.00075 31.6 0.4 19 89-107 190-208 (232)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=70.08 E-value=2 Score=36.87 Aligned_cols=45 Identities=22% Similarity=0.528 Sum_probs=28.1
Q ss_pred cceEeeeeecccCCcccCCC-CccCccCCccccc---CCccCccccccc
Q 017054 74 NGVVVKIKYCDTCMHYRPPR-CSHCSICNNCVQK---FDHHCPWVGQCI 118 (378)
Q Consensus 74 ng~~~~~k~C~tC~i~rPpR-s~HC~~C~~CV~r---fDHHCpWvgnCI 118 (378)
.|..+...||..|++|-+.+ .+||..||-|-.. -=-||.=-|-|+
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~ 125 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCL 125 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeee
Confidence 45667778999999996553 3666666666553 113455445453
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=69.38 E-value=2.5 Score=30.44 Aligned_cols=28 Identities=25% Similarity=0.594 Sum_probs=24.1
Q ss_pred eeeecccCCcccCCCCccCccCCccccc
Q 017054 79 KIKYCDTCMHYRPPRCSHCSICNNCVQK 106 (378)
Q Consensus 79 ~~k~C~tC~i~rPpRs~HC~~C~~CV~r 106 (378)
..+.|..|...-|+|+..|+.|+..-+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 4678999999999999999999865444
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.90 E-value=5.1 Score=28.31 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.3
Q ss_pred eeeecccCCcccCCCCccCccCCccccc
Q 017054 79 KIKYCDTCMHYRPPRCSHCSICNNCVQK 106 (378)
Q Consensus 79 ~~k~C~tC~i~rPpRs~HC~~C~~CV~r 106 (378)
..+.|..|...-|+++..|+.|+.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 5678999999999999999999876444
No 4
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=42.84 E-value=9.6 Score=31.53 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=17.4
Q ss_pred eeecccCCcc--cCCCCccCccCCccc
Q 017054 80 IKYCDTCMHY--RPPRCSHCSICNNCV 104 (378)
Q Consensus 80 ~k~C~tC~i~--rPpRs~HC~~C~~CV 104 (378)
...|..|... --.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 3468778653 235889999998743
No 5
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=42.14 E-value=8.7 Score=29.84 Aligned_cols=25 Identities=16% Similarity=0.285 Sum_probs=17.6
Q ss_pred eeecccCCcc--cCCCCccCccCCccc
Q 017054 80 IKYCDTCMHY--RPPRCSHCSICNNCV 104 (378)
Q Consensus 80 ~k~C~tC~i~--rPpRs~HC~~C~~CV 104 (378)
...|..|... --.|-|||+.|++-+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEE
Confidence 4568888653 235889999998743
No 6
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.73 E-value=11 Score=33.89 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=17.6
Q ss_pred eecccCCcc--cCCCCccCccCCccc
Q 017054 81 KYCDTCMHY--RPPRCSHCSICNNCV 104 (378)
Q Consensus 81 k~C~tC~i~--rPpRs~HC~~C~~CV 104 (378)
+.|..|... ---|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 578888653 235899999998744
No 7
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=37.29 E-value=9.7 Score=28.34 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=16.5
Q ss_pred ecccCCcc--cCCCCccCccCCccc
Q 017054 82 YCDTCMHY--RPPRCSHCSICNNCV 104 (378)
Q Consensus 82 ~C~tC~i~--rPpRs~HC~~C~~CV 104 (378)
.|..|... .--|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 57777653 234899999998743
No 8
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.69 E-value=11 Score=28.83 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=16.5
Q ss_pred eecccCCcc--cCCCCccCccCCcc
Q 017054 81 KYCDTCMHY--RPPRCSHCSICNNC 103 (378)
Q Consensus 81 k~C~tC~i~--rPpRs~HC~~C~~C 103 (378)
..|..|... ---|-|||+.|++-
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcE
Confidence 457777553 34689999999873
No 9
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=35.45 E-value=13 Score=33.62 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=16.7
Q ss_pred eecccCCccc--CCCCccCccCCccc
Q 017054 81 KYCDTCMHYR--PPRCSHCSICNNCV 104 (378)
Q Consensus 81 k~C~tC~i~r--PpRs~HC~~C~~CV 104 (378)
..|..|...= --|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 4688886422 23789999998743
No 10
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=33.68 E-value=20 Score=29.29 Aligned_cols=25 Identities=28% Similarity=0.801 Sum_probs=21.7
Q ss_pred eeeecccCCcccCCCCccCcc--CCcc
Q 017054 79 KIKYCDTCMHYRPPRCSHCSI--CNNC 103 (378)
Q Consensus 79 ~~k~C~tC~i~rPpRs~HC~~--C~~C 103 (378)
..+.|..|...-|+|+..|+. |+..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 358999999999999999995 8764
No 11
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=33.39 E-value=12 Score=28.44 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=17.5
Q ss_pred eeecccCCccc--CCCCccCccCCccc
Q 017054 80 IKYCDTCMHYR--PPRCSHCSICNNCV 104 (378)
Q Consensus 80 ~k~C~tC~i~r--PpRs~HC~~C~~CV 104 (378)
...|..|...= --|-|||+.||+-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 35688886532 35899999998743
No 12
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=33.11 E-value=12 Score=28.54 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=17.6
Q ss_pred eeecccCCccc--CCCCccCccCCccc
Q 017054 80 IKYCDTCMHYR--PPRCSHCSICNNCV 104 (378)
Q Consensus 80 ~k~C~tC~i~r--PpRs~HC~~C~~CV 104 (378)
...|..|...= --|-|||+.|++-+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccchhcccccCCCcEE
Confidence 45688886532 35899999998743
No 13
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=25.37 E-value=20 Score=27.74 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=17.4
Q ss_pred eeecccCCccc--CCCCccCccCCccc
Q 017054 80 IKYCDTCMHYR--PPRCSHCSICNNCV 104 (378)
Q Consensus 80 ~k~C~tC~i~r--PpRs~HC~~C~~CV 104 (378)
...|..|...= -.|-|||+.|+.-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 35688886422 34889999998743
No 14
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=24.04 E-value=19 Score=29.67 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=16.3
Q ss_pred eecccCCcc--cCCCCccCccCCcc
Q 017054 81 KYCDTCMHY--RPPRCSHCSICNNC 103 (378)
Q Consensus 81 k~C~tC~i~--rPpRs~HC~~C~~C 103 (378)
..|..|... --.|-|||+.||+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 457777542 24589999999874
No 15
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=22.30 E-value=39 Score=23.78 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=16.9
Q ss_pred eecccCCcccCCCCccCccCCc
Q 017054 81 KYCDTCMHYRPPRCSHCSICNN 102 (378)
Q Consensus 81 k~C~tC~i~rPpRs~HC~~C~~ 102 (378)
-.|..|+..-||=..||..|=.
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTCC
T ss_pred eecccccccCCCccchhHHHHH
Confidence 3588888888888888877643
No 16
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=21.83 E-value=22 Score=31.61 Aligned_cols=19 Identities=21% Similarity=0.578 Sum_probs=15.0
Q ss_pred ccCCCCccCccCCcccccC
Q 017054 89 YRPPRCSHCSICNNCVQKF 107 (378)
Q Consensus 89 ~rPpRs~HC~~C~~CV~rf 107 (378)
+.+.|..||..|..|++|.
T Consensus 190 ~~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 190 YNGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TTSCCTTTTSCSHHHHHHH
T ss_pred cCCCCCCcCCcCHhHHHHH
Confidence 3555668999999999874
Done!