Query 017057
Match_columns 378
No_of_seqs 126 out of 165
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2417 Predicted G-protein co 100.0 1E-107 3E-112 787.0 26.0 353 4-357 3-355 (462)
2 PF12537 DUF3735: Protein of u 99.9 3.6E-26 7.9E-31 179.1 3.9 71 141-211 1-72 (72)
3 PF12430 ABA_GPCR: Abscisic ac 99.8 3.8E-20 8.1E-25 171.2 7.3 76 282-357 1-91 (196)
4 PF04791 LMBR1: LMBR1-like mem 96.8 0.23 4.9E-06 51.6 21.6 132 45-180 36-192 (471)
5 PRK11546 zraP zinc resistance 91.9 1.4 3.1E-05 39.1 9.4 35 247-284 85-119 (143)
6 PF11712 Vma12: Endoplasmic re 81.5 5.2 0.00011 35.1 6.7 49 12-64 84-132 (142)
7 KOG2019 Metalloendoprotease HM 77.0 9.2 0.0002 42.2 7.9 107 163-276 353-478 (998)
8 PF01920 Prefoldin_2: Prefoldi 66.1 60 0.0013 26.1 9.0 34 249-282 67-100 (106)
9 KOG0709 CREB/ATF family transc 64.7 41 0.00089 35.4 9.2 50 254-303 289-338 (472)
10 KOG3231 Predicted assembly/vac 63.8 54 0.0012 30.1 8.6 38 179-216 3-40 (208)
11 TIGR00985 3a0801s04tom mitocho 63.4 5.3 0.00011 35.8 2.2 32 287-328 5-36 (148)
12 PF05082 Rop-like: Rop-like; 58.8 22 0.00047 27.6 4.6 51 251-310 2-52 (66)
13 PRK11637 AmiB activator; Provi 55.6 1.3E+02 0.0028 31.0 11.2 31 186-216 46-76 (428)
14 KOG0250 DNA repair protein RAD 55.3 1.1E+02 0.0024 35.5 11.1 39 248-286 398-436 (1074)
15 PRK09039 hypothetical protein; 53.4 1.4E+02 0.0029 30.3 10.6 34 251-284 151-184 (343)
16 PF04156 IncA: IncA protein; 51.7 1.6E+02 0.0035 26.5 10.0 18 188-205 82-99 (191)
17 PRK10803 tol-pal system protei 51.5 1.6E+02 0.0035 28.5 10.5 28 252-279 76-103 (263)
18 PRK09343 prefoldin subunit bet 51.4 1E+02 0.0022 26.4 8.1 58 230-287 53-114 (121)
19 COG1579 Zn-ribbon protein, pos 50.9 2.1E+02 0.0045 27.7 10.9 92 187-284 31-122 (239)
20 COG3074 Uncharacterized protei 48.7 53 0.0011 25.9 5.2 31 251-281 18-48 (79)
21 PF10805 DUF2730: Protein of u 46.5 1.7E+02 0.0037 24.4 9.0 30 182-218 30-59 (106)
22 KOG3599 Ca2+-modulated nonsele 43.6 5.4E+02 0.012 29.3 21.3 103 5-107 500-618 (798)
23 PF08317 Spc7: Spc7 kinetochor 42.4 2.2E+02 0.0048 28.4 10.1 20 85-104 59-78 (325)
24 PF05508 Ran-binding: RanGTP-b 42.1 1.4E+02 0.003 29.9 8.3 52 146-198 1-56 (302)
25 PF07106 TBPIP: Tat binding pr 40.7 2.6E+02 0.0057 24.8 10.3 24 247-270 112-135 (169)
26 PF11932 DUF3450: Protein of u 40.4 3.3E+02 0.0072 25.9 11.4 36 249-284 82-117 (251)
27 PF04111 APG6: Autophagy prote 40.2 3.6E+02 0.0078 26.9 11.2 28 251-278 78-105 (314)
28 PF14077 WD40_alt: Alternative 40.1 35 0.00077 24.6 2.9 25 248-272 15-39 (48)
29 PRK11637 AmiB activator; Provi 38.8 2.3E+02 0.0049 29.2 9.9 24 254-277 187-210 (428)
30 PF06005 DUF904: Protein of un 38.2 1.4E+02 0.0029 23.5 6.2 28 251-278 18-45 (72)
31 PRK06231 F0F1 ATP synthase sub 38.0 3.4E+02 0.0073 25.3 14.6 32 186-217 85-116 (205)
32 PF09726 Macoilin: Transmembra 37.4 3.4E+02 0.0073 30.3 11.4 55 2-62 36-90 (697)
33 PF02064 MAS20: MAS20 protein 37.4 11 0.00024 32.6 0.0 22 297-328 5-26 (121)
34 KOG4056 Translocase of outer m 37.3 22 0.00047 31.6 1.8 27 293-329 13-39 (143)
35 TIGR02338 gimC_beta prefoldin, 36.9 2.5E+02 0.0053 23.4 11.0 54 230-283 49-106 (110)
36 PF14723 SSFA2_C: Sperm-specif 36.5 3.4E+02 0.0073 25.1 9.3 27 257-283 144-170 (179)
37 COG4942 Membrane-bound metallo 36.4 3.3E+02 0.0072 28.5 10.4 28 251-278 161-188 (420)
38 PF14389 Lzipper-MIP1: Leucine 36.0 2.3E+02 0.0051 22.8 7.8 28 248-275 58-85 (88)
39 TIGR03545 conserved hypothetic 35.1 1.8E+02 0.004 31.5 8.7 35 250-284 218-256 (555)
40 COG4942 Membrane-bound metallo 34.8 3.9E+02 0.0086 28.0 10.7 20 194-213 38-57 (420)
41 PF00170 bZIP_1: bZIP transcri 34.3 1.4E+02 0.0029 22.3 5.6 35 250-284 25-59 (64)
42 KOG0971 Microtubule-associated 34.1 2.8E+02 0.0061 32.0 9.9 37 252-288 1093-1129(1243)
43 PF05600 DUF773: Protein of un 33.7 1.5E+02 0.0032 31.8 7.7 50 249-299 458-507 (507)
44 KOG2577 Transcription factor E 33.4 90 0.0019 31.9 5.6 37 249-285 142-178 (354)
45 PF08232 Striatin: Striatin fa 33.0 1E+02 0.0022 26.9 5.4 42 250-291 31-74 (134)
46 PF14854 LURAP: Leucine rich a 32.9 1.4E+02 0.0031 25.7 6.0 40 247-286 18-57 (121)
47 COG1382 GimC Prefoldin, chaper 32.4 3.3E+02 0.0072 23.5 9.0 39 248-286 74-112 (119)
48 PRK15422 septal ring assembly 31.0 1.9E+02 0.0042 23.2 6.1 27 250-276 17-43 (79)
49 COG1480 Predicted membrane-ass 30.0 6.9E+02 0.015 27.9 11.9 38 25-62 290-327 (700)
50 PF01486 K-box: K-box region; 29.5 3E+02 0.0064 22.4 7.3 24 186-209 48-71 (100)
51 PF02646 RmuC: RmuC family; I 29.5 2.2E+02 0.0048 28.1 7.7 63 251-314 31-99 (304)
52 PF12507 HCMV_UL139: Human Cyt 29.1 50 0.0011 28.6 2.6 45 253-297 46-90 (121)
53 PF15190 DUF4583: Domain of un 28.8 2.8E+02 0.006 24.2 7.1 46 81-129 64-110 (128)
54 COG3763 Uncharacterized protei 28.1 1.1E+02 0.0023 24.2 4.0 29 11-40 8-36 (71)
55 PRK10884 SH3 domain-containing 27.3 5.3E+02 0.011 24.2 11.5 91 186-304 99-189 (206)
56 PF05377 FlaC_arch: Flagella a 26.3 2.1E+02 0.0045 21.5 5.1 33 253-285 2-34 (55)
57 KOG1691 emp24/gp25L/p24 family 25.9 2.2E+02 0.0047 27.0 6.5 39 248-286 131-169 (210)
58 PRK10869 recombination and rep 25.8 3.7E+02 0.008 29.0 9.2 30 250-279 340-369 (553)
59 PRK08475 F0F1 ATP synthase sub 25.8 4.9E+02 0.011 23.3 9.3 30 187-216 60-89 (167)
60 PRK15396 murein lipoprotein; P 25.5 2.5E+02 0.0055 22.4 5.9 30 187-216 32-61 (78)
61 PF12325 TMF_TATA_bd: TATA ele 25.3 2.2E+02 0.0047 24.6 5.9 37 248-284 27-63 (120)
62 PF04799 Fzo_mitofusin: fzo-li 25.2 2E+02 0.0043 26.4 5.9 37 248-284 124-163 (171)
63 KOG0994 Extracellular matrix g 25.1 4.1E+02 0.0088 31.7 9.4 29 251-279 1267-1295(1758)
64 PF13314 DUF4083: Domain of un 25.0 67 0.0015 24.3 2.3 45 148-203 5-55 (58)
65 PF11932 DUF3450: Protein of u 24.5 6.1E+02 0.013 24.0 10.7 21 330-350 153-173 (251)
66 PF06570 DUF1129: Protein of u 24.1 5.7E+02 0.012 23.5 13.7 32 69-100 138-169 (206)
67 PRK15422 septal ring assembly 23.9 3.9E+02 0.0084 21.5 8.4 27 189-215 6-32 (79)
68 smart00338 BRLZ basic region l 23.8 2.5E+02 0.0054 20.9 5.4 33 251-283 26-58 (65)
69 PF08317 Spc7: Spc7 kinetochor 23.6 7.3E+02 0.016 24.6 10.5 31 252-282 238-268 (325)
70 PF06600 DUF1140: Protein of u 23.3 4.5E+02 0.0098 22.1 7.1 24 198-221 20-43 (107)
71 TIGR00437 feoB ferrous iron tr 23.3 2.4E+02 0.0052 30.7 7.2 27 144-170 341-367 (591)
72 PRK09973 putative outer membra 23.3 2.9E+02 0.0063 22.5 5.9 30 187-216 31-60 (85)
73 PRK09039 hypothetical protein; 22.8 7.9E+02 0.017 24.7 10.5 49 250-298 136-185 (343)
74 PRK10361 DNA recombination pro 22.4 5.2E+02 0.011 27.6 9.2 60 250-309 164-226 (475)
75 KOG1440 CDP-diacylglycerol syn 22.0 9.4E+02 0.02 25.3 12.2 117 48-177 165-291 (432)
76 KOG0483 Transcription factor H 21.8 2.5E+02 0.0054 26.3 6.1 89 181-285 54-146 (198)
77 PF09323 DUF1980: Domain of un 21.7 2.8E+02 0.006 25.1 6.3 19 54-72 39-57 (182)
78 PF08657 DASH_Spc34: DASH comp 21.1 5.5E+02 0.012 25.0 8.5 32 187-218 180-211 (259)
79 cd00632 Prefoldin_beta Prefold 20.8 4.7E+02 0.01 21.4 10.8 53 231-283 46-102 (105)
80 PF07438 DUF1514: Protein of u 20.7 3E+02 0.0066 21.3 5.2 23 254-276 21-43 (66)
81 smart00787 Spc7 Spc7 kinetocho 20.5 8.5E+02 0.018 24.3 9.9 32 187-218 204-235 (312)
82 PRK12907 secY preprotein trans 20.5 2.6E+02 0.0056 29.3 6.5 91 81-171 272-386 (434)
83 PRK12417 secY preprotein trans 20.1 2.6E+02 0.0057 28.9 6.4 90 81-170 240-357 (404)
84 COG1422 Predicted membrane pro 20.1 6.7E+02 0.015 23.7 8.4 12 156-167 48-59 (201)
85 COG1344 FlgL Flagellin and rel 20.1 2.6E+02 0.0056 28.2 6.3 37 245-295 99-135 (360)
No 1
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-107 Score=787.03 Aligned_cols=353 Identities=51% Similarity=0.847 Sum_probs=330.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhHHhHH
Q 017057 4 GIAIYEGTVVTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPILSKEARVVNWKVDLF 83 (378)
Q Consensus 4 ~~~~~~~~~~~~s~~~~f~~g~~ff~~~l~~dY~v~~~~~~~lFS~tfalS~~lfeLILfEI~~~~~~~~R~~~W~~tL~ 83 (378)
+|...|+.++.+|+.+||.+||+|++|+|||+||+||+.+|++||+|||+||+|+|||+|||.|++++++|..+|+.++.
T Consensus 3 ~~~~~d~~vv~~Sl~lff~~gw~f~~k~lfk~ye~~~~~Vq~Ifs~tfa~sc~lfeliifeii~vl~~~sr~~~w~~~l~ 82 (462)
T KOG2417|consen 3 GWDIYDAWVVIGSLILFFAAGWLFYNKQLFKNYEVHNRVVQFIFSVTFAFSCSLFELIIFEIIDVLSPESRMFCWKVCLS 82 (462)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeehhHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHhHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHhCCcccCCCCCCCcceecchhheeehhhHHHHHH
Q 017057 84 CLILLLVFMLPYYHCYLMLCNSGVRKERAALGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAV 163 (378)
Q Consensus 84 ~Ll~lLivviP~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~FwkiG~~~p~~~~~~~~~~~e~~lsRIgViGVtlmAi 163 (378)
++++++++++|+|+||+++++.+++++++.++++.+|.+++|+|||+|||||+++++||++++||.++||||||||+||+
T Consensus 83 ~ill~lv~~ip~Y~~y~ii~~i~v~~k~~~~~s~l~w~~FlYffWkiGdpFPmlSakhGiftieQliSRvgVIGVTlMAv 162 (462)
T KOG2417|consen 83 LILLTLVFMIPYYHCYLIIRNIGVRRKLALPFTILFWFIFLYFFWKIGDPFPMLSAKHGIFTIEQLISRVGVIGVTLMAV 162 (462)
T ss_pred HHHHHHHHHHHHHhheeeeecccchHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCcccceeeHHHHHhhhhhhhhhHHHH
Confidence 99999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccchhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhccchhhhccccccc
Q 017057 164 LAGFGAVNLPYSYLSLFIREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRS 243 (378)
Q Consensus 164 LSGfGAVstPY~~~~~f~R~Vte~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s 243 (378)
||||||||+||+||++|.|||+|.||.++||||.||+||+++||||++.++-+ .++..+++.++.++++.|..+...++
T Consensus 163 LSGFGAVN~PYsyms~FiR~Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~-~~~l~~e~~~k~pSff~r~w~~~~~~ 241 (462)
T KOG2417|consen 163 LSGFGAVNAPYSYMSYFIRPVEETDIIQLERRLAQTMDMIISKKKKMAMAQLE-EKRLQSEKVQKEPSFFRRFWGMFSSS 241 (462)
T ss_pred HhccCccCCchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhcccCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988742 12222233455678777776532244
Q ss_pred cCcchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhhhHhhHHhhHHHHHHHHHHhhccCC
Q 017057 244 VQDDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAG 323 (378)
Q Consensus 244 ~~~~~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~FsiYCvyKI~~s~iniif~r~~ 323 (378)
.++++.+++|+.+|+|+++||+++||||+|+.||+++++|.++|||++|+++|++||+||+||||||+++++|++|||+|
T Consensus 242 ~~~~~~~~~i~~lq~EV~~LEeLsrqLFLE~~eLr~~ker~~~SkTfkG~yfN~LG~ffSiYCvwKif~s~inIvFdrvG 321 (462)
T KOG2417|consen 242 VQDNTLSSDIKLLQQEVEPLEELSRQLFLELVELRQMKERVAFSKTFKGKYFNVLGHFFSIYCVWKIFMSLINIVFDRVG 321 (462)
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhhhHhHHHHHHHHHHHHHHHHhhhcc
Confidence 46667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCccchHHHHhhhhhhhcc
Q 017057 324 SVDPVTMTISIFLQFFDIGINAQLLSQVSCQSWL 357 (378)
Q Consensus 324 ~~DPitr~L~i~~~~~~~~~Dv~~wsq~iSl~~~ 357 (378)
++||+||++++.++++|++.|+.+||||||++..
T Consensus 322 k~DPVTr~IeI~v~~~gi~~Dv~fwsQyISf~lV 355 (462)
T KOG2417|consen 322 KVDPVTRGIEITVNYLGIDFDVSFWSQYISFFLV 355 (462)
T ss_pred CcCCccceeEEEEEEecccchHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999864
No 2
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=99.92 E-value=3.6e-26 Score=179.08 Aligned_cols=71 Identities=51% Similarity=0.880 Sum_probs=68.3
Q ss_pred CCcceecchhheeehhhHHHHHHhhhccccccccchhhhhhcccC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 141 KGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREID-ESEIKALERQLMQSIETCIAKKKKII 211 (378)
Q Consensus 141 ~~~~~~e~~lsRIgViGVtlmAiLSGfGAVstPY~~~~~f~R~Vt-e~dI~~~e~~l~~t~~~l~~Kk~rl~ 211 (378)
||++++|++++||||+|||+||+|||||||||||++|++|.||++ |.||+++|++++||.|++.+||+|++
T Consensus 1 ~~~~~~~~~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~~v~~~~~i~~~~~~l~~t~~~l~~Kk~~l~ 72 (72)
T PF12537_consen 1 HGFFYIENVLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRRPVSRESDINNAERRLWHTRDMLVEKKKRLA 72 (72)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 577899999999999999999999999999999999999999999 99999999999999999999999874
No 3
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=99.81 E-value=3.8e-20 Score=171.21 Aligned_cols=76 Identities=39% Similarity=0.650 Sum_probs=72.5
Q ss_pred HHHhccCchHHHHHHHhhhHhhHHhhHHHHHHHHHHhhcc---------------CCCCChHHHHHHHHHHhcCccchHH
Q 017057 282 EAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKE---------------AGSVDPVTMTISIFLQFFDIGINAQ 346 (378)
Q Consensus 282 ~r~~~s~T~~Gr~~~~~g~~FsiYCvyKI~~s~iniif~r---------------~~~~DPitr~L~i~~~~~~~~~Dv~ 346 (378)
||+++++|++||+++++||+|++||+|||++|++|+++++ .+++||+|++++++++++|+++|++
T Consensus 1 ~r~~~s~T~~G~~~~~~g~~fsiYCvyki~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~Dpit~~l~~~~~~~~~~~d~~ 80 (196)
T PF12430_consen 1 ERQKRSSTLLGRLFNLLGYIFSIYCVYKIINTTLNIIFRRYSYSSSSPDDSSEASFSSSDPITRTLAILLSFFNIPIDVD 80 (196)
T ss_pred ChhhhCccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCHHHHHHHHHHHhCCCCCCHH
Confidence 5788999999999999999999999999999999999887 7899999999999999999999999
Q ss_pred HHhhhhhhhcc
Q 017057 347 LLSQVSCQSWL 357 (378)
Q Consensus 347 ~wsq~iSl~~~ 357 (378)
+|+||||+++.
T Consensus 81 ~~s~~ISf~L~ 91 (196)
T PF12430_consen 81 SWSRQISFLLS 91 (196)
T ss_pred HHHHHHHHHHH
Confidence 99999999863
No 4
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=96.84 E-value=0.23 Score=51.57 Aligned_cols=132 Identities=17% Similarity=0.313 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--------------ccccchhhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCCccch
Q 017057 45 IIFSVVFAFSCNLLQLVLFEIIP--------------ILSKEARVVNWKVDLFCLILLLVFMLPYYHCYLMLCNSGVRKE 110 (378)
Q Consensus 45 ~lFS~tfalS~~lfeLILfEI~~--------------~~~~~~R~~~W~~tL~~Ll~lLivviP~~i~~~l~~~~~~~~~ 110 (378)
..|+.+++++.++ |+=.+|.. ..+.+.-...|+..-....++.-+++||.+.|.=...+....+
T Consensus 36 ~~~~~~~~~~~vl--llP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~W~~iyw~~~il~w~ilPf~~~y~es~~~~~~~k 113 (471)
T PF04791_consen 36 VFLGLTLSFSIVL--LLPLDVANNEILSSYDSSYPGQWLNTSLMEVLWYIIYWLTFILTWLILPFAQFYYESGDFTPKGK 113 (471)
T ss_pred HHHHHHHHHHHHH--hcChhhhcccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Confidence 4445555555443 55556655 1122345557999999999999999999999987655422211
Q ss_pred ---hHH--------HHHHHHHHHHHHHHHHhCCcccCCCCCCCcceecchhheeehhhHHHHHHhhhccccccccchhhh
Q 017057 111 ---RAA--------LGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSL 179 (378)
Q Consensus 111 ---~~~--------~~~~~~~~~~l~~FwkiG~~~p~~~~~~~~~~~e~~lsRIgViGVtlmAiLSGfGAVstPY~~~~~ 179 (378)
++. +.+.+..+.++++...++..........++ ..=+++=....|..++.++-|+|=|.-|-.....
T Consensus 114 ~l~~~l~~n~~~~~~~~~i~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~ 191 (471)
T PF04791_consen 114 GLKSSLKENLIYYLIFAIIVGILLIYLLAILDYSESTLSSFSSL--LPFLIALSNFWGLFLFIILLGYGLVAIPRDLWRS 191 (471)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHh
Confidence 111 111111122222222211000000000011 1124555678999999999999999999987654
Q ss_pred h
Q 017057 180 F 180 (378)
Q Consensus 180 f 180 (378)
+
T Consensus 192 ~ 192 (471)
T PF04791_consen 192 S 192 (471)
T ss_pred c
Confidence 3
No 5
>PRK11546 zraP zinc resistance protein; Provisional
Probab=91.93 E-value=1.4 Score=39.08 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=24.4
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 247 DQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (378)
Q Consensus 247 ~~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~ 284 (378)
.++.+.|++|..||..|.. +|+.+=.+++.+.++.
T Consensus 85 ~pD~~kI~aL~kEI~~Lr~---kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 85 PPDSSKINAVAKEMENLRQ---SLDELRVKRDIAMAEA 119 (143)
T ss_pred CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 3456779999999985544 6666666666666654
No 6
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=81.54 E-value=5.2 Score=35.12 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 12 VVTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFE 64 (378)
Q Consensus 12 ~~~~s~~~~f~~g~~ff~~~l~~dY~v~~~~~~~lFS~tfalS~~lfeLILfE 64 (378)
=+++|.+..|++||++..... ..-+...++++|+.+|+-+...|++++=
T Consensus 84 Nilvsv~~~~~~~~~~~~~~~----~~~~~~~Rvllgl~~al~vlvAEv~l~~ 132 (142)
T PF11712_consen 84 NILVSVFAVFFAGWYWAGYSF----GGWSFPYRVLLGLFGALLVLVAEVVLYI 132 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999998777555 2234568899999999999999998874
No 7
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=76.96 E-value=9.2 Score=42.19 Aligned_cols=107 Identities=19% Similarity=0.343 Sum_probs=62.3
Q ss_pred Hhhhcc---ccccccch------hhhhhcccCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhcchhhhhhc
Q 017057 163 VLAGFG---AVNLPYSY------LSLFIREIDESEIKALERQLMQSIETCIAKK---KKIILCQMEMDRIQGSEEKLKAR 230 (378)
Q Consensus 163 iLSGfG---AVstPY~~------~~~f~R~Vte~dI~~~e~~l~~t~~~l~~Kk---~rl~~~~~~~~~~~~~~~~~~~~ 230 (378)
+=||.| +||+-|.- |+.=.+-|+|.||+..|.-.+.|.+.++.++ +|++..-.+++-+... ++.
T Consensus 353 iESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~----qst 428 (998)
T KOG2019|consen 353 IESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKH----QST 428 (998)
T ss_pred HHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhc----ccc
Confidence 348888 78887764 3334678999999999999999999988854 4555544444422211 111
Q ss_pred cchhhhccccccccCcc-------hhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 231 SFFKRIVGTVVRSVQDD-------QKEQDIKIMEAEVQALEELSKQLFLEIYE 276 (378)
Q Consensus 231 ~~~~~~~~~s~~s~~~~-------~~~~~i~~Lq~EI~~Le~l~~~L~~el~~ 276 (378)
++--.++.+....|..+ .-+++++++++.++ |+ +..+|.++.+
T Consensus 429 ~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~--ek-~~~lfq~lIk 478 (998)
T KOG2019|consen 429 GFGLSLMQSIISKWINDMDPFEPLKFEEQLKKLKQRLA--EK-SKKLFQPLIK 478 (998)
T ss_pred chhHHHHHHHhhhhccCCCccchhhhhhHHHHHHHHHh--hh-chhHHHHHHH
Confidence 22111111122223221 12467888888776 33 5666666654
No 8
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=66.10 E-value=60 Score=26.11 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=24.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (378)
Q Consensus 249 ~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~ 282 (378)
..+++..++.||..|+.-...+-.++.+++....
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777888777777777777777665443
No 9
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=64.74 E-value=41 Score=35.39 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhhhHhh
Q 017057 254 KIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALS 303 (378)
Q Consensus 254 ~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~Fs 303 (378)
++|+..+.-||.=.+.|+.+|++++..........|=.|+-..++.+-|+
T Consensus 289 qeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an~s~qt~tC~av~~lS~~ 338 (472)
T KOG0709|consen 289 QELQKKVEELELSNRSLLAQLKKLQTLVIQVANKSTQTSTCLAVLLLSFC 338 (472)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHH
Confidence 68999999999999999999999999888877777777776666665444
No 10
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.79 E-value=54 Score=30.06 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=21.3
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 179 LFIREIDESEIKALERQLMQSIETCIAKKKKIILCQME 216 (378)
Q Consensus 179 ~f~R~Vte~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 216 (378)
.|.+|-.+..+....+.|+.|...|..-|++++..|++
T Consensus 3 iF~Kktvke~~ren~ReLRkt~RdierdRr~me~~Ek~ 40 (208)
T KOG3231|consen 3 IFKKKTVKEVIRENNRELRKTQRDIERDRRAMEKQEKQ 40 (208)
T ss_pred cccCCCHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555333345556666777777766655555444433
No 11
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=63.43 E-value=5.3 Score=35.76 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=25.8
Q ss_pred cCchHHHHHHHhhhHhhHHhhHHHHHHHHHHhhccCCCCChH
Q 017057 287 SRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPV 328 (378)
Q Consensus 287 s~T~~Gr~~~~~g~~FsiYCvyKI~~s~iniif~r~~~~DPi 328 (378)
.+|..+-...+.+-+|.-|||| ||+...+||-
T Consensus 5 ~~~~~~~~ag~a~~~flgYciY----------FD~KRR~dPd 36 (148)
T TIGR00985 5 NKSNVVIAAGIAAAAFLGYAIY----------FDYKRRNDPD 36 (148)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh----------hhhhhccCHH
Confidence 4455555666778999999998 9999999997
No 12
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=58.85 E-value=22 Score=27.64 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhhhHhhHHhhHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKM 310 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~FsiYCvyKI 310 (378)
+++..|+.||.-|.....++-.|||+|-.. +...+-+++.+.=..|=+|+=
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEd---------LP~~w~~i~~vA~~ty~a~~~ 52 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAED---------LPTNWEEIPEVAQKTYDAYAE 52 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------TTTTGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------cchhHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998642 222223444555445555443
No 13
>PRK11637 AmiB activator; Provisional
Probab=55.65 E-value=1.3e+02 Score=31.04 Aligned_cols=31 Identities=3% Similarity=0.159 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 186 ESEIKALERQLMQSIETCIAKKKKIILCQME 216 (378)
Q Consensus 186 e~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 216 (378)
+.++.+.++++....+.+.+.++++...+.+
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~ 76 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ 76 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677766666665555544444444443
No 14
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=55.31 E-value=1.1e+02 Score=35.50 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=31.1
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017057 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 286 (378)
Q Consensus 248 ~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~ 286 (378)
..+.++.+|+.|+..+|+...+|-.++.++++...+.+.
T Consensus 398 e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e 436 (1074)
T KOG0250|consen 398 ERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEE 436 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345678999999999999999999999888865544443
No 15
>PRK09039 hypothetical protein; Validated
Probab=53.39 E-value=1.4e+02 Score=30.26 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~ 284 (378)
+++++++.+|+..|+-.++.-..+.+++.+.+.+
T Consensus 151 ~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 151 RQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555444433
No 16
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=51.72 E-value=1.6e+02 Score=26.53 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017057 188 EIKALERQLMQSIETCIA 205 (378)
Q Consensus 188 dI~~~e~~l~~t~~~l~~ 205 (378)
++...++++.+..+.+.+
T Consensus 82 e~~~~~~~l~~l~~el~~ 99 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQ 99 (191)
T ss_pred hHHhHHHHHHHHHHHHHH
Confidence 444444444444433333
No 17
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=51.46 E-value=1.6e+02 Score=28.51 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 252 DIKIMEAEVQALEELSKQLFLEIYELRQ 279 (378)
Q Consensus 252 ~i~~Lq~EI~~Le~l~~~L~~el~~L~~ 279 (378)
++.+++-|++.+.+=.+++|.|+.++..
T Consensus 76 ~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 76 QIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788889899999999999998654
No 18
>PRK09343 prefoldin subunit beta; Provisional
Probab=51.38 E-value=1e+02 Score=26.39 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=38.6
Q ss_pred ccchhhhccccccccC----cchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017057 230 RSFFKRIVGTVVRSVQ----DDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 287 (378)
Q Consensus 230 ~~~~~~~~~~s~~s~~----~~~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s 287 (378)
+.-+.+.+|..+-... .....+++..++.+|..||.=...+-..+.++++..++.-.+
T Consensus 53 d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 53 DTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred cchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566654442111 123346677888899999998888888999988877766544
No 19
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=50.89 E-value=2.1e+02 Score=27.71 Aligned_cols=92 Identities=16% Similarity=0.151 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhccchhhhccccccccCcchhhHhHHHHHHHHHHHHHH
Q 017057 187 SEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEEL 266 (378)
Q Consensus 187 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~i~~Lq~EI~~Le~l 266 (378)
.++..++..+....+.+.++..++..++.+..+....- .+-+....+.-. - .+...++.+.++|+.|+..++.=
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei--~~~r~r~~~~e~-k---l~~v~~~~e~~aL~~E~~~ak~r 104 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEI--QEIRERIKRAEE-K---LSAVKDERELRALNIEIQIAKER 104 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-H---HhccccHHHHHHHHHHHHHHHHH
Confidence 35666666667777777776666666665544321100 000000000000 0 01123345667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017057 267 SKQLFLEIYELRQAKEAA 284 (378)
Q Consensus 267 ~~~L~~el~~L~~~~~r~ 284 (378)
.++|-.|+.++..+++..
T Consensus 105 ~~~le~el~~l~~~~~~l 122 (239)
T COG1579 105 INSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777666554443
No 20
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.73 E-value=53 Score=25.85 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 281 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~ 281 (378)
+-|.-||+||+.|++=.++|-.|..+++..+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~r 48 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQR 48 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 4578899999999999999988888776543
No 21
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.51 E-value=1.7e+02 Score=24.36 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=19.9
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017057 182 REIDESEIKALERQLMQSIETCIAKKKKIILCQMEMD 218 (378)
Q Consensus 182 R~Vte~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 218 (378)
+.++.+|+...++++.+. .+|+...|.+++
T Consensus 30 ~~a~~~~~~~l~~~~~~~-------~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 30 TYAKREDIEKLEERLDEH-------DRRLQALETKLE 59 (106)
T ss_pred hhccHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 456778888877655543 357777776655
No 22
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=43.58 E-value=5.4e+02 Score=29.27 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=81.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHhhccccc--
Q 017057 5 IAIYEGTVVTGSLILLGWAGLWF-LNIRLYKEYEEKR----------ALVQIIFSVVFAFSCNLLQLVLFEIIPILSK-- 71 (378)
Q Consensus 5 ~~~~~~~~~~~s~~~~f~~g~~f-f~~~l~~dY~v~~----------~~~~~lFS~tfalS~~lfeLILfEI~~~~~~-- 71 (378)
|+.+|..|+++|.+...+..+.- +..+.-++++..+ .-...+|..+.|.-+-+.-+=+|....+-..
T Consensus 500 wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~ 579 (798)
T KOG3599|consen 500 WNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMS 579 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 67889999999999988888776 7777777777765 3456777888777777777778888777443
Q ss_pred ---chhhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 017057 72 ---EARVVNWKVDLFCLILLLVFMLPYYHCYLMLCNSGV 107 (378)
Q Consensus 72 ---~~R~~~W~~tL~~Ll~lLivviP~~i~~~l~~~~~~ 107 (378)
++-..+|+=....-+..+|+..++.+...++.+...
T Consensus 580 ~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v 618 (798)
T KOG3599|consen 580 QFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV 618 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 466778999998889999999999999888877533
No 23
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.37 E-value=2.2e+02 Score=28.36 Aligned_cols=20 Identities=15% Similarity=0.374 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 017057 85 LILLLVFMLPYYHCYLMLCN 104 (378)
Q Consensus 85 Ll~lLivviP~~i~~~l~~~ 104 (378)
.+....+=+|++..|-...+
T Consensus 59 ~~~A~~~~~P~Lely~~~c~ 78 (325)
T PF08317_consen 59 YVVAGYCTVPMLELYQFSCR 78 (325)
T ss_pred HHHHhccCChHHHHHHHHHH
Confidence 33444455688887777766
No 24
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=42.07 E-value=1.4e+02 Score=29.94 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=33.1
Q ss_pred ecchhheeehhhHHHHHHhhhccccc-cccchhhhhhcccCHHHH---HHHHHHHHH
Q 017057 146 IPQLVSRIGVIGVTVMAVLAGFGAVN-LPYSYLSLFIREIDESEI---KALERQLMQ 198 (378)
Q Consensus 146 ~e~~lsRIgViGVtlmAiLSGfGAVs-tPY~~~~~f~R~Vte~dI---~~~e~~l~~ 198 (378)
|++.++++|.=-|+. |+=||++=.| +.-.+.+-|.+.|.+.|. ..++++|+.
T Consensus 1 MD~lLak~~~QAvtf-AIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~ 56 (302)
T PF05508_consen 1 MDELLAKAGSQAVTF-AIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLES 56 (302)
T ss_pred ChHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 456777877776766 8999987443 344456667777888654 444444443
No 25
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.70 E-value=2.6e+02 Score=24.83 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=14.9
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHH
Q 017057 247 DQKEQDIKIMEAEVQALEELSKQL 270 (378)
Q Consensus 247 ~~~~~~i~~Lq~EI~~Le~l~~~L 270 (378)
....++|.+|+.|+..|++--..|
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777666554444
No 26
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.39 E-value=3.3e+02 Score=25.87 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=27.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (378)
Q Consensus 249 ~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~ 284 (378)
..+++.+|+.+++.++..++++.--+.+|....++.
T Consensus 82 q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~ 117 (251)
T PF11932_consen 82 QEQELASLEQQIEQIEETRQELVPLMEQMIDELEQF 117 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888877777777666663
No 27
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.15 E-value=3.6e+02 Score=26.89 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELR 278 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~ 278 (378)
+++..++.|...|++.+.+...+..+++
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~ 105 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQ 105 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555555555544
No 28
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=40.14 E-value=35 Score=24.61 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHH
Q 017057 248 QKEQDIKIMEAEVQALEELSKQLFL 272 (378)
Q Consensus 248 ~~~~~i~~Lq~EI~~Le~l~~~L~~ 272 (378)
+.....++|+.|+..|..+.+.||.
T Consensus 15 ~l~vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 15 QLRVRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred hheeeHHHHHHHHHHHHHHhHHHHh
Confidence 3445678999999999999999985
No 29
>PRK11637 AmiB activator; Provisional
Probab=38.80 E-value=2.3e+02 Score=29.23 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 254 KIMEAEVQALEELSKQLFLEIYEL 277 (378)
Q Consensus 254 ~~Lq~EI~~Le~l~~~L~~el~~L 277 (378)
.+++.+.+.++.+..++-.+..+|
T Consensus 187 ~~le~~~~~l~~~~~e~~~~k~~L 210 (428)
T PRK11637 187 AELEEKQSQQKTLLYEQQAQQQKL 210 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444443333333
No 30
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.24 E-value=1.4e+02 Score=23.47 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELR 278 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~ 278 (378)
+.|..||.|++.|++=..++-.+-.+|+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4567777777777777555555554444
No 31
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=38.02 E-value=3.4e+02 Score=25.29 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017057 186 ESEIKALERQLMQSIETCIAKKKKIILCQMEM 217 (378)
Q Consensus 186 e~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~ 217 (378)
+.++..+++....+.+.+.+-++++..++.+.
T Consensus 85 ~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA 116 (205)
T PRK06231 85 EAEINQANELKQQAQQLLENAKQRHENALAQA 116 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777666666556666655443
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.45 E-value=3.4e+02 Score=30.34 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=30.6
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 017057 2 GWGIAIYEGTVVTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVL 62 (378)
Q Consensus 2 ~~~~~~~~~~~~~~s~~~~f~~g~~ff~~~l~~dY~v~~~~~~~lFS~tfalS~~lfeLIL 62 (378)
+|+.+++.. .|+.=..=|++=.| .|++..|.-|..+ .+.||+.|.+-+.+.-||-
T Consensus 36 ~w~~~~~~d-~~~~~r~e~~~p~w-l~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~ 90 (697)
T PF09726_consen 36 VWALVLLAD-FMLEFRFEYLWPFW-LLLRSVYDSFKYQ----GLAFSVFFVCIAFTSDLIC 90 (697)
T ss_pred HHHHHHHHH-HHhhhHHHHHHHHH-HHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHH
Confidence 465555422 23333334444444 4567777666665 6678888876665554443
No 33
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=37.42 E-value=11 Score=32.57 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=0.0
Q ss_pred HhhhHhhHHhhHHHHHHHHHHhhccCCCCChH
Q 017057 297 LLGYALSIYCVYKMIKSLQSVVFKEAGSVDPV 328 (378)
Q Consensus 297 ~~g~~FsiYCvyKI~~s~iniif~r~~~~DPi 328 (378)
+.+.+|.-|||| ||+...+||-
T Consensus 5 ~a~~~~lgYciY----------FD~KRR~dP~ 26 (121)
T PF02064_consen 5 VAAAAFLGYCIY----------FDYKRRSDPD 26 (121)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHhh----------cccccccChH
Confidence 457789999998 8998888886
No 34
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.32 E-value=22 Score=31.57 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=21.3
Q ss_pred HHHHHhhhHhhHHhhHHHHHHHHHHhhccCCCCChHH
Q 017057 293 HMQNLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPVT 329 (378)
Q Consensus 293 r~~~~~g~~FsiYCvyKI~~s~iniif~r~~~~DPit 329 (378)
..-.+.|..|.-||+| ||...++||=-
T Consensus 13 I~agiag~af~gYciY----------Fd~KRrsdP~f 39 (143)
T KOG4056|consen 13 IAAGIAGLAFIGYCIY----------FDKKRRSDPDF 39 (143)
T ss_pred HHHHHHHHHHHHHHhh----------cccccccChhH
Confidence 3446778899999988 88888888864
No 35
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=36.85 E-value=2.5e+02 Score=23.35 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=32.2
Q ss_pred ccchhhhccccccccC----cchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 230 RSFFKRIVGTVVRSVQ----DDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (378)
Q Consensus 230 ~~~~~~~~~~s~~s~~----~~~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r 283 (378)
+.-+.+.+|..+--.+ .....+++..++.+|..|+.-...+-.++.+++...++
T Consensus 49 d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 49 DTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred cchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566654441111 12234566777777777777777777777777766554
No 36
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=36.49 E-value=3.4e+02 Score=25.08 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 257 EAEVQALEELSKQLFLEIYELRQAKEA 283 (378)
Q Consensus 257 q~EI~~Le~l~~~L~~el~~L~~~~~r 283 (378)
+.|.+.|.+|+.++-.|+.||+.+.+.
T Consensus 144 R~EaeQLQsLR~avRqElqELE~QL~D 170 (179)
T PF14723_consen 144 REEAEQLQSLRSAVRQELQELEFQLED 170 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999976554
No 37
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.39 E-value=3.3e+02 Score=28.52 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELR 278 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~ 278 (378)
+.|..|.+....|...+..+..|=.+++
T Consensus 161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l~ 188 (420)
T COG4942 161 ERIDALKATLKQLAAVRAEIAAEQAELT 188 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666555444444
No 38
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=35.97 E-value=2.3e+02 Score=22.85 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=18.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 248 QKEQDIKIMEAEVQALEELSKQLFLEIY 275 (378)
Q Consensus 248 ~~~~~i~~Lq~EI~~Le~l~~~L~~el~ 275 (378)
..-++|+.++.||.-||.=-.+|+.++.
T Consensus 58 eLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 58 ELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888877765555555443
No 39
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=35.13 E-value=1.8e+02 Score=31.47 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=19.2
Q ss_pred hHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 017057 250 EQDIKIMEAEVQA----LEELSKQLFLEIYELRQAKEAA 284 (378)
Q Consensus 250 ~~~i~~Lq~EI~~----Le~l~~~L~~el~~L~~~~~r~ 284 (378)
.+++.+|+.|+.. .++++++|-.+.+.+++..++.
T Consensus 218 ~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~l 256 (555)
T TIGR03545 218 KEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAEL 256 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3566666666655 5555555555555555444433
No 40
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.79 E-value=3.9e+02 Score=27.99 Aligned_cols=20 Identities=35% Similarity=0.177 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017057 194 RQLMQSIETCIAKKKKIILC 213 (378)
Q Consensus 194 ~~l~~t~~~l~~Kk~rl~~~ 213 (378)
+++.++...|.++.+++...
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~ 57 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQ 57 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444433
No 41
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.33 E-value=1.4e+02 Score=22.30 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=26.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (378)
Q Consensus 250 ~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~ 284 (378)
.+.+..|+.++..|+.-..+|-.++..|+...++-
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888877665543
No 42
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.06 E-value=2.8e+02 Score=32.03 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 017057 252 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSR 288 (378)
Q Consensus 252 ~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s~ 288 (378)
+.--|.+||+.|..-.+|.-.+-.+|+...-|+.++.
T Consensus 1093 ~~p~l~~qin~l~na~~qer~er~~Lkg~~mra~~aa 1129 (1243)
T KOG0971|consen 1093 DSPLLLQQINALRNAISQERHERSILKGAQMRASLAA 1129 (1243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhc
Confidence 3445678888888888888888889988777776543
No 43
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=33.74 E-value=1.5e+02 Score=31.77 Aligned_cols=50 Identities=28% Similarity=0.351 Sum_probs=35.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhh
Q 017057 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLG 299 (378)
Q Consensus 249 ~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s~T~~Gr~~~~~g 299 (378)
..++..+++.|+..++.--..+-....+|+...++. -|+-.+||-.|++|
T Consensus 458 l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~-ISk~y~gR~VnimG 507 (507)
T PF05600_consen 458 LEEKRQEAQEEQQELEPKLDALVERTRELQKQIEAD-ISKRYKGRPVNIMG 507 (507)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCeeeccC
Confidence 345666777777777777777777777887777665 34557888777765
No 44
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=33.41 E-value=90 Score=31.86 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=24.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017057 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (378)
Q Consensus 249 ~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~ 285 (378)
..++...|++|++.|+..+..|=.-+..+++..+...
T Consensus 142 ~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lt 178 (354)
T KOG2577|consen 142 VPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLT 178 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888888888888888666555555554444433
No 45
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=33.01 E-value=1e+02 Score=26.89 Aligned_cols=42 Identities=29% Similarity=0.307 Sum_probs=33.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccCchH
Q 017057 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQ--AKEAAAYSRTWR 291 (378)
Q Consensus 250 ~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~--~~~r~~~s~T~~ 291 (378)
...|+.||-|..++|.+...|-.-+..|+. .++|.++.+...
T Consensus 31 karIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 31 KARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 357999999999999999999998888885 555665544333
No 46
>PF14854 LURAP: Leucine rich adaptor protein
Probab=32.92 E-value=1.4e+02 Score=25.74 Aligned_cols=40 Identities=13% Similarity=0.362 Sum_probs=32.6
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017057 247 DQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 286 (378)
Q Consensus 247 ~~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~ 286 (378)
...+.+++.|++|..+|.++-..+-.+|-.+..-.+..++
T Consensus 18 ~~Ld~kl~~Lr~EM~~LRqlDvkLL~QL~~vNEsIe~~KW 57 (121)
T PF14854_consen 18 SNLDAKLAFLRKEMAGLRQLDVKLLQQLLAVNESIEEVKW 57 (121)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4567899999999999999999998888877766555543
No 47
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.36 E-value=3.3e+02 Score=23.54 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=32.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017057 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 286 (378)
Q Consensus 248 ~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~ 286 (378)
...++...|+.+|..||.=.+.+-.++.+|+.+..+.-.
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455778889999999999999999999999988776643
No 48
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.05 E-value=1.9e+02 Score=23.20 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=21.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 250 EQDIKIMEAEVQALEELSKQLFLEIYE 276 (378)
Q Consensus 250 ~~~i~~Lq~EI~~Le~l~~~L~~el~~ 276 (378)
.+.|.-||+||+.|++=..+|..|...
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999988888877665
No 49
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=30.02 E-value=6.9e+02 Score=27.93 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 017057 25 LWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVL 62 (378)
Q Consensus 25 ~~ff~~~l~~dY~v~~~~~~~lFS~tfalS~~lfeLIL 62 (378)
++++..+.++-..-.+.--.++++.....++.++..+.
T Consensus 290 lf~~y~~~~~~~~~~~~~~l~~~~~l~i~~l~l~~iv~ 327 (700)
T COG1480 290 LFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLRIVG 327 (700)
T ss_pred HHHHHHHHhccCHHhhhhHHHHHHHHHHHHHHHHhccc
Confidence 33344444444444445566777777777777777664
No 50
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.54 E-value=3e+02 Score=22.36 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 186 ESEIKALERQLMQSIETCIAKKKK 209 (378)
Q Consensus 186 e~dI~~~e~~l~~t~~~l~~Kk~r 209 (378)
-.|+..+|+++..++.-+.+||.+
T Consensus 48 ~~eL~~LE~~Le~aL~~VR~rK~~ 71 (100)
T PF01486_consen 48 LKELQQLEQQLESALKRVRSRKDQ 71 (100)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHH
Confidence 355666666666666665555544
No 51
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=29.51 E-value=2.2e+02 Score=28.14 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCchHHHH--HHHhhh-HhhHHhhHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELS---KQLFLEIYELRQAKEAAAYSRTWRGHM--QNLLGY-ALSIYCVYKMIKSL 314 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~---~~L~~el~~L~~~~~r~~~s~T~~Gr~--~~~~g~-~FsiYCvyKI~~s~ 314 (378)
++.+.|+.++..|.+.. ++|..|..+|.+... ....+--+|-+ -+++.- ++.-+|-|..=.++
T Consensus 31 ~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~-~~k~rG~wGE~~Le~iLe~~gl~~~~~y~~Q~~~ 99 (304)
T PF02646_consen 31 EEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK-NSKTRGNWGEMQLERILEDSGLPEGCDYETQVSL 99 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-CCCchhhHHHHHHHHHHHHcCCCcccchhhcccc
Confidence 34567888999999999 999999999998887 33343334432 234433 36677777544433
No 52
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=29.10 E-value=50 Score=28.57 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHH
Q 017057 253 IKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNL 297 (378)
Q Consensus 253 i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s~T~~Gr~~~~ 297 (378)
|-.++.+|+.|++=......|+..++.+.++.+...+-+|||++.
T Consensus 46 ~l~~rs~i~~~~~k~~~~~~~lrs~~geveE~e~~e~~~drfy~a 90 (121)
T PF12507_consen 46 ILALRSEIEALDAKYHSDSQQLRSCCGEVEEAEEKEEERDRFYEA 90 (121)
T ss_pred HHHHhhhhhhhhhhhcchhhhhHhhhccchHHHHHHHhHhhhhhh
Confidence 456677777777777777777777777777777777777777653
No 53
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=28.83 E-value=2.8e+02 Score=24.19 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-CccchhHHHHHHHHHHHHHHHHHH
Q 017057 81 DLFCLILLLVFMLPYYHCYLMLCNS-GVRKERAALGAILFLLAFLYAFWR 129 (378)
Q Consensus 81 tL~~Ll~lLivviP~~i~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~Fwk 129 (378)
.++.=+-.+|+.+|+++.+.++..- +-+++ ++ +-+.+.+++..+|+
T Consensus 64 slPfW~wa~ifllPYLQ~FlfL~sCTR~DP~-~v--gycv~P~cl~~~c~ 110 (128)
T PF15190_consen 64 SLPFWMWALIFLLPYLQLFLFLYSCTRADPR-TV--GYCVIPVCLATLCS 110 (128)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHcCCCch-hh--eeeeHHHHHHHHHh
Confidence 4555566677788888877776553 22222 22 22233455666663
No 54
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.06 E-value=1.1e+02 Score=24.18 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 017057 11 TVVTGSLILLGWAGLWFLNIRLYKEYEEKR 40 (378)
Q Consensus 11 ~~~~~s~~~~f~~g~~ff~~~l~~dY~v~~ 40 (378)
+.+.+++++.+++| +|+.+|.++.|=-+|
T Consensus 8 l~ivl~ll~G~~~G-~fiark~~~k~lk~N 36 (71)
T COG3763 8 LLIVLALLAGLIGG-FFIARKQMKKQLKDN 36 (71)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhC
Confidence 35566666666666 677777777775554
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.30 E-value=5.3e+02 Score=24.23 Aligned_cols=91 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhccchhhhccccccccCcchhhHhHHHHHHHHHHHHH
Q 017057 186 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEE 265 (378)
Q Consensus 186 e~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~i~~Lq~EI~~Le~ 265 (378)
+.++..++.+++...+.+.+.+.++...-.+.+. ......++-++|+.|+..+++
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDS-------------------------VINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhhhHhhH
Q 017057 266 LSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSI 304 (378)
Q Consensus 266 l~~~L~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~Fsi 304 (378)
=.+.+-.++.+++...+..-+- .|=.....|.++++
T Consensus 154 ~~~~l~~~~~~~~~~~~~~wf~---~Gg~v~~~GlllGl 189 (206)
T PRK10884 154 KVDAANLQLDDKQRTIIMQWFM---YGGGVAGIGLLLGL 189 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HchHHHHHHHHHHH
No 56
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.32 E-value=2.1e+02 Score=21.49 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017057 253 IKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (378)
Q Consensus 253 i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~ 285 (378)
+..++.|+..++..-..+-.|..+++...++.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666555555555556655555544
No 57
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.92 E-value=2.2e+02 Score=27.04 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=34.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017057 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 286 (378)
Q Consensus 248 ~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~ 286 (378)
...+++.-++.|+.-||.+..++-.|+.-|+.|.++-+.
T Consensus 131 AKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~ 169 (210)
T KOG1691|consen 131 AKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRN 169 (210)
T ss_pred HhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788899999999999999999999999988877766
No 58
>PRK10869 recombination and repair protein; Provisional
Probab=25.82 E-value=3.7e+02 Score=28.96 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=19.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (378)
Q Consensus 250 ~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~ 279 (378)
++++..|+.|++.+++--.++..+|++.|.
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777666666666666666553
No 59
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=25.75 E-value=4.9e+02 Score=23.31 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 187 SEIKALERQLMQSIETCIAKKKKIILCQME 216 (378)
Q Consensus 187 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 216 (378)
.+++.+++....+.+...+-++++..++.+
T Consensus 60 ~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~e 89 (167)
T PRK08475 60 KRLEEIQEKLKESKEKKEDALKKLEEAKEK 89 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666655555555555543
No 60
>PRK15396 murein lipoprotein; Provisional
Probab=25.54 E-value=2.5e+02 Score=22.43 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 187 SEIKALERQLMQSIETCIAKKKKIILCQME 216 (378)
Q Consensus 187 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 216 (378)
+|++.+..+.++.......-|..+..++.+
T Consensus 32 sqV~~L~~kvdql~~dv~~~~~~~~~a~~e 61 (78)
T PRK15396 32 SDVQTLNAKVDQLSNDVNAMRSDVQAAKDD 61 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666665555555555544433
No 61
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.30 E-value=2.2e+02 Score=24.56 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=29.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (378)
Q Consensus 248 ~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~ 284 (378)
+.+.++..++.|++.|+.-+.++..|+++|-...+..
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999988887655444
No 62
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=25.21 E-value=2e+02 Score=26.45 Aligned_cols=37 Identities=32% Similarity=0.334 Sum_probs=23.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 017057 248 QKEQDIKIMEAEVQALEELSK---QLFLEIYELRQAKEAA 284 (378)
Q Consensus 248 ~~~~~i~~Lq~EI~~Le~l~~---~L~~el~~L~~~~~r~ 284 (378)
..+++|++|+.||+.||++.+ .|-.....|+++.++.
T Consensus 124 eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 124 ELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888887743 3444555555555543
No 63
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=25.13 E-value=4.1e+02 Score=31.72 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~ 279 (378)
.++..||.|..+|..+.++|-.++.++++
T Consensus 1267 ~~LesLq~~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1267 KDLESLQREFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46778999999998888888777776653
No 64
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=24.97 E-value=67 Score=24.29 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=25.5
Q ss_pred chhheeehhhHHHHHHhhhccccccccchhhhhhc------ccCHHHHHHHHHHHHHHHHHH
Q 017057 148 QLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIR------EIDESEIKALERQLMQSIETC 203 (378)
Q Consensus 148 ~~lsRIgViGVtlmAiLSGfGAVstPY~~~~~f~R------~Vte~dI~~~e~~l~~t~~~l 203 (378)
+.+--++|+|++++...| |+.|.| +....+....|++|+...+++
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~-----------Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLL 55 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGAS-----------FTLFIRRILINSNAKKQDVDSMEQKLDRIIELL 55 (58)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 334445666666665543 333444 334456667777777776653
No 65
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.47 E-value=6.1e+02 Score=24.03 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=9.6
Q ss_pred HHHHHHHHhcCccchHHHHhh
Q 017057 330 MTISIFLQFFDIGINAQLLSQ 350 (378)
Q Consensus 330 r~L~i~~~~~~~~~Dv~~wsq 350 (378)
|+++..-.-.++.-.+..+..
T Consensus 153 ~vlea~~~E~~yg~~i~~~~~ 173 (251)
T PF11932_consen 153 RVLEAYQIEMEYGRTIEVYQG 173 (251)
T ss_pred HHHHHHHHHHHhCCceeEEEE
Confidence 555555444444433333333
No 66
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.09 E-value=5.7e+02 Score=23.53 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=19.7
Q ss_pred cccchhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 017057 69 LSKEARVVNWKVDLFCLILLLVFMLPYYHCYL 100 (378)
Q Consensus 69 ~~~~~R~~~W~~tL~~Ll~lLivviP~~i~~~ 100 (378)
.+...|...|+..+..++.+++.+.=+.....
T Consensus 138 ~~~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~ 169 (206)
T PF06570_consen 138 KKKKKRPSWWKYILISVLAMVLWIVIFVLTSF 169 (206)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888898777666665555444443333
No 67
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.86 E-value=3.9e+02 Score=21.52 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 189 IKALERQLMQSIETCIAKKKKIILCQM 215 (378)
Q Consensus 189 I~~~e~~l~~t~~~l~~Kk~rl~~~~~ 215 (378)
...+|.+..++.|.|.-=+-+++.++.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKe 32 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888887766566666653
No 68
>smart00338 BRLZ basic region leucin zipper.
Probab=23.79 E-value=2.5e+02 Score=20.86 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r 283 (378)
+.+..|+.++..|+.-...|-.++..|+.+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777765543
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.60 E-value=7.3e+02 Score=24.62 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 252 DIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (378)
Q Consensus 252 ~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~ 282 (378)
+..+++.+|+.+++-..++-.++.+++..++
T Consensus 238 el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 238 ELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 70
>PF06600 DUF1140: Protein of unknown function (DUF1140); InterPro: IPR009520 This entry is represented by Bacteriophage bIL286, Orf36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short, hypothetical phage and bacterial proteins. The function of this family is unknown.
Probab=23.34 E-value=4.5e+02 Score=22.12 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 017057 198 QSIETCIAKKKKIILCQMEMDRIQ 221 (378)
Q Consensus 198 ~t~~~l~~Kk~rl~~~~~~~~~~~ 221 (378)
--.|.+..||+|.+....++++++
T Consensus 20 kei~~~~kkkera~~~~~K~ae~g 43 (107)
T PF06600_consen 20 KEIDSLMKKKERADINAHKLAENG 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334556778888888777777644
No 71
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=23.31 E-value=2.4e+02 Score=30.67 Aligned_cols=27 Identities=22% Similarity=0.643 Sum_probs=24.8
Q ss_pred ceecchhheeehhhHHHHHHhhhcccc
Q 017057 144 FTIPQLVSRIGVIGVTVMAVLAGFGAV 170 (378)
Q Consensus 144 ~~~e~~lsRIgViGVtlmAiLSGfGAV 170 (378)
+.+++...|+|.-|=.++-++.||||-
T Consensus 341 ~~mDr~m~~~GL~Gk~~iPl~~GfGCn 367 (591)
T TIGR00437 341 FLMDGIMNKFGLSGRAFIPLILGFGCN 367 (591)
T ss_pred HHHHHHHHHcCCCcccchhhHhccCch
Confidence 467999999999999999999999983
No 72
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=23.27 E-value=2.9e+02 Score=22.51 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 187 SEIKALERQLMQSIETCIAKKKKIILCQME 216 (378)
Q Consensus 187 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 216 (378)
+|++.+..+.++.......-|.....++.+
T Consensus 31 s~V~~L~~kvdql~~dv~~a~aaa~aAk~E 60 (85)
T PRK09973 31 SNVQTLNAKIARLEQDMKALRPQIYAAKSE 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777766666666655555555555444
No 73
>PRK09039 hypothetical protein; Validated
Probab=22.85 E-value=7.9e+02 Score=24.75 Aligned_cols=49 Identities=8% Similarity=0.093 Sum_probs=35.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHh
Q 017057 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA-YSRTWRGHMQNLL 298 (378)
Q Consensus 250 ~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~-~s~T~~Gr~~~~~ 298 (378)
..++..|++||++|+.--.++-.+|.+.+.+.+..+ .-.....++.+.+
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999998888888888886443333 3455666666654
No 74
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=22.39 E-value=5.2e+02 Score=27.55 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=42.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHH--HHHHh-hhHhhHHhhHH
Q 017057 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGH--MQNLL-GYALSIYCVYK 309 (378)
Q Consensus 250 ~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s~T~~Gr--~~~~~-g~~FsiYCvyK 309 (378)
.++-..|+.||..|.++..+|..|-..|.+..+.....+--+|- +-+++ .-++-=+|-|.
T Consensus 164 ~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~sGL~~~~~y~ 226 (475)
T PRK10361 164 AQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYE 226 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHHhCCCcCCcce
Confidence 45568899999999999999999999999988765444444554 33444 22344556553
No 75
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=22.00 E-value=9.4e+02 Score=25.29 Aligned_cols=117 Identities=19% Similarity=0.192 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc-ccccchhhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHH--HHHHHHHH
Q 017057 48 SVVFAFSCNLLQLVLFEIIP-ILSKEARVVNWKVDLFCLILLLVFMLPYYHCYLMLCNSGVRKERAALGA--ILFLLAFL 124 (378)
Q Consensus 48 S~tfalS~~lfeLILfEI~~-~~~~~~R~~~W~~tL~~Ll~lLivviP~~i~~~l~~~~~~~~~~~~~~~--~~~~~~~l 124 (378)
-++|++++.-|...+|-..+ ..-.+.-.+.|.-+. +++++.+ .+++++| ..+...|.+. +..++..+
T Consensus 165 fi~f~lYi~gf~~FV~sL~k~~yk~QFg~fawtH~s----ll~Vv~q----s~l~i~N--~feG~fWFl~P~~lvicnDi 234 (432)
T KOG1440|consen 165 FICFALYLIGFVSFVLSLRKGIYKLQFGLFAWTHMS----LLLVVTQ----SHLVIQN--LFEGLFWFLVPAGLVICNDI 234 (432)
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH----HHHHHHH----HHHHHhc--ccchHHHHHHHhHhheeCch
Confidence 36788999999998888776 665666677776543 3334433 4444555 3334433332 33334555
Q ss_pred HHHH---HhCC-cccCCCCCCCcceecchhhe---eehhhHHHHHHhhhccccccccchh
Q 017057 125 YAFW---RMGI-HFPMPSPEKGFFTIPQLVSR---IGVIGVTVMAVLAGFGAVNLPYSYL 177 (378)
Q Consensus 125 ~~Fw---kiG~-~~p~~~~~~~~~~~e~~lsR---IgViGVtlmAiLSGfGAVstPY~~~ 177 (378)
.++| .+|. |.--+++++ ++|..+.- .-|.|+.+-.+|+.+---.||=+++
T Consensus 235 ~AY~~Gf~fGktPLiklSPKK---TwEGFiGg~~~tvv~~i~~s~vL~~~~~~~cp~~d~ 291 (432)
T KOG1440|consen 235 FAYLFGFFFGKTPLIKLSPKK---TWEGFIGGTFGTVVFGILFSYVLGHYTFFTCPVKDF 291 (432)
T ss_pred HHHHHhhhhcCCcccccCCCC---ccchhhchhHHHHHHHHHHHHHhccCeEEEeccccc
Confidence 6666 6772 333456666 45655544 2234555555555555555554443
No 76
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=21.83 E-value=2.5e+02 Score=26.33 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=55.4
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhccchhhhccccc----cccCcchhhHhHHHH
Q 017057 181 IREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVV----RSVQDDQKEQDIKIM 256 (378)
Q Consensus 181 ~R~Vte~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~s~~~~~~~~~i~~L 256 (378)
.|..+..++..+|+.+..-..+=-.+|.+|+..- |+=-|.++.+| +-|...+.+.+-..|
T Consensus 54 k~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~L----------------gL~pRQVavWFQNRRARwK~kqlE~d~~~L 117 (198)
T KOG0483|consen 54 KRRLTSEQVKFLEKSFESEKKLEPERKKKLAKEL----------------GLQPRQVAVWFQNRRARWKTKQLEKDYESL 117 (198)
T ss_pred cccccHHHHHHhHHhhccccccChHHHHHHHHhh----------------CCChhHHHHHHhhccccccchhhhhhHHHH
Confidence 4567777788888777665433333333443221 11112222244 124555677778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017057 257 EAEVQALEELSKQLFLEIYELRQAKEAAA 285 (378)
Q Consensus 257 q~EI~~Le~l~~~L~~el~~L~~~~~r~~ 285 (378)
+.+.+.|..-...|-.|..+|+.+..+..
T Consensus 118 k~~~~~l~~~~~~Lq~e~~eL~~~~~~~~ 146 (198)
T KOG0483|consen 118 KRQLESLRSENDRLQSEVQELVAELSSLK 146 (198)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999887766544
No 77
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=21.71 E-value=2.8e+02 Score=25.14 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhcccccc
Q 017057 54 SCNLLQLVLFEIIPILSKE 72 (378)
Q Consensus 54 S~~lfeLILfEI~~~~~~~ 72 (378)
.+.++-|-++++..+..+.
T Consensus 39 ~i~l~ilai~q~~~~~~~~ 57 (182)
T PF09323_consen 39 AILLLILAIVQLWRWFRPK 57 (182)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3555556666666655543
No 78
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.07 E-value=5.5e+02 Score=25.03 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017057 187 SEIKALERQLMQSIETCIAKKKKIILCQMEMD 218 (378)
Q Consensus 187 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 218 (378)
..|.++.+++.+-.+.+..=+.+++..+.+++
T Consensus 180 eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~ 211 (259)
T PF08657_consen 180 EKIAALRQRYNQLSNSIAYLEAEVAEQEAQLE 211 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888777766665566666655544
No 79
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.79 E-value=4.7e+02 Score=21.35 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=29.3
Q ss_pred cchhhhccccccccC----cchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 231 SFFKRIVGTVVRSVQ----DDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (378)
Q Consensus 231 ~~~~~~~~~s~~s~~----~~~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r 283 (378)
.-+.+.+|..|-..+ .....+++..++.+|..++.=...+-.++.+++...+.
T Consensus 46 ~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 46 AEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred chHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566655552111 12234556666667766666666666666666665544
No 80
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=20.72 E-value=3e+02 Score=21.30 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017057 254 KIMEAEVQALEELSKQLFLEIYE 276 (378)
Q Consensus 254 ~~Lq~EI~~Le~l~~~L~~el~~ 276 (378)
+.++.|+++|+.+..-|+.++++
T Consensus 21 s~lr~eiealkY~N~yL~~~~v~ 43 (66)
T PF07438_consen 21 SELRKEIEALKYMNDYLFDQFVR 43 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999887765
No 81
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.55 E-value=8.5e+02 Score=24.33 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017057 187 SEIKALERQLMQSIETCIAKKKKIILCQMEMD 218 (378)
Q Consensus 187 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 218 (378)
.+..++...+......+..||+++...+.+++
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666655443
No 82
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=20.49 E-value=2.6e+02 Score=29.32 Aligned_cols=91 Identities=13% Similarity=0.179 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-------Cccchh---H-HHHHHHHHHHHHHHH------------HHhCCccc-C
Q 017057 81 DLFCLILLLVFMLPYYHCYLMLCNS-------GVRKER---A-ALGAILFLLAFLYAF------------WRMGIHFP-M 136 (378)
Q Consensus 81 tL~~Ll~lLivviP~~i~~~l~~~~-------~~~~~~---~-~~~~~~~~~~~l~~F------------wkiG~~~p-~ 136 (378)
..+.+...-++.+|-.++..+-++. -+.... . .-..++.+..|+|.+ -|-|..+| +
T Consensus 272 vmPiIFAssll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~Fs~fyt~i~~nP~~iAenL~k~G~~IPGi 351 (434)
T PRK12907 272 VIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFAHPIGMTLYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPGI 351 (434)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcCCCc
Confidence 4677778888888988876541110 001111 1 111223333343322 25666777 2
Q ss_pred CCCCCCcceecchhheeehhhHHHHHHhhhccccc
Q 017057 137 PSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVN 171 (378)
Q Consensus 137 ~~~~~~~~~~e~~lsRIgViGVtlmAiLSGfGAVs 171 (378)
..++++.-++++.++|++++|-..+|++++....-
T Consensus 352 RPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~ 386 (434)
T PRK12907 352 RPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVF 386 (434)
T ss_pred CCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 23355566889999999999999999999875553
No 83
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=20.13 E-value=2.6e+02 Score=28.93 Aligned_cols=90 Identities=17% Similarity=0.280 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC-----------ccc-hh--HH-HHHHHHHHHHHHHHH------------HhCCc
Q 017057 81 DLFCLILLLVFMLPYYHCYLMLCNSG-----------VRK-ER--AA-LGAILFLLAFLYAFW------------RMGIH 133 (378)
Q Consensus 81 tL~~Ll~lLivviP~~i~~~l~~~~~-----------~~~-~~--~~-~~~~~~~~~~l~~Fw------------kiG~~ 133 (378)
..+.+...-++..|..++..+-+... +.. +. .. -...+.+..|.|.+- |-|..
T Consensus 240 vmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~fs~fys~i~~nP~diAe~lkk~g~~ 319 (404)
T PRK12417 240 GMPIMYSMSLLVFPQYIIILILSIFPNNSGISADMDMLSFGSPLGVTVYLILQFLLSYFFSFVNINTKQIAKDMLKSGNY 319 (404)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCc
Confidence 46778888888889888765421110 110 00 11 112233334444322 44556
Q ss_pred cc-CCCCCCCcceecchhheeehhhHHHHHHhhhcccc
Q 017057 134 FP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAV 170 (378)
Q Consensus 134 ~p-~~~~~~~~~~~e~~lsRIgViGVtlmAiLSGfGAV 170 (378)
+| +..++.+.-++++.+.|++.+|-..+|++++.-.+
T Consensus 320 IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~ia~lP~~ 357 (404)
T PRK12417 320 IPGVYPGKDTERYLNYIARRFSWFGALFVTVIAGIPLY 357 (404)
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 22333455578999999999999999999996444
No 84
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.10 E-value=6.7e+02 Score=23.65 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=10.3
Q ss_pred hhHHHHHHhhhc
Q 017057 156 IGVTVMAVLAGF 167 (378)
Q Consensus 156 iGVtlmAiLSGf 167 (378)
++|+++|++-|.
T Consensus 48 lvilV~avi~gl 59 (201)
T COG1422 48 LVILVAAVITGL 59 (201)
T ss_pred HHHHHHHHHHHH
Confidence 789999999886
No 85
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=20.06 E-value=2.6e+02 Score=28.19 Aligned_cols=37 Identities=14% Similarity=0.289 Sum_probs=26.9
Q ss_pred CcchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHH
Q 017057 245 QDDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQ 295 (378)
Q Consensus 245 ~~~~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s~T~~Gr~~ 295 (378)
+...++.+...+|.||+ +|+.+..+....+++-|+++
T Consensus 99 n~t~s~~dr~~iq~Ei~--------------~l~~el~~iantt~fnG~~l 135 (360)
T COG1344 99 NGTLSDADRAAIQKEIE--------------QLLDELDNIANTTSFNGEYL 135 (360)
T ss_pred cCCCCHHHHHHHHHHHH--------------HHHHHHHHHHhcccCCCeEe
Confidence 33345567788888888 77778888887777777754
Done!