Query 017057
Match_columns 378
No_of_seqs 126 out of 165
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:13:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 83.7 2.4 8.2E-05 26.5 4.8 28 252-279 3-30 (33)
2 2v71_A Nuclear distribution pr 62.2 62 0.0021 28.9 10.4 28 252-279 89-116 (189)
3 3eff_K Voltage-gated potassium 57.5 39 0.0013 27.8 7.9 31 74-104 1-31 (139)
4 3lay_A Zinc resistance-associa 55.0 1.1E+02 0.0037 26.8 11.1 34 248-284 110-143 (175)
5 2l5g_A GPS2 protein, G protein 49.7 17 0.00057 24.1 3.3 26 249-274 13-38 (38)
6 2js5_A Uncharacterized protein 49.2 18 0.0006 27.4 3.8 54 251-313 3-56 (71)
7 3nmd_A CGMP dependent protein 49.2 37 0.0013 25.7 5.7 23 255-277 44-66 (72)
8 3csx_A Putative uncharacterize 49.1 10 0.00035 29.4 2.6 57 248-313 12-68 (81)
9 3ra3_B P2F; coiled coil domain 48.4 9.4 0.00032 23.0 1.8 15 250-264 13-27 (28)
10 2zqm_A Prefoldin beta subunit 45.6 1.1E+02 0.0037 24.0 9.6 37 249-285 75-111 (117)
11 2wt7_A Proto-oncogene protein 39.2 65 0.0022 23.2 5.6 33 251-283 23-55 (63)
12 2aze_B Transcription factor E2 38.4 48 0.0016 26.7 5.2 37 251-287 6-42 (106)
13 1go4_E MAD1 (mitotic arrest de 37.4 50 0.0017 26.5 5.1 17 249-265 73-89 (100)
14 3tnu_B Keratin, type II cytosk 34.8 65 0.0022 26.5 5.6 32 251-282 43-74 (129)
15 2jee_A YIIU; FTSZ, septum, coi 34.6 1E+02 0.0036 23.7 6.2 30 250-279 19-48 (81)
16 4etp_A Kinesin-like protein KA 33.7 1.2E+02 0.0041 29.9 8.3 29 251-279 31-59 (403)
17 3tnu_A Keratin, type I cytoske 33.5 70 0.0024 26.4 5.6 33 251-283 45-77 (131)
18 3vou_A ION transport 2 domain 32.5 1.2E+02 0.0041 25.1 7.0 16 204-219 123-138 (148)
19 1t3j_A Mitofusin 1; coiled coi 32.4 1E+02 0.0034 24.6 6.0 20 248-267 51-70 (96)
20 1t2k_D Cyclic-AMP-dependent tr 31.1 1.1E+02 0.0036 21.8 5.6 33 251-283 22-54 (61)
21 3ghg_A Fibrinogen alpha chain; 30.3 3.2E+02 0.011 28.1 10.7 37 249-285 115-151 (562)
22 3ghg_C Fibrinogen gamma chain; 30.2 4.1E+02 0.014 26.3 11.4 31 186-216 37-67 (411)
23 1kd8_A GABH AIV, GCN4 acid bas 28.3 1.3E+02 0.0043 19.7 4.9 32 252-283 2-33 (36)
24 1fmh_A General control protein 27.3 1.2E+02 0.004 18.9 4.6 28 252-279 2-29 (33)
25 2yy0_A C-MYC-binding protein; 26.8 98 0.0033 21.8 4.6 34 249-282 17-50 (53)
26 3q8t_A Beclin-1; autophagy, AT 26.5 1.2E+02 0.0043 23.7 5.7 29 252-280 5-33 (96)
27 3ra3_A P1C; coiled coil domain 26.1 42 0.0015 20.2 2.1 17 248-264 11-27 (28)
28 1jnm_A Proto-oncogene C-JUN; B 26.0 1.4E+02 0.0047 21.3 5.4 32 251-282 22-53 (62)
29 1gd2_E Transcription factor PA 25.9 1.1E+02 0.0038 22.8 5.0 33 249-281 27-59 (70)
30 3twe_A Alpha4H; unknown functi 25.9 80 0.0027 18.8 3.2 17 268-284 4-20 (27)
31 4fi5_A Nucleoprotein; structur 25.2 2.8E+02 0.0095 22.6 9.0 71 188-282 23-93 (113)
32 1g6u_A Domain swapped dimer; d 24.3 1.1E+02 0.0039 20.4 4.1 25 250-274 19-43 (48)
33 2xdj_A Uncharacterized protein 23.5 1.5E+02 0.0051 22.8 5.5 21 255-275 45-65 (83)
34 2dgc_A Protein (GCN4); basic d 22.7 1.1E+02 0.0037 22.2 4.3 31 251-281 30-60 (63)
35 1t3j_A Mitofusin 1; coiled coi 22.1 93 0.0032 24.8 4.1 12 286-297 72-83 (96)
36 2l2l_B Methyl-CPG-binding doma 20.7 1.2E+02 0.0041 19.9 3.6 17 183-199 6-22 (36)
37 1ci6_A Transcription factor AT 20.7 2E+02 0.0069 20.6 5.4 30 252-281 24-53 (63)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=83.73 E-value=2.4 Score=26.53 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 252 DIKIMEAEVQALEELSKQLFLEIYELRQ 279 (378)
Q Consensus 252 ~i~~Lq~EI~~Le~l~~~L~~el~~L~~ 279 (378)
+|+.|++||++|+.=-..|-.|+..|++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5778888888777665566666665553
No 2
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=62.25 E-value=62 Score=28.85 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 252 DIKIMEAEVQALEELSKQLFLEIYELRQ 279 (378)
Q Consensus 252 ~i~~Lq~EI~~Le~l~~~L~~el~~L~~ 279 (378)
.++.||.|+..|.....+|-..+.+|+.
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888877775
No 3
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=57.46 E-value=39 Score=27.78 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=17.0
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 017057 74 RVVNWKVDLFCLILLLVFMLPYYHCYLMLCN 104 (378)
Q Consensus 74 R~~~W~~tL~~Ll~lLivviP~~i~~~l~~~ 104 (378)
|..+|+-.+.+++++++++.-...++..+.+
T Consensus 1 r~~~~r~~~~~~~~~~~~~~~~a~~~~~~e~ 31 (139)
T 3eff_K 1 SALHWRAAGAATVLLVIVLLAGSYLAVLAER 31 (139)
T ss_dssp CTHHHHTHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666555555555555555433
No 4
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=55.05 E-value=1.1e+02 Score=26.81 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=23.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (378)
Q Consensus 248 ~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~ 284 (378)
.++++|+++..||. +++.++..+-.+++.+.++.
T Consensus 110 ~DeakI~aL~~Ei~---~Lr~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 110 PDTAKINAVAKEME---SLGQKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 45677888888887 44557777777777666544
No 5
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.75 E-value=17 Score=24.07 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=22.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHH
Q 017057 249 KEQDIKIMEAEVQALEELSKQLFLEI 274 (378)
Q Consensus 249 ~~~~i~~Lq~EI~~Le~l~~~L~~el 274 (378)
..++|..|+.+.++|.+=+-|||.+|
T Consensus 13 tkeQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34789999999999999999999864
No 6
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=49.21 E-value=18 Score=27.43 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhhhHhhHHhhHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKS 313 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~FsiYCvyKI~~s 313 (378)
+++.+|+.||.-|.....++-.||++|-.. +...+-+++.+.=..|-+|+=...
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEd---------LP~~w~~i~~vA~~tyda~~~l~~ 56 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAED---------LPTGWNRIMEVAEKTYEAYRQLDE 56 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------TTTSGGGHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhcc---------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999998642 122222555666566666655443
No 7
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.20 E-value=37 Score=25.69 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017057 255 IMEAEVQALEELSKQLFLEIYEL 277 (378)
Q Consensus 255 ~Lq~EI~~Le~l~~~L~~el~~L 277 (378)
.|+.|++..++.-++|-.++++.
T Consensus 44 eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 44 ELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334443333333444444343
No 8
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=49.08 E-value=10 Score=29.41 Aligned_cols=57 Identities=14% Similarity=0.332 Sum_probs=35.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhhhHhhHHhhHHHHHH
Q 017057 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKS 313 (378)
Q Consensus 248 ~~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s~T~~Gr~~~~~g~~FsiYCvyKI~~s 313 (378)
+..+++.+|+.||.-|.....++-.|||+|-.. --..|. +++.+.=..|-+|+=...
T Consensus 12 ~t~~di~eLkkevkKL~~~A~q~kmdLHDLaEd-----LP~~w~----~i~~vA~~tyda~~~l~~ 68 (81)
T 3csx_A 12 PTPEAVADLKKKVRKLNSKAGQMKMDLHDLAEG-----LPTDYE----NLVETAEKTYEIFRELDQ 68 (81)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHH-----TTTTGG----GHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chhhHH----HHHHHHHHHHHHHHHHHH
Confidence 344678899999999999999999999998653 112222 555555555655554443
No 9
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=48.37 E-value=9.4 Score=23.02 Aligned_cols=15 Identities=47% Similarity=0.669 Sum_probs=9.1
Q ss_pred hHhHHHHHHHHHHHH
Q 017057 250 EQDIKIMEAEVQALE 264 (378)
Q Consensus 250 ~~~i~~Lq~EI~~Le 264 (378)
.++|++|+-||++||
T Consensus 13 kqeiaaleyeiaale 27 (28)
T 3ra3_B 13 KQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 345666666666655
No 10
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=45.58 E-value=1.1e+02 Score=24.05 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=28.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017057 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (378)
Q Consensus 249 ~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~ 285 (378)
..+++..++.+|..|+.-...+-.++.+++...++.-
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888887666554
No 11
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=39.17 E-value=65 Score=23.22 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r 283 (378)
+.+..|+.|+..|+.-...|-.++..|+.+...
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888777766554
No 12
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=38.35 E-value=48 Score=26.70 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 287 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~~s 287 (378)
+++..|+.|++.|+..++.|=.-+..+++..+.....
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567889999999998888888777777665555443
No 13
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.35 E-value=50 Score=26.50 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=11.1
Q ss_pred hhHhHHHHHHHHHHHHH
Q 017057 249 KEQDIKIMEAEVQALEE 265 (378)
Q Consensus 249 ~~~~i~~Lq~EI~~Le~ 265 (378)
..+++..||.|+..|..
T Consensus 73 ~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 73 LREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44667777777775543
No 14
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.78 E-value=65 Score=26.48 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~ 282 (378)
..|..|+.|+++++.+..+|=..+.+++.+.+
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888777777766544
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=34.58 E-value=1e+02 Score=23.72 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=23.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (378)
Q Consensus 250 ~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~ 279 (378)
.+.|.-||+||+.|++=..+|..+..++++
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788899999999988888887777443
No 16
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.69 E-value=1.2e+02 Score=29.86 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~ 279 (378)
+++.+++++...-|.+++.|++++.||+.
T Consensus 31 ~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 31 LGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34566777777788899999999999984
No 17
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.50 E-value=70 Score=26.39 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r 283 (378)
..|..|+.|+++++.+...|=..+.+++.+.+.
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 467888999999988888888877777765443
No 18
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=32.50 E-value=1.2e+02 Score=25.08 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhh
Q 017057 204 IAKKKKIILCQMEMDR 219 (378)
Q Consensus 204 ~~Kk~rl~~~~~~~~~ 219 (378)
.++++|++..+.++++
T Consensus 123 ~~~~~rl~~i~~~~~~ 138 (148)
T 3vou_A 123 LEVMEKLEAIEKKLAE 138 (148)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444556555555443
No 19
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=32.37 E-value=1e+02 Score=24.55 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=14.0
Q ss_pred hhhHhHHHHHHHHHHHHHHH
Q 017057 248 QKEQDIKIMEAEVQALEELS 267 (378)
Q Consensus 248 ~~~~~i~~Lq~EI~~Le~l~ 267 (378)
...+||++|+.||+.||.+.
T Consensus 51 eL~~EI~~L~~eI~~LE~iq 70 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQ 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888777663
No 20
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.14 E-value=1.1e+02 Score=21.79 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r 283 (378)
+.+..|+.++..|++-...|-.++..|+.+...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777777765543
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.35 E-value=3.2e+02 Score=28.07 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=18.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017057 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (378)
Q Consensus 249 ~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r~~ 285 (378)
...+|..|+.||+.--+.-+.|-..|.+++...+|-+
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667776665433334444444444444444433
No 22
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=30.22 E-value=4.1e+02 Score=26.35 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 186 ESEIKALERQLMQSIETCIAKKKKIILCQME 216 (378)
Q Consensus 186 e~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 216 (378)
+.||+.+|..+++..+.--+-++.+..++..
T Consensus 37 ~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 37 DKDLQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 4478888877776655444444444444443
No 23
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=28.35 E-value=1.3e+02 Score=19.68 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 252 DIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (378)
Q Consensus 252 ~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~r 283 (378)
.+++|+.++..|..=...|-+|+..|+.....
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 34677777777666667777777777665543
No 24
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=27.26 E-value=1.2e+02 Score=18.91 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 252 DIKIMEAEVQALEELSKQLFLEIYELRQ 279 (378)
Q Consensus 252 ~i~~Lq~EI~~Le~l~~~L~~el~~L~~ 279 (378)
+.++|+.|++.-|.=..||-.|+..|+.
T Consensus 2 evaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3467777777777777777777666553
No 25
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.84 E-value=98 Score=21.77 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=26.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (378)
Q Consensus 249 ~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~ 282 (378)
+..+...|++|.+.|+.=-..|-.+..+++.+.+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788999999888888888888888877654
No 26
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.48 E-value=1.2e+02 Score=23.72 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 252 DIKIMEAEVQALEELSKQLFLEIYELRQA 280 (378)
Q Consensus 252 ~i~~Lq~EI~~Le~l~~~L~~el~~L~~~ 280 (378)
++.+++.|+..|+.=+..+..+|.++...
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke 33 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKN 33 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666666666666665543
No 27
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.07 E-value=42 Score=20.17 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=10.3
Q ss_pred hhhHhHHHHHHHHHHHH
Q 017057 248 QKEQDIKIMEAEVQALE 264 (378)
Q Consensus 248 ~~~~~i~~Lq~EI~~Le 264 (378)
..+++|++|++.|++|+
T Consensus 11 aleqkiaalkqkiaslk 27 (28)
T 3ra3_A 11 ALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34556666776666553
No 28
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.04 E-value=1.4e+02 Score=21.30 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~~ 282 (378)
+.+..|+.++..|++-...|-.++..|+.+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888877776543
No 29
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.91 E-value=1.1e+02 Score=22.78 Aligned_cols=33 Identities=39% Similarity=0.475 Sum_probs=23.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAK 281 (378)
Q Consensus 249 ~~~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~ 281 (378)
..+.|+.|+.++..||....++-.|...|+...
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i 59 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLENDQLRQKV 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888887777766666665443
No 30
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.87 E-value=80 Score=18.82 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017057 268 KQLFLEIYELRQAKEAA 284 (378)
Q Consensus 268 ~~L~~el~~L~~~~~r~ 284 (378)
.+||.|+.+|+.+.+.-
T Consensus 4 delykeledlqerlrkl 20 (27)
T 3twe_A 4 DELYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45777777887665543
No 31
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=25.21 E-value=2.8e+02 Score=22.60 Aligned_cols=71 Identities=10% Similarity=0.121 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhccchhhhccccccccCcchhhHhHHHHHHHHHHHHHHH
Q 017057 188 EIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELS 267 (378)
Q Consensus 188 dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~~i~~Lq~EI~~Le~l~ 267 (378)
+|..+|..+...-.-|..-|.|+..+++..+.+-.. .++ + + +.+-+.++++||+--
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDe--vNK-~---------t------------l~~R~~~Vs~lq~Ki 78 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDE--LNK-R---------T------------LTDREGVAVSIQAKI 78 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHH-H---------H------------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH--HHH-H---------H------------HHHHHHHHHHHHHHH
Confidence 455555555555445555567777777665542111 010 0 0 123356677777666
Q ss_pred HHHHHHHHHHHHHHH
Q 017057 268 KQLFLEIYELRQAKE 282 (378)
Q Consensus 268 ~~L~~el~~L~~~~~ 282 (378)
.+|-..|.+.....+
T Consensus 79 aeLKrqLAd~va~~k 93 (113)
T 4fi5_A 79 DELKRQLADRIATGK 93 (113)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcc
Confidence 666666666555433
No 32
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.29 E-value=1.1e+02 Score=20.44 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=16.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Q 017057 250 EQDIKIMEAEVQALEELSKQLFLEI 274 (378)
Q Consensus 250 ~~~i~~Lq~EI~~Le~l~~~L~~el 274 (378)
.|+.+.|+.|+++||.--..+-..+
T Consensus 19 peelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 19 PEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888998888776544444333
No 33
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=23.46 E-value=1.5e+02 Score=22.76 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017057 255 IMEAEVQALEELSKQLFLEIY 275 (378)
Q Consensus 255 ~Lq~EI~~Le~l~~~L~~el~ 275 (378)
.++-|++.+.+-.+++|.|+.
T Consensus 45 ~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 45 ENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555544
No 34
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.72 E-value=1.1e+02 Score=22.19 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 281 (378)
Q Consensus 251 ~~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~ 281 (378)
+.+..|+.++..|+.-...|-.++..|+.+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888887654
No 35
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.05 E-value=93 Score=24.76 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=7.4
Q ss_pred ccCchHHHHHHH
Q 017057 286 YSRTWRGHMQNL 297 (378)
Q Consensus 286 ~s~T~~Gr~~~~ 297 (378)
.+|++++|...+
T Consensus 72 ~aK~LRnKA~~L 83 (96)
T 1t3j_A 72 NSKLLRNKAVQL 83 (96)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 456778776543
No 36
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=20.69 E-value=1.2e+02 Score=19.87 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=13.7
Q ss_pred ccCHHHHHHHHHHHHHH
Q 017057 183 EIDESEIKALERQLMQS 199 (378)
Q Consensus 183 ~Vte~dI~~~e~~l~~t 199 (378)
.|||.||.+-|.+...+
T Consensus 6 ~Vte~DIr~QE~rV~~a 22 (36)
T 2l2l_B 6 IVTDEDIRKQEERVQQV 22 (36)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHH
Confidence 48999999988776654
No 37
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.66 E-value=2e+02 Score=20.61 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017057 252 DIKIMEAEVQALEELSKQLFLEIYELRQAK 281 (378)
Q Consensus 252 ~i~~Lq~EI~~Le~l~~~L~~el~~L~~~~ 281 (378)
++..|+.|+..|+.-..+|-.++..|+.+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666665555543
Done!