BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017058
(378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp.
japonica GN=CAO PE=2 SV=1
Length = 541
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/376 (82%), Positives = 338/376 (89%), Gaps = 3/376 (0%)
Query: 1 MEALVNDRLLQDRHTSGTDQTCAS--PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLK 58
ME LVNDRLLQD +S + C S PSTS S +V K PR+SLNVSGPVQPYN LK
Sbjct: 159 METLVNDRLLQDGGSSASTAECTSLAPSTSSAS-RVVNKKPPRRSLNVSGPVQPYNPSLK 217
Query: 59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR 118
NFW+PVAFS+DLKDDTMVP DCFEE WVIFRGKDG PGCV NTCAHRACPLHLGSVNEGR
Sbjct: 218 NFWYPVAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGR 277
Query: 119 IQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPP 178
IQCPYHGWEYSTDGKCEKMPST++ NV+I+SLPCFEQEGM+WIWPG++PP +TIP LLPP
Sbjct: 278 IQCPYHGWEYSTDGKCEKMPSTKMLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPP 337
Query: 179 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGY 238
SGF IHAEIVMELP+EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTP+SGLQGY
Sbjct: 338 SGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGY 397
Query: 239 WDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRM 298
WDPYPIDMEFRPPCMVLSTIGISKPGKLEG++T+QC+THLHQLH+CLPSSR KTRLLYRM
Sbjct: 398 WDPYPIDMEFRPPCMVLSTIGISKPGKLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRM 457
Query: 299 SLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRY 358
SLDFA +KHVPFM LW HFAE+VLNEDLRLVLGQQERM NGANVWN PV YDKLG+RY
Sbjct: 458 SLDFAPWIKHVPFMHILWSHFAEKVLNEDLRLVLGQQERMINGANVWNWPVSYDKLGIRY 517
Query: 359 RLWRDALEKGAKQLPF 374
RLWRDA+E+G +LPF
Sbjct: 518 RLWRDAIERGVDRLPF 533
>sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=CAO PE=1 SV=1
Length = 536
Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust.
Identities = 293/374 (78%), Positives = 329/374 (87%)
Query: 1 MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNF 60
ME LVNDRLL R + D+ +S + S LD K KSLNVSGPV PY+ LKNF
Sbjct: 161 MEELVNDRLLPGRVVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNF 220
Query: 61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
W+PVAF+ DLK DTMVP +CFE+PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQ
Sbjct: 221 WYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQ 280
Query: 121 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSG 180
CPYHGWEYSTDG+C+KMPST+L VKIKSLPC EQEGMIWIWPGDEPP +P L PPSG
Sbjct: 281 CPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSG 340
Query: 181 FEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240
F IHAE+VM+LP+EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTP SGLQGYWD
Sbjct: 341 FLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWD 400
Query: 241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSL 300
PYPIDMEF+PPC+VLSTIGISKPGKLEG++T+QCATHLHQLHVCLPSS+ KTRLLYRMSL
Sbjct: 401 PYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSL 460
Query: 301 DFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRL 360
DFA +LK++PFM++LWRHFAEQVLNEDLRLVLGQQERM NGAN+WNLPV YDKLGVRYRL
Sbjct: 461 DFAPILKNLPFMEHLWRHFAEQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRL 520
Query: 361 WRDALEKGAKQLPF 374
WR+A+++G +LPF
Sbjct: 521 WRNAVDRGDDKLPF 534
>sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas
reinhardtii GN=CAO PE=2 SV=2
Length = 645
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 186/312 (59%), Positives = 231/312 (74%), Gaps = 4/312 (1%)
Query: 57 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 116
L+NFW+P FS L DT+VPF+ F EPWV+FR + G P C+++ CAHR CPL LG V E
Sbjct: 301 LRNFWYPAEFSARLPKDTLVPFELFGEPWVMFRDEKGQPSCIRDECAHRGCPLSLGKVVE 360
Query: 117 GRIQCPYHGWEYSTDGKCEKMPSTQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 175
G++ CPYHGWE++ DG C KMPST RNV + +LPC E++G IW+WPGD P T+P
Sbjct: 361 GQVMCPYHGWEFNGDGACTKMPSTPFCRNVGVAALPCAEKDGFIWVWPGDGLPAETLPDF 420
Query: 176 L-PPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASG 234
PP GF IHAEI++++P+EHGLL++NLLDLAHAPFTHTSTFA+GW VP VKF
Sbjct: 421 AQPPEGFLIHAEIMVDVPVEHGLLIENLLDLAHAPFTHTSTFARGWPVPDFVKFHA-NKA 479
Query: 235 LQGYWDPYPIDMEFRPPCMVLSTIGISKPGK-LEGQNTRQCATHLHQLHVCLPSSRKKTR 293
L G+WDPYPIDM F+PPCM LSTIG+++PGK + G QC HLHQLHVC+PS + TR
Sbjct: 480 LSGFWDPYPIDMAFQPPCMTLSTIGLAQPGKIMRGVTASQCKNHLHQLHVCMPSKKGHTR 539
Query: 294 LLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDK 353
LLYRMSLDF ++HVPF+ +W+ A QVL EDL LVLGQQ+RM G + W+ P YDK
Sbjct: 540 LLYRMSLDFLPWMRHVPFIDRIWKQVAAQVLGEDLVLVLGQQDRMLRGGSNWSNPAPYDK 599
Query: 354 LGVRYRLWRDAL 365
L VRYR WR+ +
Sbjct: 600 LAVRYRRWRNGV 611
>sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina
GN=CAO PE=2 SV=1
Length = 463
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/356 (51%), Positives = 237/356 (66%), Gaps = 5/356 (1%)
Query: 16 SGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTM 75
SG T + S + +G P+ S + ++ L+NFW+P F+ L+ M
Sbjct: 90 SGMASTSYPSHVPQPSQAVRRGPKPKDSRRLRSSLE-LEDGLRNFWYPTEFAKKLEPGMM 148
Query: 76 VPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCE 135
VPFD F PWV+FR + P C++++CAHRACPL LG V G +QCPYHGWE+ G C
Sbjct: 149 VPFDLFGVPWVLFRDEHSAPTCIKDSCAHRACPLSLGKVINGHVQCPYHGWEFDGSGACT 208
Query: 136 KMPSTQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL-LPPSGFEIHAEIVMELPI 193
KMPST++ V + +LPC E++G +W+WPGD PP P PP+G+++HAEI++++P+
Sbjct: 209 KMPSTRMCHGVGVAALPCVEKDGFVWVWPGDGPPPDLPPDFTAPPAGYDVHAEIMVDVPV 268
Query: 194 EHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCM 253
EHGLL++NLLDLAHAPFTHT+TFA+GW +P V+F L G WDPYPI M F PPC+
Sbjct: 269 EHGLLMENLLDLAHAPFTHTTTFARGWPIPEAVRFHA-TKMLAGDWDPYPISMSFNPPCI 327
Query: 254 VLSTIGISKPGK-LEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFM 312
LSTIG+S+PGK + G +C HLHQLHVC+PS TRLLYRMSLDF KHVPF+
Sbjct: 328 ALSTIGLSQPGKIMRGYKAEECKRHLHQLHVCMPSKEGHTRLLYRMSLDFWGWAKHVPFV 387
Query: 313 QYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKG 368
LW+ A QVL EDL LVLGQQ RM G + W P+ YDKL VRYR WR+ + G
Sbjct: 388 DVLWKKIAGQVLGEDLVLVLGQQARMIGGDDTWCTPMPYDKLAVRYRRWRNMVADG 443
>sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2
SV=1
Length = 539
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 150/334 (44%), Gaps = 39/334 (11%)
Query: 61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
W+P+ + ++ +D + ++ V+++ +G C ++ C HR L G + +GR++
Sbjct: 88 WYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLE 147
Query: 121 CPYHGWEYSTDGKCEKMP----STQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 175
C YHGW++ +GKC K+P S ++ + +K+ + +G++W+W + P P
Sbjct: 148 CLYHGWQFEGEGKCVKIPQLPASAKIPKAACVKTYEVKDSQGVVWVWMSTKTPPN--PEK 205
Query: 176 LP-------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST--FAKGWSVPSLV 226
LP P F+I ELP +H +LL+NL+D AH P +H T AK LV
Sbjct: 206 LPWFENFARPGFFDI--STTHELPYDHSILLENLMDPAHVPISHDRTDFTAKREDAQPLV 263
Query: 227 KFLTPAS--GLQGYWDPYPID------MEFRPPCMVLSTIGISKPGKLEGQNTRQCATHL 278
+T S G G W + F PC++ + + EG++ +
Sbjct: 264 FEVTERSNRGFAGTWGREKEGGKGSNLLRFDAPCVLQNN------REFEGKDG--VKNYF 315
Query: 279 HQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQE-R 337
L +C P+ + K+ L+ R + S L V Q+ W A +V +D+ + Q E
Sbjct: 316 SGLFLCRPTGQGKSMLIVRFGVTKRSPLVSV-LPQWFWHQNACKVFEQDMGFLSSQNEVL 374
Query: 338 MNNGANVWNLPVGY---DKLGVRYRLWRDALEKG 368
M +L + D YR W D + G
Sbjct: 375 MKEKVPTKDLYLNLKSSDTWVAEYRKWMDKVGHG 408
>sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1
Length = 553
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 149/332 (44%), Gaps = 36/332 (10%)
Query: 61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 120
W+P+ + ++ D + +++ V+FR + C ++ C HR L G + +GR++
Sbjct: 103 WYPLYLTKNVPHDAPLGLKVYDKNIVLFRDGNDQFQCYEDRCPHRLAKLSEGQLIDGRLE 162
Query: 121 CPYHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP--TATIP 173
C YHGW++ +GKC K+P ++ +K+ + +G++W+W + P + IP
Sbjct: 163 CLYHGWQFEGEGKCVKIPQLPADAKIPKSACVKTYEVRDSQGVLWVWMSRKTPPNVSKIP 222
Query: 174 CL--LPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST--FAKGWSVPSLVKFL 229
GF+ ELP +H +LL+NL+D AH P +H T AK +L +
Sbjct: 223 WFENFARPGFQ-DISTTHELPYDHSILLENLMDPAHVPISHDRTDWSAKREDAQALGFEV 281
Query: 230 TPAS--GLQGYW-----DPYPIDMEFRPPCMVLSTIGI-SKPGKLEGQNTRQCATHLHQL 281
T + G G+W P + F PC++ + I K G++ H L
Sbjct: 282 TERTDRGFAGWWGREKDGSKPNFLRFEAPCVLQNNREIVDKNGEI---------NHFSGL 332
Query: 282 HVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQ-----QE 336
+C P+ + K+ L+ R S L + F ++ + A +V +D+ + Q +E
Sbjct: 333 FLCRPTGQGKSMLIVRFGATKRSPLIKL-FPEWYFHQNASKVFEQDMGFLSSQNEILLKE 391
Query: 337 RMNNGANVWNLPVGYDKLGVRYRLWRDALEKG 368
++ NL D YR W D + G
Sbjct: 392 KVPTKELYLNLKSS-DTWVAEYRKWMDKVGHG 422
>sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain ATCC 19151) GN=vanA PE=3 SV=1
Length = 329
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 96/217 (44%), Gaps = 39/217 (17%)
Query: 83 EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL 142
E VI+RG +++ C HR PL LGS+ +G++ C YHG DG+ MP+ ++
Sbjct: 5 ERMVIYRGAGQRVAALEDFCPHRGAPLSLGSIQDGKLVCGYHGLVMDCDGRTASMPAQRV 64
Query: 143 RNVK-IKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFE-----IHAEIVMELPIEHG 196
+ I++ P E+ G IW+WPGD P L+P + + + + ++
Sbjct: 65 QAFPCIRAFPAQERHGFIWVWPGD--AALADPALIPHLEWAENPAWAYGGGLYHIACDYR 122
Query: 197 LLLDNLLDLAHAPFTHTST------------------------FAKGWSVPSLVKFLTPA 232
L++DNL+DL H + H S+ F +G P +
Sbjct: 123 LMIDNLMDLTHETYVHASSIGQKEIDEAPVSTRVEGDRLITGRFMEGILAPPFWRAALRG 182
Query: 233 SGLQGYWDPYPIDM----EFRPPCMVLSTIGISKPGK 265
+GL D P+D F PP VL +G++ G+
Sbjct: 183 NGLA---DDVPVDRWQICRFTPPSHVLIEVGVAHAGR 216
>sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain HR199 / DSM 7063) GN=vanA PE=3 SV=1
Length = 354
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 103/239 (43%), Gaps = 34/239 (14%)
Query: 58 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 117
KN W+ VA + D D + E V +RG +G V++ C HR PL LG V +G
Sbjct: 4 KNAWY-VACTPDEIADKPLGRQICNEKIVFYRGPEGRVAAVEDFCPHRGAPLSLGFVRDG 62
Query: 118 RIQCPYHGWEYSTDGKCEKMPSTQLRNVK-IKSLPCFEQEGMIWIWPGDEPPTATIPCLL 176
++ C YHG E +GK MP +++ IKS E+ G IW+WPGD P L+
Sbjct: 63 KLICGYHGLEMGCEGKTLAMPGQRVQGFPCIKSYAVEERYGFIWVWPGDR--ELADPALI 120
Query: 177 PPSGFEIHAEI-----VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVK---- 227
+ + E + + ++ L++DNL+DL H + H S+ + + V
Sbjct: 121 HHLEWADNPEWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIGQKEIDEAPVSTRVE 180
Query: 228 -----------------FLTPASGLQGYWDPYPIDM----EFRPPCMVLSTIGISKPGK 265
F A G D P+D F PP VL +G++ GK
Sbjct: 181 GDTVITSRYMDNVMAPPFWRAALRGNGLADDVPVDRWQICRFAPPSHVLIEVGVAHAGK 239
>sp|P94679|TSAM1_COMTE Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1
OS=Comamonas testosteroni GN=tsaM1 PE=1 SV=1
Length = 347
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 57 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 116
++N W+ A+ T++ + + EP +++R G ++N C HR+ PLH+G
Sbjct: 3 IRNCWYVAAWDTEIPAEGLFHRTLLNEPVLLYRDTQGRVVALENRCCHRSAPLHIGRQEG 62
Query: 117 GRIQCPYHGWEYSTDGKCEKMPSTQLRNVK--IKSLPCFEQEGMIWIWPGDEPPTATIPC 174
++C YHG +++ G C ++P + K IKS P E+ ++WIW GD P P
Sbjct: 63 DCVRCLYHGLKFNPSGACVEIPGQEQIPPKTCIKSYPVVERNRLVWIWMGD--PARANPD 120
Query: 175 LLPPSGFEIHAEIVME-----LPIEHGLLLDNLLDLAHAPFTHTSTFA 217
+ + E M+ + L++DNLLD H + H +T
Sbjct: 121 DIVDYFWHDSPEWRMKPGYIHYQANYKLIVDNLLDFTHLAWVHPTTLG 168
>sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas
testosteroni GN=cbaA PE=3 SV=1
Length = 432
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 13/177 (7%)
Query: 48 GPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA 106
G P ++ +W P ST+L+ + V E V FR G G + + C HR
Sbjct: 14 GRGTPMGGLMREYWIPALKSTELEAGGSPVRLLLLGEKLVAFREPSGAVGVMDSRCPHRG 73
Query: 107 CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST----QLRN-VKIKSLPCFEQEGMIWI 161
L +G V EG ++C YHGW++S +GKC MPS + +N V++ P E G++W+
Sbjct: 74 VSLFMGRVEEGGLRCVYHGWKFSAEGKCVDMPSVRPEDEFKNSVRVARYPVKEMAGVVWV 133
Query: 162 WPGDEPPTATIPCL----LPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTS 214
+ G +P L LP + ++ I ++ L+ +D +H F H
Sbjct: 134 YMGTRKVLPELPRLEVLNLPENEVDV---ICLQRKSNWLQNLEGEIDTSHFNFLHVG 187
>sp|Q9AHG3|TSAM2_COMTE Putative toluene-4-sulfonate monooxygenase system iron-sulfur
subunit TsaM2 OS=Comamonas testosteroni GN=tsaM2 PE=5
SV=1
Length = 346
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 57 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 116
+KN W+ +TD + E V+FR DG +++ C HR PL LG V +
Sbjct: 3 VKNTWYVAGMATDCSRKPLAR-TFLNEKVVLFRTHDGHAVALEDRCCHRLAPLSLGDVED 61
Query: 117 GRIQCPYHGWEYSTDGKCEKMPSTQLR--NVKIKSLPCFEQEGMIWIWPGDEPPTAT--- 171
I+C YHG ++ G C ++P + + ++ P E+ G++WIW GD P A
Sbjct: 62 AGIRCRYHGMVFNASGACVEIPGQEQIPPGMCVRRFPLVERHGLLWIWMGD-PARANPDD 120
Query: 172 --------IPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 217
P SG+ IH + + L++DNLLD H + H +T
Sbjct: 121 IVDELWNGAPEWRTDSGY-IHYQ------ANYQLIVDNLLDFTHLAWVHPTTLG 167
>sp|Q8W496|PTC52_ARATH Protochlorophyllide-dependent translocon component 52,
chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1
Length = 559
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/394 (21%), Positives = 148/394 (37%), Gaps = 91/394 (23%)
Query: 61 WFPVAFSTDLKD-----------DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL 109
W+PV DL D +V +D E+ W + + +TC HR PL
Sbjct: 85 WYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKV----------MDDTCPHRLAPL 134
Query: 110 HLGSVNE-GRIQCPYHGWEYSTDGKCEKMPST--------QLRNVKIKSLPCFEQEGMIW 160
G +++ GR+QC YHGW ++ G C+ +P + + P Q +IW
Sbjct: 135 SDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPSTVQHEIIW 194
Query: 161 IWPGDEPPTAT---------IPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFT 211
WP +P IP L PS ++ ++P + +L++NL+D AH P+
Sbjct: 195 FWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGN--RDIPYGYDVLVENLMDPAHVPYA 252
Query: 212 HTSTFA----KGWSVPSLVKF-LTPASGLQGYW---------DPYPIDME---------- 247
H KG + + P + LQ P I+++
Sbjct: 253 HYGLMRFPKPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINVKKLDNKGFFSK 312
Query: 248 -------FRPPCMVLSTIG------ISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRL 294
F PC+ S+ P L + +C+P S ++RL
Sbjct: 313 QEWGYSNFIAPCVYRSSTDPLPEQEHEYPAPAASDKAALSKRRLSLIFICIPVSPGRSRL 372
Query: 295 LYRMSLDFASVL-KHVPFMQYLWRHFAEQVLNEDLRLVLGQQER-MNNGANVWN----LP 348
++ +F + K VP ++++ +L+ DL L+ ++ + + G W +P
Sbjct: 373 IWTFPRNFGVFIDKIVP--RWVFHIGQNTILDSDLHLLHVEERKILERGPENWQKACFIP 430
Query: 349 VGYDKLGVRYRLWRDALEKG-----AKQLPFMKP 377
D V +R W + + K PF+ P
Sbjct: 431 TKSDANVVTFRRWFNKYSEARVDWRGKFDPFLLP 464
>sp|Q52185|POBA_PSEPS Phenoxybenzoate dioxygenase subunit alpha OS=Pseudomonas
pseudoalcaligenes GN=pobA PE=2 SV=1
Length = 409
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 25/220 (11%)
Query: 40 PRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQ 99
P L+ P L+ +W PVA S D+ D + E V+FR K G PG +
Sbjct: 24 PDPQLSAVAKGTPTGEYLRRYWQPVALSADVTDRPQM-VRILGEDLVLFRDKAGRPGLLY 82
Query: 100 NTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKM---PSTQLRNVKIKS--LPCFE 154
C HR L+ G V E I+C YHGW ++ DG C P LR + P E
Sbjct: 83 PRCMHRGTSLYYGHVEEAGIRCCYHGWLFAVDGTCLNQPCEPEGGLRREAARQPWYPVEE 142
Query: 155 QEGMIWIWPGDEPPTATIP-------------CLLPPSGFEIHAEIVMELPIEHGLLL-- 199
+ G+++ + G +P + GF +A+ V + + + L
Sbjct: 143 RYGLVFAYMGPPEKKPVLPRYDILEDLEEGEFIEVISGGFVSYADHVEDPNVPYHWLQNW 202
Query: 200 DNLLDLAHAPFTHTS----TFAKGWSVPSLVKFLTPASGL 235
+N++D H H++ FA+ + + V F G+
Sbjct: 203 ENIMDPYHVYILHSTFSGIQFAENFKILPRVDFEAVDGGV 242
>sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=PAO PE=1 SV=1
Length = 537
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 29/230 (12%)
Query: 56 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSV 114
+ ++ W+PV+ DL + PF V+ F D + C HR PL G +
Sbjct: 83 KWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRL 142
Query: 115 NE-GRIQCPYHGWEYSTDGKCEKMPST-----QLRNVK-----IKSLPCFEQEGMIWIWP 163
+E G +QC YHGW + G C ++P + R VK P +G++++WP
Sbjct: 143 DENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIKFPTMVSQGLLFVWP 202
Query: 164 GD---------EPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTH-- 212
+ EPP +P F I +L + L++N+ D +H F H
Sbjct: 203 DENGWDRANSIEPP--RLPDDFDKPEFST-VTIQRDLFYGYDTLMENVSDPSHIDFAHHK 259
Query: 213 -TSTFAKGWSVPSLVKFLTPASGLQGYWDPYP-IDMEFRPPCMVLSTIGI 260
T + +P V+ P G QG D P I +F PC ++ I +
Sbjct: 260 VTGRRDRAKPLPFKVESSGPW-GFQGANDDSPRITAKFVAPCYSMNKIEL 308
>sp|Q05183|PHT3_PSEPU Phthalate 4,5-dioxygenase oxygenase subunit OS=Pseudomonas putida
GN=pht3 PE=2 SV=1
Length = 439
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 10/135 (7%)
Query: 52 PYNTRLKNFWFPVAFSTDLK--DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL 109
P ++ W PV ++ D T V F E V+FR DG G + C HR L
Sbjct: 18 PMGQMMRRHWTPVCLLEEVSEPDGTPVRARLFGEDLVVFRDTDGRVGVMDEYCPHRRVSL 77
Query: 110 HLGSVNEGRIQCPYHGWEYSTDGKCEKM-----PSTQLRNVKIKSLPCFEQEGMIWIWPG 164
G ++C YHGW+ DG +M S + VK + E G +W + G
Sbjct: 78 IYGRNENSGLRCLYHGWKMDVDGNVVEMVSEPAASNMCQKVKHTAYKTREWGGFVWAYMG 137
Query: 165 DEPPTATIPCLLPPS 179
P IP +PP+
Sbjct: 138 ---PQDAIPEFVPPA 149
>sp|D5IGG0|CARAA_SPHSX Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Sphingomonas sp. GN=carAa PE=1 SV=1
Length = 378
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 57 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL--HLGSV 114
+N W+PV ++++ + T VP E ++ G +Q+ C HR L +
Sbjct: 25 FRNHWYPVRLASEIAEGTPVPVKLLGEK-ILLNRVGGKVYAIQDRCLHRGVTLSDRVECY 83
Query: 115 NEGRIQCPYHGWEYS-TDGKCEKM----PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPT 169
++ I C YHGW Y DG+ + S Q+ +K+ P E +G+I+++ GD PT
Sbjct: 84 SKNTISCWYHGWTYRWDDGRLVDILTNPGSVQIGRRALKTFPVEEAKGLIFVYVGDGEPT 143
Query: 170 ATIPCLLPPSGF-----EIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG 219
I + P GF IH + + + L +N D H S KG
Sbjct: 144 PLIEDV--PPGFLDENRAIHGQHRL-VASNWRLGAENGFDAGHVLIHKNSILVKG 195
>sp|Q17938|DAF36_CAEEL Cholesterol desaturase daf-36 OS=Caenorhabditis elegans GN=daf-36
PE=1 SV=2
Length = 428
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 13/194 (6%)
Query: 59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNE 116
N W+ V S L ++ ++ + + R + G + C H ++G V +
Sbjct: 79 NGWYCVCESEKLANNQIMEITVLGQFLSLIRSESGAVYITDSYCPHIGANFNIGGRVVRD 138
Query: 117 GRIQCPYHGWEYSTD-GKCEKMPSTQLR---NVKIKSLPCFEQEGMIWIW---PGDEPPT 169
IQCP+HGW +S + GKC ++P + R K+ + PC E+ I++W G EP
Sbjct: 139 NCIQCPFHGWIFSAETGKCVEVPYDEGRIPEQAKVTTWPCIERNNNIYLWYHCDGAEPEW 198
Query: 170 ATIPCLLPPSGF-EIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST--FAKGWSVPSLV 226
GF + E+ + +N D+AH + H S KG +
Sbjct: 199 EIPEITEITDGFWHLGGRTEHEVMCHIQEIPENGADIAHLNYLHKSAPPVTKGSDIIK-T 257
Query: 227 KFLTPASGLQGYWD 240
P +Q WD
Sbjct: 258 DLSDPQPAVQHVWD 271
>sp|P71875|KSHA_MYCTU 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium tuberculosis GN=kshA PE=1 SV=2
Length = 386
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 9/167 (5%)
Query: 55 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 114
TR W + + D + + F V+F G + C H L G+V
Sbjct: 20 TRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTV 79
Query: 115 NEGRIQCPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDE----PP 168
+ CP+H W + DG+C+ +P + R + +S + G++++W E P
Sbjct: 80 KGDEVACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDP 139
Query: 169 TATIPCLLPPSGFEIHAEIVMELPIEHGL---LLDNLLDLAHAPFTH 212
IP + + E + IE ++DN+ D+AH + H
Sbjct: 140 AVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTDMAHFFYIH 186
>sp|Q8G8B6|CARAA_PSERE Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Pseudomonas resinovorans GN=carAa PE=1 SV=1
Length = 384
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 57 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SV 114
+N W+PV FS ++ + E ++ R DG C+++ C HR L +
Sbjct: 25 FRNHWYPVMFSKEIDEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECK 83
Query: 115 NEGRIQCPYHGWEYS-TDGK-CEKM---PSTQLRNVKIKSLPCFEQEGMIWIW--PGDEP 167
+ I C YH W Y DG C+ + S Q+ K+K+ P E +G ++I+ GD P
Sbjct: 84 TKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP 143
Query: 168 PTATIPCLLPPSGFEIHAEIVMELPIEHG---LLLDNLLDLAHAPFTHTSTFAK 218
P A PP+ + EI+ + I L ++N D +H S K
Sbjct: 144 PLARD---TPPNFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSILVK 194
>sp|P0ABR7|YEAW_ECOLI Putative dioxygenase subunit alpha YeaW OS=Escherichia coli (strain
K12) GN=yeaW PE=3 SV=1
Length = 374
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 28/170 (16%)
Query: 61 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR- 118
W VA S++L + + V + E V+ RG+D + N C HR L G EG+
Sbjct: 47 WICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSG---EGKA 103
Query: 119 ---IQCPYHGWEYSTDG------KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPT 169
I CPYH W + DG CE + + ++ + E G ++I +P
Sbjct: 104 KNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFI--NMDPNA 161
Query: 170 ATIPCLLPPSGF-------EIH-----AEIVMELPIEHGLLLDNLLDLAH 207
++ LP G E+H A P ++DN L+ H
Sbjct: 162 TSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTPANWKNIVDNYLECYH 211
>sp|P0ABR8|YEAW_ECO57 Putative dioxygenase subunit alpha YeaW OS=Escherichia coli O157:H7
GN=yeaW PE=3 SV=1
Length = 374
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 28/170 (16%)
Query: 61 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR- 118
W VA S++L + + V + E V+ RG+D + N C HR L G EG+
Sbjct: 47 WICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSG---EGKA 103
Query: 119 ---IQCPYHGWEYSTDG------KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPT 169
I CPYH W + DG CE + + ++ + E G ++I +P
Sbjct: 104 KNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFI--NMDPNA 161
Query: 170 ATIPCLLPPSGF-------EIH-----AEIVMELPIEHGLLLDNLLDLAH 207
++ LP G E+H A P ++DN L+ H
Sbjct: 162 TSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTPANWKNIVDNYLECYH 211
>sp|A0R4R3|KSHA_MYCS2 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=kshA PE=1 SV=1
Length = 383
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 86 VIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL--R 143
V+F G + C H L G+V + CP+H W + DGKC+ +P + R
Sbjct: 49 VVFADSKGELNVLDAYCRHMGGDLSKGTVKGDEVACPFHDWRWGGDGKCKLVPYAKRTPR 108
Query: 144 NVKIKSLPCFEQEGMIWIWPGDE----PPTATIPCLLPPSGFEIHAEIVMELPIEHG--- 196
+ +S + G++++W E P IP + E + IE
Sbjct: 109 LARTRSWHTDVRGGLLFVWHDHEGNPPQPEVRIPEIPEWHSGEWTDWKWNSMLIEGSNCR 168
Query: 197 LLLDNLLDLAHAPFTH 212
++DN+ D+AH + H
Sbjct: 169 EIIDNVTDMAHFFYIH 184
>sp|O22553|CHMO_BETVU Choline monooxygenase, chloroplastic OS=Beta vulgaris GN=CMO PE=2
SV=1
Length = 446
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 85 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP-STQLR 143
+++ R G N C HRA L GS + CPYHGW Y DG K +T+ +
Sbjct: 152 YLVSRDGQGELHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLAKASKATETQ 211
Query: 144 NVKIKSL 150
N+ K L
Sbjct: 212 NLDPKEL 218
>sp|O04121|CHMO_SPIOL Choline monooxygenase, chloroplastic OS=Spinacia oleracea GN=CMO
PE=1 SV=1
Length = 439
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 85 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 136
+++ R +G N C HRA L GS + CPYHGW Y DG K
Sbjct: 145 YLVSRDGEGKVHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGMDGSLAK 196
>sp|Q93XE1|CHMO_AMATR Choline monooxygenase, chloroplastic OS=Amaranthus tricolor GN=CMO
PE=2 SV=1
Length = 442
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 85 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRN 144
+++ R G N C HRA L G+ + CPYHGW + DG K T+ +
Sbjct: 148 YLVCRDGQGKVHAFHNVCTHRASILACGTGKKSCFVCPYHGWVFGLDGSLMKATKTENQV 207
Query: 145 VKIKSLPCFEQEGMIW 160
K L + IW
Sbjct: 208 FDPKELGLVTLKVAIW 223
>sp|Q83K39|HCAE_SHIFL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri GN=hcaE PE=3 SV=1
Length = 453
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 138
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNSRAFTCPYHGWSYGINGELIDVP 122
>sp|Q7N4W0|HCAE_PHOLL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=hcaE PE=3 SV=1
Length = 453
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138
E+ V+ R K+G N C HR+ + + S N CPYHGW Y DG+ +P
Sbjct: 65 EDSVVVVRQKNGSVKAFLNQCRHRSMRVCYADSGNTRAFTCPYHGWSYGVDGRLIDVP 122
>sp|A8A344|HCAE_ECOHS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O9:H4 (strain HS) GN=hcaE PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 138
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q0T1Y1|HCAE_SHIF8 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri serotype 5b (strain 8401) GN=hcaE
PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 138
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q3YZ15|HCAE_SHISS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella sonnei (strain Ss046) GN=hcaE PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 138
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|P0ABR5|HCAE_ECOLI 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli (strain K12) GN=hcaE PE=1 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 138
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|P0ABR6|HCAE_ECO57 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O157:H7 GN=hcaE PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 138
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q9LKN0|CHMO_ATRHO Choline monooxygenase, chloroplastic OS=Atriplex hortensis GN=CMO
PE=2 SV=1
Length = 438
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 85 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 136
+++ R +G N C HRA L GS + CPYHGW Y +G K
Sbjct: 146 YLVCRDGEGKVHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGMNGSLTK 197
>sp|Q31XV2|HCAE_SHIBS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaE
PE=3 SV=1
Length = 453
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEYSTDGKCEKMP 138
E+ V+ R KDG N C HRA + R CPYHGW Y +G+ +P
Sbjct: 65 EDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q51601|CBDA_BURCE 2-halobenzoate 1,2-dioxygenase large subunit OS=Burkholderia
cepacia GN=cbdA PE=1 SV=3
Length = 465
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 72 DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYST 130
DD +V + +P +I R K G V N C+HR L N C +HGW +S
Sbjct: 69 DDYLVS-NIGRQPVIITRNKAGDVSAVINACSHRGAELCRRKQGNRSTFTCQFHGWTFSN 127
Query: 131 DGKCEKMPSTQLRN 144
GK K+ Q N
Sbjct: 128 TGKLLKVKDGQDDN 141
>sp|P23099|XYLX_PSEPU Toluate 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=xylX
PE=3 SV=1
Length = 454
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 83 EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKM 137
+P I R KDG N C+HR L S N+ C +HGW +S GK K+
Sbjct: 73 QPIFITRNKDGELNAFVNACSHRGATLCRFRSGNKATHTCSFHGWTFSNSGKLLKV 128
>sp|P0C618|BNZA_PSEPU Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=bnzA
PE=3 SV=1
Length = 450
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 13/148 (8%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 140
E+P V+ R KD N C HR + + N C YHGW Y T G +P
Sbjct: 76 EDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVP-- 133
Query: 141 QLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLD 200
+ +S C ++ W + T L+ + E ++ L E +D
Sbjct: 134 ----YEAESFACLNKKE----WSPLKARVETYKGLIFANWDENAVDLDTYLG-EAKFYMD 184
Query: 201 NLLDLAHAPFTHTSTFAKGWSVPSLVKF 228
++LD A T + W +P KF
Sbjct: 185 HMLDRTEAG-TEAIPGVQKWVIPCNWKF 211
>sp|A5W4F2|BNZA_PSEP1 Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida (strain
F1 / ATCC 700007) GN=bnzA PE=1 SV=1
Length = 450
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 13/148 (8%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 140
E+P V+ R KD N C HR + + N C YHGW Y T G +P
Sbjct: 76 EDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVP-- 133
Query: 141 QLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLD 200
+ +S C ++ W + T L+ + E ++ L E +D
Sbjct: 134 ----YEAESFACLNKKE----WSPLKARVETYKGLIFANWDENAVDLDTYLG-EAKFYMD 184
Query: 201 NLLDLAHAPFTHTSTFAKGWSVPSLVKF 228
++LD A T + W +P KF
Sbjct: 185 HMLDRTEAG-TEAIPGVQKWVIPCNWKF 211
>sp|Q07944|BEDC1_PSEPU Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida
GN=bedC1 PE=1 SV=1
Length = 450
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 140
E+P V+ R KD N C HR + + N C YHGW Y T G +P
Sbjct: 76 EDPVVVVRQKDASIAVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDTAGNLINVP-- 133
Query: 141 QLRNVKIKSLPCFEQE 156
+ +S C +++
Sbjct: 134 ----YEAESFACLDKK 145
>sp|O85673|ANTDA_ACIAD Anthranilate 1,2-dioxygenase large subunit OS=Acinetobacter sp.
(strain ADP1) GN=antA PE=1 SV=1
Length = 471
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 71 KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYS 129
++ V +P ++ R G + N C HR L + N+ CP+H W Y
Sbjct: 62 NNNDFVTVQIGRQPMIVSRDGKGELHAMVNACEHRGATLTRVAKGNQSVFTCPFHAWCYK 121
Query: 130 TDGKCEKMPS 139
+DG+ K+ +
Sbjct: 122 SDGRLVKVKA 131
>sp|P07769|BENA_ACIAD Benzoate 1,2-dioxygenase subunit alpha OS=Acinetobacter sp. (strain
ADP1) GN=benA PE=3 SV=2
Length = 461
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 83 EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 141
+P +I R ++G + N C+HR L N+ CP+HGW ++ GK K+
Sbjct: 76 QPILIARNRNGELNAMINACSHRGAQLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPS 135
Query: 142 LRNVKIKSLPCFEQEG 157
CF Q+G
Sbjct: 136 DAGYS----DCFNQDG 147
>sp|O52379|NAGG_RALSP Salicylate 5-hydroxylase, large oxygenase component OS=Ralstonia
sp. GN=nagG PE=1 SV=1
Length = 423
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138
E ++ R DG V+N CAHR C G+ + CPYH W YS G + +P
Sbjct: 71 ERSVIMVRDPDGGINVVENVCAHRGMRFCRERHGNAKD--FFCPYHQWNYSLKGDLQGVP 128
>sp|Q9SZR0|CHMO_ARATH Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana
GN=At4g29890 PE=2 SV=2
Length = 422
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 61 WFPVAFSTDLKDDTMVPFDCF-----EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN 115
W V +S +K+ D F + +V+ R ++G N C+H A L G+
Sbjct: 96 WQAVGYSDQIKESR----DFFTGRLGDVDFVVCRDENGKIHAFHNVCSHHASILASGNGR 151
Query: 116 EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSL 150
+ C YHGW YS G K +T++ ++ SL
Sbjct: 152 KSCFVCLYHGWTYSLSGSLVK--ATRMSGIQNFSL 184
>sp|Q8GI16|CARAC_PSERE Ferredoxin CarAc OS=Pseudomonas resinovorans GN=carAc PE=1 SV=1
Length = 107
Score = 38.5 bits (88), Expect = 0.095, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 57 LKNFWFPVAFSTDLKDDTMVPFD-CFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN 115
+ W V ++D++ T+ + P ++R D ++TC H L G+++
Sbjct: 1 MNQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYA-TEDTCTHGIASLSEGTLD 59
Query: 116 EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 161
I+CP+HG ++ C MP++ V + +EG +++
Sbjct: 60 GDVIECPFHGGAFNV---CTGMPASSPCTVPLGVFEVEVKEGEVYV 102
>sp|O52382|NDOB_RALSP Naphthalene 1,2-dioxygenase subunit alpha OS=Ralstonia sp. GN=nagAc
PE=1 SV=1
Length = 447
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 86 VIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP------ 138
++ R DG N C HR L H + N C YHGW + ++G+ + +P
Sbjct: 63 IVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGSNGELQSVPFEKELY 122
Query: 139 --STQLRNVKIKSLPCFEQ-EGMIWIWPGDEPPT 169
+ + + + +K +P E G I+ E PT
Sbjct: 123 GDTIKKKCLGLKEVPRIESFHGFIYGCFDAEAPT 156
>sp|Q93SW8|UCRIB_NOSS1 Cytochrome b6-f complex iron-sulfur subunit 2 OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=petC2 PE=3 SV=1
Length = 178
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 83 EPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 140
EP + +DG P + N C H C V++ + QCP HG Y G E+ P+
Sbjct: 86 EPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQ-QFQCPCHGSRYDAQGSVERGPA- 143
Query: 141 QLRNVKIKSLPCFEQEGMIWIWPGDE 166
N +K + ++ IWI P E
Sbjct: 144 ---NRPLKLVQVQVKDDYIWISPWQE 166
>sp|Q52438|BPHA1_PSES1 Biphenyl dioxygenase subunit alpha OS=Pseudomonas sp. (strain
KKS102) GN=bphA1 PE=3 SV=1
Length = 458
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 82 EEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138
E+P ++ R KDG N C HR + + N C YHGW Y G +P
Sbjct: 81 EDPVIMVRQKDGSIKVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDIAGNLVNVP 138
>sp|Q51494|NDOB_PSEAI Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas aeruginosa
GN=ndoB PE=3 SV=1
Length = 449
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 86 VIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138
++ R DG N C HR L H + N C YHGW + +G+ + +P
Sbjct: 65 IVSRQNDGSIRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGANGELQSVP 118
>sp|Q93SW6|UCRIB_ANAVT Cytochrome b6-f complex iron-sulfur subunit 2 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=petC2 PE=3
SV=1
Length = 178
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 83 EPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 140
EP + +DG P + N C H C V++ + QCP HG Y G E+ P+
Sbjct: 86 EPTYLTVREDGTLDPMGIVNNCTHLGCTFPWNPVDQ-QFQCPCHGSRYDAQGSVERGPA- 143
Query: 141 QLRNVKIKSLPCFEQEGMIWI--WPGDEPPTATIP 173
N +K + ++ IWI W +P T P
Sbjct: 144 ---NRPLKLVHVQVKDDYIWISSWQETDPRTGEKP 175
>sp|Q65SI5|RNB_MANSM Exoribonuclease 2 OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=rnb PE=3 SV=1
Length = 659
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 267 EGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLK---HVPFMQYLWRHFAEQV 323
E ++T+Q LHQ + + RKK LL++ D++ VL HV ++ +R A Q+
Sbjct: 335 ENESTQQQINWLHQFALVRINWRKKHGLLFKEKPDYSFVLADNGHVREIKAEYRRIANQI 394
Query: 324 LNEDL---RLVLGQQERMNNGANVWNLPVGYDK 353
+ E + + N ++N VG+DK
Sbjct: 395 VEESMIIANICCAHYLAKNAQTGIFNTHVGFDK 427
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,745,161
Number of Sequences: 539616
Number of extensions: 6855012
Number of successful extensions: 11704
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 11621
Number of HSP's gapped (non-prelim): 77
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)