Query 017058
Match_columns 378
No_of_seqs 348 out of 2232
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02281 chlorophyllide a oxyg 100.0 2.7E-72 5.9E-77 558.7 35.2 376 1-376 161-536 (536)
2 PLN02518 pheophorbide a oxygen 100.0 6.5E-51 1.4E-55 412.8 29.4 307 54-368 84-432 (539)
3 PLN00095 chlorophyllide a oxyg 100.0 5.4E-51 1.2E-55 390.3 24.8 271 55-333 67-371 (394)
4 COG4638 HcaE Phenylpropionate 100.0 5.7E-44 1.2E-48 352.5 23.6 312 21-366 5-356 (367)
5 TIGR03228 anthran_1_2_A anthra 100.0 1.6E-41 3.5E-46 337.4 22.2 179 21-217 16-218 (438)
6 TIGR03229 benzo_1_2_benA benzo 100.0 1.1E-41 2.4E-46 338.8 20.4 178 21-217 16-220 (433)
7 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 3E-33 6.5E-38 235.7 12.9 123 46-168 3-125 (129)
8 cd03545 Rieske_RO_Alpha_OHBDO_ 100.0 1.5E-32 3.2E-37 237.1 12.3 131 22-168 3-148 (150)
9 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 2.3E-32 5E-37 234.8 13.4 132 44-175 5-142 (144)
10 cd03537 Rieske_RO_Alpha_PrnD T 100.0 8.8E-32 1.9E-36 224.1 12.5 109 59-168 2-119 (123)
11 cd04338 Rieske_RO_Alpha_Tic55 100.0 1.3E-31 2.7E-36 227.4 12.8 117 52-168 9-130 (134)
12 cd03538 Rieske_RO_Alpha_AntDO 100.0 9E-31 2E-35 225.1 12.0 128 24-168 3-144 (146)
13 cd03531 Rieske_RO_Alpha_KSH Th 100.0 2.8E-30 6E-35 213.6 12.5 109 60-168 1-111 (115)
14 cd03480 Rieske_RO_Alpha_PaO Ri 100.0 3E-30 6.6E-35 219.9 11.8 113 56-168 13-134 (138)
15 cd03532 Rieske_RO_Alpha_VanA_D 100.0 6.3E-30 1.4E-34 211.9 12.4 110 57-167 2-113 (116)
16 cd03541 Rieske_RO_Alpha_CMO Ri 100.0 7.5E-30 1.6E-34 211.3 11.4 108 60-167 1-115 (118)
17 cd03548 Rieske_RO_Alpha_OMO_CA 100.0 1.3E-29 2.9E-34 215.6 12.8 113 54-167 8-127 (136)
18 cd03539 Rieske_RO_Alpha_S5H Th 100.0 1.1E-29 2.5E-34 213.8 10.7 108 61-168 1-127 (129)
19 cd03472 Rieske_RO_Alpha_BPDO_l 100.0 4E-29 8.7E-34 210.2 11.2 113 56-168 4-126 (128)
20 cd03469 Rieske_RO_Alpha_N Ries 100.0 5.5E-28 1.2E-32 200.8 10.6 107 61-167 1-115 (118)
21 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 9.6E-28 2.1E-32 200.7 11.5 110 59-168 1-121 (123)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 1.3E-27 2.7E-32 200.0 11.4 108 61-168 1-119 (123)
23 cd03542 Rieske_RO_Alpha_HBDO R 99.9 1.3E-26 2.8E-31 193.6 11.7 108 61-168 1-121 (123)
24 cd03528 Rieske_RO_ferredoxin R 99.9 6.2E-26 1.3E-30 182.2 11.0 96 61-161 1-97 (98)
25 cd03530 Rieske_NirD_small_Baci 99.9 1.1E-25 2.4E-30 180.8 10.7 97 61-162 1-98 (98)
26 cd03474 Rieske_T4moC Toluene-4 99.9 1.7E-25 3.8E-30 182.9 11.6 102 61-167 1-103 (108)
27 TIGR02377 MocE_fam_FeS Rieske 99.9 7.9E-25 1.7E-29 176.9 11.0 100 60-163 1-101 (101)
28 cd03529 Rieske_NirD Assimilato 99.9 1E-24 2.3E-29 176.8 10.2 97 61-162 1-103 (103)
29 TIGR02378 nirD_assim_sml nitri 99.9 1.3E-24 2.7E-29 177.0 9.9 99 60-163 1-105 (105)
30 cd03478 Rieske_AIFL_N AIFL (ap 99.9 3.2E-24 7E-29 171.3 9.5 93 63-160 2-95 (95)
31 PRK09965 3-phenylpropionate di 99.9 6.4E-24 1.4E-28 173.1 10.6 100 61-166 3-104 (106)
32 PF13806 Rieske_2: Rieske-like 99.9 2.8E-22 6.1E-27 162.3 10.3 98 60-162 1-104 (104)
33 PF00355 Rieske: Rieske [2Fe-2 99.9 1.9E-22 4.2E-27 161.5 9.2 93 60-157 1-97 (97)
34 PRK09511 nirD nitrite reductas 99.9 9.1E-22 2E-26 160.6 10.5 98 60-162 3-107 (108)
35 cd03467 Rieske Rieske domain; 99.9 1.6E-21 3.5E-26 156.6 10.2 95 61-159 1-97 (98)
36 COG2146 {NirD} Ferredoxin subu 99.9 3.1E-21 6.8E-26 156.7 10.8 101 59-163 3-105 (106)
37 cd03477 Rieske_YhfW_C YhfW fam 99.9 2.1E-21 4.6E-26 153.5 9.3 86 64-154 2-87 (91)
38 cd03476 Rieske_ArOX_small Smal 99.8 2.1E-19 4.6E-24 150.3 10.2 95 63-162 5-114 (126)
39 cd08878 RHO_alpha_C_DMO-like C 99.8 3.7E-18 8.1E-23 152.4 14.3 171 188-365 5-195 (196)
40 cd03471 Rieske_cytochrome_b6f 99.8 1.8E-18 3.8E-23 143.7 10.9 90 71-165 21-113 (126)
41 TIGR02694 arsenite_ox_S arseni 99.7 2.9E-17 6.2E-22 137.7 9.9 94 63-161 8-115 (129)
42 cd03473 Rieske_CMP_Neu5Ac_hydr 99.7 2.8E-17 6E-22 131.6 8.0 72 67-139 14-89 (107)
43 cd00680 RHO_alpha_C C-terminal 99.7 4.1E-16 8.8E-21 138.3 14.4 161 187-365 3-186 (188)
44 cd03470 Rieske_cytochrome_bc1 99.7 2.2E-16 4.8E-21 132.1 10.3 92 66-161 5-125 (126)
45 cd08885 RHO_alpha_C_1 C-termin 99.6 1.2E-14 2.5E-19 130.5 15.6 163 186-365 3-188 (190)
46 cd08887 RHO_alpha_C_3 C-termin 99.6 2.2E-14 4.7E-19 127.9 13.2 161 187-365 4-183 (185)
47 cd08883 RHO_alpha_C_CMO-like C 99.6 3.9E-14 8.4E-19 125.7 14.4 160 186-365 3-173 (175)
48 PRK13474 cytochrome b6-f compl 99.6 1.2E-14 2.5E-19 128.9 10.0 88 71-163 73-163 (178)
49 cd08886 RHO_alpha_C_2 C-termin 99.5 6.8E-14 1.5E-18 125.0 13.4 160 186-364 3-181 (182)
50 cd08884 RHO_alpha_C_GbcA-like 99.5 8.3E-14 1.8E-18 126.7 14.2 167 180-364 7-202 (205)
51 TIGR01416 Rieske_proteo ubiqui 99.4 1.6E-12 3.5E-17 114.8 10.5 93 60-157 40-168 (174)
52 PF00848 Ring_hydroxyl_A: Ring 99.4 8.3E-13 1.8E-17 118.5 7.7 159 188-365 11-206 (209)
53 cd03475 Rieske_SoxF_SoxL SoxF 99.2 1.1E-10 2.3E-15 101.7 9.2 66 92-161 74-158 (171)
54 PF08417 PaO: Pheophorbide a o 98.9 4.6E-09 9.9E-14 83.2 8.5 87 248-345 1-90 (92)
55 cd08882 RHO_alpha_C_MupW-like 98.9 8.3E-09 1.8E-13 96.3 10.7 85 280-365 146-241 (243)
56 cd08880 RHO_alpha_C_ahdA1c-lik 98.9 6.7E-09 1.4E-13 95.7 9.4 137 187-344 4-187 (222)
57 PF11723 Aromatic_hydrox: Homo 98.7 4.6E-08 1E-12 88.4 9.1 187 179-369 21-239 (240)
58 cd08881 RHO_alpha_C_NDO-like C 98.7 4.2E-08 9.2E-13 89.3 8.6 130 186-340 8-156 (206)
59 COG0723 QcrA Rieske Fe-S prote 98.7 2.1E-08 4.6E-13 89.1 6.3 78 83-164 84-168 (177)
60 cd08879 RHO_alpha_C_AntDO-like 98.6 1.1E-07 2.3E-12 88.6 8.0 31 187-217 4-34 (237)
61 TIGR03171 soxL2 Rieske iron-su 98.4 4.6E-07 9.9E-12 85.8 7.0 68 91-162 174-276 (321)
62 KOG1671 Ubiquinol cytochrome c 98.4 3.3E-07 7.1E-12 80.4 4.7 74 66-139 91-190 (210)
63 KOG1336 Monodehydroascorbate/f 96.1 0.0026 5.7E-08 63.7 2.0 38 104-141 1-39 (478)
64 PF09740 DUF2043: Uncharacteri 65.1 3.8 8.2E-05 33.3 1.5 37 92-131 62-100 (110)
65 PF11572 DUF3234: Protein of u 59.2 2.5 5.3E-05 33.0 -0.5 53 54-110 2-54 (103)
66 PF10080 DUF2318: Predicted me 48.4 1.1E+02 0.0024 24.6 7.3 80 70-163 2-92 (102)
67 PF14446 Prok-RING_1: Prokaryo 36.8 16 0.00034 25.8 0.7 25 115-139 18-47 (54)
68 PF09538 FYDLN_acid: Protein o 36.6 21 0.00045 29.0 1.5 31 99-131 9-39 (108)
69 COG1645 Uncharacterized Zn-fin 35.5 29 0.00063 29.1 2.2 29 98-129 27-55 (131)
70 PF07282 OrfB_Zn_ribbon: Putat 31.6 41 0.0009 24.4 2.3 33 98-131 27-59 (69)
71 PF05265 DUF723: Protein of un 27.6 33 0.0007 24.7 1.0 16 116-131 30-45 (60)
72 PRK00420 hypothetical protein; 27.2 53 0.0011 26.8 2.4 34 98-133 22-56 (112)
73 TIGR02300 FYDLN_acid conserved 23.0 50 0.0011 27.5 1.5 31 99-131 9-39 (129)
74 PF14319 Zn_Tnp_IS91: Transpos 22.2 59 0.0013 26.4 1.8 40 91-130 47-94 (111)
75 COG4391 Uncharacterized protei 21.6 65 0.0014 23.3 1.6 18 114-131 44-61 (62)
No 1
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=2.7e-72 Score=558.75 Aligned_cols=376 Identities=78% Similarity=1.384 Sum_probs=317.7
Q ss_pred CccccccccccCCCCcccccccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCCCCCeEEEEE
Q 017058 1 MEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDC 80 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~ 80 (378)
||++|||||||+++.+.++..+++..+++...+.+.++..+|+++.++|++||..+++|.||+||.++||++|+++.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~l 240 (536)
T PLN02281 161 MEELVNDRLLPGRVVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIEC 240 (536)
T ss_pred HHHHhhhhccCCCccccccccccCCcCcchhhhhhhcccccccccccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEEE
Confidence 89999999999886666666666666666778888999999999999999999999999999999999999899999999
Q ss_pred CCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCccccccccccCCceEEcCeEE
Q 017058 81 FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIW 160 (378)
Q Consensus 81 ~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~G~I~ 160 (378)
+|++|+|||+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|+.+..+.++++|||++++|+||
T Consensus 241 lG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlVw 320 (536)
T PLN02281 241 FEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIW 320 (536)
T ss_pred CCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999998765667899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCceEeeEEEEEEecChhhhhhcccccCCCCCcCcccccCCCCCcceeeeecCCCCCCceec
Q 017058 161 IWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWD 240 (378)
Q Consensus 161 v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (378)
||++++++.+.+|.+..+.++.......+++++||++++||++|+||++|+|+++++.....+..+....+.....++|.
T Consensus 321 V~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~~H~~fvH~~t~g~~~~~p~~v~~~~~~~~~~p~~~ 400 (536)
T PLN02281 321 IWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWD 400 (536)
T ss_pred EEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccccccccccCcccccCcccCCceeEEecccCCCCcccc
Confidence 99987655445565544446655555678999999999999999999999999999986655555554444444445555
Q ss_pred CCCCcceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHH
Q 017058 241 PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFA 320 (378)
Q Consensus 241 ~~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (378)
..+..++|.+||++...+++..+|...+......+.++..++.|||+++++||+||.+.++|..+.+..++...++..+.
T Consensus 401 ~~pv~~~f~aP~~v~l~i~~~~~G~~~~~~~~~~~~~~~~~h~~TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l~~~~ 480 (536)
T PLN02281 401 PYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFA 480 (536)
T ss_pred cCCceEEEECcEEEEEeeccccCCccccccccccccceEEEEEEEECCCCeEEEEEEecccCccccccccchHHHHHHHh
Confidence 44456789999999888887777664433333344566778999999999999999999999765333444444466678
Q ss_pred hHHHhhhHHHHHHHHhhccCCCCcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCCC
Q 017058 321 EQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMK 376 (378)
Q Consensus 321 ~~V~~ED~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rr~l~~l~~g~~~~p~~~ 376 (378)
..+|+||+.|+|+||+++......+++++++|+++++||||++++++|.+++||+.
T Consensus 481 ~~vF~ED~~iLEaQQ~~i~~~~~~~~l~l~aD~~~v~~RRWl~~~~~~~~~~pf~~ 536 (536)
T PLN02281 481 EQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPFSG 536 (536)
T ss_pred hHhhHhHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHhhcccCCCCCCC
Confidence 89999999999999999988777788999999999999999999999999999984
No 2
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=6.5e-51 Score=412.79 Aligned_cols=307 Identities=22% Similarity=0.436 Sum_probs=223.3
Q ss_pred cccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEe-CCCcEEEEccCCCCCCCCCCCcccc-CCeeecCCCCeEEcCC
Q 017058 54 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTD 131 (378)
Q Consensus 54 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~-~~G~~~a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~f~~~ 131 (378)
...+++.||+||.++||++|+++.++++|++|||||+ .+|+++||.|+|||||++|+.|+++ ++.|+||||||+||.+
T Consensus 84 ~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~~ 163 (539)
T PLN02518 84 KFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC 163 (539)
T ss_pred hhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcCC
Confidence 3578999999999999988999999999999999998 8999999999999999999999986 6899999999999999
Q ss_pred CceeecCCccc----------cccccccCCceEEcCeEEEcCCCCC----CCCCCCCCC---CCCCceEeeEEEEEEecC
Q 017058 132 GKCEKMPSTQL----------RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCLL---PPSGFEIHAEIVMELPIE 194 (378)
Q Consensus 132 G~~~~~P~~~~----------~~~~l~~~~v~~~~G~I~v~~~~~~----~~~~l~~~~---~~~~~~~~~~~~~~~~~n 194 (378)
|+|+.||+... ...++++|||+|++|+||||+++++ +...+|.+. .+++|... ....+++++
T Consensus 164 G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~ 242 (539)
T PLN02518 164 GSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTV-TIQRDLFYG 242 (539)
T ss_pred CCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeE-EEEEEEecC
Confidence 99999997521 2457999999999999999998652 112334332 23445432 345688999
Q ss_pred hhhhhhcccccCCCCCcCcccccCCCC-Ccceeeeec-CCCCCCcee-cCCCCcceecCCeeEEEeeeecCCCCcCCCcc
Q 017058 195 HGLLLDNLLDLAHAPFTHTSTFAKGWS-VPSLVKFLT-PASGLQGYW-DPYPIDMEFRPPCMVLSTIGISKPGKLEGQNT 271 (378)
Q Consensus 195 wk~~~EN~~D~~H~~~vH~~~~~~~~~-~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~ 271 (378)
|++++||++|++|++|+|+++++.... .+...++.. ...++.+.+ ........|.+||++...+++.......+
T Consensus 243 ~~~l~EN~lD~sH~pfvH~~~~G~~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~~~~~~~~~~~~~~~~~--- 319 (539)
T PLN02518 243 YDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYYINKIEIDTKLPIVG--- 319 (539)
T ss_pred chhHHHhCCccchhceeccccccCccccccccceEEEcCCCcccccccCCCceEEEEECCeEEEEeeeeeccccCCC---
Confidence 999999999999999999999986421 121122211 112222221 11223467899998766555431000000
Q ss_pred ccccceeeEEEEEecCCCCeEEEEEEeeccchhh-------ccCchhHHHHHH-HHHhHHHhhhHHHHHHHHhhccCC-C
Q 017058 272 RQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-------LKHVPFMQYLWR-HFAEQVLNEDLRLVLGQQERMNNG-A 342 (378)
Q Consensus 272 ~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~V~~ED~~ile~qq~~l~~g-~ 342 (378)
.....+...++++|+++++||++|.+.++|... .+.+| .++. ...++|++||+.+++.|++.+... .
T Consensus 320 -~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~k~~P---rW~~h~~~n~Vl~~D~~~lh~Qe~~~~~~~~ 395 (539)
T PLN02518 320 -DQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWWQLVP---RWYEHWTSNKVYDGDMIVLQGQEKIFLSKSG 395 (539)
T ss_pred -CcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhhhcCc---hHHHHhhhccchHhHHHHHHHHHHHHhhccc
Confidence 011234456788999999999999998887322 12233 2222 225789999999999998876431 1
Q ss_pred -----------CcCCcccCCCHHHHHHHHHHHHHHcC
Q 017058 343 -----------NVWNLPVGYDKLGVRYRLWRDALEKG 368 (378)
Q Consensus 343 -----------~~~~l~~~aD~~~v~~Rr~l~~l~~g 368 (378)
...++|+++|+.+++||||+++++.|
T Consensus 396 e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g 432 (539)
T PLN02518 396 EGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNS 432 (539)
T ss_pred cccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcC
Confidence 12358999999999999999998653
No 3
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=5.4e-51 Score=390.29 Aligned_cols=271 Identities=37% Similarity=0.767 Sum_probs=223.7
Q ss_pred ccccCceEEEEecCCC-CCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCc
Q 017058 55 TRLKNFWFPVAFSTDL-KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 133 (378)
Q Consensus 55 ~~~~~~W~~v~~~~el-~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~ 133 (378)
...++.||+||+++|| ++|+++.++++|++|+|||+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+
T Consensus 67 ~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G~ 146 (394)
T PLN00095 67 ADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGGE 146 (394)
T ss_pred CchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCCCC
Confidence 4568999999999999 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCccc--cccccccCCceEEcCeEEEcCCCCCCCC------------------CCCC-CCCCCCceEeeEEEEEEe
Q 017058 134 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPTA------------------TIPC-LLPPSGFEIHAEIVMELP 192 (378)
Q Consensus 134 ~~~~P~~~~--~~~~l~~~~v~~~~G~I~v~~~~~~~~~------------------~l~~-~~~~~~~~~~~~~~~~~~ 192 (378)
|+.+|+.+. .+.++++|||++++|+||||+++..+.. .+|. +.+.++|..+.+..++++
T Consensus 147 C~~iP~~~~~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~~gf~~~aev~~Dlp 226 (394)
T PLN00095 147 CAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADIK 226 (394)
T ss_pred EeeCCCccccccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCCCCceEEEEEEEecc
Confidence 999997532 3467899999999999999998644321 2333 344467877677678999
Q ss_pred cChhhhhhcccccCC-CCCcCcccccC----C---CCCcceeeeecCCCCCCceecCCCCcceecCCeeEEEeeeecC-C
Q 017058 193 IEHGLLLDNLLDLAH-APFTHTSTFAK----G---WSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISK-P 263 (378)
Q Consensus 193 ~nwk~~~EN~~D~~H-~~~vH~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~-~ 263 (378)
+.|.+++||+||++| .+|+|+.||.. . +..+.... .....++.+.|++++++|+|.+||++.+++++.+ |
T Consensus 227 ~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~-~~~~~~l~g~~~~~p~~~~F~ppc~~~s~i~l~~~~ 305 (394)
T PLN00095 227 LDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGT-KIIAKVLRGGRDAVPQSATFKPACVIASTIALEDGP 305 (394)
T ss_pred ccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhh-hhhhhhheeecccCCcceeEcCceeeeeeecccccC
Confidence 999999999999999 69999988851 1 11121111 1223467888999999999999999999999864 6
Q ss_pred CCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchh---hccCchhHHHHHHHHHhHHHhhhHHHHHH
Q 017058 264 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS---VLKHVPFMQYLWRHFAEQVLNEDLRLVLG 333 (378)
Q Consensus 264 g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~V~~ED~~ile~ 333 (378)
|+.. .|..++.++|+|.|.++++||++++++++|.. +...+|. ..|..++.+|+.||++++.+
T Consensus 306 g~~~-----~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~--~~w~~~a~~vl~e~l~~v~~ 371 (394)
T PLN00095 306 GGGD-----GTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAG--DVWANLAMMVLKEELEDVRA 371 (394)
T ss_pred CCCc-----cccceeeeEEEEEecCCCceEEEEeecccccccHHHhHhchH--HHHHHHHHHHHHHHHHHHhc
Confidence 5533 24568899999999999999999999999965 5555554 67889999999999998753
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=5.7e-44 Score=352.53 Aligned_cols=312 Identities=25% Similarity=0.395 Sum_probs=218.0
Q ss_pred ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEcc
Q 017058 21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQN 100 (378)
Q Consensus 21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n 100 (378)
...+.|+|++++++|...|| .+.||+||+++||+++++++++++|+++||+|+.||+++||.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-----------------~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~d 67 (367)
T COG4638 5 LPPPFYTDPELFQLELERIF-----------------YKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALAD 67 (367)
T ss_pred CCCccccCHHHHHHHHHHhh-----------------hhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEec
Confidence 34568999999999999997 4578999999999988999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccC-CeeecCCCCeEEcCCCceeecCC--ccc----cccccccCCceEEcCeEEEcCCCCCCCC---
Q 017058 101 TCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPS--TQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTA--- 170 (378)
Q Consensus 101 ~CpHrg~~L~~g~~~~-~~l~CpyHgw~f~~~G~~~~~P~--~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~~~--- 170 (378)
+|||||++|+.|++.+ +.|+||||||+||++|+|+.+|. ... .+.+|++||+++++|+||||+++++++.
T Consensus 68 ~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~~ 147 (367)
T COG4638 68 VCPHRGARLSEGRVGGKGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEAF 147 (367)
T ss_pred cCCCCCchhccccCCCCceEecCCCceEECCCCcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhHh
Confidence 9999999999999988 89999999999999999999994 221 2357999999999999999999876431
Q ss_pred CCCCCC-CCCCceEe-eEEEEEEecChhhhhhcccc-cCCCCCcCcccccCCCCCc--c-eee--------eecCCCCCC
Q 017058 171 TIPCLL-PPSGFEIH-AEIVMELPIEHGLLLDNLLD-LAHAPFTHTSTFAKGWSVP--S-LVK--------FLTPASGLQ 236 (378)
Q Consensus 171 ~l~~~~-~~~~~~~~-~~~~~~~~~nwk~~~EN~~D-~~H~~~vH~~~~~~~~~~~--~-~~~--------~~~~~~~~~ 236 (378)
..|... ...++... .......++|||+++||++| +||++++|+++.+...... . ... .........
T Consensus 148 ~~p~~~~~~~~~~~~~~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (367)
T COG4638 148 LPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVGAYDVTAGGHWDVILATGNPFFQ 227 (367)
T ss_pred cccccccccccccccCceEEEEecccceEEeeccCCccccccccCHHHhcccccccccccccccCCceeeeeccCCCccC
Confidence 112222 22233322 45567888999999998887 9999999998776432110 0 000 000000000
Q ss_pred c-eec--------CCC-----CcceecCCee-EEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeecc
Q 017058 237 G-YWD--------PYP-----IDMEFRPPCM-VLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLD 301 (378)
Q Consensus 237 ~-~~~--------~~~-----~~~~~~~P~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~ 301 (378)
. .+. ... ..+.+..|+. +... ............|+++++|.+.......
T Consensus 228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 291 (367)
T COG4638 228 PLGSEASSYGFDGNYEVHVPGAYLLFLYPNSTVWNH----------------VTVDDVIVFFVQPIDEDETMVTLVWLVL 291 (367)
T ss_pred CcchhhhccccccccccccCceeEEEEcCCchheee----------------ecccceeEEEEEecCCceeEEEeeeeec
Confidence 0 000 000 0011222321 1000 0111234556799999999987653321
Q ss_pred chhhccCchhHHHHHHHHHhHHHhhhHHHHHHHHhhccCCCC-cCCcccCCCHHHHHHHHHHHHHH
Q 017058 302 FASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALE 366 (378)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~V~~ED~~ile~qq~~l~~g~~-~~~l~~~aD~~~v~~Rr~l~~l~ 366 (378)
.. .......+...+..+...++.||..|+|.||+++.+... .....+..|...+++++|+.+..
T Consensus 292 ~~-~~~~~~~~~~~~~~~~~~~~~qD~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (367)
T COG4638 292 PD-LVEGVDYFDKLIRRFRQEILDQDREILENQQPGRLSPALERGPYPIREDAGSVQFRRWLAERL 356 (367)
T ss_pred cc-hhhHHHHHHHHHHHHhccCcHHHHHHHHHHhcccccccccCCCccccccchhhHHHHHHHHHH
Confidence 11 112223334556677788999999999999997666444 34467788999999999987554
No 5
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=1.6e-41 Score=337.40 Aligned_cols=179 Identities=20% Similarity=0.315 Sum_probs=152.7
Q ss_pred ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058 21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ 99 (378)
Q Consensus 21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~ 99 (378)
.+.++|||+++|++|+++||.+ .|++||+++||+ +|+++++++++++|||+|+.||+++||.
T Consensus 16 v~~~~ytd~~if~~E~~~IF~~-----------------~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~~ 78 (438)
T TIGR03228 16 IARDMFTEPELFDLEMELIFEK-----------------NWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHALV 78 (438)
T ss_pred cChheECCHHHHHHHHHHHHhh-----------------CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEc
Confidence 6677999999999999999855 456999999998 5999999999999999999999999999
Q ss_pred cCCCCCCCCCCC-ccccCCeeecCCCCeEEcCCCceeecCCcc-------ccccccccCCceEEcCeEEEcCCCCCCCCC
Q 017058 100 NTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPTAT 171 (378)
Q Consensus 100 n~CpHrg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~-------~~~~~l~~~~v~~~~G~I~v~~~~~~~~~~ 171 (378)
|+|||||++|+. +.++.+.|+||||||+|++||+|+++|... ..+.+|++++|++.+|+|||+++++++ .+
T Consensus 79 N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~-~~ 157 (438)
T TIGR03228 79 NACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAAT-DS 157 (438)
T ss_pred ccCCCCCCccccCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCC-CC
Confidence 999999999997 888889999999999999999999998542 235678899999999999999987642 23
Q ss_pred CCCCCCC--------------CCceEe-eEEEEEEecChhhhhhcccccCCCCCcCccccc
Q 017058 172 IPCLLPP--------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 217 (378)
Q Consensus 172 l~~~~~~--------------~~~~~~-~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~ 217 (378)
|+++++. .++++. ....+++++|||+.+||++|+||++++|.++++
T Consensus 158 l~e~lg~~~~~ld~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 218 (438)
T TIGR03228 158 LEDFLGDARVFLDMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVA 218 (438)
T ss_pred HHHHhhhHHHHHHHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHh
Confidence 5555431 124332 345678999999999999999999999988764
No 6
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=1.1e-41 Score=338.82 Aligned_cols=178 Identities=20% Similarity=0.266 Sum_probs=149.3
Q ss_pred ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058 21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ 99 (378)
Q Consensus 21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~ 99 (378)
...+.|||+++|++|+++||.++ |+.||++++|+ +|+++++++++++|||+|++||+++||.
T Consensus 16 ~~~~~Ytd~~~f~~E~~~IF~~~-----------------W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af~ 78 (433)
T TIGR03229 16 CKREMFTDPELFDLEMKHIFEGN-----------------WIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAFI 78 (433)
T ss_pred CChhhcCCHHHHHHHHHHHhhhC-----------------CEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEEe
Confidence 66779999999999999998655 55899999998 5899999999999999999999999999
Q ss_pred cCCCCCCCCCCCcc-ccCCeeecCCCCeEEcCCCceeecCCccc----------cccccccCC-ceEEcCeEEEcCCCCC
Q 017058 100 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSLP-CFEQEGMIWIWPGDEP 167 (378)
Q Consensus 100 n~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~G~~~~~P~~~~----------~~~~l~~~~-v~~~~G~I~v~~~~~~ 167 (378)
|+|||||++|+.|. ++.+.|+||||||+||.||+|+++|.... ...+|.+++ ++..+|+|||++++++
T Consensus 79 N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~~ 158 (433)
T TIGR03229 79 NACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPDV 158 (433)
T ss_pred CcCCCCCCCcccccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCCC
Confidence 99999999999874 56789999999999999999999987321 135799997 5666899999998765
Q ss_pred CCCCCCCCCCC-------------CCceEe-eEEEEEEecChhhhhhcccccCCCCCcCccccc
Q 017058 168 PTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 217 (378)
Q Consensus 168 ~~~~l~~~~~~-------------~~~~~~-~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~ 217 (378)
+ +|++++++ .++... ....+++++|||+++||++|+||++++|++++.
T Consensus 159 ~--~l~e~Lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 220 (433)
T TIGR03229 159 L--PLEEHLGETAKIIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAA 220 (433)
T ss_pred C--CHHHHhhhHHHHHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHH
Confidence 4 45555432 233322 345788999999999999999999999987654
No 7
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=100.00 E-value=3e-33 Score=235.68 Aligned_cols=123 Identities=65% Similarity=1.381 Sum_probs=115.0
Q ss_pred ccCCCCCccccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCC
Q 017058 46 VSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHG 125 (378)
Q Consensus 46 ~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHg 125 (378)
++|+++++...+++.|++||+++||++|+++.++++|++++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+|||||
T Consensus 3 ~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hg 82 (129)
T cd04337 3 VLGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHG 82 (129)
T ss_pred ccccCccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCC
Confidence 46888999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred eEEcCCCceeecCCccccccccccCCceEEcCeEEEcCCCCCC
Q 017058 126 WEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 126 w~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~ 168 (378)
|+||.+|+|+.+|..+..+.+|++||+++++|+|||+++++.|
T Consensus 83 w~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V~V~~~~~~p 125 (129)
T cd04337 83 WEYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWPGDDPP 125 (129)
T ss_pred CEECCCCCEEeCCcCCCccCCcceEeEEEECCEEEEEcCCCCC
Confidence 9999999999999765445689999999999999999987654
No 8
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.98 E-value=1.5e-32 Score=237.15 Aligned_cols=131 Identities=21% Similarity=0.364 Sum_probs=115.5
Q ss_pred cCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEcc
Q 017058 22 CASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQN 100 (378)
Q Consensus 22 ~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n 100 (378)
+.+.|||+++|+.|+++||+ .+.|+.||++++|+ +|+++++.++|++|+|+|+.+|+++|+.|
T Consensus 3 ~~~~y~d~~~~~~E~~~if~----------------~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~n 66 (150)
T cd03545 3 PYKVFTDRAYFDREQERIFR----------------GKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWVN 66 (150)
T ss_pred ChhhccCHHHHHHHHHhhhC----------------CCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEcc
Confidence 45689999999999999984 04456999999998 59999999999999999988999999999
Q ss_pred CCCCCCCCCCCcc-ccCCeeecCCCCeEEcCCCceeecCCcc-------------ccccccccCCceEEcCeEEEcCCCC
Q 017058 101 TCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------------LRNVKIKSLPCFEQEGMIWIWPGDE 166 (378)
Q Consensus 101 ~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~G~~~~~P~~~-------------~~~~~l~~~~v~~~~G~I~v~~~~~ 166 (378)
+|||||++|+.|. ++++.|+||||||+||++|+|+.+|..+ ....+|++|+|++.+|+|||+++++
T Consensus 67 ~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~ 146 (150)
T cd03545 67 RCAHRGALVCRERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDE 146 (150)
T ss_pred cCcCCCCEecccccCCCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCC
Confidence 9999999999874 5578999999999999999999999642 1246899999999999999999876
Q ss_pred CC
Q 017058 167 PP 168 (378)
Q Consensus 167 ~~ 168 (378)
++
T Consensus 147 ~~ 148 (150)
T cd03545 147 VE 148 (150)
T ss_pred CC
Confidence 53
No 9
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.98 E-value=2.3e-32 Score=234.77 Aligned_cols=132 Identities=33% Similarity=0.714 Sum_probs=118.5
Q ss_pred ccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecC
Q 017058 44 LNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCP 122 (378)
Q Consensus 44 ~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~Cp 122 (378)
+..+||-+++...+++.|++||.+++|+ +|+++.+++.|++++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP 84 (144)
T cd03479 5 LTRVGPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCC 84 (144)
T ss_pred eeecCCCCchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEcc
Confidence 4568999999999999999999999999 699999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEcCCCceeecCCccc-----cccccccCCceEEcCeEEEcCCCCCCCCCCCCC
Q 017058 123 YHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 175 (378)
Q Consensus 123 yHgw~f~~~G~~~~~P~~~~-----~~~~l~~~~v~~~~G~I~v~~~~~~~~~~l~~~ 175 (378)
||||+||.+|+|+.+|..+. ...+|++|+|++++|+|||++++..+++++|++
T Consensus 85 ~Hgw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~~~~p~~~~~ 142 (144)
T cd03479 85 YHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPAEEAPEFPRY 142 (144)
T ss_pred CCCcEECCCCCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCCCCCCCCCCC
Confidence 99999999999999997542 246799999999999999999864433445543
No 10
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.97 E-value=8.8e-32 Score=224.15 Aligned_cols=109 Identities=33% Similarity=0.739 Sum_probs=100.0
Q ss_pred CceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecC
Q 017058 59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138 (378)
Q Consensus 59 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P 138 (378)
..||+|+.++||+ ++++.++++|+++||+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP 80 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP 80 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence 5799999999996 678999999999999999899999999999999999999999999999999999999999999999
Q ss_pred Cccc---------cccccccCCceEEcCeEEEcCCCCCC
Q 017058 139 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 139 ~~~~---------~~~~l~~~~v~~~~G~I~v~~~~~~~ 168 (378)
..+. ...++++|||+|++|+||||++++.+
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~ 119 (123)
T cd03537 81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119 (123)
T ss_pred CCcccccccccCCcccccccEeEEEECCEEEEEcCCCCc
Confidence 7432 24689999999999999999987654
No 11
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.97 E-value=1.3e-31 Score=227.37 Aligned_cols=117 Identities=29% Similarity=0.813 Sum_probs=105.9
Q ss_pred CccccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCC
Q 017058 52 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 131 (378)
Q Consensus 52 ~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~ 131 (378)
.-...|++.|++||.++||++|..+.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+||++
T Consensus 9 ~~~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~ 88 (134)
T cd04338 9 VAEYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGE 88 (134)
T ss_pred ccccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCC
Confidence 34456789999999999999888899999999999999989999999999999999999999999999999999999999
Q ss_pred CceeecCCccc-----cccccccCCceEEcCeEEEcCCCCCC
Q 017058 132 GKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 132 G~~~~~P~~~~-----~~~~l~~~~v~~~~G~I~v~~~~~~~ 168 (378)
|+|+.+|.... ...+|++|||++++|+|||++++.++
T Consensus 89 G~~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~ 130 (134)
T cd04338 89 GKCVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATP 130 (134)
T ss_pred CCEEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCC
Confidence 99999997531 24569999999999999999987654
No 12
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.97 E-value=9e-31 Score=225.12 Aligned_cols=128 Identities=20% Similarity=0.379 Sum_probs=112.1
Q ss_pred CCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEccCC
Q 017058 24 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTC 102 (378)
Q Consensus 24 ~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~C 102 (378)
+.|+|+++|+.|++++|.+ .|+.||++++|+ +|+++++++.|++|+|+|+.+|+++|+.|+|
T Consensus 3 ~~y~~~~~~~~e~~~i~~~-----------------~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~C 65 (146)
T cd03538 3 DVYTDPEIFALEMERLFGN-----------------AWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRC 65 (146)
T ss_pred ceEcCHHHHHHHHHHHhhc-----------------CCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccC
Confidence 4799999999999999855 456999999998 6999999999999999999899999999999
Q ss_pred CCCCCCCCC-cccc-CCeeecCCCCeEEcCCCceeecCCccc----------cccccccC-CceEEcCeEEEcCCCCCC
Q 017058 103 AHRACPLHL-GSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSL-PCFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 103 pHrg~~L~~-g~~~-~~~l~CpyHgw~f~~~G~~~~~P~~~~----------~~~~l~~~-~v~~~~G~I~v~~~~~~~ 168 (378)
||||++|+. |.++ ++.|+||||||+||.||+|+.+|..+. ...+|+++ .|++++|+|||+++++++
T Consensus 66 pHrg~~L~~~~~g~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~ 144 (146)
T cd03538 66 PHKGTKIVSDGCGNTGKFFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP 144 (146)
T ss_pred cCCCCEeecccccccCCEEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence 999999975 4444 568999999999999999999997441 24689999 689999999999987653
No 13
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.97 E-value=2.8e-30 Score=213.57 Aligned_cols=109 Identities=25% Similarity=0.638 Sum_probs=101.2
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCC
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS 139 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~ 139 (378)
.|+.||.++||++|+++.+++.|++++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||||+||.+|+|+.+|.
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~ 80 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY 80 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence 49999999999999999999999999999998999999999999999999999999999999999999999999999997
Q ss_pred ccc--cccccccCCceEEcCeEEEcCCCCCC
Q 017058 140 TQL--RNVKIKSLPCFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 140 ~~~--~~~~l~~~~v~~~~G~I~v~~~~~~~ 168 (378)
.+. ...++++|||++++|+|||+++++..
T Consensus 81 ~~~~p~~~~l~~ypv~~~~g~v~v~~~~~~~ 111 (115)
T cd03531 81 ARRVPPLARTRAWPTLERNGQLFVWHDPEGN 111 (115)
T ss_pred ccCCCcccccceEeEEEECCEEEEECCCCCC
Confidence 542 24678999999999999999987653
No 14
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.97 E-value=3e-30 Score=219.88 Aligned_cols=113 Identities=30% Similarity=0.797 Sum_probs=102.4
Q ss_pred cccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeC-CCcEEEEccCCCCCCCCCCCcccc-CCeeecCCCCeEEcCCCc
Q 017058 56 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGK 133 (378)
Q Consensus 56 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~-~G~~~a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~f~~~G~ 133 (378)
.+++.|++||.++||++|+++.+++.|++|+|+|+. +|+++|+.|+|||||++|+.|.+. ++.|+||||||+||.+|+
T Consensus 13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~ 92 (138)
T cd03480 13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGS 92 (138)
T ss_pred CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCC
Confidence 467999999999999999999999999999999986 999999999999999999999875 579999999999999999
Q ss_pred eeecCCccc-------cccccccCCceEEcCeEEEcCCCCCC
Q 017058 134 CEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 134 ~~~~P~~~~-------~~~~l~~~~v~~~~G~I~v~~~~~~~ 168 (378)
|+.+|.... ...+|++|||++++|+|||++++.++
T Consensus 93 ~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~ 134 (138)
T cd03480 93 CQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN 134 (138)
T ss_pred EEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence 999997531 24679999999999999999987554
No 15
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.97 E-value=6.3e-30 Score=211.90 Aligned_cols=110 Identities=35% Similarity=0.819 Sum_probs=102.0
Q ss_pred ccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceee
Q 017058 57 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 136 (378)
Q Consensus 57 ~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~ 136 (378)
+++.|++||.++||+ |+++.+++.|.+++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~ 80 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH 80 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence 578999999999998 8999999999999999988999999999999999999999999999999999999999999999
Q ss_pred cCCcc--ccccccccCCceEEcCeEEEcCCCCC
Q 017058 137 MPSTQ--LRNVKIKSLPCFEQEGMIWIWPGDEP 167 (378)
Q Consensus 137 ~P~~~--~~~~~l~~~~v~~~~G~I~v~~~~~~ 167 (378)
+|..+ ....+|++|||++++|+|||++++++
T Consensus 81 ~p~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 113 (116)
T cd03532 81 MPGQERVPAKACVRSYPVVERDALIWIWMGDAA 113 (116)
T ss_pred CCCCCCCCCccccccCCEEEECCEEEEEcCCcc
Confidence 99864 23567999999999999999997654
No 16
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.96 E-value=7.5e-30 Score=211.27 Aligned_cols=108 Identities=25% Similarity=0.410 Sum_probs=99.9
Q ss_pred ceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecC
Q 017058 60 FWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 138 (378)
Q Consensus 60 ~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P 138 (378)
.|++||+++||+ +|++++++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||++|+|+.+|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P 80 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT 80 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence 499999999998 5889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc------cccccccCCceEEcCeEEEcCCCCC
Q 017058 139 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP 167 (378)
Q Consensus 139 ~~~~------~~~~l~~~~v~~~~G~I~v~~~~~~ 167 (378)
.... ...+|.+++|++.+|||||+++++.
T Consensus 81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~~ 115 (118)
T cd03541 81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRSL 115 (118)
T ss_pred CcccccCCCHHHCCCceEeEEEECCEEEEEeCCCc
Confidence 8542 3578999999999999999997643
No 17
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.96 E-value=1.3e-29 Score=215.63 Aligned_cols=113 Identities=31% Similarity=0.625 Sum_probs=100.4
Q ss_pred cccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcc--ccCCeeecCCCCeEEcC-
Q 017058 54 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST- 130 (378)
Q Consensus 54 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~- 130 (378)
...|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||+
T Consensus 8 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~ 86 (136)
T cd03548 8 KWGFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLD 86 (136)
T ss_pred ccCcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCC
Confidence 346789999999999999999999999999999999 69999999999999999999985 56789999999999996
Q ss_pred CCceeecCCccc----cccccccCCceEEcCeEEEcCCCCC
Q 017058 131 DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP 167 (378)
Q Consensus 131 ~G~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~ 167 (378)
+|+|+.+|..+. ...+|++|||++++|+|||++++..
T Consensus 87 tG~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~~~~ 127 (136)
T cd03548 87 DGKLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVGDGD 127 (136)
T ss_pred CccEEEcccCCCccccccCCCceEeEEEECCEEEEEeCCcc
Confidence 899998875432 1457999999999999999997643
No 18
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.96 E-value=1.1e-29 Score=213.80 Aligned_cols=108 Identities=22% Similarity=0.416 Sum_probs=97.3
Q ss_pred eEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCceeecC
Q 017058 61 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 138 (378)
Q Consensus 61 W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P 138 (378)
|++||+++||+ +|+++++.+++.+|+|+|+.||+++||.|+|||||++|+.|.. +++.|+||||||+||++|+|+.+|
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p 80 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP 80 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence 89999999998 5999999999999999999999999999999999999998764 557999999999999999999999
Q ss_pred Ccc-----------------ccccccccCCceEEcCeEEEcCCCCCC
Q 017058 139 STQ-----------------LRNVKIKSLPCFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 139 ~~~-----------------~~~~~l~~~~v~~~~G~I~v~~~~~~~ 168 (378)
..+ ..+.+|++++|++++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 127 (129)
T cd03539 81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE 127 (129)
T ss_pred ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence 742 124679999999999999999987654
No 19
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.96 E-value=4e-29 Score=210.18 Aligned_cols=113 Identities=23% Similarity=0.409 Sum_probs=99.4
Q ss_pred cccCceEEEEecCCCCC-CCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCc
Q 017058 56 RLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGK 133 (378)
Q Consensus 56 ~~~~~W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~ 133 (378)
++.+.|+.||+++||++ |++..+++++++|+|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.+|+
T Consensus 4 i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~G~ 83 (128)
T cd03472 4 VFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTAGN 83 (128)
T ss_pred hhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCCcC
Confidence 45778889999999985 777888899999999999999999999999999999999864 4568999999999999999
Q ss_pred eeecCCccc--------cccccccCCceEEcCeEEEcCCCCCC
Q 017058 134 CEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 134 ~~~~P~~~~--------~~~~l~~~~v~~~~G~I~v~~~~~~~ 168 (378)
|+.+|..+. ...+|++++|.+++|+|||+++++++
T Consensus 84 ~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~ 126 (128)
T cd03472 84 LVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP 126 (128)
T ss_pred EEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence 999998532 13468999999999999999988754
No 20
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.95 E-value=5.5e-28 Score=200.76 Aligned_cols=107 Identities=33% Similarity=0.669 Sum_probs=99.3
Q ss_pred eEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCceeecC
Q 017058 61 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 138 (378)
Q Consensus 61 W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P 138 (378)
|++||.++||+ +|+.+.+++.+++++|+|+.+|+++|+.|+|||+|++|+.|.+ .++.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P 80 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP 80 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence 99999999999 8999999999999999998899999999999999999999998 889999999999999999999999
Q ss_pred Cccc------cccccccCCceEEcCeEEEcCCCCC
Q 017058 139 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP 167 (378)
Q Consensus 139 ~~~~------~~~~l~~~~v~~~~G~I~v~~~~~~ 167 (378)
.... ...+|++|||++++|+|||+++++.
T Consensus 81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~ 115 (118)
T cd03469 81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDA 115 (118)
T ss_pred cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCC
Confidence 8642 2467999999999999999998754
No 21
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.95 E-value=9.6e-28 Score=200.72 Aligned_cols=110 Identities=21% Similarity=0.486 Sum_probs=96.4
Q ss_pred CceEEEEecCCCCC-CCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccC-CeeecCCCCeEEcCCCceee
Q 017058 59 NFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEK 136 (378)
Q Consensus 59 ~~W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~-~~l~CpyHgw~f~~~G~~~~ 136 (378)
+.|+.||+++||++ |++..+++++++++|+|+.+|+++|+.|+|||||++|+.|...+ +.|+||||||+||.||+|+.
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~ 80 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG 80 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence 46999999999986 78888889999999999889999999999999999999987764 68999999999999999999
Q ss_pred cCCccc--------cccccccCCc-eEEcCeEEEcCCCCCC
Q 017058 137 MPSTQL--------RNVKIKSLPC-FEQEGMIWIWPGDEPP 168 (378)
Q Consensus 137 ~P~~~~--------~~~~l~~~~v-~~~~G~I~v~~~~~~~ 168 (378)
+|..+. ...+|+++++ ++++|+|||+++++++
T Consensus 81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~ 121 (123)
T cd03535 81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP 121 (123)
T ss_pred CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence 997432 2367999986 5579999999987643
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.95 E-value=1.3e-27 Score=200.01 Aligned_cols=108 Identities=19% Similarity=0.358 Sum_probs=96.1
Q ss_pred eEEEEecCCCCC-CCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcccc-CCeeecCCCCeEEcCCCceeecC
Q 017058 61 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMP 138 (378)
Q Consensus 61 W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~-~~~l~CpyHgw~f~~~G~~~~~P 138 (378)
|+.||+++||++ |++..+++.+.+++|+|+.+|+++|+.|+|||||++|+.|... ...|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p 80 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence 899999999986 8888889999999999988999999999999999999987654 36799999999999999999999
Q ss_pred Cccc---------cccccccCCceEEcCeEEEcCCCCCC
Q 017058 139 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 139 ~~~~---------~~~~l~~~~v~~~~G~I~v~~~~~~~ 168 (378)
..+. ...+|++|+|++++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 119 (123)
T cd03536 81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGP 119 (123)
T ss_pred ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCC
Confidence 7431 23679999999999999999987643
No 23
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.94 E-value=1.3e-26 Score=193.58 Aligned_cols=108 Identities=24% Similarity=0.468 Sum_probs=94.1
Q ss_pred eEEEEecCCCCC-CCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCceeecC
Q 017058 61 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 138 (378)
Q Consensus 61 W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P 138 (378)
|+.||+++||++ |+++.+++.+++++|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p 80 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence 889999999985 889999999999999999899999999999999999998754 456999999999999999999999
Q ss_pred Cccc----------cccccccCC-ceEEcCeEEEcCCCCCC
Q 017058 139 STQL----------RNVKIKSLP-CFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 139 ~~~~----------~~~~l~~~~-v~~~~G~I~v~~~~~~~ 168 (378)
.... ...+|.+++ +++++|||||+++++++
T Consensus 81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~ 121 (123)
T cd03542 81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVA 121 (123)
T ss_pred cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCC
Confidence 6321 135788886 45668999999987654
No 24
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.93 E-value=6.2e-26 Score=182.22 Aligned_cols=96 Identities=27% Similarity=0.530 Sum_probs=90.6
Q ss_pred eEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecCC
Q 017058 61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 139 (378)
Q Consensus 61 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~ 139 (378)
|++||.++||++|+.+.+++.|++++|+|. +|+++||.|+|||+|++|+.|.+.++.|+||||||+||+ +|+|+.+|.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~ 79 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA 79 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence 899999999999999999999999999997 669999999999999999999888899999999999997 999999987
Q ss_pred ccccccccccCCceEEcCeEEE
Q 017058 140 TQLRNVKIKSLPCFEQEGMIWI 161 (378)
Q Consensus 140 ~~~~~~~l~~~~v~~~~G~I~v 161 (378)
. ..|++||+++++|.|||
T Consensus 80 ~----~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 80 T----EPLKTYPVKVEDGDVYV 97 (98)
T ss_pred C----CCcceEeEEEECCEEEE
Confidence 4 36999999999999998
No 25
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.93 E-value=1.1e-25 Score=180.84 Aligned_cols=97 Identities=21% Similarity=0.459 Sum_probs=89.2
Q ss_pred eEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecCC
Q 017058 61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 139 (378)
Q Consensus 61 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~ 139 (378)
|+.||.++||++|+.+.+++.|++++|+|..+|+++|+.|+|||||++|+.|.+.++.|+||||||+||+ +|.+.. |.
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~ 79 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PD 79 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CC
Confidence 8999999999999899999999999999988899999999999999999999999999999999999996 888764 43
Q ss_pred ccccccccccCCceEEcCeEEEc
Q 017058 140 TQLRNVKIKSLPCFEQEGMIWIW 162 (378)
Q Consensus 140 ~~~~~~~l~~~~v~~~~G~I~v~ 162 (378)
. .+|++||+++++|.|||.
T Consensus 80 ~----~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 80 E----GCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred C----CccceEeEEEECCEEEEC
Confidence 2 369999999999999984
No 26
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.93 E-value=1.7e-25 Score=182.95 Aligned_cols=102 Identities=21% Similarity=0.352 Sum_probs=92.0
Q ss_pred eEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecCC
Q 017058 61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 139 (378)
Q Consensus 61 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~ 139 (378)
|+.||.++||++|+.+.+++.+.+++|+|..+|+++|+.|+|||||++|+.|..+++.|+||||||+||+ +|.|.. |.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~ 79 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PR 79 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CC
Confidence 8899999999999999999999989999989999999999999999999999988889999999999996 677664 32
Q ss_pred ccccccccccCCceEEcCeEEEcCCCCC
Q 017058 140 TQLRNVKIKSLPCFEQEGMIWIWPGDEP 167 (378)
Q Consensus 140 ~~~~~~~l~~~~v~~~~G~I~v~~~~~~ 167 (378)
..+|++|||++++|.|||+++..+
T Consensus 80 ----~~~L~~~~v~v~~g~v~v~~~~~~ 103 (108)
T cd03474 80 ----DCRLARYPVKVEGGDILVDTEGVL 103 (108)
T ss_pred ----CCccceEeEEEECCEEEEeCCCcC
Confidence 347999999999999999997544
No 27
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.92 E-value=7.9e-25 Score=176.86 Aligned_cols=100 Identities=20% Similarity=0.369 Sum_probs=93.0
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecC
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 138 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P 138 (378)
.|+.+|..+||++|..+.+++.|.+++|+|..+|+++|++|+|||+|++|+.|.+.++.|+||+|||+||+ ||+|+..|
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p 80 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP 80 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence 39999999999999999999999999999977899999999999999999999999999999999999995 99999988
Q ss_pred CccccccccccCCceEEcCeEEEcC
Q 017058 139 STQLRNVKIKSLPCFEQEGMIWIWP 163 (378)
Q Consensus 139 ~~~~~~~~l~~~~v~~~~G~I~v~~ 163 (378)
... .|++|||++++|.|||.+
T Consensus 81 ~~~----~l~~y~v~v~~g~v~V~~ 101 (101)
T TIGR02377 81 VCV----NLKTYPVKVVDGAVYVDI 101 (101)
T ss_pred ccC----CcceEeEEEECCEEEEeC
Confidence 643 599999999999999953
No 28
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.92 E-value=1e-24 Score=176.82 Aligned_cols=97 Identities=23% Similarity=0.297 Sum_probs=88.1
Q ss_pred eEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCC-CCCcccc----CCeeecCCCCeEEc-CCCce
Q 017058 61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYS-TDGKC 134 (378)
Q Consensus 61 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~-L~~g~~~----~~~l~CpyHgw~f~-~~G~~ 134 (378)
|+.||.++||++|+.+.+++.|++++|+|..+|+++|+.|+|||++++ |+.|.+. ++.|+||||||+|| .+|+|
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~ 80 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC 80 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence 899999999999999999999999999998777999999999999997 7888764 34899999999999 59999
Q ss_pred eecCCccccccccccCCceEEcCeEEEc
Q 017058 135 EKMPSTQLRNVKIKSLPCFEQEGMIWIW 162 (378)
Q Consensus 135 ~~~P~~~~~~~~l~~~~v~~~~G~I~v~ 162 (378)
+..|.. +|++|||++++|.|||.
T Consensus 81 ~~~p~~-----~l~~y~v~~~~g~v~v~ 103 (103)
T cd03529 81 LEDEDV-----SVATFPVRVEDGEVYVK 103 (103)
T ss_pred cCCCCc-----cEeeEeEEEECCEEEEC
Confidence 998853 69999999999999983
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.91 E-value=1.3e-24 Score=176.97 Aligned_cols=99 Identities=23% Similarity=0.412 Sum_probs=90.4
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCC-CCCCCCccccCCe----eecCCCCeEEcC-CCc
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHR-ACPLHLGSVNEGR----IQCPYHGWEYST-DGK 133 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHr-g~~L~~g~~~~~~----l~CpyHgw~f~~-~G~ 133 (378)
.|++||.++||++|+.+.+++.|.+++|+|..+|+++|+.|+|||+ +.+|+.|.+.++. |+||||||+||+ +|+
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 80 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR 80 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence 4999999999999999999999999999998789999999999999 8999999876665 999999999996 999
Q ss_pred eeecCCccccccccccCCceEEcCeEEEcC
Q 017058 134 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP 163 (378)
Q Consensus 134 ~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~ 163 (378)
|+..|. .+|++||+++++|.|||.+
T Consensus 81 ~~~~~~-----~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 81 CLEDDS-----GSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccCCCC-----ccEeeEeEEEECCEEEEeC
Confidence 998764 3699999999999999964
No 30
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.91 E-value=3.2e-24 Score=171.34 Aligned_cols=93 Identities=26% Similarity=0.502 Sum_probs=87.2
Q ss_pred EEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecCCcc
Q 017058 63 PVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ 141 (378)
Q Consensus 63 ~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~~~ 141 (378)
.||.++||++|+.+.+++.|.+++|+|. +|+++|+.|+|||+|++|+.|.+.++.|+||||||+||+ +|+|+..|...
T Consensus 2 ~v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~ 80 (95)
T cd03478 2 VVCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPALD 80 (95)
T ss_pred ceeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCccC
Confidence 3789999999999999999999999997 899999999999999999999999999999999999996 99999999753
Q ss_pred ccccccccCCceEEcCeEE
Q 017058 142 LRNVKIKSLPCFEQEGMIW 160 (378)
Q Consensus 142 ~~~~~l~~~~v~~~~G~I~ 160 (378)
.|++||+++++|.||
T Consensus 81 ----~l~~~~v~~~~g~i~ 95 (95)
T cd03478 81 ----SLPCYEVEVEDGRVY 95 (95)
T ss_pred ----CcceEEEEEECCEEC
Confidence 599999999999997
No 31
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.90 E-value=6.4e-24 Score=173.07 Aligned_cols=100 Identities=20% Similarity=0.364 Sum_probs=90.7
Q ss_pred eEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccC-CeeecCCCCeEEcC-CCceeecC
Q 017058 61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYST-DGKCEKMP 138 (378)
Q Consensus 61 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~-~~l~CpyHgw~f~~-~G~~~~~P 138 (378)
|+.||..+||++|..+.+.+. .+++|+|. +|+++|++|+|||+|++|+.|.+++ +.|+||+|||+||. +|+|+..|
T Consensus 3 ~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~-~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p 80 (106)
T PRK09965 3 RIYACPVADLPEGEALRVDTS-PVIALFNV-GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLP 80 (106)
T ss_pred cEEeeeHHHcCCCCeEEEeCC-CeEEEEEE-CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCCC
Confidence 889999999999988888876 88999985 9999999999999999999999988 79999999999996 99999887
Q ss_pred CccccccccccCCceEEcCeEEEcCCCC
Q 017058 139 STQLRNVKIKSLPCFEQEGMIWIWPGDE 166 (378)
Q Consensus 139 ~~~~~~~~l~~~~v~~~~G~I~v~~~~~ 166 (378)
.. .+|++|++++++|.|||.+...
T Consensus 81 ~~----~~l~~y~v~v~~g~v~v~~~~~ 104 (106)
T PRK09965 81 AT----DPLRTYPVHVEGGDIFIDLPEA 104 (106)
T ss_pred CC----CCcceEeEEEECCEEEEEccCC
Confidence 53 3699999999999999988643
No 32
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.88 E-value=2.8e-22 Score=162.31 Aligned_cols=98 Identities=28% Similarity=0.612 Sum_probs=91.5
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCC-CCCCCCCccccCC----eeecCCCCeEEcC-CCc
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSVNEG----RIQCPYHGWEYST-DGK 133 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpH-rg~~L~~g~~~~~----~l~CpyHgw~f~~-~G~ 133 (378)
.|..||..+||++|..+.+.+.|.+|+|||..+|+++|++|+||| ++++|+.|.+.+. .+.||.|+|.||+ +|+
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~ 80 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE 80 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence 599999999999999999999999999999889999999999999 8999999998876 9999999999996 999
Q ss_pred eeecCCccccccccccCCceEEcCeEEEc
Q 017058 134 CEKMPSTQLRNVKIKSLPCFEQEGMIWIW 162 (378)
Q Consensus 134 ~~~~P~~~~~~~~l~~~~v~~~~G~I~v~ 162 (378)
|+..|. .+|++|||++++|.|||.
T Consensus 81 ~~~~~~-----~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 81 CLEDPD-----VSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp ESSECS-----EBSBEEEEEECTTEEEEE
T ss_pred cCCCCC-----CcEEeEEEEEECCEEEEC
Confidence 998765 369999999999999984
No 33
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.88 E-value=1.9e-22 Score=161.51 Aligned_cols=93 Identities=31% Similarity=0.661 Sum_probs=79.7
Q ss_pred ceEEEEecCCCCC-CCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcc--ccCCeeecCCCCeEEcCC-Ccee
Q 017058 60 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYSTD-GKCE 135 (378)
Q Consensus 60 ~W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~~-G~~~ 135 (378)
.|++||+++||++ |+...+.+ +...++++..+|+++|+.|+|||+|++|+.|. .+++.|+||||||+||.+ |+|+
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV 79 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence 5999999999997 88889999 55555556789999999999999999999994 456899999999999975 9999
Q ss_pred ecCCccccccccccCCceEEcC
Q 017058 136 KMPSTQLRNVKIKSLPCFEQEG 157 (378)
Q Consensus 136 ~~P~~~~~~~~l~~~~v~~~~G 157 (378)
.+|... .++.|||+++++
T Consensus 80 ~~p~~~----~l~~~~v~ve~~ 97 (97)
T PF00355_consen 80 GGPAPR----PLPLYPVKVEGD 97 (97)
T ss_dssp ESTTCS----BSTEEEEEEETT
T ss_pred cCCCCC----CcCCCCeEEeCC
Confidence 999864 589999988763
No 34
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.87 E-value=9.1e-22 Score=160.63 Aligned_cols=98 Identities=20% Similarity=0.246 Sum_probs=87.7
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEe-CCCcEEEEccCCCCCCCC-CCCccccC--C--eeecCCCCeEEcC-CC
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVNE--G--RIQCPYHGWEYST-DG 132 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~-~~G~~~a~~n~CpHrg~~-L~~g~~~~--~--~l~CpyHgw~f~~-~G 132 (378)
.|..||..+||++|+.+.+.+.|++|+|+|. .+|+++|++|+|||.+++ |+.|.+.+ + .|+||+|||+||+ +|
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 4999999999999999999999999999995 589999999999999985 99998742 2 4999999999995 99
Q ss_pred ceeecCCccccccccccCCceEEcCeEEEc
Q 017058 133 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 162 (378)
Q Consensus 133 ~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~ 162 (378)
+|+..|.. .|++|||++++|.|||.
T Consensus 83 ~~~~~~~~-----~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDEQF-----SVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCCCc-----cEeeEeEEEECCEEEEe
Confidence 99986653 69999999999999984
No 35
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.86 E-value=1.6e-21 Score=156.57 Aligned_cols=95 Identities=25% Similarity=0.472 Sum_probs=87.5
Q ss_pred eEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecCC
Q 017058 61 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 139 (378)
Q Consensus 61 W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~ 139 (378)
|++++..++|++|+...+.+.+.+++|+|..+|+++|+.|+|||+|++|..|.+.++.|+||+|||+||+ ||+|+..|.
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~ 80 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA 80 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence 8899999999999999999999999999988899999999999999999999888999999999999997 999999986
Q ss_pred ccccccccccCCceEEc-CeE
Q 017058 140 TQLRNVKIKSLPCFEQE-GMI 159 (378)
Q Consensus 140 ~~~~~~~l~~~~v~~~~-G~I 159 (378)
. ..|++|++++.+ +.|
T Consensus 81 ~----~~l~~~~v~~~~~~~~ 97 (98)
T cd03467 81 P----RPLPKYPVKVEGDGVV 97 (98)
T ss_pred C----CCcCEEEEEEeCCceE
Confidence 3 469999999984 444
No 36
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.85 E-value=3.1e-21 Score=156.67 Aligned_cols=101 Identities=23% Similarity=0.432 Sum_probs=90.2
Q ss_pred CceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCC-eeecCCCCeEEcC-CCceee
Q 017058 59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG-RIQCPYHGWEYST-DGKCEK 136 (378)
Q Consensus 59 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~-~l~CpyHgw~f~~-~G~~~~ 136 (378)
..|+.+|..++|+++..+.+.+.+..+++++..+|+++|+.|+|||.+++|+.|.+.+. .|+||.|+|.||+ ||+|+.
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~ 82 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE 82 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence 47999999999999888888884436777777899999999999999999999999986 5999999999995 999999
Q ss_pred cCCccccccccccCCceEEcCeEEEcC
Q 017058 137 MPSTQLRNVKIKSLPCFEQEGMIWIWP 163 (378)
Q Consensus 137 ~P~~~~~~~~l~~~~v~~~~G~I~v~~ 163 (378)
.|... .|+.||+++.+|.|||.+
T Consensus 83 ~p~~~----~l~~y~vrve~g~v~v~~ 105 (106)
T COG2146 83 PPAGK----TLKTYPVRVEGGRVFVDL 105 (106)
T ss_pred CCCCC----ceeEEeEEEECCEEEEec
Confidence 99863 199999999999999976
No 37
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.85 E-value=2.1e-21 Score=153.51 Aligned_cols=86 Identities=24% Similarity=0.403 Sum_probs=78.0
Q ss_pred EEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCcccc
Q 017058 64 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 143 (378)
Q Consensus 64 v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~ 143 (378)
+|.++||++|+.+.+.+.|++++|+|+.+|+++|+.|+|||+|++|+.|.. ++.|+||||||+||.||+|+..|...
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa~~-- 78 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPAVS-- 78 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCCCC--
Confidence 578899999999999999999999999899999999999999999998865 56999999999999999999999753
Q ss_pred ccccccCCceE
Q 017058 144 NVKIKSLPCFE 154 (378)
Q Consensus 144 ~~~l~~~~v~~ 154 (378)
.|++|++..
T Consensus 79 --~l~~y~v~~ 87 (91)
T cd03477 79 --GLKPADDAP 87 (91)
T ss_pred --CCCeeEeec
Confidence 588888764
No 38
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.80 E-value=2.1e-19 Score=150.26 Aligned_cols=95 Identities=21% Similarity=0.326 Sum_probs=85.1
Q ss_pred EEEecCCCCCCCeEEEEECC--eeEEEEEeC---------CCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-
Q 017058 63 PVAFSTDLKDDTMVPFDCFE--EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST- 130 (378)
Q Consensus 63 ~v~~~~el~~g~~~~~~~~g--~~vvv~R~~---------~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~- 130 (378)
.||..++|++|+.+.+++.+ .+++|+|.. +|+++|++|+|||+|++|+.+. +++.|+||+|||+||.
T Consensus 5 ~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~ 83 (126)
T cd03476 5 KVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPA 83 (126)
T ss_pred EEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCC
Confidence 68999999999999999887 889999964 7999999999999999999977 7789999999999996
Q ss_pred -CCceeecCCccccccccccCCceEE--cCeEEEc
Q 017058 131 -DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 162 (378)
Q Consensus 131 -~G~~~~~P~~~~~~~~l~~~~v~~~--~G~I~v~ 162 (378)
+|+|+..|.. ..|+.||++++ +|.|||.
T Consensus 84 tgG~~~~gPa~----~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 84 RGGQMVSGQAT----QNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCeEEcCCCC----CCCCeEEEEEECCCCEEEEE
Confidence 5799988864 36999999999 9999984
No 39
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.78 E-value=3.7e-18 Score=152.41 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=110.8
Q ss_pred EEEEecChhhhhhcccccCCCCCcCcccccCCCCC---cceeeeecCCCCC-CceecC--------C------CCcceec
Q 017058 188 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV---PSLVKFLTPASGL-QGYWDP--------Y------PIDMEFR 249 (378)
Q Consensus 188 ~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~--------~------~~~~~~~ 249 (378)
.++++|||++++||++|++|++|||+++++..... +...++.....+. ...+.. . .....|.
T Consensus 5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (196)
T cd08878 5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVPRGVTYRRWREDEDPPPFGFEGPVDRWRVIEFL 84 (196)
T ss_pred cEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeCCEEEEEEEecCCCCCCCCCCCCccEEEEEEEE
Confidence 46789999999999999999999999999864321 1111111111010 000000 0 0124578
Q ss_pred CCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhc--cCchhHHHHHHHHHhHHHhhh
Q 017058 250 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL--KHVPFMQYLWRHFAEQVLNED 327 (378)
Q Consensus 250 ~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~V~~ED 327 (378)
+|+++...+....++. ......+..++.++|+++++|++++.+++++.... ...+.+...+..+..+|+.||
T Consensus 85 ~P~~~~~~~~~~~~~~------~~~~~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~eD 158 (196)
T cd08878 85 LPNVLLIDPGVAPAGT------REQGVRMRVTHWITPIDETTTHYFWFFVRNFAPDEEKKDDEELTETLRSGLSGAFNED 158 (196)
T ss_pred CCEEEEEecccccCCc------CCCcceEEEEEEEccCCCCeEEEEEEeccCCCCCccccCCHHHHHHHHHHhhhhchhH
Confidence 8987765544332221 01112455678889999999999998887764320 011233344445778999999
Q ss_pred HHHHHHHHhhccCCCCcCCcccCCCHHHHHHHHHHHHH
Q 017058 328 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 365 (378)
Q Consensus 328 ~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rr~l~~l 365 (378)
+.|+|+||+++... ...+.+..+|+++++||||++++
T Consensus 159 ~~i~e~q~~~~~~~-~~~~~l~~~D~~~~~~Rr~l~~~ 195 (196)
T cd08878 159 KEAVEAQQRIIDRD-PTREHLGLSDKGIVRFRRLLRRL 195 (196)
T ss_pred HHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHh
Confidence 99999999998764 23456677999999999999875
No 40
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.77 E-value=1.8e-18 Score=143.71 Aligned_cols=90 Identities=17% Similarity=0.345 Sum_probs=74.5
Q ss_pred CCCCeEEEE-ECCeeEEEEEeCCCcE--EEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCcccccccc
Q 017058 71 KDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKI 147 (378)
Q Consensus 71 ~~g~~~~~~-~~g~~vvv~R~~~G~~--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l 147 (378)
.+|++..+. ..+.+.++.+..+|++ +|++|+|||+|++|..+.. ++.|+||+|||+||.+|+++..|.. ..|
T Consensus 21 ~~~~~~~~~~~~~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa~----~~L 95 (126)
T cd03471 21 NPGDRSLVQGLKGDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPAP----LSL 95 (126)
T ss_pred CCCCeEEEEEecCCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCCC----CCC
Confidence 367777776 4555555556679977 7999999999999998754 5799999999999999999988864 369
Q ss_pred ccCCceEEcCeEEEcCCC
Q 017058 148 KSLPCFEQEGMIWIWPGD 165 (378)
Q Consensus 148 ~~~~v~~~~G~I~v~~~~ 165 (378)
+.|+|++++|.|||.+..
T Consensus 96 ~~y~V~vedg~I~V~~~~ 113 (126)
T cd03471 96 ALVHATVDDDKVVLSPWT 113 (126)
T ss_pred ceEeEEEECCEEEEEECc
Confidence 999999999999997544
No 41
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.72 E-value=2.9e-17 Score=137.71 Aligned_cols=94 Identities=21% Similarity=0.355 Sum_probs=81.4
Q ss_pred EEEecCCCCCCCeEEEEECC--eeEEEEEe---------CCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCC
Q 017058 63 PVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 131 (378)
Q Consensus 63 ~v~~~~el~~g~~~~~~~~g--~~vvv~R~---------~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~ 131 (378)
.||..+||++|+.+.+.+.+ .+++|+|. .+|+++|++|+|||.|++|+.+. .+..|.||+|||+||.+
T Consensus 8 ~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~ 86 (129)
T TIGR02694 8 RVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPE 86 (129)
T ss_pred EEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCC
Confidence 68999999999999999765 47888883 58999999999999999999875 67899999999999974
Q ss_pred --CceeecCCccccccccccCCceEE-cCeEEE
Q 017058 132 --GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 161 (378)
Q Consensus 132 --G~~~~~P~~~~~~~~l~~~~v~~~-~G~I~v 161 (378)
|+|+..|.. ..|++||+++. +|.||.
T Consensus 87 tgG~~~~gP~~----~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 87 KGGQQVWGQAT----QNLPQIVLRVADNGDIFA 115 (129)
T ss_pred CCCcEECCCCC----CCCCeeEEEEECCCeEEE
Confidence 699988864 36999999997 599994
No 42
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.71 E-value=2.8e-17 Score=131.57 Aligned_cols=72 Identities=15% Similarity=0.335 Sum_probs=65.9
Q ss_pred cCCCCCCCeEEEEE-CCeeEEEEEeCCCcEEEEccCCCCCCCCCCCc--cccCCeeecCCCCeEEcC-CCceeecCC
Q 017058 67 STDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYST-DGKCEKMPS 139 (378)
Q Consensus 67 ~~el~~g~~~~~~~-~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g--~~~~~~l~CpyHgw~f~~-~G~~~~~P~ 139 (378)
..+|++|..+.+.+ .|.+|+|+|. +|+++|+.|+|||++++|+.| .++++.|+||+|||+||+ +|+++..|.
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~-~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~ 89 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS-KSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPD 89 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE-CCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCc
Confidence 47889999999999 9999999995 899999999999999999994 588899999999999995 999998665
No 43
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=99.69 E-value=4.1e-16 Score=138.26 Aligned_cols=161 Identities=20% Similarity=0.192 Sum_probs=99.5
Q ss_pred EEEEEecChhhhhhcccccCCCCCcCcccccCCC-----CCcceeeeecC----CCCCCceec-------------CCCC
Q 017058 187 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGW-----SVPSLVKFLTP----ASGLQGYWD-------------PYPI 244 (378)
Q Consensus 187 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~-------------~~~~ 244 (378)
..++++||||+++||++|+||++++|+++++... ..+. .....+ .......|. ....
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGDH-YRVDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGGY 81 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccCCc-eEEEeccCCCCChhhcccchhhhcccccccccccCe
Confidence 4578999999999999999999999999987421 1111 111110 000000000 0011
Q ss_pred cceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhh-ccCchhHHHHHHHHHhHH
Q 017058 245 DMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-LKHVPFMQYLWRHFAEQV 323 (378)
Q Consensus 245 ~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V 323 (378)
...+.+||+++.... ....++.+.|+++++|++.+.++...... ..........+..+...|
T Consensus 82 ~~~~~fPn~~~~~~~-----------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (188)
T cd00680 82 LYLYLFPNLMIGLYP-----------------DSLQVQQFVPIGPNKTRLEVRLYRPKDEDAREEFDAELESLAGILRQV 144 (188)
T ss_pred EEEEECCcEeeeecC-----------------CEEEEEEEEecCCCcEEEEEEEEEecccccchhhHHHHHHhHHHHHHH
Confidence 245578887754421 23456678999999999999887653321 011111111222356889
Q ss_pred HhhhHHHHHHHHhhccCCCCcCCcccCCCHHHHHHHHHHHHH
Q 017058 324 LNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 365 (378)
Q Consensus 324 ~~ED~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rr~l~~l 365 (378)
+.||+.++|+||+++.++.............+..|++|+++.
T Consensus 145 ~~ED~~~~e~~Q~gl~s~~~~~~~l~~~E~~i~~f~~~~~~~ 186 (188)
T cd00680 145 LDEDIELCERIQRGLRSGAFRGGPLSPLEEGIRHFHRWLRRA 186 (188)
T ss_pred HHHHHHHHHHHhccccCCcCCCCCCCcccccHHHHHHHHHHh
Confidence 999999999999999987543333334456888888987754
No 44
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.68 E-value=2.2e-16 Score=132.06 Aligned_cols=92 Identities=21% Similarity=0.324 Sum_probs=81.2
Q ss_pred ecCCCCCCCeEEEEECCeeEEEEEeC----------------------------CCcEEEEccCCCCCCCCCCCccccCC
Q 017058 66 FSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------DGIPGCVQNTCAHRACPLHLGSVNEG 117 (378)
Q Consensus 66 ~~~el~~g~~~~~~~~g~~vvv~R~~----------------------------~G~~~a~~n~CpHrg~~L~~g~~~~~ 117 (378)
..++|++|+.+++...|.+|+|+|.. +|+++|+.++|||.||.+..+.+.++
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~ 84 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG 84 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence 56789999999999999999999952 67999999999999999988776788
Q ss_pred eeecCCCCeEEcCCCceeecCCccccccccccCCceEEc-CeEEE
Q 017058 118 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIWI 161 (378)
Q Consensus 118 ~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~-G~I~v 161 (378)
.+.||+|||+||.+|+.+..|+. ..|+.||++..+ +.|+|
T Consensus 85 ~~~CPcHgs~Fdl~G~~~~gPa~----~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 85 GFFCPCHGSHYDASGRIRKGPAP----LNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred EEEecCcCCEECCCCeEecCCCC----CCCCeeeEEEecCCEEEe
Confidence 99999999999999999998874 469999998776 67765
No 45
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.62 E-value=1.2e-14 Score=130.46 Aligned_cols=163 Identities=11% Similarity=0.050 Sum_probs=97.0
Q ss_pred EEEEEEecChhhhhhcccccCCCCCcCcccccCCCCC----------cceeeeecCCC---CCCceecC---------CC
Q 017058 186 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV----------PSLVKFLTPAS---GLQGYWDP---------YP 243 (378)
Q Consensus 186 ~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~---------~~ 243 (378)
...++++||||+++||++|+||++++|++|+...... +.......+.. ........ ..
T Consensus 3 ~~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (190)
T cd08885 3 REEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRR 82 (190)
T ss_pred eeeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcc
Confidence 3467899999999999999999999999988642110 00000001100 00000000 00
Q ss_pred CcceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhc-cCchhHHHHHHHHHhH
Q 017058 244 IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL-KHVPFMQYLWRHFAEQ 322 (378)
Q Consensus 244 ~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 322 (378)
....+.+||+++.... ....+..+.|+++++|++.+.++....... .........+..+...
T Consensus 83 ~~~~~iFPN~~i~~~~-----------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (190)
T cd08885 83 LVLFAIFPTHLLALTP-----------------DYVWWLSLLPEGAGRVRVRWGVLVAPEAADDPEAAEYIAELKALLDA 145 (190)
T ss_pred eEEEEECCcEEEEecC-----------------CeEEEEEEEecCCCeEEEEEEEEEcchhcccchhHHHHHHHHHHHHH
Confidence 1133467887765421 123455678999999999887664322110 0111112222335578
Q ss_pred HHhhhHHHHHHHHhhccCCCCcCCcccCCCHHHHHHHHHHHHH
Q 017058 323 VLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 365 (378)
Q Consensus 323 V~~ED~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rr~l~~l 365 (378)
|+.||..+||++|++|.++..........+..+..|.+|+.+.
T Consensus 146 v~~ED~~~~e~~Q~Gl~S~~~~~g~l~~~E~~i~~fh~~l~~~ 188 (190)
T cd08885 146 INDEDRLVVEGVQRGLGSRFAVPGRLSHLERPIWQFQRYLASR 188 (190)
T ss_pred HHHHHHHHHHHhcccccCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 9999999999999999986543322234577888899997753
No 46
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.58 E-value=2.2e-14 Score=127.91 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=97.8
Q ss_pred EEEEEecChhhhhhcccccCCCCCcCcccccCCCCCc-ceeeeecCCCC--------------CCceecCC-CC-cceec
Q 017058 187 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVP-SLVKFLTPASG--------------LQGYWDPY-PI-DMEFR 249 (378)
Q Consensus 187 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~-~~-~~~~~ 249 (378)
..++++||||+++||++|+||++++|+++++...... ........... ...-|... .. ...+.
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDNLSVYDAFGPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIYTL 83 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcccccCCceEEeccCCeeeeecchhhHHHHhcCChhHCCccCCeeEEEEE
Confidence 4678999999999999999999999999986421101 01011000000 00001000 00 12345
Q ss_pred CCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCc-hhHHHHHHHHH-hHHHhhh
Q 017058 250 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHV-PFMQYLWRHFA-EQVLNED 327 (378)
Q Consensus 250 ~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~V~~ED 327 (378)
+||+++.... ....+..+.|.++++|.+.+.++.......... ....... .+. ..|..||
T Consensus 84 FPN~~i~~~~-----------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ED 145 (185)
T cd08887 84 FPNVSLLVQP-----------------DHLEIIQIEPGSPDRTRVTVYLLIPPPPDTEEARAYWDKNW-DFLMAVVLDED 145 (185)
T ss_pred CCceEEEecC-----------------CeEEEEEEEcCCCCceEEEEEEEecCCCCcHHHHHHHHHHH-HHHHhhhHHHH
Confidence 7887765421 234456679999999999887764322111111 1111122 233 7899999
Q ss_pred HHHHHHHHhhccCCCCcCCcccCCCHHHHHHHHHHHHH
Q 017058 328 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 365 (378)
Q Consensus 328 ~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rr~l~~l 365 (378)
..++|.+|++|.++...+......+..+..|.+|+++.
T Consensus 146 ~~~~e~~Q~Gl~s~~~~~~~l~~~E~~i~~fh~~~~~~ 183 (185)
T cd08887 146 FEVAEEIQRGLASGANDHLTFGRNESALQHFHRWLERA 183 (185)
T ss_pred HHHHHHHhhhhhcCCCCceEeecCCHHHHHHHHHHHHH
Confidence 99999999999987654434446677888999998754
No 47
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=99.58 E-value=3.9e-14 Score=125.69 Aligned_cols=160 Identities=14% Similarity=0.151 Sum_probs=96.3
Q ss_pred EEEEEEecChhhhhhcccccCCCCCcCcccccCCCCCcceeee-------ecCCC-CCCceecCCC--CcceecCCeeEE
Q 017058 186 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKF-------LTPAS-GLQGYWDPYP--IDMEFRPPCMVL 255 (378)
Q Consensus 186 ~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~--~~~~~~~P~~~~ 255 (378)
...+++++|||+++||++|+||++++|++++............ ..+.. .....+.... ....+.+||+++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~i 82 (175)
T cd08883 3 RREYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDYATYRTELFEYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNLML 82 (175)
T ss_pred cEEeeeecCceEEehhcCCcccCcccchhHHhhcccCceEEEEcCcEEEEEecccCCCCccccccCcCeEEEEECCCEee
Confidence 3467889999999999999999999999988542110000000 00000 0011111111 113456898876
Q ss_pred EeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHhHHHhhhHHHHHHHH
Q 017058 256 STIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQ 335 (378)
Q Consensus 256 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ED~~ile~qq 335 (378)
+... ....++.+.|+++++|++.+.++..... ..........+ . .+.|+.||..|+|.+|
T Consensus 83 ~~~~-----------------~~~~~~~~~P~~p~~t~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~v~~ED~~i~e~vQ 142 (175)
T cd08883 83 NRYP-----------------PGMDVNVVLPLGPERCKVVFDYFVDDSD-GSDEAFIAESI-E-SDRVQKEDIEICESVQ 142 (175)
T ss_pred eecC-----------------CeEEEEEEEeCCCCcEEEEEEEEEeccc-cchhHHHHHHH-H-HHHHHHHHHHHHHHHh
Confidence 5421 1233455789999999998877643221 01111112222 2 5789999999999999
Q ss_pred hhccCCCCc-CCcccCCCHHHHHHHHHHHHH
Q 017058 336 ERMNNGANV-WNLPVGYDKLGVRYRLWRDAL 365 (378)
Q Consensus 336 ~~l~~g~~~-~~l~~~aD~~~v~~Rr~l~~l 365 (378)
++|.++... ..+....+..+..|++|+++.
T Consensus 143 ~Gl~S~~~~~G~l~~~~E~~v~~Fh~~l~~~ 173 (175)
T cd08883 143 RGLESGAYDPGRFSPKRENGVHHFHRLLAQA 173 (175)
T ss_pred hhhcCCCCCCCCCCCccchHHHHHHHHHHHh
Confidence 999987542 222223467888899998754
No 48
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.57 E-value=1.2e-14 Score=128.86 Aligned_cols=88 Identities=19% Similarity=0.377 Sum_probs=73.3
Q ss_pred CCCCeEEEE-ECCeeEEEEEeCCCcE--EEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCcccccccc
Q 017058 71 KDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKI 147 (378)
Q Consensus 71 ~~g~~~~~~-~~g~~vvv~R~~~G~~--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l 147 (378)
++|+...+. +.|.+.++++..+|++ +|++++|||.||+|..+..+ +.+.||+||++||.+|+.+..|.. ..|
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd~tG~~~~gPa~----~~L 147 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYDATGKVVRGPAP----LSL 147 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEeCCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEECCCCCCccCCCC----CCC
Confidence 567777766 6677744445569999 57799999999999988754 599999999999999999998874 369
Q ss_pred ccCCceEEcCeEEEcC
Q 017058 148 KSLPCFEQEGMIWIWP 163 (378)
Q Consensus 148 ~~~~v~~~~G~I~v~~ 163 (378)
+.|++++++|.|+|.+
T Consensus 148 ~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 148 ALVHVTVEDDKVLFSP 163 (178)
T ss_pred CeEeEEEECCEEEEEE
Confidence 9999999999999965
No 49
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.55 E-value=6.8e-14 Score=124.98 Aligned_cols=160 Identities=14% Similarity=0.021 Sum_probs=95.0
Q ss_pred EEEEEEecChhhhhhcccccCCCCCcCcccccCCCCCcceeeeecCC-------CCCC-ceec---CCCCcceecCCeeE
Q 017058 186 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPA-------SGLQ-GYWD---PYPIDMEFRPPCMV 254 (378)
Q Consensus 186 ~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~---~~~~~~~~~~P~~~ 254 (378)
...++++||||+++||++|+||++++|+++++............... .... .... .......+.+||++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~ 82 (182)
T cd08886 3 RLTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDMDTYKHTTHGNYSSQMANYGSAENSEYSVKPDADFAFYWLWPNTM 82 (182)
T ss_pred eEEEEeecccEEEEecCCccccCcccChhHHhcccccccEEEecCcEEEEEeccccccccccccccCcceeEEEEeCCEE
Confidence 45678999999999999999999999999885421100001000000 0000 0000 00112345678887
Q ss_pred EEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHhHHH-hhhHHHHHH
Q 017058 255 LSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLG 333 (378)
Q Consensus 255 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~ED~~ile~ 333 (378)
++... + .....++.+.|+++++|++.+.++..-. ..... ......+...|+ .||..+||+
T Consensus 83 i~~~~----~-----------~~~~~~~~~~P~~p~~t~~~~~~~~~~~--~~~~~--~~~~~~~~~~v~~~ED~~l~e~ 143 (182)
T cd08886 83 LNVYP----G-----------AGNMGVINIIPVDAETTLQHYDFYFRDE--ELTDE--EKELIEYYRQVLQPEDLELVES 143 (182)
T ss_pred EEeeC----C-----------CCeEEEEEEEeCCCCeEEEEEEEEecCC--CccHH--HHHHHHHHHHhcchhhHHHHHH
Confidence 65421 0 0123456679999999999887663211 11111 111224567787 999999999
Q ss_pred HHhhccCCCCcC-Ccc------cCCCHHHHHHHHHHHH
Q 017058 334 QQERMNNGANVW-NLP------VGYDKLGVRYRLWRDA 364 (378)
Q Consensus 334 qq~~l~~g~~~~-~l~------~~aD~~~v~~Rr~l~~ 364 (378)
+|++|.++.... .+. ...+.++..|.+|+++
T Consensus 144 vQ~Gl~S~~~~~g~l~~~~~~~~~~E~~v~~fh~~l~~ 181 (182)
T cd08886 144 VQRGLKSRAFGQGRIVVDPSGSGISEHAVHHFHGLVLE 181 (182)
T ss_pred HhcccccCCCCCceeccCcccCCccchhHHHHHHHHhc
Confidence 999999865422 222 2356788888898763
No 50
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.55 E-value=8.3e-14 Score=126.73 Aligned_cols=167 Identities=13% Similarity=0.014 Sum_probs=99.3
Q ss_pred CceEeeEEEEEEecChhhhhhcccccCCCCCcCcccccCC-----CCCcc-------eeee----------ecCCCC---
Q 017058 180 GFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG-----WSVPS-------LVKF----------LTPASG--- 234 (378)
Q Consensus 180 ~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~-----~~~~~-------~~~~----------~~~~~~--- 234 (378)
+++......++++||||+++||++|+||++++|+++.... ...+. .... .+....
T Consensus 7 ~~~~~~~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (205)
T cd08884 7 NLKVAHRISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVA 86 (205)
T ss_pred hcEEccceEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCccc
Confidence 4555566788999999999999999999999999866310 00000 0000 000000
Q ss_pred --CCceec--CCCCcceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCch
Q 017058 235 --LQGYWD--PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP 310 (378)
Q Consensus 235 --~~~~~~--~~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~ 310 (378)
..+... .......+.+||++++... ....++.+.|+++++|++.+.++......... .
T Consensus 87 p~~~~~~~~~~~~~~~~~lfPN~~~~~~~-----------------d~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~-~ 148 (205)
T cd08884 87 PPLPGLTEADDRGALYYTLYPNSFLHLHP-----------------DHVVTFRVLPLSPDETLVRCKWLVHPDAVEGV-D 148 (205)
T ss_pred CCCCCCCccccCceEEEEeCCcEEEEEcC-----------------CEEEEEEEEeCCCCceEEEEEEEECCchhccc-c
Confidence 000000 0001133467877655421 23445667999999999988876542221111 1
Q ss_pred hHHHHHHHHHhHHHhhhHHHHHHHHhhccCCCCcCCcccCCCHHHHHHHHHHHH
Q 017058 311 FMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDA 364 (378)
Q Consensus 311 ~~~~~~~~~~~~V~~ED~~ile~qq~~l~~g~~~~~l~~~aD~~~v~~Rr~l~~ 364 (378)
+.......+.+.|..||..|||.+|+++.++..........+.++..|.+|+.+
T Consensus 149 ~~~~~~~~~~~~v~~ED~~i~e~vQ~Gl~S~~~~~g~l~~~E~~v~~F~~~~~~ 202 (205)
T cd08884 149 YDLDDLVEVWDATNRQDWAICERNQRGVNSPAYRPGPYSPMEGGVLAFDRWYLE 202 (205)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcccccCCCcCCCCcCCccHHHHHHHHHHHH
Confidence 111222346789999999999999999998654322222456788888888764
No 51
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.40 E-value=1.6e-12 Score=114.82 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=78.2
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEeC----------------------------------CCcEEEEccCCCCC
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------DGIPGCVQNTCAHR 105 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~----------------------------------~G~~~a~~n~CpHr 105 (378)
.|..| ..++|++|+.+.+.+.|.+++|+|.. ++++.|+.++|||.
T Consensus 40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~ 118 (174)
T TIGR01416 40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL 118 (174)
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence 46778 79999999999999999999999851 48999999999999
Q ss_pred CCCCC-Ccccc-CCeeecCCCCeEEcCCCceeecCCccccccccccCCceEEcC
Q 017058 106 ACPLH-LGSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEG 157 (378)
Q Consensus 106 g~~L~-~g~~~-~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~G 157 (378)
||.+. .+... .+.+.||+||++||.+|+.+..|.. ..|+.||++..++
T Consensus 119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa~----~~L~~~~~~~~~~ 168 (174)
T TIGR01416 119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPAP----LNLPVPPYKFLSD 168 (174)
T ss_pred CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCCC----CCCCCCCEEEcCC
Confidence 98664 34433 5689999999999999999988874 3699999987654
No 52
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=99.38 E-value=8.3e-13 Score=118.55 Aligned_cols=159 Identities=15% Similarity=0.109 Sum_probs=95.0
Q ss_pred EEEEecChhhhhhcccccCCCCCcCcccccCCCCCcc------eeeeecCCCCCC-------------ceec--------
Q 017058 188 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPS------LVKFLTPASGLQ-------------GYWD-------- 240 (378)
Q Consensus 188 ~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~------~~~~~~~~~~~~-------------~~~~-------- 240 (378)
.++++||||+++||++|+||++++|+++++....... ......+..... ....
T Consensus 11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (209)
T PF00848_consen 11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPP 90 (209)
T ss_dssp HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred EEEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhccc
Confidence 4568999999999999999999999998653211111 111111111000 0000
Q ss_pred ------CCCCcceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHH
Q 017058 241 ------PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQY 314 (378)
Q Consensus 241 ------~~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~ 314 (378)
.......+.+||+.+.... + ...+..+.|+++++|++.+..+...... ..+.+.+
T Consensus 91 ~~~~~~~~~~~~~~iFPn~~i~~~~----~-------------~~~~~~~~P~~p~~t~~~~~~~~~~~~~--~~~~~~~ 151 (209)
T PF00848_consen 91 GLPDDQRMGYRNYVIFPNLSIIVYP----D-------------HFTVRTIIPIGPDRTEVWSWWFVPKDEG--APPEFRE 151 (209)
T ss_dssp HHHHHHHTSEEEEEETTTEEEEE-T----T-------------TTEEEEEEEESTTEEEEEEEEEEETT----STHHHHH
T ss_pred cccccccccccceeeCCCEEEEecc----c-------------ccEEEEEEECCCCeEEEEEEEEEeCCcc--cchhhHH
Confidence 0011234668888765321 1 1225677999999999998876543211 1222222
Q ss_pred HHHHHHhH---HHhhhHHHHHHHHhhccCCCC-cCCcccCCCHHHHHHHHHHHHH
Q 017058 315 LWRHFAEQ---VLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDAL 365 (378)
Q Consensus 315 ~~~~~~~~---V~~ED~~ile~qq~~l~~g~~-~~~l~~~aD~~~v~~Rr~l~~l 365 (378)
.+...... |+.||..++|++|+++.++.. ...+....|..+..|++|++++
T Consensus 152 ~~~~~~~~~~~~~~ED~~~~e~~Q~gl~s~~~~~~~~~~~~E~~v~~f~~~~~~~ 206 (209)
T PF00848_consen 152 ARIRNWDRFFGVFAEDIEIVERQQRGLRSRGFDPGRLSGTSERGVRHFHRWWRRY 206 (209)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHHHHHHTTSSTSCTSEESSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 22222223 899999999999999988543 2223457888999999887653
No 53
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=99.18 E-value=1.1e-10 Score=101.69 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=53.1
Q ss_pred CCcEEEEccCCCCCCCCCCC---------------ccccCCeeecCCCCeEEcC-CC-ceeecCCccccccccccCCceE
Q 017058 92 DGIPGCVQNTCAHRACPLHL---------------GSVNEGRIQCPYHGWEYST-DG-KCEKMPSTQLRNVKIKSLPCFE 154 (378)
Q Consensus 92 ~G~~~a~~n~CpHrg~~L~~---------------g~~~~~~l~CpyHgw~f~~-~G-~~~~~P~~~~~~~~l~~~~v~~ 154 (378)
+|+++|++++|+|+||+|.. |...++.|.||+|||+||. +| ..+..|+. ..|..|++++
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~----~pLp~~~L~~ 149 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAP----RPLPAVILEY 149 (171)
T ss_pred CCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCC----CCcCEeEEEE
Confidence 79999999999999998752 4556789999999999996 55 45555654 3589999987
Q ss_pred Ec--CeEEE
Q 017058 155 QE--GMIWI 161 (378)
Q Consensus 155 ~~--G~I~v 161 (378)
.+ |.||+
T Consensus 150 d~~~d~iyA 158 (171)
T cd03475 150 DSSTDDLYA 158 (171)
T ss_pred eCCCCcEEE
Confidence 74 78886
No 54
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=98.93 E-value=4.6e-09 Score=83.19 Aligned_cols=87 Identities=37% Similarity=0.778 Sum_probs=64.2
Q ss_pred ecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccc-hhhccCchhHHHHHHHH-HhHHHh
Q 017058 248 FRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDF-ASVLKHVPFMQYLWRHF-AEQVLN 325 (378)
Q Consensus 248 ~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~V~~ 325 (378)
|.+||++.+..... ....+..+++.+++|+|+++++||+++++.++| ....+.+| .++.+. .++|++
T Consensus 1 F~pPc~v~~~~~~~--------~~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P---~wl~H~~~n~VLd 69 (92)
T PF08417_consen 1 FIPPCLVRSTEEGP--------KKKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPAWIFKLIP---RWLSHLTSNKVLD 69 (92)
T ss_pred CCCCEEEEEecccc--------ccCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhhHHhhcCC---HHHHHHhhCcccH
Confidence 57899987761110 111233567788999999999999999999998 34444556 444444 489999
Q ss_pred hhHHHHHHHHhhccC-CCCcC
Q 017058 326 EDLRLVLGQQERMNN-GANVW 345 (378)
Q Consensus 326 ED~~ile~qq~~l~~-g~~~~ 345 (378)
||..+|..||+.+.+ |.+.|
T Consensus 70 ~Dl~lLh~Qe~~l~~~g~~~W 90 (92)
T PF08417_consen 70 QDLYLLHGQERRLAREGADNW 90 (92)
T ss_pred HHHHHHHHHHHHHHHhccCcC
Confidence 999999999999987 66665
No 55
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=98.91 E-value=8.3e-09 Score=96.35 Aligned_cols=85 Identities=9% Similarity=-0.036 Sum_probs=52.8
Q ss_pred EEEEEec--CCCCeEEEEEEeeccchhhccCc------hhHHHHHHHH--HhHHHhhhHHHHHHHHhhccCCCCcCCccc
Q 017058 280 QLHVCLP--SSRKKTRLLYRMSLDFASVLKHV------PFMQYLWRHF--AEQVLNEDLRLVLGQQERMNNGANVWNLPV 349 (378)
Q Consensus 280 ~~~~~~P--~~~~~tr~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~V~~ED~~ile~qq~~l~~g~~~~~l~~ 349 (378)
.++.+.| .++++|.+...++....+..... ...... ..+ ...|+.||..+|+.+|++|.++........
T Consensus 146 ~~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~ED~~~~e~vQ~Gl~S~~~~~~~l~ 224 (243)
T cd08882 146 LVYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDA-PELGGLGLVLDQDFSNLPAVQKGMHSRGFGGLVLA 224 (243)
T ss_pred EEEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCccccccccc-cccccccchhHhHHHHHHHHHHHhccCCCCCcccC
Confidence 3455677 59999998877654332211100 001111 122 368999999999999999998654322222
Q ss_pred CCC-HHHHHHHHHHHHH
Q 017058 350 GYD-KLGVRYRLWRDAL 365 (378)
Q Consensus 350 ~aD-~~~v~~Rr~l~~l 365 (378)
... ..+..|.+|++++
T Consensus 225 ~~EE~~I~~FH~~l~~~ 241 (243)
T cd08882 225 NQEESRIRHFHEVLDDY 241 (243)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 333 7888888998764
No 56
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=98.89 E-value=6.7e-09 Score=95.68 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=77.2
Q ss_pred EEEEEecChhhhhhcccccCCCCCcCc--ccccCCC-CCc--ceeeeec-------CCCCCC----c-------------
Q 017058 187 IVMELPIEHGLLLDNLLDLAHAPFTHT--STFAKGW-SVP--SLVKFLT-------PASGLQ----G------------- 237 (378)
Q Consensus 187 ~~~~~~~nwk~~~EN~~D~~H~~~vH~--~~~~~~~-~~~--~~~~~~~-------~~~~~~----~------------- 237 (378)
.+.++++|||+.+||++|.||++++|. .||+... +.. ..+.... +..... +
T Consensus 4 ~~~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~~~~~~~~~~~~~~~g~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T cd08880 4 YRQRIPGNWKLYAENVKDPYHASLLHLFFVTFGLWRADQKSSIIDDEHGRHSVMTSTKSGDDEAAEKDSEEIRSFRDDFT 83 (222)
T ss_pred eeeecCCCcHHHHHhccCcchHHHHhhhheeeecccCCCCCceEEecCCCceEEEEecCCCcccccchHHHHHHHhhccc
Confidence 356789999999999999999999999 7886421 111 1111100 000000 0
Q ss_pred eecC--------C--C--CcceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhh
Q 017058 238 YWDP--------Y--P--IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV 305 (378)
Q Consensus 238 ~~~~--------~--~--~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~ 305 (378)
..+. + . ......+||+++... .....+..+.|.++++|++.+.++.. ..
T Consensus 84 l~d~~~~~~~~e~~~~~~~~~~~iFPNl~l~~~-----------------~~~l~v~~~~P~gpd~t~~~~~~~~~-~~- 144 (222)
T cd08880 84 LLDPSLLDGRAEFDDDITLVIQSIFPSLVVQQI-----------------QNTLAVRHIIPKGPDSFELVWTYFGY-ED- 144 (222)
T ss_pred cCCHHHHhhhHhhcCCCceEEEEECCCEEEecc-----------------CCcEEEEEEEecCCCeEEEEEEEEEe-cC-
Confidence 0000 0 0 112345677665321 11234556789999999987766532 11
Q ss_pred ccCchhH-HHHHH--HH---HhHHHhhhHHHHHHHHhhccCCCCc
Q 017058 306 LKHVPFM-QYLWR--HF---AEQVLNEDLRLVLGQQERMNNGANV 344 (378)
Q Consensus 306 ~~~~~~~-~~~~~--~~---~~~V~~ED~~ile~qq~~l~~g~~~ 344 (378)
+.+.. +.... .+ ...|..||..++|++|+++.++...
T Consensus 145 --~~~e~~~~~~~~~~~~gp~g~v~~ED~ei~e~vQ~Gl~s~~~~ 187 (222)
T cd08880 145 --DDEEMTRLRLRQANLVGPAGFVSMEDGEAIEFVQRGVEGDGGD 187 (222)
T ss_pred --CCHHHHHHHHHHhcccCCcCCCccchHHHHHHhCchhcCCCcc
Confidence 11111 11111 11 1358889999999999999876543
No 57
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=98.74 E-value=4.6e-08 Score=88.42 Aligned_cols=187 Identities=18% Similarity=0.236 Sum_probs=99.3
Q ss_pred CCceEeeEEEEEEecChhhhhhcccccCCCCCcCccccc---CCCCCc---------ceeeeecCCCCCCceecCCC---
Q 017058 179 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA---KGWSVP---------SLVKFLTPASGLQGYWDPYP--- 243 (378)
Q Consensus 179 ~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~--- 243 (378)
.+..+. .....+.+||.+.+||.+|..|+ |+|+.+.- ..+..| ..++......+++|..+.+.
T Consensus 21 ~~~~~~-g~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG~~p~d~~~~t~~v~d~~gPKG~~~~~~~~~ 98 (240)
T PF11723_consen 21 DDIVIF-GMHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLGFRPTDSDGMTKVVEDEDGPKGVMDRLTEHY 98 (240)
T ss_dssp TTEEEE-EEEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SEEEESSCCCEEEEEC-STSS-EEEE-CHHHE
T ss_pred CcceEE-eeeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccccccCCcccceEEEecCCCCceeeecccccc
Confidence 444443 56678999999999999999998 99996431 111111 12233333345555433210
Q ss_pred --C--------cc--eecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchh
Q 017058 244 --I--------DM--EFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF 311 (378)
Q Consensus 244 --~--------~~--~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~ 311 (378)
+ .. .-..|..+...+++.-||-+.....+ ..+++++-..+|+++++.+++..+.+.-........+
T Consensus 99 ~pi~e~~i~g~~~~~~~~~~~~~~~~iSiwlPgVL~V~~~P--~p~~~qyEwYVPID~~~h~Y~q~l~~~~~t~ee~~~f 176 (240)
T PF11723_consen 99 EPIFENEIDGEKVRNGNTNPVAVAMRISIWLPGVLMVENWP--YPDFTQYEWYVPIDEDTHRYFQLLGKVCPTEEERKAF 176 (240)
T ss_dssp EEESEEEETTEEEEE-BESSBE--SEEEEETTTEEEEES-S--STTEEEEEEEEEEETTEEEEEEEEEEE-SSHHHHHHH
T ss_pred eEEEecccCCceeecCCCCCceeEEEeeEeccceeecccCC--CCCeeEEEEEEEecccceeeEeEEeeecCCHHHHHHH
Confidence 0 00 00012222223333344322111110 1457777778999999999987665432111111111
Q ss_pred ---HHHHHH-HHHhHHHhhhHHHHHHHHhhccCCC-CcCCcccCCCHHHHHHHHHHHHHHcCC
Q 017058 312 ---MQYLWR-HFAEQVLNEDLRLVLGQQERMNNGA-NVWNLPVGYDKLGVRYRLWRDALEKGA 369 (378)
Q Consensus 312 ---~~~~~~-~~~~~V~~ED~~ile~qq~~l~~g~-~~~~l~~~aD~~~v~~Rr~l~~l~~g~ 369 (378)
++..+. .+...+..+|..+.|+.|+-...+. -..|....+|+.++++||..++..+|.
T Consensus 177 ~~~f~~~~~~~~l~gFN~~D~wAREamq~fY~d~~Gw~~E~L~~~D~sIi~WRkLas~~nrgI 239 (240)
T PF11723_consen 177 EYEFEEQWKPLALHGFNDDDIWAREAMQPFYADDTGWDREQLFEPDKSIIAWRKLASEHNRGI 239 (240)
T ss_dssp HHHHHHTHHHHTTTTTTHHHHHHHHHHHHHHHTSHHHHH----GGGHHHHHHHHHHHHH-SEB
T ss_pred HHHHHHHhHHhhccCCCchhHHHHHHhhhhhhccCCCCHHHhcCcchhHHHHHHHHHHhhccC
Confidence 112222 3456788999999999998776642 123677899999999999999887663
No 58
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=98.72 E-value=4.2e-08 Score=89.27 Aligned_cols=130 Identities=16% Similarity=0.091 Sum_probs=72.7
Q ss_pred EEEEEEecChhhhhhccc-ccCCCCCcCcccccCCCCCcceeeeecCCCCCCceecC-C---------CCcceecCCeeE
Q 017058 186 EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDP-Y---------PIDMEFRPPCMV 254 (378)
Q Consensus 186 ~~~~~~~~nwk~~~EN~~-D~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~P~~~ 254 (378)
..++.++||||+++||++ |+||++++|.+++........ ........+.+ +... . .....+.+|++.
T Consensus 8 ~~~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~~~~~~-~~~~~~~~g~~-~~~~~~GHg~~~~~~~~~~~~iFPN~~ 85 (206)
T cd08881 8 PQKWVIKANWKLAAENFAGDGYHTGTTHASALEAGLPPDA-ADLPPIDLGLQ-FTAPWHGHGLGFFLDSPQHGTIFPNLS 85 (206)
T ss_pred cEEEEecCcceehhhccccccccchhhhHHHHHhhCCccc-ccCCCCCCCcE-EEeCCCCeEEEEeccCcceeeECCcch
Confidence 467889999999999998 999999999998754321100 00000000100 0000 0 011223445554
Q ss_pred EEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCch-hHHHHHHHHHhH-------HHhh
Q 017058 255 LSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP-FMQYLWRHFAEQ-------VLNE 326 (378)
Q Consensus 255 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------V~~E 326 (378)
+... . ...+....|+++++|.+.+.++... +.+ ..+..+...... +-.|
T Consensus 86 ~~~~-----------------~-~~~~r~~~P~gp~~tev~~~~~~~k-----da~e~~~~~~~~~~~~~~gpaG~~~~D 142 (206)
T cd08881 86 FLPG-----------------Y-FNTLRVWHPRGPDETEVWTWTLVDK-----DAPEEVKDRVRRQYTRTFGPAGTFEQD 142 (206)
T ss_pred hhhc-----------------c-CceEEEEEeCCCCeEEEEEEEEecC-----CCCHHHHHHHHHHHHhccCCcCCCcCc
Confidence 3221 0 2345556899999999876665432 122 122222222222 3359
Q ss_pred hHHHHHHHHhhccC
Q 017058 327 DLRLVLGQQERMNN 340 (378)
Q Consensus 327 D~~ile~qq~~l~~ 340 (378)
|..++|.+|+++..
T Consensus 143 D~e~~e~~Q~g~~~ 156 (206)
T cd08881 143 DGENWEEITRVARG 156 (206)
T ss_pred hHHHHHHHHHhhcc
Confidence 99999999999874
No 59
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.72 E-value=2.1e-08 Score=89.11 Aligned_cols=78 Identities=26% Similarity=0.396 Sum_probs=60.2
Q ss_pred eeEEEEEeCCCc-----EEEEccCCCCCCCCCCC-ccccCCeeecCCCCeEEcCCCceeecCCccccccccccCCceEEc
Q 017058 83 EPWVIFRGKDGI-----PGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE 156 (378)
Q Consensus 83 ~~vvv~R~~~G~-----~~a~~n~CpHrg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~ 156 (378)
.+...++..++. +.|+..+|+|.||.+.. +....+.+.|||||.+||.+|+.+..|+.. .|..++++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA~~----~L~~~~~~~~~ 159 (177)
T COG0723 84 PKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPAPR----PLPIPPLEYDS 159 (177)
T ss_pred ccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCCCC----CcCCceEEEeC
Confidence 444444544544 45999999999999998 567789999999999999999999998853 68888887777
Q ss_pred CeEE-EcCC
Q 017058 157 GMIW-IWPG 164 (378)
Q Consensus 157 G~I~-v~~~ 164 (378)
+-++ +..+
T Consensus 160 d~~~~~~~~ 168 (177)
T COG0723 160 DKLYLIGLG 168 (177)
T ss_pred CceEEEEec
Confidence 6444 4443
No 60
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=98.61 E-value=1.1e-07 Score=88.60 Aligned_cols=31 Identities=32% Similarity=0.273 Sum_probs=28.3
Q ss_pred EEEEEecChhhhhhcccccCCCCCcCccccc
Q 017058 187 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 217 (378)
Q Consensus 187 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~ 217 (378)
.++.++||||+.+||+.|.||++++|.+++.
T Consensus 4 ~~~~~~~nWK~~~en~~d~yH~~~~H~~~~~ 34 (237)
T cd08879 4 HRYRYRGNWKLQLENGTDGYHPPFVHASYVA 34 (237)
T ss_pred eEEEeeceEEEEeeecCccccCccccHHHHH
Confidence 4678999999999999999999999998874
No 61
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=98.43 E-value=4.6e-07 Score=85.75 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=52.0
Q ss_pred CCCcEEEEccCCCCCCCCCCCc------c----------------------c---cCCeeecCCCCeEEcC-C-Cceeec
Q 017058 91 KDGIPGCVQNTCAHRACPLHLG------S----------------------V---NEGRIQCPYHGWEYST-D-GKCEKM 137 (378)
Q Consensus 91 ~~G~~~a~~n~CpHrg~~L~~g------~----------------------~---~~~~l~CpyHgw~f~~-~-G~~~~~ 137 (378)
.++.|.||+.+|+|.||++..- . - ..+.+.|||||.+||. + |+.+..
T Consensus 174 p~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~G 253 (321)
T TIGR03171 174 PNKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTG 253 (321)
T ss_pred CCCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCC
Confidence 4578999999999999988321 0 0 1248999999999996 3 579999
Q ss_pred CCccccccccccCCceEE--cCeEEEc
Q 017058 138 PSTQLRNVKIKSLPCFEQ--EGMIWIW 162 (378)
Q Consensus 138 P~~~~~~~~l~~~~v~~~--~G~I~v~ 162 (378)
|+.. .|..++++.. +|.|++-
T Consensus 254 PA~r----pLp~i~l~~d~~~~~l~Av 276 (321)
T TIGR03171 254 PTVR----PLPAVILEWDSSTDYLYAI 276 (321)
T ss_pred CCCC----CCCcceEEEeCCCCeEEEE
Confidence 8854 5888888776 4677763
No 62
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=98.40 E-value=3.3e-07 Score=80.44 Aligned_cols=74 Identities=27% Similarity=0.397 Sum_probs=63.5
Q ss_pred ecCCCCCCCeEEEEECCeeEEEE--------------------------EeCCCcEEEEccCCCCCCCCCCCccccCCee
Q 017058 66 FSTDLKDDTMVPFDCFEEPWVIF--------------------------RGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 119 (378)
Q Consensus 66 ~~~el~~g~~~~~~~~g~~vvv~--------------------------R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l 119 (378)
..++||+|+-++++-.|+|+++- |.++-++.++..+|.|.||-...-.++.+..
T Consensus 91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~ 170 (210)
T KOG1671|consen 91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGY 170 (210)
T ss_pred eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCce
Confidence 46788889999999999998884 3334457899999999999888777888889
Q ss_pred ecCCCCeEEcCCCceeecCC
Q 017058 120 QCPYHGWEYSTDGKCEKMPS 139 (378)
Q Consensus 120 ~CpyHgw~f~~~G~~~~~P~ 139 (378)
.|||||..||..|+..+.|+
T Consensus 171 ~CPCHGSHYdasGRIrkGPA 190 (210)
T KOG1671|consen 171 YCPCHGSHYDASGRIRKGPA 190 (210)
T ss_pred ecccccccccccCceecCCC
Confidence 99999999999999999986
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.15 E-value=0.0026 Score=63.67 Aligned_cols=38 Identities=34% Similarity=0.804 Sum_probs=34.9
Q ss_pred CCCCCCCCccccCCeeecCCCCeEEcC-CCceeecCCcc
Q 017058 104 HRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ 141 (378)
Q Consensus 104 Hrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P~~~ 141 (378)
|.|+||..|-...++++||+||..|+. +|....-|+..
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~ 39 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLD 39 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCcc
Confidence 899999999888999999999999995 99999999864
No 64
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=65.13 E-value=3.8 Score=33.27 Aligned_cols=37 Identities=32% Similarity=0.624 Sum_probs=24.2
Q ss_pred CCcEEEEccCCCCCCCCCCCcccc--CCeeecCCCCeEEcCC
Q 017058 92 DGIPGCVQNTCAHRACPLHLGSVN--EGRIQCPYHGWEYSTD 131 (378)
Q Consensus 92 ~G~~~a~~n~CpHrg~~L~~g~~~--~~~l~CpyHgw~f~~~ 131 (378)
.|++--..-.|. |||-.|... .+.+.||+||=--+.|
T Consensus 62 ~g~~e~v~~~Cr---APL~~G~LC~RrD~~kCPfHG~IIpRD 100 (110)
T PF09740_consen 62 EGEFEPVPHACR---APLPNGGLCPRRDRKKCPFHGKIIPRD 100 (110)
T ss_pred cCccCcCchhhc---CCCCCCCcCCccCcccCCCCCcccCCC
Confidence 344444444563 677777653 4678999999887753
No 65
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=59.17 E-value=2.5 Score=32.97 Aligned_cols=53 Identities=4% Similarity=0.079 Sum_probs=40.3
Q ss_pred cccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCC
Q 017058 54 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH 110 (378)
Q Consensus 54 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~ 110 (378)
.+-+...||.+-. ++|+-.+++.+|+.+..+-.+.....+|...-|++|+.++
T Consensus 2 ~~dl~g~WYVLe~----~pGEHLvlealgqrls~iWtS~~~A~~F~~~~p~~GM~V~ 54 (103)
T PF11572_consen 2 APDLSGTWYVLED----EPGEHLVLEALGQRLSGIWTSRELAQAFLARHPELGMRVS 54 (103)
T ss_dssp ---TSSSEEEEES----STT-BEEEEETTEEEEEEBSSHHHHHHHHHTSTSS--EEE
T ss_pred CCCcccceEEecC----CCCceeeHHHHhhhHHhheecHHHHHHHHHhCcccCcEee
Confidence 3456778998876 4899999999999999888877778899999999988665
No 66
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=48.38 E-value=1.1e+02 Score=24.55 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=50.5
Q ss_pred CCCCCeEEEEE--CC--eeEEEEEeCCCcEEEEccCCCCCCCCCCCcc-ccCCeeecCCCCeEEcCC------CceeecC
Q 017058 70 LKDDTMVPFDC--FE--EPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTD------GKCEKMP 138 (378)
Q Consensus 70 l~~g~~~~~~~--~g--~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~------G~~~~~P 138 (378)
|.+|+.+.+.. .| .++++++..+|++++..|.|-==+ ..|- ..++.++|-.-|-+|..+ |-|-.+|
T Consensus 2 v~Dgklh~y~y~~~G~~vrff~i~~~dg~~~va~daCeiC~---~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GGCNP~P 78 (102)
T PF10080_consen 2 VKDGKLHRYAYTDDGKEVRFFAIKKPDGSYRVAFDACEICG---PKGYYQEGDQLVCKNCGVRFNLPTIGGKSGGCNPIP 78 (102)
T ss_pred ccCCcEEEEEEcCCCEEEEEEEEECCCCCEEEEEEeccccC---CCceEEECCEEEEecCCCEEehhhcccccCCCCccC
Confidence 44555444444 22 567888889999999998874321 1121 357899999999999842 3333222
Q ss_pred CccccccccccCCceEEcCeEEEcC
Q 017058 139 STQLRNVKIKSLPCFEQEGMIWIWP 163 (378)
Q Consensus 139 ~~~~~~~~l~~~~v~~~~G~I~v~~ 163 (378)
++-.+.++.|-|..
T Consensus 79 -----------~~~~~~~~~I~I~~ 92 (102)
T PF10080_consen 79 -----------LPYTVDGGNIIIDQ 92 (102)
T ss_pred -----------CceEecCCeEEEeH
Confidence 14466778887753
No 67
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=36.78 E-value=16 Score=25.75 Aligned_cols=25 Identities=24% Similarity=0.609 Sum_probs=20.4
Q ss_pred cCCeeec-----CCCCeEEcCCCceeecCC
Q 017058 115 NEGRIQC-----PYHGWEYSTDGKCEKMPS 139 (378)
Q Consensus 115 ~~~~l~C-----pyHgw~f~~~G~~~~~P~ 139 (378)
.++.++| |||.|.|+..|.|+..+.
T Consensus 18 ~dDiVvCp~CgapyHR~C~~~~g~C~~~~c 47 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHRDCWEKAGGCINYSC 47 (54)
T ss_pred CCCEEECCCCCCcccHHHHhhCCceEeccC
Confidence 4677888 599999999999988653
No 68
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=36.61 E-value=21 Score=28.97 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=23.7
Q ss_pred ccCCCCCCCCCCCccccCCeeecCCCCeEEcCC
Q 017058 99 QNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 131 (378)
Q Consensus 99 ~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~ 131 (378)
.-+||+-|++... .+..-++|||-|-.|...
T Consensus 9 KR~Cp~CG~kFYD--Lnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYD--LNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhcc--CCCCCccCCCCCCccCcc
Confidence 4578888877663 334679999999999965
No 69
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=35.51 E-value=29 Score=29.11 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=24.6
Q ss_pred EccCCCCCCCCCCCccccCCeeecCCCCeEEc
Q 017058 98 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 129 (378)
Q Consensus 98 ~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~ 129 (378)
+...||--|+||-. .+|.+.||-||-++-
T Consensus 27 L~~hCp~Cg~PLF~---KdG~v~CPvC~~~~~ 55 (131)
T COG1645 27 LAKHCPKCGTPLFR---KDGEVFCPVCGYREV 55 (131)
T ss_pred HHhhCcccCCccee---eCCeEECCCCCceEE
Confidence 45679999999997 678899999998765
No 70
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=31.57 E-value=41 Score=24.35 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=26.6
Q ss_pred EccCCCCCCCCCCCccccCCeeecCCCCeEEcCC
Q 017058 98 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 131 (378)
Q Consensus 98 ~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~ 131 (378)
-+-.||+-|..... ...+..+.||--|..+|.|
T Consensus 27 TSq~C~~CG~~~~~-~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKK-RRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred CccCccCccccccc-ccccceEEcCCCCCEECcH
Confidence 47789988887776 4567899999999999864
No 71
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=27.60 E-value=33 Score=24.73 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=12.6
Q ss_pred CCeeecCCCCeEEcCC
Q 017058 116 EGRIQCPYHGWEYSTD 131 (378)
Q Consensus 116 ~~~l~CpyHgw~f~~~ 131 (378)
.-.|.||-||-.....
T Consensus 30 PvtI~CP~HG~~~~s~ 45 (60)
T PF05265_consen 30 PVTIRCPKHGNFTCST 45 (60)
T ss_pred ceEEECCCCCcEEecc
Confidence 4579999999887644
No 72
>PRK00420 hypothetical protein; Validated
Probab=27.24 E-value=53 Score=26.84 Aligned_cols=34 Identities=26% Similarity=0.574 Sum_probs=26.9
Q ss_pred EccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCc
Q 017058 98 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGK 133 (378)
Q Consensus 98 ~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~ 133 (378)
....||--|+||..- .++..+||-||-.+.. +|+
T Consensus 22 l~~~CP~Cg~pLf~l--k~g~~~Cp~Cg~~~~v~~~e 56 (112)
T PRK00420 22 LSKHCPVCGLPLFEL--KDGEVVCPVHGKVYIVKSDE 56 (112)
T ss_pred ccCCCCCCCCcceec--CCCceECCCCCCeeeeccHH
Confidence 567899999999843 5678999999998884 443
No 73
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=22.95 E-value=50 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.422 Sum_probs=23.6
Q ss_pred ccCCCCCCCCCCCccccCCeeecCCCCeEEcCC
Q 017058 99 QNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 131 (378)
Q Consensus 99 ~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~ 131 (378)
...||+-|++... .+..-++|||-|-.|...
T Consensus 9 Kr~Cp~cg~kFYD--Lnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYD--LNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccc--cCCCCccCCCcCCccCcc
Confidence 3578888877662 345789999999999865
No 74
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=22.19 E-value=59 Score=26.38 Aligned_cols=40 Identities=25% Similarity=0.455 Sum_probs=32.8
Q ss_pred CCCcEEEEccCCCCCCCCCCCcc--------ccCCeeecCCCCeEEcC
Q 017058 91 KDGIPGCVQNTCAHRACPLHLGS--------VNEGRIQCPYHGWEYST 130 (378)
Q Consensus 91 ~~G~~~a~~n~CpHrg~~L~~g~--------~~~~~l~CpyHgw~f~~ 130 (378)
.=|..+-+.+.|.||.||-..+. .....|-|||.-|+|-.
T Consensus 47 ~Cg~~~~~~~SCk~R~CP~C~~~~~~~W~~~~~~~ll~~~y~HvVFTl 94 (111)
T PF14319_consen 47 DCGHEKIVYNSCKNRHCPSCQAKATEQWIEKQREDLLPVPYFHVVFTL 94 (111)
T ss_pred CCCceEEecCcccCcCCCCCCChHHHHHHHHHHhhCCCCCeEEEEEcC
Confidence 36888899999999999988753 23567899999999974
No 75
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.58 E-value=65 Score=23.28 Aligned_cols=18 Identities=33% Similarity=0.787 Sum_probs=14.7
Q ss_pred ccCCeeecCCCCeEEcCC
Q 017058 114 VNEGRIQCPYHGWEYSTD 131 (378)
Q Consensus 114 ~~~~~l~CpyHgw~f~~~ 131 (378)
++.+.++|||-|-.|.++
T Consensus 44 g~~gev~CPYC~t~y~l~ 61 (62)
T COG4391 44 GDEGEVVCPYCSTRYRLN 61 (62)
T ss_pred CCCCcEecCccccEEEec
Confidence 456789999999999754
Done!