Query 017058
Match_columns 378
No_of_seqs 348 out of 2232
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 3.5E-55 1.2E-59 427.8 24.1 303 53-365 1-334 (349)
2 3n0q_A Putative aromatic-ring 100.0 4.6E-48 1.6E-52 383.5 23.9 307 21-364 19-395 (409)
3 3vca_A Ring-hydroxylating diox 100.0 5.4E-48 1.9E-52 383.3 20.9 307 21-364 21-398 (412)
4 1z01_A 2-OXO-1,2-dihydroquinol 100.0 6E-46 2.1E-50 373.7 25.2 310 25-369 23-408 (446)
5 2zyl_A Possible oxidoreductase 100.0 7.2E-46 2.5E-50 366.5 23.5 300 54-368 19-339 (386)
6 2de6_A Terminal oxygenase comp 100.0 1.1E-45 3.9E-50 366.1 22.0 296 56-370 24-377 (392)
7 3gkq_A Terminal oxygenase comp 100.0 3.8E-42 1.3E-46 334.6 24.9 298 56-371 27-379 (389)
8 3gcf_A Terminal oxygenase comp 100.0 9.6E-42 3.3E-46 332.7 24.2 299 56-373 30-384 (394)
9 2gbw_A Biphenyl 2,3-dioxygenas 100.0 1.7E-41 5.7E-46 342.2 18.4 178 21-217 15-217 (454)
10 2bmo_A Oxygenase-alpha NBDO; n 100.0 3.6E-41 1.2E-45 339.2 18.8 179 21-218 13-217 (447)
11 2b1x_A Naphthalene dioxygenase 100.0 1.2E-40 4.1E-45 337.2 18.9 178 21-217 23-226 (470)
12 3gzx_A Biphenyl dioxygenase su 100.0 2.7E-40 9.1E-45 331.7 13.3 179 21-218 35-245 (457)
13 1uli_A Biphenyl dioxygenase la 100.0 2.2E-39 7.5E-44 327.1 15.2 177 21-216 33-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 100.0 2E-28 6.9E-33 197.4 12.4 100 60-164 3-103 (103)
15 1fqt_A Rieske-type ferredoxin 100.0 5.2E-28 1.8E-32 198.0 13.6 102 60-166 5-108 (112)
16 2i7f_A Ferredoxin component of 100.0 1.4E-28 4.9E-33 200.0 9.5 102 60-166 3-106 (108)
17 1vm9_A Toluene-4-monooxygenase 100.0 4.2E-28 1.4E-32 198.3 11.9 104 60-168 1-106 (111)
18 2de6_D Ferredoxin component of 100.0 2E-28 6.9E-33 201.4 9.6 104 58-166 2-107 (115)
19 3dqy_A Toluene 1,2-dioxygenase 99.9 2.9E-28 9.8E-33 197.6 9.6 102 60-166 1-103 (106)
20 3gce_A Ferredoxin component of 99.9 2.5E-27 8.7E-32 196.6 12.5 104 59-167 9-115 (121)
21 3c0d_A Putative nitrite reduct 99.9 1.3E-27 4.4E-32 197.8 9.7 103 59-166 4-112 (119)
22 2jo6_A Nitrite reductase [NAD( 99.9 2.5E-27 8.6E-32 194.2 10.7 100 60-164 6-112 (113)
23 2jza_A Nitrite reductase [NAD( 99.9 4.9E-27 1.7E-31 197.2 12.6 104 60-168 3-113 (130)
24 3d89_A Rieske domain-containin 99.9 3.2E-27 1.1E-31 204.8 6.7 110 57-167 13-137 (157)
25 4aiv_A Probable nitrite reduct 99.9 9.9E-27 3.4E-31 192.2 8.8 101 59-164 8-116 (119)
26 1rie_A Rieske iron-sulfur prot 99.9 1.7E-22 5.8E-27 169.2 11.1 97 60-161 5-128 (129)
27 1rfs_A Rieske protein; iron-su 99.9 1.1E-22 3.6E-27 172.4 6.4 102 58-164 19-124 (139)
28 1g8k_B Arsenite oxidase; molyb 99.9 5.6E-22 1.9E-26 166.9 10.0 98 60-162 7-119 (133)
29 4aay_B AROB; oxidoreductase, r 99.8 5E-21 1.7E-25 167.9 8.4 97 61-162 51-161 (175)
30 3azc_A Cytochrome B6-F complex 99.7 3.6E-22 1.2E-26 167.3 0.0 96 66-166 22-121 (133)
31 3cx5_E Cytochrome B-C1 complex 99.8 2.5E-19 8.4E-24 158.7 12.4 103 54-161 56-184 (185)
32 2qjy_C Ubiquinol-cytochrome C 99.8 5.5E-19 1.9E-23 156.8 12.4 97 60-161 48-186 (187)
33 1pp9_E Ubiquinol-cytochrome C 99.8 3.7E-19 1.3E-23 158.7 10.7 95 63-161 74-195 (196)
34 2nwf_A Ubiquinol-cytochrome C 99.8 5.9E-19 2E-23 149.5 11.0 93 65-161 6-140 (141)
35 1nyk_A Rieske iron-sulfur prot 99.8 4.6E-19 1.6E-23 154.1 9.6 98 66-168 26-151 (165)
36 1vf5_D Rieske iron-sulfur prot 99.7 2.9E-19 9.9E-24 157.8 2.0 92 67-163 70-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.7 6.3E-18 2.2E-22 151.7 0.4 85 76-164 56-167 (204)
38 3gzx_A Biphenyl dioxygenase su 21.1 2.1E+02 0.007 27.9 7.3 55 280-339 336-398 (457)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=3.5e-55 Score=427.79 Aligned_cols=303 Identities=23% Similarity=0.430 Sum_probs=233.2
Q ss_pred ccccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCC
Q 017058 53 YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG 132 (378)
Q Consensus 53 ~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G 132 (378)
|..++++.|++||+++|| +|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||++|
T Consensus 1 m~~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G 79 (349)
T 3gke_A 1 MATFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGG 79 (349)
T ss_dssp -CCCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTC
T ss_pred CCcccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCC
Confidence 345788999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCC-cc--ccccccccCCceEEcCeEEEcCCCCC-CC-CCCCCCC--CCCCceEeeEEEEEEecChhhhhhccccc
Q 017058 133 KCEKMPS-TQ--LRNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDL 205 (378)
Q Consensus 133 ~~~~~P~-~~--~~~~~l~~~~v~~~~G~I~v~~~~~~-~~-~~l~~~~--~~~~~~~~~~~~~~~~~nwk~~~EN~~D~ 205 (378)
+|+.+|. .. ....+|++|||++++|+|||++++++ +. ..+|++. ..+++.+. ...++++||||+++||++|+
T Consensus 80 ~~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~ 158 (349)
T 3gke_A 80 QCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDL 158 (349)
T ss_dssp CEEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCG
T ss_pred CccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhcccc
Confidence 9999995 22 13578999999999999999998764 21 1245442 23567654 45679999999999999999
Q ss_pred CCCCCcCcccccCCCCCcceeeeecCCCCC-----------Cceec------CCC----CcceecCCeeEEEeeeecCCC
Q 017058 206 AHAPFTHTSTFAKGWSVPSLVKFLTPASGL-----------QGYWD------PYP----IDMEFRPPCMVLSTIGISKPG 264 (378)
Q Consensus 206 ~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~------~~~----~~~~~~~P~~~~~~~~~~~~g 264 (378)
||++++|+++++.........++.....++ ..++. ... ..++|.+|+++...+++..+|
T Consensus 159 ~H~~~~H~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~~~~~~~g 238 (349)
T 3gke_A 159 GHAQYVHRANAQTDAFDRLEREVIVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFIAVAPEG 238 (349)
T ss_dssp GGHHHHTHHHHCCTTGGGCEEEEEECSSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred ccchhccchhhcCccccCCCCEEEEcCCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEEEecccCC
Confidence 999999999998653211111111111110 00110 001 246788999987777765555
Q ss_pred CcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHhHHH-hhhHHHHHHHHhhccCCC-
Q 017058 265 KLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLGQQERMNNGA- 342 (378)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~ED~~ile~qq~~l~~g~- 342 (378)
.. .....++.+++.++|+++++||++|.+++||..++ +.+...+..+..+|| .||+.|||+||+++....
T Consensus 239 ~p-----~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d---~~~~~~~~~~~~~if~~ED~~ile~Qq~~l~~~~~ 310 (349)
T 3gke_A 239 TP-----KEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDD---PEMDGVLRSWQAQALVKEDKVVVEAIERRRAYVEA 310 (349)
T ss_dssp SC-----GGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTC---HHHHHHHHHHHHHHTTTHHHHHHHHHHHTHHHHHH
T ss_pred CC-----CCCceEEEEEEEEecCCCCeEEEEEEEEecCccCc---hhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhcCCc
Confidence 31 11224567789999999999999999999987543 223345567788999 999999999999987632
Q ss_pred -CcCCcccCCCHHHHHHHHHHHHH
Q 017058 343 -NVWNLPVGYDKLGVRYRLWRDAL 365 (378)
Q Consensus 343 -~~~~l~~~aD~~~v~~Rr~l~~l 365 (378)
...++++++|+++++||||++++
T Consensus 311 ~~~~~~~~~~D~~~v~~Rr~l~~l 334 (349)
T 3gke_A 311 NGIRPAMLSCDEAAVRVSREIEKL 334 (349)
T ss_dssp TTCCCCCCGGGHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHH
Confidence 22358999999999999999876
No 2
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=4.6e-48 Score=383.49 Aligned_cols=307 Identities=18% Similarity=0.186 Sum_probs=224.1
Q ss_pred ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058 21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ 99 (378)
Q Consensus 21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~ 99 (378)
...++|||+++|++|+++||+ +.|++||+++||+ +|++++++++|++|+|+|+.+|+++||.
T Consensus 19 lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~ 81 (409)
T 3n0q_A 19 LDQAFYTDAEVFQTDLQEIFY-----------------KEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFH 81 (409)
T ss_dssp CCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred CCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEeec
Confidence 455699999999999999974 5667999999998 5999999999999999999999999999
Q ss_pred cCCCCCCCCCCC-ccccCCeeecCCCCeEEcCCCceeecCCcc----ccccccccCCceEEcCeEEEcCCCCCCCCCCCC
Q 017058 100 NTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC 174 (378)
Q Consensus 100 n~CpHrg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~----~~~~~l~~~~v~~~~G~I~v~~~~~~~~~~l~~ 174 (378)
|+|||||++|+. |.++++.|+||||||+||+||+|+.+|... ..+.+|++|||++++|+|||+++++++ ++++
T Consensus 82 n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~--~l~~ 159 (409)
T 3n0q_A 82 NACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAP--DFER 159 (409)
T ss_dssp SCCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CCHH
T ss_pred CcCCcCcCCccCcCccCCCEEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEEECCEEEEEeCCCCC--ChHH
Confidence 999999999996 889999999999999999999999999753 246789999999999999999987654 3444
Q ss_pred CCC----------CCCceEeeEEEEEEecChhhhhhcccccCCCCCcCcccccCCCCC----------------------
Q 017058 175 LLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV---------------------- 222 (378)
Q Consensus 175 ~~~----------~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~---------------------- 222 (378)
+++ ..++.+.....++++||||+++||++|+||++++|+++++.-...
T Consensus 160 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (409)
T 3n0q_A 160 FAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRC 239 (409)
T ss_dssp HHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHHH
T ss_pred hhhhhhhhhccccCCCeEEeeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhhhh
Confidence 321 123444455678899999999999999999999999886532100
Q ss_pred -----cc-ee----------ee-ecCC------CCCCce---ecC---C--CCcceecCCeeEEEeeeecCCCCcCCCcc
Q 017058 223 -----PS-LV----------KF-LTPA------SGLQGY---WDP---Y--PIDMEFRPPCMVLSTIGISKPGKLEGQNT 271 (378)
Q Consensus 223 -----~~-~~----------~~-~~~~------~~~~~~---~~~---~--~~~~~~~~P~~~~~~~~~~~~g~~~~~~~ 271 (378)
+. .. +. ..+. .+...+ ... . .....+.+||+.+...
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~------------- 306 (409)
T 3n0q_A 240 EQAGMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL------------- 306 (409)
T ss_dssp HHTTCCCCCEECTTSSEEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC-------------
T ss_pred hccCCcceeecccccceeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC-------------
Confidence 00 00 00 0000 000000 000 0 0112355677665442
Q ss_pred ccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHhHHHhhhHHHHHHHHhhccCCCCcC-CcccC
Q 017058 272 RQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVW-NLPVG 350 (378)
Q Consensus 272 ~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ED~~ile~qq~~l~~g~~~~-~l~~~ 350 (378)
.+.+.++.+.|+++++|++.+.++...... +...+-.+.+..+.+.|+.||..|||+.|+++.++.... .++..
T Consensus 307 ----pd~~~~~~~~P~~p~~t~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~ED~~l~e~~Q~G~~s~~y~~G~~s~~ 381 (409)
T 3n0q_A 307 ----SDHSIVFRVTPISPTETEVTTKWLVHKDAV-EGVDYDLQRLTEVWIATNDEDREVVEFNQMGINSPAYEPGPYSPT 381 (409)
T ss_dssp ----SSCEEEEEEEEEETTEEEEEEEEEEETTCC-BTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBCCTT
T ss_pred ----CCEEEEEEEEECCCCeEEEEEEEEEcCccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCC
Confidence 134556778999999999998877532211 100110133445678899999999999999999875422 23334
Q ss_pred CCHHHHHHHHHHHH
Q 017058 351 YDKLGVRYRLWRDA 364 (378)
Q Consensus 351 aD~~~v~~Rr~l~~ 364 (378)
.+.++..|.+|+.+
T Consensus 382 ~E~~v~~F~~w~~~ 395 (409)
T 3n0q_A 382 QESGVLQFVEWYLS 395 (409)
T ss_dssp TSHHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHH
Confidence 68999999999664
No 3
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=5.4e-48 Score=383.32 Aligned_cols=307 Identities=16% Similarity=0.154 Sum_probs=223.1
Q ss_pred ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058 21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ 99 (378)
Q Consensus 21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~ 99 (378)
...++|||+++|++|+++||+ +.|++||+++||+ +|++++++++|++|+|+|+.+|+++|+.
T Consensus 21 lp~~~Y~d~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~ 83 (412)
T 3vca_A 21 LEQPFYTSPEVYALDLQHIFY-----------------KQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFH 83 (412)
T ss_dssp CCHHHHHCHHHHHHHHHHTTT-----------------TSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred CCHHHcCCHHHHHHHHHHHHh-----------------ccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEec
Confidence 445699999999999999984 5567999999998 5999999999999999999999999999
Q ss_pred cCCCCCCCCCC-CccccCCeeecCCCCeEEcCCCceeecCCcc----ccccccccCCceEEcCeEEEcCCCCCCCCCCCC
Q 017058 100 NTCAHRACPLH-LGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC 174 (378)
Q Consensus 100 n~CpHrg~~L~-~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~----~~~~~l~~~~v~~~~G~I~v~~~~~~~~~~l~~ 174 (378)
|+|||||++|+ .|.++++.|+||||||+||++|+|+.+|... ..+.+|++|||++++|+|||+++++++ ++++
T Consensus 84 n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--~l~~ 161 (412)
T 3vca_A 84 NSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPP--DFQT 161 (412)
T ss_dssp SSCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CCHH
T ss_pred ccCCCCCCEeecccccCCCEEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEEECCEEEEEecCCCC--CHHH
Confidence 99999999998 7899999999999999999999999999753 235789999999999999999987654 3444
Q ss_pred CCC----------CCCceEeeEEEEEEecChhhhhhcccccCCCCCcCcccccCCCCC----------------------
Q 017058 175 LLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV---------------------- 222 (378)
Q Consensus 175 ~~~----------~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~---------------------- 222 (378)
+++ ...+.+.....++++||||+++||++|+||++++|+++++.-...
T Consensus 162 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (412)
T 3vca_A 162 FAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDR 241 (412)
T ss_dssp HHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHHH
T ss_pred HhhhhHHhhccccCCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhhhh
Confidence 321 123444455678899999999999999999999999876532110
Q ss_pred ------ccee------ee---ec---CC------CCCCce---ecC---C--CCcceecCCeeEEEeeeecCCCCcCCCc
Q 017058 223 ------PSLV------KF---LT---PA------SGLQGY---WDP---Y--PIDMEFRPPCMVLSTIGISKPGKLEGQN 270 (378)
Q Consensus 223 ------~~~~------~~---~~---~~------~~~~~~---~~~---~--~~~~~~~~P~~~~~~~~~~~~g~~~~~~ 270 (378)
+... .+ .. +. .+..+. ... . .....+.+||+.+...
T Consensus 242 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~------------ 309 (412)
T 3vca_A 242 CEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL------------ 309 (412)
T ss_dssp HHHTTCCCSCEECTTSSEEEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC------------
T ss_pred hhccCCcccccccccCceeeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC------------
Confidence 0000 00 00 00 000000 000 0 0112355677665442
Q ss_pred cccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHhHHHhhhHHHHHHHHhhccCCCCc-CCccc
Q 017058 271 TRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANV-WNLPV 349 (378)
Q Consensus 271 ~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ED~~ile~qq~~l~~g~~~-~~l~~ 349 (378)
.+.+.++.+.|+++++|++.+.++.........-..+ +.+..+.+.|+.||+.|||+.|+++.++... ..++.
T Consensus 310 -----pd~~~~~~~~P~~~~~t~v~~~~~~~~d~~~~~d~~~-~~~~~~~~~~~~ED~~l~e~~Q~G~~S~~y~~G~~sp 383 (412)
T 3vca_A 310 -----PDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDL-KRLTEVWIATNDEDREIVETNQQGILSPAYVPGPYSP 383 (412)
T ss_dssp -----SSCEEEEEEEEEETTEEEEEEEEEEETTCCBTTTBCH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBCCT
T ss_pred -----CCEEEEEEEEECCCCeEEEEEEEEEccccccCccHHH-HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCC
Confidence 1344567789999999999988775322110000012 3344567889999999999999999986542 22333
Q ss_pred CCCHHHHHHHHHHHH
Q 017058 350 GYDKLGVRYRLWRDA 364 (378)
Q Consensus 350 ~aD~~~v~~Rr~l~~ 364 (378)
..+.+...|.+|+.+
T Consensus 384 ~~E~~v~~F~~w~~~ 398 (412)
T 3vca_A 384 GQESGVMQFVDWYAA 398 (412)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHH
Confidence 358999999999664
No 4
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=6e-46 Score=373.65 Aligned_cols=310 Identities=17% Similarity=0.268 Sum_probs=215.6
Q ss_pred CCCChhhHH--HHhccCCCCcccccCCCCCccccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCC
Q 017058 25 PSTSKQSLD--IVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTC 102 (378)
Q Consensus 25 ~~~s~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~C 102 (378)
..+|+++|+ +|++.|| ++.|++||+++||++|++++++++|++|+|+| .+|+++|+.|+|
T Consensus 23 ~~~~~~~~~~~~e~~~if-----------------~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~C 84 (446)
T 1z01_A 23 NAKTQSQYQPYKDAAWGF-----------------INHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQC 84 (446)
T ss_dssp CHHHHGGGHHHHHCTTCB-----------------CSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSC
T ss_pred cccCHHHhhhhhhhhhhh-----------------hhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcC
Confidence 339999999 9999986 56778999999999899999999999999999 699999999999
Q ss_pred CCCCCCCCCcc--ccCCeeecCCCCeEEcC-CCceeecCCccc----cccccccCCceEEcCeEEEcCCCCC----CCCC
Q 017058 103 AHRACPLHLGS--VNEGRIQCPYHGWEYST-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP----PTAT 171 (378)
Q Consensus 103 pHrg~~L~~g~--~~~~~l~CpyHgw~f~~-~G~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~----~~~~ 171 (378)
||||++|+.|. ++++.|+||||||+||+ +|+|+.+|+.+. ...+|++|||++++|+|||++++++ .+++
T Consensus 85 pHrga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~ 164 (446)
T 1z01_A 85 LHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPP 164 (446)
T ss_dssp TTTCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCC
T ss_pred CCCcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEEEECCEEEEEeCCccccccCCCC
Confidence 99999999997 46789999999999997 999999976431 2578999999999999999997642 1111
Q ss_pred CCCCCC----------------------CCCceEeeEEEEEEecChhhhhhcccccCCCCCcCcccccCC---CCCcce-
Q 017058 172 IPCLLP----------------------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG---WSVPSL- 225 (378)
Q Consensus 172 l~~~~~----------------------~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~---~~~~~~- 225 (378)
+++.++ ..++.+. ...++++||||+++||++|+||+ ++|+++++.. ...+..
T Consensus 165 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~ 242 (446)
T 1z01_A 165 LAHDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVH-GMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGL 242 (446)
T ss_dssp GGGGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEE-EEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEE
T ss_pred hhHhccchhhhhhhccccccccccccccCCCeEEE-eEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccc
Confidence 211111 1344443 34568999999999999999999 9999876521 111100
Q ss_pred -------eeeecCCCCCCce------------ec--------C----CCCcceecCCeeEEEeeeecCCCCcCCCccccc
Q 017058 226 -------VKFLTPASGLQGY------------WD--------P----YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQC 274 (378)
Q Consensus 226 -------~~~~~~~~~~~~~------------~~--------~----~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~ 274 (378)
...+....+..+. +. . ....+.+.+|++++... .|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~---~p~---------- 309 (446)
T 1z01_A 243 LPTSDDCIAVVEDDDGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVEN---WPE---------- 309 (446)
T ss_dssp EECSTTSEEEECCSSSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEET---CSS----------
T ss_pred cccCCCceeEEEecCCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEec---cCC----------
Confidence 0011100000010 00 0 00122344666553321 110
Q ss_pred cceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhHHH----HHHHH-HhHHHhhhHHHHHHHHhhccCCCC-cCCcc
Q 017058 275 ATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQY----LWRHF-AEQVLNEDLRLVLGQQERMNNGAN-VWNLP 348 (378)
Q Consensus 275 ~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~V~~ED~~ile~qq~~l~~g~~-~~~l~ 348 (378)
..+.++..++|+++++|++++.+++++... .....+.. .+... ...|..||+.++|+||+++..+.. ..+++
T Consensus 310 -~~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~~~~~~~~l 387 (446)
T 1z01_A 310 -EHVVQYEWYVPITDDTHEYWEILVRVCPTD-EDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGTGWDDEQL 387 (446)
T ss_dssp -TTCEEEEEEEESSSSEEEEEEEEEEECCSH-HHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSHHHHHCCC
T ss_pred -CCeEEEEEEEECCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccccccccccC
Confidence 123456788999999999988777654311 11110001 01111 234779999999999999877543 34688
Q ss_pred cCCCHHHHHHHHHHHHHHcCC
Q 017058 349 VGYDKLGVRYRLWRDALEKGA 369 (378)
Q Consensus 349 ~~aD~~~v~~Rr~l~~l~~g~ 369 (378)
+.+|+++++||||++++..+.
T Consensus 388 ~~~D~~i~~~Rr~l~~~~~~~ 408 (446)
T 1z01_A 388 VATDISPITWRKLASRWNRGI 408 (446)
T ss_dssp CGGGHHHHHHHHHHHHHCSCB
T ss_pred chhhHHHHHHHHHHHHHHhhc
Confidence 899999999999999886554
No 5
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.2e-46 Score=366.49 Aligned_cols=300 Identities=16% Similarity=0.281 Sum_probs=211.0
Q ss_pred cccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCc
Q 017058 54 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 133 (378)
Q Consensus 54 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~ 133 (378)
+..|.+.|++||+++||++|++++++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||++|+
T Consensus 19 ~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~ 98 (386)
T 2zyl_A 19 PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGR 98 (386)
T ss_dssp CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSB
T ss_pred chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCccc--cccccccCCceEEcCeEEEcCCCCC-CC---CCCCCCCC--CCCceEeeEEEEEEe-cChhhhhhcccc
Q 017058 134 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEP-PT---ATIPCLLP--PSGFEIHAEIVMELP-IEHGLLLDNLLD 204 (378)
Q Consensus 134 ~~~~P~~~~--~~~~l~~~~v~~~~G~I~v~~~~~~-~~---~~l~~~~~--~~~~~~~~~~~~~~~-~nwk~~~EN~~D 204 (378)
|+.+|..+. ...+|++|||++++|+|||+++++. ++ ..+|.+.. ..++.......++++ ||||+++||++|
T Consensus 99 ~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D 178 (386)
T 2zyl_A 99 CKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTD 178 (386)
T ss_dssp EEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESSCGGGGGGGGGC
T ss_pred ccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCcCHHhHhhhccc
Confidence 999998542 2468999999999999999997642 21 12343321 234443344567889 999999999999
Q ss_pred cCCCCCcCcccccCC---CCCcceeeee--cCCCCCC--c-eecC--CCCcceecCCeeEEEeeeecCCCCcCCCccccc
Q 017058 205 LAHAPFTHTSTFAKG---WSVPSLVKFL--TPASGLQ--G-YWDP--YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQC 274 (378)
Q Consensus 205 ~~H~~~vH~~~~~~~---~~~~~~~~~~--~~~~~~~--~-~~~~--~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~ 274 (378)
+||++++|+++.... .......... ....... + .+.. ......|..|+.+++.+....++.
T Consensus 179 ~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~g~--------- 249 (386)
T 2zyl_A 179 MAHFFYIHFGLPTYFKNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRYGNY--------- 249 (386)
T ss_dssp STHHHHTTCEEEEEEEEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEEETTE---------
T ss_pred ccchhhhCcCccccccccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeeccCCc---------
Confidence 999999999753210 0000000110 0000000 0 0000 001235667887665544332221
Q ss_pred cceeeEEEEEecCCCCeEEEEEEeeccchhhcc--CchhHHHHHHHHHhHHHhhhHHHHHHHHhhccCCCCcCCcccCCC
Q 017058 275 ATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLK--HVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYD 352 (378)
Q Consensus 275 ~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~V~~ED~~ile~qq~~l~~g~~~~~l~~~aD 352 (378)
......++.++|+++++|++++.+++++..... ....+...+..+..+++.||+.|+|+||+... .++...|
T Consensus 250 ~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~ED~~I~e~q~~~~~------p~~~~~D 323 (386)
T 2zyl_A 250 KSESILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRVFTEGVSKGFLQDVEIWKHKTRIDN------PLLVEED 323 (386)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS------CCCCGGG
T ss_pred ceeEEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhcccccC------CccCccc
Confidence 112344566799999999999988765432111 11222233445678899999999998765422 2567889
Q ss_pred HHHHHHHHHHHHHHcC
Q 017058 353 KLGVRYRLWRDALEKG 368 (378)
Q Consensus 353 ~~~v~~Rr~l~~l~~g 368 (378)
+++++||||++++-..
T Consensus 324 ~~~~~fRrw~~~~~~~ 339 (386)
T 2zyl_A 324 GAVYQLRRWYEQFYVD 339 (386)
T ss_dssp CSHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999999986443
No 6
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=1.1e-45 Score=366.11 Aligned_cols=296 Identities=20% Similarity=0.337 Sum_probs=204.4
Q ss_pred cccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccc--cCCeeecCCCCeEEcC-CC
Q 017058 56 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYST-DG 132 (378)
Q Consensus 56 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~--~~~~l~CpyHgw~f~~-~G 132 (378)
.|++.|++||+++||++|++++++++|++|+|+|+ +|+++|+.|+|||||++|+.|.+ +++.|+||||||+||+ +|
T Consensus 24 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~~~~G 102 (392)
T 2de6_A 24 GFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDG 102 (392)
T ss_dssp CBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTTC
T ss_pred hhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe-CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEcCCCC
Confidence 45788999999999998999999999999999995 99999999999999999999975 4689999999999997 99
Q ss_pred ceeecCCccc----cccccccCCceEEcCeEEEcCCCCCCCCCCCCCC----CCCCceEeeEEEEEEecChhhhhhcccc
Q 017058 133 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLDNLLD 204 (378)
Q Consensus 133 ~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~nwk~~~EN~~D 204 (378)
+|+.+|..+. ...+|++|||++++|+|||++++++++ ++++.+ ...++... ...++++||||+++||++|
T Consensus 103 ~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~-~l~~~l~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D 180 (392)
T 2de6_A 103 VLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP-PLARDTPPNFLDDDMEIL-GKNQIIKSNWRLAVENGFD 180 (392)
T ss_dssp BEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSCC-CGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHHHHHC
T ss_pred ccccccCCccccccccCCCceEeEEEECCEEEEEeCCCCCC-ChhHhccccccCCCeEEE-EEEEEEecChHhhhHhcch
Confidence 9999986432 357899999999999999999764322 232211 12456553 3567899999999999999
Q ss_pred cCCCCCcCcccccCCCC---Ccc---------eeeeecCCC--CCCceec---C------------------------CC
Q 017058 205 LAHAPFTHTSTFAKGWS---VPS---------LVKFLTPAS--GLQGYWD---P------------------------YP 243 (378)
Q Consensus 205 ~~H~~~vH~~~~~~~~~---~~~---------~~~~~~~~~--~~~~~~~---~------------------------~~ 243 (378)
+||+ ++|+++++.... .+. ......... +..++.. . ..
T Consensus 181 ~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~ 259 (392)
T 2de6_A 181 PSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKIVA 259 (392)
T ss_dssp GGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTCEEECEEEETTEEEEECEECSBCCC
T ss_pred hhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCccccccccccccceeeccccCCcccc
Confidence 9999 999987643110 000 000000000 0001000 0 01
Q ss_pred CcceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCch-hHHH---HHHH-
Q 017058 244 IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP-FMQY---LWRH- 318 (378)
Q Consensus 244 ~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~-~~~~---~~~~- 318 (378)
....+..|+..... ..|+ ..+.++..++|+++++|++++.+++++... .... +... .+..
T Consensus 260 ~~~~~~~P~~~~~~---~~p~-----------~~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 324 (392)
T 2de6_A 260 NDISIWLPGVLKVN---PFPN-----------PDMMQFEWYVPIDENTHYYFQTLGKPCAND-EERKKYEQEFESKWKPM 324 (392)
T ss_dssp CEEEEETTTEEEEE---SCSS-----------TTCEEEEEEEEEETTEEEEEEEEEEECSSH-HHHHHHHHHHHHTHHHH
T ss_pred eeEEEecccceecc---ccCC-----------CCEEEEEEEeecCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHHHHHh
Confidence 11223345443211 0111 123456678999999999988777655321 1111 1111 1111
Q ss_pred HHhHHHhhhHHHHHHHHhhccCCCC-cCCcccCCCHHHHHHHHHHHHHHcCCC
Q 017058 319 FAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAK 370 (378)
Q Consensus 319 ~~~~V~~ED~~ile~qq~~l~~g~~-~~~l~~~aD~~~v~~Rr~l~~l~~g~~ 370 (378)
....|+.||+.|+|+||+.+..+.. ..+++.++|+++++||||++++..+..
T Consensus 325 ~~~~~~~qD~~i~e~qq~~~~~~~~~~~e~~~~~D~~~~~~Rr~l~~~~~~~~ 377 (392)
T 2de6_A 325 ALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQ 377 (392)
T ss_dssp TTTTTTHHHHHHHHHTHHHHHTSTHHHHCCCCGGGHHHHHHHHHHHHHCSCBC
T ss_pred hccCCChhhHHHHHhhhhhhhccccCccceecchhHHHHHHHHHHHHHhhhhc
Confidence 1245788999999999998876543 456888999999999999999876654
No 7
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=3.8e-42 Score=334.58 Aligned_cols=298 Identities=19% Similarity=0.344 Sum_probs=213.4
Q ss_pred cccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcc--ccCCeeecCCCCeEEcC-CC
Q 017058 56 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG 132 (378)
Q Consensus 56 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~-~G 132 (378)
+|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||+ +|
T Consensus 27 if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~dG 105 (389)
T 3gkq_A 27 GFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNG 105 (389)
T ss_dssp CBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEETTTC
T ss_pred hhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEECCCC
Confidence 4578889999999999999999999999999999 69999999999999999999986 56889999999999998 99
Q ss_pred ceeecCCccc----cccccccCCceEEcCeEEEcCCCCCCCCCCCCCC----CCCCceEeeEEEEEEecChhhhhhcccc
Q 017058 133 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLDNLLD 204 (378)
Q Consensus 133 ~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~nwk~~~EN~~D 204 (378)
+|+.+|..+. ...+|++|||++++|+|||+++++++ +++++.+ ...++.+.. ..++++||||+++||++|
T Consensus 106 ~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~l~~~~~~~~~~~~~-~~~~i~~NWK~~~EN~lD 183 (389)
T 3gkq_A 106 KLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP-HDLAEDVPPGFLDADLAVHG-QHRVVDANWRMGVENGFD 183 (389)
T ss_dssp BEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHHHHTC
T ss_pred CeecccCCcccccccccCCcEEEEEEECCeEEEecCCCCC-CCchhhcchhccCCceEEEe-EEEEEecCchhhHHhcch
Confidence 9999987542 35789999999999999999975432 2233322 124555443 467899999999999999
Q ss_pred cCCCCCcCcccccCC---CCCcc---------eeeeecCCCCCCceecCCC---------------------------Cc
Q 017058 205 LAHAPFTHTSTFAKG---WSVPS---------LVKFLTPASGLQGYWDPYP---------------------------ID 245 (378)
Q Consensus 205 ~~H~~~vH~~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------------~~ 245 (378)
+||+ ++|+++++.. ...+. ......+...++|.++.+. ..
T Consensus 184 ~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (389)
T 3gkq_A 184 AGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQPAIQGHMGSKMVAIS 262 (389)
T ss_dssp SGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEEEEECBCCSBCCCCE
T ss_pred hchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcccccCCCCCccccee
Confidence 9999 9999987631 11110 1112222233444333210 11
Q ss_pred ceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhH---HHHHHH-HHh
Q 017058 246 MEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFM---QYLWRH-FAE 321 (378)
Q Consensus 246 ~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~ 321 (378)
..+..|++.... .+.. .+++++...+|+++++++++..+.+......+...+- +..|.. ..+
T Consensus 263 ~s~~lP~v~~v~-~~~~-------------~~~~~~~~~vpi~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (389)
T 3gkq_A 263 ISVWLPGVLKVD-PFPD-------------PTLTQFEWYVPIDEGHHLYLQMLGRRVGSEEEARSFEAEFREKWVELALN 328 (389)
T ss_dssp EEEETTTEEEEE-SCSS-------------TTCEEEEEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHTHHHHTTT
T ss_pred EEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEEcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 233344443222 1111 2567777789999999999987765443221111111 112222 246
Q ss_pred HHHhhhHHHHHHHHhhccCCC-CcCCcccCCCHHHHHHHHHHHHHHcCCCC
Q 017058 322 QVLNEDLRLVLGQQERMNNGA-NVWNLPVGYDKLGVRYRLWRDALEKGAKQ 371 (378)
Q Consensus 322 ~V~~ED~~ile~qq~~l~~g~-~~~~l~~~aD~~~v~~Rr~l~~l~~g~~~ 371 (378)
.+.++|...-|+.|+-+..+. ...|.....|..+|++||...+..+|...
T Consensus 329 ~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~wr~~~~~~~~~~~~ 379 (389)
T 3gkq_A 329 GFNDDDILARRSMEPFYADDRGWREEVLFESDRAIIEWRRLASQYNRGIQT 379 (389)
T ss_dssp TTTHHHHHHHHHHHHHHHTSHHHHHCCCCGGGHHHHHHHHHHHHHCSCBCC
T ss_pred cccchhHHHHHHHHHhhccCCCCChhhccCcchhHHHHHHHHHHhccccCC
Confidence 788999999999998887642 23368889999999999999999888654
No 8
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=9.6e-42 Score=332.66 Aligned_cols=299 Identities=20% Similarity=0.323 Sum_probs=211.5
Q ss_pred cccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCcc--ccCCeeecCCCCeEEcC-CC
Q 017058 56 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG 132 (378)
Q Consensus 56 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~--~~~~~l~CpyHgw~f~~-~G 132 (378)
.|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||+ +|
T Consensus 30 if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~dG 108 (394)
T 3gcf_A 30 GFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDDG 108 (394)
T ss_dssp CEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEETTTC
T ss_pred hhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEECCCC
Confidence 4678899999999999999999999999999999 69999999999999999999986 46889999999999998 89
Q ss_pred ceeecCCccc----cccccccCCceEEcCeEEEcCCCCCCCCCCCCCCC----CCCceEeeEEEEEEecChhhhhhcccc
Q 017058 133 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLDNLLD 204 (378)
Q Consensus 133 ~~~~~P~~~~----~~~~l~~~~v~~~~G~I~v~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~nwk~~~EN~~D 204 (378)
+|+.+|..+. ...+|++|||++++|+|||+++++++ +++++.++ ..++.+. ....+++||||+++||++|
T Consensus 109 ~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~L~~~~~d~~~~~~-~~~~~i~~NWK~~~EN~lD 186 (394)
T 3gcf_A 109 RLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HALSEDLPPGFLDEDTHLL-GIRRTVQSNWRLGVENGFD 186 (394)
T ss_dssp BEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHHHHSC
T ss_pred ceeccCCCcccccccccCceEEEEEEECCcEEEecCCCCC-CCchhhcchhhcCCceEEE-eEEEEEecCchhhHhhccc
Confidence 9999987542 35789999999999999999976432 23333221 2445543 3467899999999999999
Q ss_pred cCCCCCcCcccccCC---CCCccee--------eeecCCCCCCceecCC-----------------------------CC
Q 017058 205 LAHAPFTHTSTFAKG---WSVPSLV--------KFLTPASGLQGYWDPY-----------------------------PI 244 (378)
Q Consensus 205 ~~H~~~vH~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~-----------------------------~~ 244 (378)
+||+ ++|+++++.. ...+..+ ... +....+|.++.+ ..
T Consensus 187 ~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kg~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~ 264 (394)
T 3gcf_A 187 TTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQVY-DENWPKGVLDRLSENYMPVFEATLDGETVLSAELTGEEKKVAA 264 (394)
T ss_dssp SSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEEE-CSSSSCEEEECHHHHEEEECEEEETTEEEEECCCCSSCBCCCS
T ss_pred cchh-hCchhhhcccccccccCcceeEcCCceEEec-cCCCCcchhhhhhccccccccccccccccccccccCcccccce
Confidence 9999 9999988641 1111110 111 112223322110 01
Q ss_pred cceecCCeeEEEeeeecCCCCcCCCccccccceeeEEEEEecCCCCeEEEEEEeeccchhhccCchhH---HHHHHH-HH
Q 017058 245 DMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFM---QYLWRH-FA 320 (378)
Q Consensus 245 ~~~~~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~~---~~~~~~-~~ 320 (378)
...+..|++.... .+.. .+++++...+|+++++++++..+.+......+...|- +..|.. ..
T Consensus 265 ~~s~~lP~v~~v~-~~p~-------------~~~~~~~~~vPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (394)
T 3gcf_A 265 QVSVWLPGVLKVD-PFPD-------------PTLIQYEFYVPISETQHEYFQVLQRKVEGPEDVKTFEVEFEERWRDDAL 330 (394)
T ss_dssp EEEEETTTEEEEE-SCSS-------------TTCEEEEEEEESSSSCEEEEEEEEEECSSHHHHHHHHHHHHHTHHHHTT
T ss_pred eEEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEECCCHHHHHHHHHHHHHHhHHHhh
Confidence 1223344433222 1111 2567777789999999999977765443221111111 112221 24
Q ss_pred hHHHhhhHHHHHHHHhhccCCC-CcCCcccCCCHHHHHHHHHHHHHHcCCCCCC
Q 017058 321 EQVLNEDLRLVLGQQERMNNGA-NVWNLPVGYDKLGVRYRLWRDALEKGAKQLP 373 (378)
Q Consensus 321 ~~V~~ED~~ile~qq~~l~~g~-~~~~l~~~aD~~~v~~Rr~l~~l~~g~~~~p 373 (378)
+.++++|...-|+.|+-+..+. ...|.....|..++++||...+..+|...-|
T Consensus 331 ~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~~r~~~~~~~~~~~~~~ 384 (394)
T 3gcf_A 331 HGFNDDDVWAREAQQEFYGERDGWSKEQLFPPDMCIVKWRTLASERGRGVRAAR 384 (394)
T ss_dssp TTTTHHHHHHHHHHHHHHHHSCHHHHCCCCGGGHHHHHHHHHHHHHCSEECC--
T ss_pred cccchhhHHHHHHHHHhhcccCCCChhhccCcchhHHHHHHHHHHhcccCCCCC
Confidence 6788999999999998877643 2346888999999999999999988876544
No 9
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=1.7e-41 Score=342.20 Aligned_cols=178 Identities=18% Similarity=0.305 Sum_probs=151.5
Q ss_pred ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058 21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ 99 (378)
Q Consensus 21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~ 99 (378)
...++|||+++|++|+++||. +.|++||+++||+ +|++++++++|++|+|+|+.+|+++|+.
T Consensus 15 ~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~ 77 (454)
T 2gbw_A 15 QSRQVFWDEDVYALEIERIFS-----------------RAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAFI 77 (454)
T ss_dssp EEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred cCHHHcCCHHHHHHHHHHHhh-----------------cCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEe
Confidence 556799999999999999984 4567999999998 6999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCceeecCCccc--------cccccccCCceEEcCeEEEcCCCCCCCC
Q 017058 100 NTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPPTA 170 (378)
Q Consensus 100 n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P~~~~--------~~~~l~~~~v~~~~G~I~v~~~~~~~~~ 170 (378)
|+|||||++|+.|.. +++.|+||||||+||++|+|+.+|.... .+.+|++|+|++++|+|||+++++++
T Consensus 78 n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p-- 155 (454)
T 2gbw_A 78 NSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAP-- 155 (454)
T ss_dssp SSCTTTCCCSCCCSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCC--
T ss_pred ccCCCCCCCCcccccCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCC--
Confidence 999999999998765 6789999999999999999999997531 24679999999999999999987654
Q ss_pred CCCCCCC-------------CCCceEe-eEEEEEEecChhhhhhcc-cccCCCCCcCccccc
Q 017058 171 TIPCLLP-------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 217 (378)
Q Consensus 171 ~l~~~~~-------------~~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~~~vH~~~~~ 217 (378)
+++++++ ..++.+. ....++++||||+++||+ +|+||++++|..+++
T Consensus 156 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 156 SLEDYLGEFRYYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp CHHHHHGGGHHHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred CHHHHhhhhHHHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 3444322 1335544 355678999999999999 799999999976654
No 10
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=3.6e-41 Score=339.22 Aligned_cols=179 Identities=20% Similarity=0.295 Sum_probs=152.0
Q ss_pred cc-CCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEE
Q 017058 21 TC-ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 98 (378)
Q Consensus 21 ~~-~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~ 98 (378)
.. .++|||+++|++|+++||. +.|++||+++||+ +|++++++++|++|+|+|+.+|+++||
T Consensus 13 ~~~~~~y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~ 75 (447)
T 2bmo_A 13 TQKLLIHGDKELFQHELKTIFA-----------------RNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAF 75 (447)
T ss_dssp EEEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred CCccceeCCHHHHHHHHHHhhc-----------------cCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEEE
Confidence 45 6799999999999999984 5577999999998 699999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCceeecCCcc--------ccccccccCC-ceEEcCeEEEcCCCCCC
Q 017058 99 QNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 99 ~n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P~~~--------~~~~~l~~~~-v~~~~G~I~v~~~~~~~ 168 (378)
.|+|||||++|+.|.. +++.|+||||||+||+||+|+.+|..+ ..+.+|++|| |++++|+|||+++++++
T Consensus 76 ~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~ 155 (447)
T 2bmo_A 76 LNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAP 155 (447)
T ss_dssp ESBCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTCC
T ss_pred eccCcCCCCCccccccCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCCC
Confidence 9999999999999865 578999999999999999999999743 2346899999 99999999999987654
Q ss_pred CCCCCCCCC------------CCCceEe-eEEEEEEecChhhhhhcc-cccCCCCCcCcccccC
Q 017058 169 TATIPCLLP------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK 218 (378)
Q Consensus 169 ~~~l~~~~~------------~~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~~~vH~~~~~~ 218 (378)
+++++++ ..++.+. ....++++||||+++||+ +|+||++++|..+++.
T Consensus 156 --~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~ 217 (447)
T 2bmo_A 156 --PLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA 217 (447)
T ss_dssp --CHHHHHTTHHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred --CHHHHhccHHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhhc
Confidence 3444322 2245544 255678999999999999 7999999999776653
No 11
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=1.2e-40 Score=337.24 Aligned_cols=178 Identities=20% Similarity=0.349 Sum_probs=149.6
Q ss_pred ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCCC-CCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058 21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQ 99 (378)
Q Consensus 21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~-g~~~~~~~~g~~vvv~R~~~G~~~a~~ 99 (378)
...++|||+++|++|+++||. +.|++||+++||++ |++++++++|++|+|+|+.+|+++||.
T Consensus 23 lp~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a~~ 85 (470)
T 2b1x_A 23 VPAAIINDPEVHDVERERIFG-----------------HAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHL 85 (470)
T ss_dssp EEGGGSSCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred CCHHHcCCHHHHHHHHHHHhh-----------------cCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEe
Confidence 567799999999999999974 55679999999985 889999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccc-CCeeecCCCCeEEcCCCceeecCCccc--------cccccccCC-ceEEcCeEEEcCCCCCCC
Q 017058 100 NTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGDEPPT 169 (378)
Q Consensus 100 n~CpHrg~~L~~g~~~-~~~l~CpyHgw~f~~~G~~~~~P~~~~--------~~~~l~~~~-v~~~~G~I~v~~~~~~~~ 169 (378)
|+|||||++|+.|.+. ++.|+||||||+||+||+|+.+|..+. .+.+|.++| |++++|+|||+++++++
T Consensus 86 n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~- 164 (470)
T 2b1x_A 86 NACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHAD- 164 (470)
T ss_dssp SSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTCC-
T ss_pred cccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCCC-
Confidence 9999999999998755 479999999999999999999998531 246788885 56679999999987654
Q ss_pred CCCCCCCC-------------CCCceEee-EEEEEEecChhhhhhcc-cccCCCCCcCccccc
Q 017058 170 ATIPCLLP-------------PSGFEIHA-EIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 217 (378)
Q Consensus 170 ~~l~~~~~-------------~~~~~~~~-~~~~~~~~nwk~~~EN~-~D~~H~~~vH~~~~~ 217 (378)
+++++++ ..++++.. ...++++||||+++||+ +|+||++++|++++.
T Consensus 165 -~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 165 -SLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp -CHHHHHGGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred -CHHHHhcchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 3443322 23455443 45678999999999999 999999999998764
No 12
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=2.7e-40 Score=331.67 Aligned_cols=179 Identities=18% Similarity=0.271 Sum_probs=153.5
Q ss_pred ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058 21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ 99 (378)
Q Consensus 21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~ 99 (378)
.+.+.|||+++|++|+++||+ +.|++||+++||+ +|++++++++|++|+|+|+.||+++||.
T Consensus 35 ~~~~~Ytd~~~~~~E~~~if~-----------------~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A~~ 97 (457)
T 3gzx_A 35 LDARIYADQDLYQLELERVFG-----------------RSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFL 97 (457)
T ss_dssp EEGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred CCHHHcCCHHHHHHHHHHHHh-----------------cCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEEEe
Confidence 556799999999999999984 5567999999998 5999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcc-ccCCeeecCCCCeEEcCCCceeecCCcc--------------ccccccccCCceEEcCeEEEcCC
Q 017058 100 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ--------------LRNVKIKSLPCFEQEGMIWIWPG 164 (378)
Q Consensus 100 n~CpHrg~~L~~g~-~~~~~l~CpyHgw~f~~~G~~~~~P~~~--------------~~~~~l~~~~v~~~~G~I~v~~~ 164 (378)
|+|||||++|+.|. ++++.|+||||||+||++|+|+.+|..+ ....+|++|+|++++|+||||++
T Consensus 98 n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~ 177 (457)
T 3gzx_A 98 NQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWD 177 (457)
T ss_dssp SCCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESC
T ss_pred CcCCCCCcCccCCCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecC
Confidence 99999999999985 6789999999999999999999999853 12467899999999999999998
Q ss_pred CCCCCCCCCCCCCC-------------CCceEe-eEEEEEEecChhhhhhcc-cccCCCC-CcCcccccC
Q 017058 165 DEPPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAP-FTHTSTFAK 218 (378)
Q Consensus 165 ~~~~~~~l~~~~~~-------------~~~~~~-~~~~~~~~~nwk~~~EN~-~D~~H~~-~vH~~~~~~ 218 (378)
++++ ++++++++ .++++. ....++++||||+++||+ +|+||++ ++|.++++.
T Consensus 178 ~~ap--~l~e~lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~~ 245 (457)
T 3gzx_A 178 PEAP--DLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLA 245 (457)
T ss_dssp TTSC--CHHHHTTTCHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHHH
T ss_pred CCCC--ChHHHHhhhHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhhc
Confidence 8754 34454431 234544 246788999999999999 8999999 999987653
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=2.2e-39 Score=327.08 Aligned_cols=177 Identities=19% Similarity=0.293 Sum_probs=149.0
Q ss_pred ccCCCCCChhhHHHHhccCCCCcccccCCCCCccccccCceEEEEecCCCC-CCCeEEEEECCeeEEEEEeCCCcEEEEc
Q 017058 21 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ 99 (378)
Q Consensus 21 ~~~~~~~s~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~~~a~~ 99 (378)
...+.|||+++|++|+++||. +.|++||+++||+ +|+++++++++++|+|+|+.+|+++||.
T Consensus 33 ~p~~~y~d~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a~~ 95 (460)
T 1uli_A 33 LDPRIYTDEALYEQELERIFG-----------------RSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFL 95 (460)
T ss_dssp ECGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred CCHHHcCCHHHHHHHHHHhhh-----------------cCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEe
Confidence 556699999999999999974 5567999999998 5889999999999999999999999999
Q ss_pred cCCCCCCCCCCCccc-cCCeeecCCCCeEEcCCCceeecCCcc-------ccccccccCCceEEcCeEEEcCCCCCCCCC
Q 017058 100 NTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPTAT 171 (378)
Q Consensus 100 n~CpHrg~~L~~g~~-~~~~l~CpyHgw~f~~~G~~~~~P~~~-------~~~~~l~~~~v~~~~G~I~v~~~~~~~~~~ 171 (378)
|+|||||++|+.|.. +++.|+||||||+||+||+|+.+|... ..+.+|++|+|++++|+|||+++++++ +
T Consensus 96 n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--~ 173 (460)
T 1uli_A 96 NQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP--D 173 (460)
T ss_dssp SCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSC--C
T ss_pred eeCCCCCCCCccccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCC--C
Confidence 999999999998765 568999999999999999999999753 124679999999999999999987654 3
Q ss_pred CCCCCCC-------------CCceE-eeEEEEEEecChhhhhhcc-cccCCC-CCcCcccc
Q 017058 172 IPCLLPP-------------SGFEI-HAEIVMELPIEHGLLLDNL-LDLAHA-PFTHTSTF 216 (378)
Q Consensus 172 l~~~~~~-------------~~~~~-~~~~~~~~~~nwk~~~EN~-~D~~H~-~~vH~~~~ 216 (378)
+++++++ .++.+ .....++++||||+++||+ +|+||+ .++|..++
T Consensus 174 l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 174 LDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp HHHHHTTHHHHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred HHHHhcchHHHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 3333221 23443 2345678999999999999 799999 69998665
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.95 E-value=2e-28 Score=197.42 Aligned_cols=100 Identities=19% Similarity=0.325 Sum_probs=94.6
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecC
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 138 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P 138 (378)
.|+.||.++||++|+++.+++.|++++|+| .+|+++|+.|+|||||++|+.|.+.++.|+||||||+||+ +|+|+.+|
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~P 81 (103)
T 2qpz_A 3 KWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAP 81 (103)
T ss_dssp CEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEETT
T ss_pred ccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 599999999999999999999999999999 7999999999999999999999988999999999999997 99999999
Q ss_pred CccccccccccCCceEEcCeEEEcCC
Q 017058 139 STQLRNVKIKSLPCFEQEGMIWIWPG 164 (378)
Q Consensus 139 ~~~~~~~~l~~~~v~~~~G~I~v~~~ 164 (378)
.. .+|++|||++++|+|||+++
T Consensus 82 ~~----~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 82 VT----QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp CC----SCCCEECEEEETTEEEEECC
T ss_pred CC----CCCCEEeEEEECCEEEEEcC
Confidence 74 36999999999999999874
No 15
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.95 E-value=5.2e-28 Score=198.04 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=95.7
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCc-cccCCeeecCCCCeEEcC-CCceeec
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYST-DGKCEKM 137 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g-~~~~~~l~CpyHgw~f~~-~G~~~~~ 137 (378)
.|+.||.++||++|+++.+++.|++|+|+|. +|+++|+.|+|||||++|+.| .++++.|+||||||+||+ ||+|+.+
T Consensus 5 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~ 83 (112)
T 1fqt_A 5 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSP 83 (112)
T ss_dssp CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEES
T ss_pred ceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCC
Confidence 5999999999999999999999999999998 999999999999999999999 888899999999999998 8999999
Q ss_pred CCccccccccccCCceEEcCeEEEcCCCC
Q 017058 138 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 166 (378)
Q Consensus 138 P~~~~~~~~l~~~~v~~~~G~I~v~~~~~ 166 (378)
|.. .+|++|||++++|+|||+++++
T Consensus 84 P~~----~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 84 PPC----EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp SCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred CCC----CCccEEEEEEECCEEEEEeccc
Confidence 974 3699999999999999998654
No 16
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.95 E-value=1.4e-28 Score=200.03 Aligned_cols=102 Identities=24% Similarity=0.380 Sum_probs=94.8
Q ss_pred ceEEEEecCCCCCCCeEEEEECCee-EEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeec
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEP-WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 137 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~-vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~ 137 (378)
.|+.||.++||++|+.+.+++.|++ ++|+|. +|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+.+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~ 81 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF 81 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence 5999999999999999999999999 999998 999999999999999999999988999999999999996 9999999
Q ss_pred CCccccccccccCCceEEcCeEEEcCCCC
Q 017058 138 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 166 (378)
Q Consensus 138 P~~~~~~~~l~~~~v~~~~G~I~v~~~~~ 166 (378)
|.. .+|++|+|++++|+|||+++++
T Consensus 82 P~~----~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 82 PCQ----IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC--
T ss_pred CCC----CCccEEeEEEECCEEEEeCCCC
Confidence 974 3699999999999999998764
No 17
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.95 E-value=4.2e-28 Score=198.26 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=96.1
Q ss_pred ceEEEEecCCCCCCCeEEEEE-CCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeec
Q 017058 60 FWFPVAFSTDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 137 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~-~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~ 137 (378)
.|+.||.++||++|+.+.+++ .|++++|+|..+|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~- 79 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN- 79 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence 499999999999999999999 99999999988999999999999999999999988999999999999998 599998
Q ss_pred CCccccccccccCCceEEcCeEEEcCCCCCC
Q 017058 138 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 138 P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~ 168 (378)
|.. .+|++|+|++++|+|||+++++++
T Consensus 80 p~~----~~L~~~~v~~~~g~v~v~~~~~~~ 106 (111)
T 1vm9_A 80 PDD----AALAEYPVEVKGDDIYVSTKGILP 106 (111)
T ss_dssp SSS----CBCCEECEEEETTEEEECCTTCCC
T ss_pred CCc----CCcCEEEEEEECCEEEEeccCcCC
Confidence 653 479999999999999999977643
No 18
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.95 E-value=2e-28 Score=201.41 Aligned_cols=104 Identities=21% Similarity=0.463 Sum_probs=96.2
Q ss_pred cCceEEEEecCCCCCCCeEEEEECCe-eEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCcee
Q 017058 58 KNFWFPVAFSTDLKDDTMVPFDCFEE-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCE 135 (378)
Q Consensus 58 ~~~W~~v~~~~el~~g~~~~~~~~g~-~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~ 135 (378)
.+.|+.||.++||++|+++.+++.|+ +|+|+|. +|+++|+.|+|||||++|+.|.+.++.|+||||||+||+ +|+|+
T Consensus 2 ~~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~ 80 (115)
T 2de6_D 2 NQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPA 80 (115)
T ss_dssp --CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEE
T ss_pred CcceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEe
Confidence 36799999999999999999999999 9999998 999999999999999999999988999999999999996 99999
Q ss_pred ecCCccccccccccCCceEEcCeEEEcCCCC
Q 017058 136 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 166 (378)
Q Consensus 136 ~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~ 166 (378)
.+|.. .+|++|||++++|+|||++++.
T Consensus 81 ~~P~~----~~L~~~~v~~~~g~V~v~~~~~ 107 (115)
T 2de6_D 81 SSPCT----VPLGVFEVEVKEGEVYVAGEKK 107 (115)
T ss_dssp ETTCC----SCCCEEEEEESSSEEEEEEEEC
T ss_pred CCCCc----CCCCEEEEEEECCEEEEecCCc
Confidence 99974 3699999999999999998654
No 19
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.95 E-value=2.9e-28 Score=197.58 Aligned_cols=102 Identities=23% Similarity=0.342 Sum_probs=95.4
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcC-CCceeecC
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 138 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~-~G~~~~~P 138 (378)
.|+.||.++||++|+.+.+++.|++|+|+| .+|+++|+.|+|||||++|+.|.++++.|+||||||+||+ +|+|+.+|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P 79 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP 79 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 599999999999999999999999999999 5999999999999999999999999999999999999995 99999999
Q ss_pred CccccccccccCCceEEcCeEEEcCCCC
Q 017058 139 STQLRNVKIKSLPCFEQEGMIWIWPGDE 166 (378)
Q Consensus 139 ~~~~~~~~l~~~~v~~~~G~I~v~~~~~ 166 (378)
+. .+|++||+++++|.|||++++.
T Consensus 80 ~~----~~L~~~~v~~~~g~v~v~~~~~ 103 (106)
T 3dqy_A 80 AC----KPIKVFPIKVEGDEVHVDLDNG 103 (106)
T ss_dssp CC----SCCCEECEEEETTEEEECGGGC
T ss_pred CC----CCccEEEEEEECCEEEEEcccc
Confidence 74 3699999999999999998653
No 20
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.95 E-value=2.5e-27 Score=196.56 Aligned_cols=104 Identities=19% Similarity=0.312 Sum_probs=95.2
Q ss_pred CceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCc--cccCCeeecCCCCeEEcC-CCcee
Q 017058 59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYST-DGKCE 135 (378)
Q Consensus 59 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g--~~~~~~l~CpyHgw~f~~-~G~~~ 135 (378)
..|+.||.++||++|+.+.+++.|++|+|+|. +|+++|+.|+|||||++|+.| .++++.|+||||||+||+ +|+|+
T Consensus 9 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~ 87 (121)
T 3gce_A 9 STPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPT 87 (121)
T ss_dssp CCCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEE
T ss_pred cCcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEe
Confidence 35999999999999999999999999999996 999999999999999999999 888999999999999995 99999
Q ss_pred ecCCccccccccccCCceEEcCeEEEcCCCCC
Q 017058 136 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEP 167 (378)
Q Consensus 136 ~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~ 167 (378)
.+|+. .+|++|||++++|.|||+++.+.
T Consensus 88 ~~P~~----~~L~~~~v~v~~g~V~v~~~~~~ 115 (121)
T 3gce_A 88 ALPCV----LPVRAYDVVVDGTEILVAPKEAD 115 (121)
T ss_dssp ETTCC----SCCCBCCEEEETTEEEECCC---
T ss_pred CCCCc----CCcceEEEEEECCEEEEEECccc
Confidence 99985 36999999999999999987654
No 21
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.94 E-value=1.3e-27 Score=197.76 Aligned_cols=103 Identities=14% Similarity=0.016 Sum_probs=95.3
Q ss_pred CceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCC-CCCCccccCC----eeecCCCCeEEcC-CC
Q 017058 59 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC-PLHLGSVNEG----RIQCPYHGWEYST-DG 132 (378)
Q Consensus 59 ~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~-~L~~g~~~~~----~l~CpyHgw~f~~-~G 132 (378)
..|+.||.++||++|+++.+++.|++|+|+|..+|+++|+.|+|||||+ +|+.|.+.++ .|+||||||+||+ ||
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 83 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG 83 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence 5699999999999999999999999999999889999999999999999 8999987543 8999999999998 99
Q ss_pred ceeecCCccccccccccCCceEEcCeEEEcCCCC
Q 017058 133 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 166 (378)
Q Consensus 133 ~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~ 166 (378)
+|+.+|. .+|++|||++++|.|||++++.
T Consensus 84 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 84 QCLEDEA-----HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp BBSSCTT-----CBCCEECEEESSSEEEEECCCC
T ss_pred cCCCCCC-----ceeeEEEEEEECCEEEEEeCCc
Confidence 9999997 3699999999999999998654
No 22
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.94 E-value=2.5e-27 Score=194.23 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=92.4
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCC-cEEEEccCCCCCCC-CCCCcccc---CC-eeecCCCCeEEcC-CC
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---EG-RIQCPYHGWEYST-DG 132 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G-~~~a~~n~CpHrg~-~L~~g~~~---~~-~l~CpyHgw~f~~-~G 132 (378)
.|+.||.++||++|+++.+++.|++++|+|..+| +++|+.|+|||||+ +|+.|.+. +. .|+||||||+||+ +|
T Consensus 6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG 85 (113)
T 2jo6_A 6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG 85 (113)
T ss_dssp CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence 5999999999999999999999999999998899 69999999999999 79999875 23 8999999999998 99
Q ss_pred ceeecCCccccccccccCCceEEcCeEEEcCC
Q 017058 133 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 164 (378)
Q Consensus 133 ~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~ 164 (378)
+|+.+|. .+|++|||++++|+|||+++
T Consensus 86 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 86 LCMEDEQ-----FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp EETTTTT-----TCCCEEEEEEETTEEEEECC
T ss_pred cCCCCCc-----ccccEEeEEEECCEEEEEcC
Confidence 9999997 36999999999999999874
No 23
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.94 E-value=4.9e-27 Score=197.24 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=94.7
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCC-cEEEEccCCCCCCC-CCCCcccc---C-CeeecCCCCeEEcC-CC
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---E-GRIQCPYHGWEYST-DG 132 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G-~~~a~~n~CpHrg~-~L~~g~~~---~-~~l~CpyHgw~f~~-~G 132 (378)
.|+.||.++||++|+.+.+++.|++|+|+|..+| +++|+.|+|||||+ +|+.|.+. + ..|+||||||+||+ ||
T Consensus 3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 82 (130)
T 2jza_A 3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG 82 (130)
T ss_dssp SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence 5999999999999999999999999999998778 99999999999999 59999875 3 38999999999998 99
Q ss_pred ceeecCCccccccccccCCceEEcCeEEEcCCCCCC
Q 017058 133 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 133 ~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~ 168 (378)
+|+.+|. .+|++|||++++|+|||+++++++
T Consensus 83 ~~~~~P~-----~~L~~~~v~v~~g~V~V~~~~~~~ 113 (130)
T 2jza_A 83 FCLEDGA-----YSVAAYDTQVTNGNVQISIADSDV 113 (130)
T ss_dssp CBSSCCS-----SCCBCCCEEESSSEEEEECCCCCC
T ss_pred CCCCCCc-----CcceEEEEEEECCEEEEEeCCCCC
Confidence 9999997 369999999999999999976543
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.93 E-value=3.2e-27 Score=204.76 Aligned_cols=110 Identities=24% Similarity=0.387 Sum_probs=95.5
Q ss_pred ccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccC----CeeecCCCCeEEcC-C
Q 017058 57 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE----GRIQCPYHGWEYST-D 131 (378)
Q Consensus 57 ~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~----~~l~CpyHgw~f~~-~ 131 (378)
..+.|+.||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.+.+ +.|+||||||+||+ +
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t 91 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT 91 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence 467899999999998889999999999999999 59999999999999999999998753 68999999999998 9
Q ss_pred Cceee--c-CCccc-------cccccccCCceEEcCeEEEcCCCCC
Q 017058 132 GKCEK--M-PSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEP 167 (378)
Q Consensus 132 G~~~~--~-P~~~~-------~~~~l~~~~v~~~~G~I~v~~~~~~ 167 (378)
|+|+. + |.... ...+|++|||++++|+|||++++++
T Consensus 92 G~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 92 GEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp CEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred cCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 99986 3 64211 1357999999999999999998764
No 25
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.93 E-value=9.9e-27 Score=192.16 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=88.6
Q ss_pred CceEEEEecCCCCCCCeEEEEEC-CeeEEEEEeCCCcEEEEccCCCCCCCCCCCccccC-----CeeecCCCCeEEcC-C
Q 017058 59 NFWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-----GRIQCPYHGWEYST-D 131 (378)
Q Consensus 59 ~~W~~v~~~~el~~g~~~~~~~~-g~~vvv~R~~~G~~~a~~n~CpHrg~~L~~g~~~~-----~~l~CpyHgw~f~~-~ 131 (378)
+.|++||.++||++|..+.+.+. |++|+|||..||+++|+.|+|||||++|+.|.+.+ ..|+||||||+||+ |
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t 87 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD 87 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence 46999999999999888888885 79999999999999999999999999998865432 35999999999995 9
Q ss_pred CceeecCCccccccccccCCceEE-cCeEEEcCC
Q 017058 132 GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWIWPG 164 (378)
Q Consensus 132 G~~~~~P~~~~~~~~l~~~~v~~~-~G~I~v~~~ 164 (378)
|+|+..|.. +|++|||+++ +|+|||...
T Consensus 88 G~~~~~p~~-----~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 88 GSCLDDPRV-----SVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp CBBSSCTTC-----BCCEECEEECTTSEEEEEEE
T ss_pred CcCcCCCCC-----ccceEEEEEEeCCEEEEecC
Confidence 999999874 6999999865 799999753
No 26
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.88 E-value=1.7e-22 Score=169.18 Aligned_cols=97 Identities=16% Similarity=0.273 Sum_probs=88.7
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEeC--------------------------CCcEEEEccCCCCCCCCCCCcc
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGS 113 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~--------------------------~G~~~a~~n~CpHrg~~L~~g~ 113 (378)
.|..+ ..++|++|+.+.+...|++++|+|.. +|+++|+.|+|||+|++|+.|.
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~ 83 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 83 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence 35566 89999999999999999999999963 8999999999999999999998
Q ss_pred ccCCeeecCCCCeEEcCCCceeecCCccccccccccCCceE-EcCeEEE
Q 017058 114 VNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 161 (378)
Q Consensus 114 ~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~-~~G~I~v 161 (378)
++++.|+||||||+||.+|+|+.+|... .|+.||+++ .+|.|+|
T Consensus 84 ~~~~~i~CP~Hg~~fd~~G~~~~~P~~~----~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 84 GDFGGYYCPCHGSHYDASGRIRKGPAPL----NLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TTTEEEEETTTTEEEETTCCEEESSCCS----CCCCCCEEESSSSEEEE
T ss_pred CCCCEEEcCCCCCEEcCCCCEeeCCCCC----CCCceeEEEEeCCEEEE
Confidence 8888999999999999999999998753 699999999 8999987
No 27
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.87 E-value=1.1e-22 Score=172.45 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=88.7
Q ss_pred cCceEEEEe-cCCCCCCCeEEEE-ECCeeEEEEEeCCCcE--EEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCc
Q 017058 58 KNFWFPVAF-STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 133 (378)
Q Consensus 58 ~~~W~~v~~-~~el~~g~~~~~~-~~g~~vvv~R~~~G~~--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~ 133 (378)
...|+.++. .+||++|..+.+. +.+++++++|..+|++ +|++|+|||||++|+.|. .++.|+||||||+||.+|+
T Consensus 19 ~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~ 97 (139)
T 1rfs_A 19 LGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGR 97 (139)
T ss_dssp TSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCC
T ss_pred CCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCC
Confidence 356777887 8999987666665 5788888888889999 999999999999999887 5689999999999999999
Q ss_pred eeecCCccccccccccCCceEEcCeEEEcCC
Q 017058 134 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 164 (378)
Q Consensus 134 ~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~ 164 (378)
|+.+|.. ..|++|+|++++|.|||.+.
T Consensus 98 ~~~~P~~----~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 98 VVRGPAP----LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp EEESSCC----SCCCEEEEEEETTEEEEEEC
T ss_pred CccCCCC----CCCCEEEEEEECCEEEEEeC
Confidence 9999974 36999999999999999864
No 28
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.86 E-value=5.6e-22 Score=166.90 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=88.0
Q ss_pred ceEEEEecCCCCCCCeEEEEEC--CeeEEEEEeC---------CCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEE
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCF--EEPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY 128 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~--g~~vvv~R~~---------~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f 128 (378)
-|+.||.++||++|+++.+++. +++++|+|.. +|+++|++|+|||+|++|+. ...++.|+||||||+|
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~-~~~~~~i~CP~Hg~~F 85 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSY-DSSSKTFSCPCHFTEF 85 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEE-ETTTTEEECTTTCCEE
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCc-ccCCCEEECCCCCCEE
Confidence 4889999999999999999985 8999999975 89999999999999999997 3567899999999999
Q ss_pred cC--CCceeecCCccccccccccCCceEE--cCeEEEc
Q 017058 129 ST--DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 162 (378)
Q Consensus 129 ~~--~G~~~~~P~~~~~~~~l~~~~v~~~--~G~I~v~ 162 (378)
|. +|+|+..|... .|++|++++. +|.|||.
T Consensus 86 d~~~~G~~~~gP~~~----~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 86 DAEKAGQMICGEATA----DLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EGGGTTEEEESSCSS----CCCEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEcCCCCC----CCCEEEEEEECCCCEEEEE
Confidence 97 89999999743 6999999998 6789984
No 29
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.83 E-value=5e-21 Score=167.87 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=86.8
Q ss_pred eEEEEecCCCCCCCeEEEEECC--eeEEEEEe---------CCCcEEEEccCCCCCCCCCCCccccCCeeecCCCCeEEc
Q 017058 61 WFPVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 129 (378)
Q Consensus 61 W~~v~~~~el~~g~~~~~~~~g--~~vvv~R~---------~~G~~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~ 129 (378)
+..||.++||++|+.+.+++.+ ++++|+|. .+|+++|++|+|||+|++|+.| .+++.|+||||||+||
T Consensus 51 ~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd 129 (175)
T 4aay_B 51 ANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFD 129 (175)
T ss_dssp CEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEE
T ss_pred cceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEEC
Confidence 5589999999999999999974 58999997 5899999999999999999998 6788999999999999
Q ss_pred C--CCceeecCCccccccccccCCceE-EcCeEEEc
Q 017058 130 T--DGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWIW 162 (378)
Q Consensus 130 ~--~G~~~~~P~~~~~~~~l~~~~v~~-~~G~I~v~ 162 (378)
. +|+|+.+|... .|++|++++ .+|.||+-
T Consensus 130 ~~~tG~~~~gPa~~----~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 130 PEKGGQQVWGQATQ----NLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp GGGTTEEEECSCSS----CCCBEEEEECTTSEEEEE
T ss_pred CCCCceEecCCCCC----CcCEEEEEEEcCCEEEEE
Confidence 6 59999999843 699999999 68999963
No 30
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.72 E-value=3.6e-22 Score=167.31 Aligned_cols=96 Identities=17% Similarity=0.306 Sum_probs=81.2
Q ss_pred ecCCCCCCCeEEEE-ECCeeEEEEEeCCCc--EEEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCccc
Q 017058 66 FSTDLKDDTMVPFD-CFEEPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL 142 (378)
Q Consensus 66 ~~~el~~g~~~~~~-~~g~~vvv~R~~~G~--~~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~ 142 (378)
..+++++|+...+. +.|.+.+++|..+|+ ++|+.|+|||||++|+.|. .++.|+||||||+||.+|+|+.+|+.
T Consensus 22 ~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~-- 98 (133)
T 3azc_A 22 YLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAP-- 98 (133)
Confidence 56678877766665 445566666667999 9999999999999999987 66899999999999999999999974
Q ss_pred cccccccCCceE-EcCeEEEcCCCC
Q 017058 143 RNVKIKSLPCFE-QEGMIWIWPGDE 166 (378)
Q Consensus 143 ~~~~l~~~~v~~-~~G~I~v~~~~~ 166 (378)
.+|++|||++ .+|.|||.++.+
T Consensus 99 --~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 99 --LSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 3699999999 999999987543
No 31
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.80 E-value=2.5e-19 Score=158.72 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=88.1
Q ss_pred cccccCceEEEEecCCCCCCCeEEEEECCeeEEEEEeC--------------------------CCcEEEEccCCCCCCC
Q 017058 54 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRAC 107 (378)
Q Consensus 54 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~--------------------------~G~~~a~~n~CpHrg~ 107 (378)
.......|+.| ..++|++|+.+++++.|++++|+|.. +|+++|+.|+|||+||
T Consensus 56 ~~~~a~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc 134 (185)
T 3cx5_E 56 ADVLAMAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGC 134 (185)
T ss_dssp GGGCCCCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSC
T ss_pred cchhccCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCc
Confidence 33445679999 69999999999999999999999963 6999999999999999
Q ss_pred CCCCccccCCeeecCCCCeEEcCCCceeecCCccccccccccCCceEEcCeEEE
Q 017058 108 PLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 161 (378)
Q Consensus 108 ~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~~G~I~v 161 (378)
.+....++.+.|.||||||+||.+|+|+.+|+.. .|+.+|+.+.+|.|||
T Consensus 135 ~p~~~~~~~~~~~CPcHGs~FD~~G~v~~gPa~~----~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 135 VPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPL----NLEIPAYEFDGDKVIV 184 (185)
T ss_dssp CCEEEETTTTEEEETTTTEEECTTCCEEESSCCS----CCCCCCEEEETTEEEE
T ss_pred eeccCCCCCCEEEcCCCCCEECCCCCEecCCCCC----CcceEEEEEECCEEEE
Confidence 6544334568999999999999999999998743 5888888889999997
No 32
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.79 E-value=5.5e-19 Score=156.83 Aligned_cols=97 Identities=22% Similarity=0.267 Sum_probs=84.9
Q ss_pred ceEEEEecCCCCCCCeEEEEECCeeEEEEEe----------------------------------------CCCcEEEEc
Q 017058 60 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQ 99 (378)
Q Consensus 60 ~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~----------------------------------------~~G~~~a~~ 99 (378)
.|+.| ..++|++|+.+.++..|++|+|+|. .+|+++|+.
T Consensus 48 ~~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~ 126 (187)
T 2qjy_C 48 ASIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW 126 (187)
T ss_dssp CCEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEE
T ss_pred ccEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEe
Confidence 46665 8999999999999999999999992 289999999
Q ss_pred cCCCCCCCCCCCc-cccCCeeecCCCCeEEcCCCceeecCCccccccccccCCceEE-cCeEEE
Q 017058 100 NTCAHRACPLHLG-SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 161 (378)
Q Consensus 100 n~CpHrg~~L~~g-~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~~-~G~I~v 161 (378)
|+|||+||+|+.+ .++.+.|.||||||+||.+|+|+..|... .|+.||+++. +|.|+|
T Consensus 127 ~~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~~----~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 127 GVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPE----NLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCCS----CCCBCSEEEEETTEEEE
T ss_pred CccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCCC----CCceEEEEEEeCCEEEE
Confidence 9999999999983 44458999999999999999999998743 6999999886 689987
No 33
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.79 E-value=3.7e-19 Score=158.75 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=86.8
Q ss_pred EEEecCCCCCCCeEEEEECCeeEEEEEe--------------------------CCCcEEEEccCCCCCCCCCCCccccC
Q 017058 63 PVAFSTDLKDDTMVPFDCFEEPWVIFRG--------------------------KDGIPGCVQNTCAHRACPLHLGSVNE 116 (378)
Q Consensus 63 ~v~~~~el~~g~~~~~~~~g~~vvv~R~--------------------------~~G~~~a~~n~CpHrg~~L~~g~~~~ 116 (378)
..+..++|++|+.+.++..|++++|+|. .+|+++|+.|+|||+||+|+.|.++.
T Consensus 74 v~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~ 153 (196)
T 1pp9_E 74 IEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDF 153 (196)
T ss_dssp EEEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTT
T ss_pred cEEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCC
Confidence 4589999999999999999999999985 28999999999999999999988877
Q ss_pred CeeecCCCCeEEcCCCceeecCCccccccccccCCceE-EcCeEEE
Q 017058 117 GRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 161 (378)
Q Consensus 117 ~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~-~~G~I~v 161 (378)
+.|.||||||+||.+|+++.+|+.. .|..+|+++ .+|.|+|
T Consensus 154 ~~~~CP~HGs~FD~~G~v~~gPa~~----~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 154 GGYYCPCHGSHYDASGRIRKGPAPL----NLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SSEEETTTTEEECTTCCEEESSCCS----CCCCCCEEEETTTEEEE
T ss_pred CEEEeCCCCCEECCCCCCccCCCCC----CCcceeEEEEECCEEEE
Confidence 8999999999999999999999743 699999988 7899987
No 34
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.78 E-value=5.9e-19 Score=149.50 Aligned_cols=93 Identities=19% Similarity=0.246 Sum_probs=83.8
Q ss_pred EecCCCCCCCeEEEEECCeeEEEEEeC----------------------------------------CCcEEEEccCCCC
Q 017058 65 AFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------------DGIPGCVQNTCAH 104 (378)
Q Consensus 65 ~~~~el~~g~~~~~~~~g~~vvv~R~~----------------------------------------~G~~~a~~n~CpH 104 (378)
...++|++|+.++++..|+||+|.|.. +|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 367889999999999999999999851 7899999999999
Q ss_pred CCCCCCC-ccccCCeeecCCCCeEEcCCCceeecCCccccccccccCCceE-EcCeEEE
Q 017058 105 RACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 161 (378)
Q Consensus 105 rg~~L~~-g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~l~~~~v~~-~~G~I~v 161 (378)
+|++|+. +.++++.|.||||||+||.+|+|+.+|+.. .|..||+++ .+|.|+|
T Consensus 86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~~----~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAPE----NLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCCS----CCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCCC----CCCceeEEEEECCEEEE
Confidence 9999998 777778999999999999999999998743 699999998 7999987
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.78 E-value=4.6e-19 Score=154.08 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=82.0
Q ss_pred ecCCCCCCCeEEEEECCee-------------EEEEEe-------------CCCcEEEEccCCCCCCCCCCCccccCCee
Q 017058 66 FSTDLKDDTMVPFDCFEEP-------------WVIFRG-------------KDGIPGCVQNTCAHRACPLHLGSVNEGRI 119 (378)
Q Consensus 66 ~~~el~~g~~~~~~~~g~~-------------vvv~R~-------------~~G~~~a~~n~CpHrg~~L~~g~~~~~~l 119 (378)
..++|++|+.+.+..-|.+ +++.|- .+| ++||.|+|||+|++|+.|.++++.|
T Consensus 26 ~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~~~i 104 (165)
T 1nyk_A 26 RLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADEEAA 104 (165)
T ss_dssp BGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGGTEE
T ss_pred cHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCCCEE
Confidence 6788888887777764443 566665 355 9999999999999999998888999
Q ss_pred ecCCCCeEEcC-CCc-eeecCCccccccccccCCceEEcCeEEEcCCCCCC
Q 017058 120 QCPYHGWEYST-DGK-CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 168 (378)
Q Consensus 120 ~CpyHgw~f~~-~G~-~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~ 168 (378)
+||||||+||. +|. |+.+|+. ..|..|++++.+|.|||+++...+
T Consensus 105 ~CP~Hgs~Fd~~tG~~~~~gPa~----~~L~~~~v~v~~g~V~v~~~~~~~ 151 (165)
T 1nyk_A 105 LCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGEFLGP 151 (165)
T ss_dssp ECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSSCSSC
T ss_pred ECCCCCCEEcCCCCCeeecCCCC----CCCcEEEEEEECCEEEEEecCccc
Confidence 99999999997 586 9999974 369999999999999999876554
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.74 E-value=2.9e-19 Score=157.80 Aligned_cols=92 Identities=18% Similarity=0.325 Sum_probs=81.3
Q ss_pred cCCCCCCCeEEEE-ECCeeEEEEEeCCCcE--EEEccCCCCCCCCCCCccccCCeeecCCCCeEEcCCCceeecCCcccc
Q 017058 67 STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 143 (378)
Q Consensus 67 ~~el~~g~~~~~~-~~g~~vvv~R~~~G~~--~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~f~~~G~~~~~P~~~~~ 143 (378)
.++|++|+...+. +.|++++++|+.+|++ +|+.|+|||+||+|+.+. .++.|.||||||+||.+|+|+.+|+.
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~--- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPAP--- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSCC---
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCCC---
Confidence 4678888877776 6789999999899998 999999999999999877 45789999999999999999999974
Q ss_pred ccccccCCceEEcCeEEEcC
Q 017058 144 NVKIKSLPCFEQEGMIWIWP 163 (378)
Q Consensus 144 ~~~l~~~~v~~~~G~I~v~~ 163 (378)
..|+.||+++.+|.|||.+
T Consensus 146 -~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 146 -LSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp -SCCBCCCCCCSSSSCCCCC
T ss_pred -CCCCeEEEEEECCEEEEEe
Confidence 3699999999999999975
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.66 E-value=6.3e-18 Score=151.66 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=72.4
Q ss_pred EEEEECCeeEEEEEeC------------CCcEEEEccCCCCCCCCCCCccc-----------cCCeeecCCCCeEEcCC-
Q 017058 76 VPFDCFEEPWVIFRGK------------DGIPGCVQNTCAHRACPLHLGSV-----------NEGRIQCPYHGWEYSTD- 131 (378)
Q Consensus 76 ~~~~~~g~~vvv~R~~------------~G~~~a~~n~CpHrg~~L~~g~~-----------~~~~l~CpyHgw~f~~~- 131 (378)
+.+++.+.+++++|.. +|+++|+.|+|||+|++|+.|.+ .++.|+||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 4577888888888875 79999999999999999998853 57899999999999985
Q ss_pred -CceeecCCccccccccccCCceEE--cCeEEEcCC
Q 017058 132 -GKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIWPG 164 (378)
Q Consensus 132 -G~~~~~P~~~~~~~~l~~~~v~~~--~G~I~v~~~ 164 (378)
|+|+..|+.. .|+.|++.+. +|.|||...
T Consensus 136 GG~v~~gPa~~----~L~~~~v~v~~~~g~v~v~g~ 167 (204)
T 1jm1_A 136 GGVVVSGPAPR----PLPIVILDYDSSTGDIYAVGT 167 (204)
T ss_dssp TSEEEESSCCS----CCCBEEEEECTTTCEEEEEEE
T ss_pred CCeEecCCCCC----CCCeEeeEEEecCCEEEEEeC
Confidence 6999998743 5888888877 899998753
No 38
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=21.09 E-value=2.1e+02 Score=27.91 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=33.2
Q ss_pred EEEEEecCCCCeEEEEEEeeccchhhccCchh-HHHHHHHHH-------hHHHhhhHHHHHHHHhhcc
Q 017058 280 QLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF-MQYLWRHFA-------EQVLNEDLRLVLGQQERMN 339 (378)
Q Consensus 280 ~~~~~~P~~~~~tr~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~V~~ED~~ile~qq~~l~ 339 (378)
++....|.++++|.++..+... ++.|. +++...+.. ..+-.+|.++.+.+|+++.
T Consensus 336 ~iRv~~P~gpd~tEvw~~~~~~-----kdapee~k~~~~~~~~~~fGPaG~~~~DD~e~~~~~q~g~~ 398 (457)
T 3gzx_A 336 TIRTWHPRGPNEVEVWAFVLVD-----ADAPEDIKEEFRLQNIRTFNAGGVFEQDDGENWVEIQRVMR 398 (457)
T ss_dssp EEEEEEECSTTCEEEEEEEEEE-----TTSCHHHHHHHHHHHHHHSSTTCTTHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCCCCeEEEEEEEEEe-----CCCCHHHHHHHHHHhhhccCCccCCccchHHHHHHHHHHhc
Confidence 3566799999999996544432 12221 222222111 1234579999999999865
Done!