BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017059
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 176/393 (44%), Positives = 233/393 (59%), Gaps = 38/393 (9%)
Query: 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 69
QGTRLG + PKG ++GLPS K+LFQ+QAERIL +Q++A E I WYIMT
Sbjct: 112 QGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVA-----EKYYGNKCIIPWYIMT 166
Query: 70 SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGV 129
S T ++T+++F HKYFGL+ + V FFQQG +P +S DG+ I+E KV+ APDGNGG+
Sbjct: 167 SGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGL 226
Query: 130 YSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQ 189
Y AL + ++EDM RGI I Y VDN LV+VADP F+G+ I KG GAKVV K P
Sbjct: 227 YRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPT 286
Query: 190 EXXXXXXXXXXXXPLTVVEYSELDPSLASAINQET-GRLRFCWSNVCLHMFTLDFLNQVA 248
E VVEYSE+ SLA+A + + GRL F N+ H FT+ FL V
Sbjct: 287 EPVGVVCRVDGV--YQVVEYSEI--SLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVV 342
Query: 249 NGLEKDSVYHLAEKKIPSI--HGQTV------GFKLEQFIFDAFPYAPSTALFEVLREEE 300
N E +H+A+KKIP + GQ + G K+E+F+FD F +A ++EVLRE+E
Sbjct: 343 NVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDE 402
Query: 301 FAPVKNANGSN-FDTPDSARLLVLRLHTRWVIAAGGFL----------------THSVPL 343
F+P+KNA+ N D P +AR ++ LH WV+ AGG + VP+
Sbjct: 403 FSPLKNADSQNGKDNPTTARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDANDVPI 462
Query: 344 YATGVEVSPLCSYAGENLEAICRGRTFHAPCEI 376
E+SPL SYAGE LE+ + FHAP I
Sbjct: 463 QC---EISPLISYAGEGLESYVADKEFHAPLII 492
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 300 bits (767), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 234/407 (57%), Gaps = 49/407 (12%)
Query: 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 69
QGTRLG + PKG ++GLPS K+LFQ+QAERIL +Q++A E I WYIMT
Sbjct: 112 QGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVA-----EKYYGNKCIIPWYIMT 166
Query: 70 SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGV 129
S T ++T+++F HKYFGL+ + V FFQQG +P +S DG+ I+E KV+ APDGNGG+
Sbjct: 167 SGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGL 226
Query: 130 YSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQ 189
Y AL + ++EDM RGI I Y VDN LV+VADP F+G+ I KG GAKVV K P
Sbjct: 227 YRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPT 286
Query: 190 EXXXXXXXXXXXXPLTVVEYSELDPSLASAINQET-GRLRFCWSNVCLHMFTLDFLNQVA 248
E VVEYSE+ SLA+A + + GRL F N+ H FT+ FL V
Sbjct: 287 EPVGVVCRVDGV--YQVVEYSEI--SLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVV 342
Query: 249 NGLEKDSVYHLAEKKIPSI--HGQTV------GFKLEQFIFDAFPYAPSTALFEVLREEE 300
N E +H+A+KKIP + GQ + G K+E+F+FD F +A ++EVLRE+E
Sbjct: 343 NVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDE 402
Query: 301 FAPVKNANGSN-FDTPDSARLLVLRLHTRWVIAAGGFLTH-------SVPLYATG----- 347
F+P+KNA+ N D P +AR ++ LH WV+ AGG ++P AT
Sbjct: 403 FSPLKNADSQNGKDNPTTARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRSATNGKSET 462
Query: 348 ------------------VEVSPLCSYAGENLEAICRGRTFHAPCEI 376
E+SPL SYAGE LE+ + FHAP I
Sbjct: 463 ITADVNHNLKDANDVPIQCEISPLISYAGEGLESYVADKEFHAPLII 509
>pdb|1VM8|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
pdb|1VM8|B Chain B, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
Length = 534
Score = 292 bits (747), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 175/407 (42%), Positives = 226/407 (55%), Gaps = 49/407 (12%)
Query: 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 69
QGTRLG S PKG ++GLPS K+LFQ+QAERIL +Q+LA E I WYI T
Sbjct: 124 QGTRLGVSYPKGXYDVGLPSHKTLFQIQAERILKLQQLA-----EKHHGNKCTIPWYIXT 178
Query: 70 SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGV 129
S T ++T+++F HK+FGL+ + V FFQQG +P S DG+ I+E KV+ APDGNGG+
Sbjct: 179 SGRTXESTKEFFTKHKFFGLKKENVVFFQQGXLPAXSFDGKIILEEKNKVSXAPDGNGGL 238
Query: 130 YSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQ 189
Y AL + ++ED RGI I Y VDN LV+VADP F+G+ I KG GAKVV K P
Sbjct: 239 YRALAAQNIVEDXEQRGICSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPT 298
Query: 190 EXXXXXXXXXXXXPLTVVEYSELDPSLASAINQET-GRLRFCWSNVCLHMFTLDFLNQVA 248
E VVEYSE+ SLA+A + + GRL F N+ H FT+ FL V
Sbjct: 299 EPVGVVCRVDGV--YQVVEYSEI--SLATAQRRSSDGRLLFNAGNIANHFFTVPFLKDVV 354
Query: 249 NGLEKDSVYHLAEKKIPSIHGQTV--------GFKLEQFIFDAFPYAPSTALFEVLREEE 300
N E +H+A+KKIP + Q G K E+F+FD F +A ++EVLRE+E
Sbjct: 355 NVYEPQLQHHVAQKKIPYVDSQGYFIKPDKPNGIKXEKFVFDIFQFAKKFVVYEVLREDE 414
Query: 301 FAPVKNANGSN-FDTPDSARLLVLRLHTRWVIAAGGFLTH-------SVPLYATG----- 347
F+P+KNA+ N D P +AR + LH WV+ AGG ++P AT
Sbjct: 415 FSPLKNADSQNGKDNPTTARHALXSLHHCWVLNAGGHFIDENGSRLPAIPRSATNGKSEA 474
Query: 348 ------------------VEVSPLCSYAGENLEAICRGRTFHAPCEI 376
E+SPL SYAGE LE + FHAP I
Sbjct: 475 ITADVNHNLKDANDVPIQCEISPLISYAGEGLEGYVADKEFHAPLII 521
>pdb|2YQC|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The Apo-Like
Form
pdb|2YQH|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQH|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQJ|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQJ|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQS|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Product-Binding Form
Length = 486
Score = 271 bits (692), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 220/377 (58%), Gaps = 25/377 (6%)
Query: 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 69
QGTRLGSS PKGC NI LPS KSLFQ+QAE+IL +++LA Q + I+WYIMT
Sbjct: 113 QGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLK---STKKPIINWYIMT 169
Query: 70 SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDG-RFIMETPYKVAKAPDGNGG 128
S T +AT +F + YFGL S QV FF QGT+PC + G + ++E + ++PDGNGG
Sbjct: 170 SGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGG 229
Query: 129 VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYP 188
+Y ALK + +L+D+ ++GIK+I Y VDN LV+VADP F+G+ I K KVVRK
Sbjct: 230 LYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDA 289
Query: 189 QEXXXXXXXXXXXXPLTVVEYSELDPSLASAIN-QETGRLRFCWSNVCLHMFTLDFLNQV 247
E V+EYSE+ LA+ + Q++ +L +N+ H ++++FLN++
Sbjct: 290 NESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVNHYYSVEFLNKM 349
Query: 248 ANGL---EKDSVYHLAEKKIPSIH---------GQTVGFKLEQFIFDAFPYAPSTAL--F 293
+K +H+A+KKIPS++ + G KLEQFIFD FP
Sbjct: 350 IPKWISSQKYLPFHIAKKKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFPSVELNKFGCL 409
Query: 294 EVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPL 353
EV R +EF+P+KNA+G+ DTP + R L ++WVI GG + + VEV
Sbjct: 410 EVDRLDEFSPLKNADGAKNDTPTTCRNHYLERSSKWVIQNGGVIDNQ-----GLVEVDSK 464
Query: 354 CSYAGENLEAICRGRTF 370
SY GE LE + G+ F
Sbjct: 465 TSYGGEGLEFV-NGKHF 480
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
Pyrophosphorylase From Entamoeba Histolytica
Length = 405
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 192/378 (50%), Gaps = 35/378 (9%)
Query: 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMT 69
QG+RLG PKG + KS+FQ+ +ER+L +Q LA SE + IHW++MT
Sbjct: 45 QGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELA----SEYSHQKNVMIHWFLMT 100
Query: 70 SPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGV 129
+ T + YF+ H+YFGL S+Q+ F QG +P V +G+ + E K AP+G+GG+
Sbjct: 101 NEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGL 160
Query: 130 YSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQ 189
+ ALK + +LE M +GIKY + VDN L + DP +GY K+V+K + +
Sbjct: 161 FKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKE 220
Query: 190 EXXXXXXXXXXXXPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN 249
E + VVEY+EL L ++ G + ++ ++ ++ FL + A
Sbjct: 221 EKVGVLVKEQER--IKVVEYTELTDELNKQLS--NGEFIYNCGHISINGYSTSFLEKAA- 275
Query: 250 GLEKDSVYHLAEKKIPSIHGQTV--------GFKLEQFIFDAFPYAPSTALFEVLREEEF 301
E YH+A+KK+P ++ Q + G K E F FD FP A ++FE+ R EF
Sbjct: 276 --EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPLATKVSIFEIQRFIEF 333
Query: 302 APVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLC------S 355
+ +KN+ +FD ++ + RL+ ++ AG + S SP+C S
Sbjct: 334 SALKNSLNESFDNVNTVKRDWYRLNIYYLKKAGAIVDDS---------KSPICEISFRKS 384
Query: 356 YAGENLEAICRGRTFHAP 373
+ E L+ +G+T P
Sbjct: 385 FEEEGLKEF-KGKTIQLP 401
>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
Length = 528
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 34/159 (21%)
Query: 11 GTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTS 70
GT +G PK IG+ + + L ++I + + + + + +M S
Sbjct: 138 GTSMGCKGPKSL--IGVRNENTFLDLTVQQIEHLNK-----------TYNTDVPLVLMNS 184
Query: 71 PFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKA-------- 122
TD+ T+K + + + + ++ F Q P ++K E+ VAK
Sbjct: 185 FNTDEDTKKILQKYNHCRV---KIYTFNQSRYPRINK------ESLLPVAKDVSYSGENT 235
Query: 123 ----PDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 157
P G+G +Y++ +S LL+ G +YI +DN
Sbjct: 236 EAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDN 274
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Query: 69 TSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRF--IMETPYKVAKAPDGN 126
TS T + RKY ++ F D Q +P + +D F E P G+
Sbjct: 136 TSGETKNFLRKYPTLYEVF----DSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGH 191
Query: 127 GGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKA 186
G VY+ L SS L+ + +G +Y+ DN L D L Y +K + +V R+
Sbjct: 192 GDVYTVLYSSGKLDYLLGKGYRYMFISNGDN-LGATLDVRLLDYMHEKQLGFLMEVCRRT 250
>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICX|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICY|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
pdb|2ICY|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
Length = 469
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 67 IMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKA---P 123
+M S T D T K E KY D + F Q P V D + K K P
Sbjct: 133 LMNSFNTHDDTHKIVE--KYTNSNVD-IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYP 189
Query: 124 DGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFI 172
G+G V+ AL +S L+ ++G +Y+ DN L + D T L + I
Sbjct: 190 PGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDLTILKHLI 237
>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|1Z90|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
Length = 469
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 67 IMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKA---P 123
+M S T D T K E KY D + F Q P V D + K K P
Sbjct: 133 LMNSFNTHDDTHKIVE--KYTNSNVD-IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYP 189
Query: 124 DGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFI 172
G+G V+ AL +S L+ ++G +Y+ DN L + D T L + I
Sbjct: 190 PGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDLTILKHLI 237
>pdb|2OEF|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
pdb|2OEG|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
Length = 505
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 122 APDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSA 178
AP G+G +Y+AL S L+++ +G +Y DN LG IDK V A
Sbjct: 187 APPGHGDIYTALYGSGKLQELVEQGYRYXFVSNGDN----------LGATIDKRVLA 233
>pdb|3IZR|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 319
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 88 GLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSAL 133
GL+ Q +FFQ IP G + TP ++ K D G SAL
Sbjct: 132 GLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESAL 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,215,991
Number of Sequences: 62578
Number of extensions: 465508
Number of successful extensions: 1009
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 975
Number of HSP's gapped (non-prelim): 15
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)