Query 017059
Match_columns 378
No_of_seqs 154 out of 679
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02435 probable UDP-N-acetyl 100.0 4E-111 1E-115 854.8 35.2 368 10-378 126-493 (493)
2 PTZ00339 UDP-N-acetylglucosami 100.0 7E-100 2E-104 774.6 33.4 357 10-373 116-478 (482)
3 KOG2388 UDP-N-acetylglucosamin 100.0 9.2E-93 2E-97 704.4 20.2 356 10-377 107-470 (477)
4 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 2.7E-84 5.9E-89 635.2 28.3 292 9-308 24-323 (323)
5 cd00897 UGPase_euk Eukaryotic 100.0 1.8E-82 3.9E-87 613.8 26.4 285 9-324 12-299 (300)
6 cd06424 UGGPase UGGPase cataly 100.0 2E-82 4.3E-87 615.5 26.0 287 9-307 9-314 (315)
7 PLN02474 UTP--glucose-1-phosph 100.0 2E-79 4.4E-84 620.0 28.7 320 9-364 88-410 (469)
8 PF01704 UDPGP: UTP--glucose-1 100.0 1.4E-78 3.1E-83 611.4 14.7 305 9-336 65-382 (420)
9 PLN02830 UDP-sugar pyrophospho 100.0 5.1E-75 1.1E-79 605.5 30.2 342 9-359 137-509 (615)
10 COG4284 UDP-glucose pyrophosph 100.0 9E-73 2E-77 562.9 22.6 341 9-376 114-469 (472)
11 cd04180 UGPase_euk_like Eukary 100.0 2.8E-67 6.1E-72 503.1 26.2 253 9-306 9-266 (266)
12 KOG2638 UDP-glucose pyrophosph 100.0 1.1E-57 2.3E-62 443.7 19.5 289 9-328 112-404 (498)
13 COG1207 GlmU N-acetylglucosami 97.5 0.0074 1.6E-07 61.2 17.1 261 9-359 11-286 (460)
14 PRK14356 glmU bifunctional N-a 97.4 0.037 8.1E-07 56.8 22.3 171 10-249 15-189 (456)
15 PRK14359 glmU bifunctional N-a 97.3 0.062 1.3E-06 54.6 22.3 168 10-249 12-180 (430)
16 cd02540 GT2_GlmU_N_bac N-termi 97.2 0.036 7.7E-07 51.1 17.5 174 9-249 7-182 (229)
17 PRK14357 glmU bifunctional N-a 97.1 0.047 1E-06 56.0 19.1 168 10-249 10-179 (448)
18 cd04189 G1P_TT_long G1P_TT_lon 97.1 0.033 7.1E-07 51.7 16.0 168 10-246 10-180 (236)
19 cd04197 eIF-2B_epsilon_N The N 97.0 0.03 6.5E-07 51.7 14.7 121 10-180 10-141 (217)
20 TIGR01207 rmlA glucose-1-phosp 96.9 0.038 8.3E-07 53.8 15.4 170 9-245 8-181 (286)
21 cd04181 NTP_transferase NTP_tr 96.8 0.036 7.7E-07 50.4 14.1 168 10-245 8-178 (217)
22 PRK15480 glucose-1-phosphate t 96.8 0.071 1.5E-06 52.1 16.2 170 10-246 13-186 (292)
23 PF00483 NTP_transferase: Nucl 96.8 0.011 2.3E-07 55.3 10.1 177 9-249 8-192 (248)
24 PRK14360 glmU bifunctional N-a 96.7 0.22 4.8E-06 51.0 20.5 174 10-249 11-186 (450)
25 cd06915 NTP_transferase_WcbM_l 96.7 0.064 1.4E-06 48.8 14.6 170 9-247 7-180 (223)
26 PRK05293 glgC glucose-1-phosph 96.7 0.049 1.1E-06 54.6 14.9 184 10-249 13-205 (380)
27 cd06428 M1P_guanylylT_A_like_N 96.7 0.089 1.9E-06 49.8 15.8 175 10-247 10-190 (257)
28 cd02538 G1P_TT_short G1P_TT_sh 96.6 0.042 9E-07 51.4 13.1 169 10-245 10-182 (240)
29 TIGR02092 glgD glucose-1-phosp 96.6 0.046 1E-06 54.6 13.9 182 10-249 12-203 (369)
30 TIGR01208 rmlA_long glucose-1- 96.5 0.081 1.7E-06 52.6 14.8 170 10-246 9-181 (353)
31 cd06422 NTP_transferase_like_1 96.5 0.074 1.6E-06 48.9 13.6 166 9-247 8-180 (221)
32 PRK14352 glmU bifunctional N-a 96.4 0.15 3.2E-06 53.1 16.4 175 10-249 14-191 (482)
33 cd06425 M1P_guanylylT_B_like_N 96.3 0.13 2.7E-06 47.9 14.2 173 10-247 10-186 (233)
34 cd02509 GDP-M1P_Guanylyltransf 96.1 0.35 7.6E-06 46.6 16.7 188 10-251 10-209 (274)
35 PRK14358 glmU bifunctional N-a 96.0 0.22 4.8E-06 51.9 15.5 167 10-242 17-184 (481)
36 PRK00844 glgC glucose-1-phosph 95.9 0.26 5.7E-06 50.1 15.2 191 10-249 15-212 (407)
37 cd02524 G1P_cytidylyltransfera 95.9 0.36 7.8E-06 45.6 15.2 182 9-246 7-198 (253)
38 cd06426 NTP_transferase_like_2 95.9 0.19 4.1E-06 45.9 12.9 166 9-246 7-175 (220)
39 PRK14353 glmU bifunctional N-a 95.8 0.38 8.2E-06 49.3 16.0 171 10-249 15-189 (446)
40 PRK05450 3-deoxy-manno-octulos 95.6 0.26 5.7E-06 46.0 13.1 173 10-249 12-194 (245)
41 PRK14355 glmU bifunctional N-a 95.6 0.38 8.2E-06 49.6 15.2 175 10-249 13-188 (459)
42 TIGR02623 G1P_cyt_trans glucos 95.6 0.41 8.8E-06 45.5 14.3 182 9-244 8-195 (254)
43 cd02508 ADP_Glucose_PP ADP-glu 95.5 0.29 6.2E-06 44.5 12.7 129 9-179 7-142 (200)
44 TIGR01105 galF UTP-glucose-1-p 95.5 0.51 1.1E-05 46.2 14.9 189 10-246 13-224 (297)
45 PLN02241 glucose-1-phosphate a 95.4 0.4 8.8E-06 49.3 14.7 202 10-249 13-231 (436)
46 cd02523 PC_cytidylyltransferas 95.1 0.63 1.4E-05 42.9 13.6 168 10-249 8-178 (229)
47 PRK02862 glgC glucose-1-phosph 95.0 1 2.2E-05 46.3 16.2 195 10-249 13-225 (429)
48 PRK00725 glgC glucose-1-phosph 95.0 0.92 2E-05 46.5 15.6 190 10-249 25-224 (425)
49 TIGR01173 glmU UDP-N-acetylglu 94.8 0.83 1.8E-05 46.6 14.8 169 10-249 10-181 (451)
50 PRK10122 GalU regulator GalF; 94.6 1.3 2.9E-05 43.2 15.1 178 9-247 12-225 (297)
51 TIGR02091 glgC glucose-1-phosp 94.5 1.1 2.3E-05 44.6 14.3 191 9-249 7-206 (361)
52 PRK14354 glmU bifunctional N-a 94.4 1.7 3.7E-05 44.6 16.1 171 10-249 12-185 (458)
53 cd04198 eIF-2B_gamma_N The N-t 94.2 0.43 9.3E-06 44.0 10.2 124 10-184 10-137 (214)
54 COG1213 Predicted sugar nucleo 94.2 0.12 2.5E-06 48.9 6.3 67 9-100 12-78 (239)
55 TIGR01099 galU UTP-glucose-1-p 93.6 1.7 3.7E-05 40.9 13.3 192 10-247 10-213 (260)
56 TIGR01479 GMP_PMI mannose-1-ph 93.3 4 8.6E-05 42.6 16.4 185 9-250 9-210 (468)
57 cd02517 CMP-KDO-Synthetase CMP 92.8 3.5 7.6E-05 38.2 13.9 170 10-249 11-191 (239)
58 PLN02917 CMP-KDO synthetase 91.8 8.2 0.00018 37.7 15.6 171 10-247 57-236 (293)
59 PRK09451 glmU bifunctional N-a 91.7 4.6 9.9E-05 41.6 14.4 168 10-249 15-185 (456)
60 PF14134 DUF4301: Domain of un 91.4 1.9 4.2E-05 44.9 10.9 127 12-160 159-296 (513)
61 PF12804 NTP_transf_3: MobA-li 91.4 2.1 4.6E-05 36.9 10.0 50 9-82 7-56 (160)
62 PRK13389 UTP--glucose-1-phosph 91.1 4.5 9.8E-05 39.6 13.0 192 10-245 18-226 (302)
63 cd02541 UGPase_prokaryotic Pro 90.4 6.3 0.00014 37.2 13.1 54 10-83 10-66 (267)
64 COG1208 GCD1 Nucleoside-diphos 90.1 5.4 0.00012 40.1 12.8 170 10-245 11-184 (358)
65 cd02513 CMP-NeuAc_Synthase CMP 90.0 13 0.00028 33.7 14.4 172 10-247 11-189 (223)
66 PRK13385 2-C-methyl-D-erythrit 89.0 0.74 1.6E-05 42.8 5.3 57 9-83 11-67 (230)
67 TIGR00454 conserved hypothetic 88.4 0.66 1.4E-05 42.1 4.5 54 9-83 9-62 (183)
68 cd02507 eIF-2B_gamma_N_like Th 87.4 6 0.00013 36.4 10.3 156 10-215 10-180 (216)
69 KOG1460 GDP-mannose pyrophosph 86.7 15 0.00033 36.2 12.7 238 6-309 10-255 (407)
70 COG1209 RfbA dTDP-glucose pyro 86.7 13 0.00029 36.1 12.2 150 9-214 9-164 (286)
71 PLN02728 2-C-methyl-D-erythrit 86.5 1.2 2.6E-05 42.6 5.2 55 10-82 34-88 (252)
72 COG0746 MobA Molybdopterin-gua 85.3 5.5 0.00012 36.5 8.7 99 10-175 14-112 (192)
73 PRK13368 3-deoxy-manno-octulos 84.8 26 0.00055 32.3 13.2 50 10-83 12-61 (238)
74 PF01128 IspD: 2-C-methyl-D-er 84.6 1.7 3.6E-05 40.9 5.0 57 9-83 9-65 (221)
75 cd04183 GT2_BcE_like GT2_BcbE_ 84.6 25 0.00053 32.2 12.9 31 9-42 7-40 (231)
76 TIGR03310 matur_ygfJ molybdenu 83.4 1.7 3.6E-05 38.5 4.4 28 10-42 9-36 (188)
77 KOG1322 GDP-mannose pyrophosph 81.9 60 0.0013 32.6 15.2 176 10-248 19-198 (371)
78 cd04182 GT_2_like_f GT_2_like_ 81.5 1.9 4.1E-05 37.8 4.0 29 10-43 10-38 (186)
79 TIGR00453 ispD 2-C-methyl-D-er 79.7 1.4 3.1E-05 40.3 2.6 31 9-42 8-38 (217)
80 PRK00560 molybdopterin-guanine 76.5 2.5 5.5E-05 38.4 3.3 28 10-42 18-46 (196)
81 COG1211 IspD 4-diphosphocytidy 74.9 5.1 0.00011 37.9 4.9 56 9-82 13-68 (230)
82 TIGR00466 kdsB 3-deoxy-D-manno 74.2 7.5 0.00016 36.6 5.9 28 10-43 9-36 (238)
83 cd02503 MobA MobA catalyzes th 73.9 2.7 5.9E-05 37.1 2.7 29 10-43 10-38 (181)
84 cd02516 CDP-ME_synthetase CDP- 72.8 2.7 5.9E-05 38.2 2.5 30 10-42 10-39 (218)
85 PRK00155 ispD 2-C-methyl-D-ery 71.9 2.9 6.3E-05 38.6 2.5 30 10-42 13-42 (227)
86 TIGR03202 pucB xanthine dehydr 71.0 3.6 7.9E-05 36.8 2.9 29 9-42 9-37 (190)
87 TIGR02665 molyb_mobA molybdopt 70.1 3.8 8.3E-05 36.3 2.8 29 10-42 10-38 (186)
88 PRK14500 putative bifunctional 69.1 4 8.8E-05 40.9 2.9 28 10-42 170-197 (346)
89 COG2266 GTP:adenosylcobinamide 68.5 8 0.00017 35.1 4.4 53 9-83 9-61 (177)
90 PRK02726 molybdopterin-guanine 68.5 4.3 9.3E-05 37.0 2.8 28 10-42 17-44 (200)
91 PRK14490 putative bifunctional 67.1 5 0.00011 40.4 3.2 28 10-42 184-211 (369)
92 PRK00317 mobA molybdopterin-gu 65.1 5.3 0.00012 35.8 2.7 29 10-42 13-41 (193)
93 COG1861 SpsF Spore coat polysa 59.5 12 0.00025 35.4 3.8 56 12-85 10-68 (241)
94 PRK09382 ispDF bifunctional 2- 59.5 7.4 0.00016 39.5 2.8 30 10-42 15-44 (378)
95 PRK14489 putative bifunctional 59.4 8.3 0.00018 38.8 3.2 29 10-42 15-43 (366)
96 PF02348 CTP_transf_3: Cytidyl 54.7 20 0.00044 32.4 4.6 33 8-44 3-37 (217)
97 KOG0734 AAA+-type ATPase conta 47.6 17 0.00036 38.8 3.1 55 12-85 330-393 (752)
98 PF13106 DUF3961: Domain of un 42.7 14 0.00031 25.2 1.1 15 84-98 4-21 (40)
99 cd02518 GT2_SpsF SpsF is a gly 41.6 48 0.001 30.5 5.0 53 10-83 9-62 (233)
100 COG0448 GlgC ADP-glucose pyrop 39.9 1.1E+02 0.0025 31.2 7.6 154 64-252 54-212 (393)
101 COG0836 {ManC} Mannose-1-phosp 38.6 44 0.00096 33.3 4.4 189 10-251 11-213 (333)
102 PF10662 PduV-EutP: Ethanolami 37.2 25 0.00054 30.8 2.2 30 324-365 109-138 (143)
103 TIGR02180 GRX_euk Glutaredoxin 36.8 1.2E+02 0.0027 22.5 5.9 56 63-142 28-83 (84)
104 PRK15460 cpsB mannose-1-phosph 34.9 60 0.0013 34.1 4.9 184 10-250 15-219 (478)
105 COG1212 KdsB CMP-2-keto-3-deox 32.2 84 0.0018 29.9 4.9 74 26-107 23-107 (247)
106 COG2068 Uncharacterized MobA-r 29.1 48 0.001 30.7 2.7 109 9-172 14-122 (199)
107 COG4750 LicC CTP:phosphocholin 28.0 41 0.00089 31.3 2.0 31 9-42 9-42 (231)
108 TIGR01460 HAD-SF-IIA Haloacid 27.7 86 0.0019 29.2 4.3 34 62-95 30-65 (236)
109 PF09147 DUF1933: Domain of un 23.8 11 0.00023 34.4 -2.5 26 283-308 150-176 (201)
110 PHA03050 glutaredoxin; Provisi 23.3 4.1E+02 0.0089 21.7 7.1 35 99-145 67-101 (108)
111 COG1222 RPT1 ATP-dependent 26S 20.8 50 0.0011 33.6 1.3 24 12-35 178-202 (406)
112 COG1535 EntB Isochorismate hyd 20.6 4.3E+02 0.0093 24.5 7.0 100 31-155 50-151 (218)
113 COG0641 AslB Arylsulfatase reg 20.3 2.1E+02 0.0045 29.2 5.6 119 16-160 121-241 (378)
No 1
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=4.5e-111 Score=854.82 Aligned_cols=368 Identities=90% Similarity=1.453 Sum_probs=346.2
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
||||||+++|||||||++|++|||||+++|||+++|++|.++.+.. ++++++||||||||+.||++|++||++|+|||+
T Consensus 126 qGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~-~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl 204 (493)
T PLN02435 126 QGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEG-PGRPVTIHWYIMTSPFTDEATRKFFESHKYFGL 204 (493)
T ss_pred cccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccc-cCCCCceeEEEeCCcchhHHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999999999998765321 136799999999999999999999999999999
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHhH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLG 169 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~lG 169 (378)
+++||+||+|+++||++.+|+++++++++++|+|+||||+|.||++||+|++|+++|++|+||+||||+|++++||.|||
T Consensus 205 ~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG 284 (493)
T PLN02435 205 EADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLG 284 (493)
T ss_pred CccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHHhh
Q 017059 170 YFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN 249 (378)
Q Consensus 170 ~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~~~ 249 (378)
|++.+++|+++||++|+.|+|+||++|+.+++|+++||||+|+++++++..++++|.+.|.+|||||||||++||+++++
T Consensus 285 ~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 285 YFIDKGVASAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred HHHhcCCceEEEeeecCCCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccchhhHHHhhccHHHHHHHHH
Confidence 99999999999999999999999999997568999999999999999887776679999999999999999999999987
Q ss_pred ccccCccceeeecccCCCCCCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCHHHHHHHHHHHHHHH
Q 017059 250 GLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRW 329 (378)
Q Consensus 250 ~~~~~lp~h~a~Kkip~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~~~~~~~ 329 (378)
..+..+|||+|+|||||+|+.+||||||+||||+|++++++.+++|+|++|||||||++|...|||+|||++|+++|+||
T Consensus 365 ~~~~~l~~H~A~Kkip~~~~~~ngiK~E~FiFDvf~~a~~~~~~eV~R~~EFaPlKN~~g~~~Dsp~tar~~l~~~~~~w 444 (493)
T PLN02435 365 GLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPESARLLVLRLHTRW 444 (493)
T ss_pred hhhhcCCceeeccccCccCCCcceEEeeeeeecchhhcCceEEEEEchhhccCcccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 65567999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHcCCeeccCCCCccCcEEecccceeeCCCchhhhcCcEecCCccccC
Q 017059 330 VIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEIGF 378 (378)
Q Consensus 330 l~~~g~~~~~~~~~~~~~~eisP~~sy~ge~l~~~~~~~~~~~p~~~~~ 378 (378)
|++||+.+.++.+.....|||||++||+||||+.+++|++|..|.+++|
T Consensus 445 l~~aG~~~~~~~~~~~~~vEisP~~sY~gE~L~~~~~~~~~~~~~~~~~ 493 (493)
T PLN02435 445 VVAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEISF 493 (493)
T ss_pred HHHcCCEecCCccccCCcEEeCCceeeCCCCchhhcCCCeecCceeecC
Confidence 9999998754332123469999999999999999999999999999876
No 2
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=7.1e-100 Score=774.64 Aligned_cols=357 Identities=40% Similarity=0.658 Sum_probs=327.9
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
||||||++.||||+||++++++||||++++||+++++++.++.+. .+++.|||+||||..||+.|++||++|+|||+
T Consensus 116 ~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~---~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl 192 (482)
T PTZ00339 116 LGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGG---GDDPTIYILVLTSSFNHDQTRQFLEENNFFGL 192 (482)
T ss_pred CcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhccccc---ccCCCCCEEEEeCcchHHHHHHHHHhccccCC
Confidence 999999999999999999999999999999999999998665431 24678999999999999999999999999999
Q ss_pred CCCcEEEEEcCceeEEec-CCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 90 ESDQVTFFQQGTIPCVSK-DGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~-~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
++++|+||+|+++||++. +|+++++++++++|+|+||||+|.||+++|+|++|.++|++|+||+||||+|++++||.||
T Consensus 193 ~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~fl 272 (482)
T PTZ00339 193 DKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFI 272 (482)
T ss_pred CcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHh
Confidence 999999999999999985 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-cEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHH
Q 017059 169 GYFIDKGV-SAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQV 247 (378)
Q Consensus 169 G~~~~~~~-~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~ 247 (378)
||++.+++ +++.||+ |+.|+|+||++|+. +|+++||||+||+++.++..++.+|.+.|++||||||||+++||+++
T Consensus 273 G~~~~~~~~~~~~kvv-k~~~~EkvG~~~~~--~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fsl~fl~~~ 349 (482)
T PTZ00339 273 GLASSFPAHDVLNKCV-KREDDESVGVFCLK--DYEWQVVEYTEINERILNNDELLTGELAFNYGNICSHIFSLDFLKKV 349 (482)
T ss_pred HHHHHCCchhheeeee-cCCCCCceeEEEEe--CCcccEEEEeccChhhhhcccccCCeecccccceEEEEEEHHHHHHH
Confidence 99999999 8889999 77899999999997 78999999999999988776655799999999999999999999998
Q ss_pred hh-ccccCccceeeecccCCCC---CCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCHHHHHHHHH
Q 017059 248 AN-GLEKDSVYHLAEKKIPSIH---GQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVL 323 (378)
Q Consensus 248 ~~-~~~~~lp~h~a~Kkip~~~---~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~ 323 (378)
++ .....||||+|+|||||+| ..+||+|||+||||+|++++++.+++|+|++|||||||++|...|||+|||++|+
T Consensus 350 ~~~~~~~~l~~H~a~Kkip~~~~~~~~png~K~E~FiFDvf~~~~~~~~~ev~R~~eFsPlKNa~g~~~d~p~tar~~l~ 429 (482)
T PTZ00339 350 AANRLYESTPYHAARKKIPYINGPTDKTMGIKLEAFIFDIFRYAKNVLILEVDREDEFAPIKNADGAAADTILNAQKLLL 429 (482)
T ss_pred hhhhhhhcCCceeeccccCeeCCCCCCcceeeehhhhhhHHHhccccceeeechhhccccccCCCCCCCCCHHHHHHHHH
Confidence 75 3345699999999999998 4579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeccCCCCccCcEEecccceeeCCCchhhhcCcEecCC
Q 017059 324 RLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAP 373 (378)
Q Consensus 324 ~~~~~~l~~~g~~~~~~~~~~~~~~eisP~~sy~ge~l~~~~~~~~~~~p 373 (378)
++|+|||++||+.+.+........|||||++||+||||+.+ +|++|..+
T Consensus 430 ~~~~~wl~~ag~~~~~~~~~~~~~~Eisp~~sy~ge~l~~~-~~~~~~~~ 478 (482)
T PTZ00339 430 SLHTRWLEAALETVAGNPREGLNLCEISPLVSYGGEGLFQY-PGKKILGL 478 (482)
T ss_pred HHHHHHHHHCCCeeeccccCCCceEEecCcceeCCCCcccc-cCceecCC
Confidence 99999999999987532111124699999999999999976 78887743
No 3
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=9.2e-93 Score=704.37 Aligned_cols=356 Identities=56% Similarity=0.900 Sum_probs=338.8
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
||||||+++|||++|+++++++||||+++|+|+++|++|..+.. .++.||||||||+.|++.|++||+.|+|||+
T Consensus 107 qgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~-----~~~~I~w~ImtS~~T~e~T~~~f~~~~~FGl 181 (477)
T KOG2388|consen 107 QGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVS-----DGVDIPWYIMTSAFTHEATLEYFESHKYFGL 181 (477)
T ss_pred ceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhc-----cCCceEEEEecCCCccHHhHhHHhhcCCCCC
Confidence 99999999999999999999999999999999999999988765 5689999999999999999999999999999
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHhH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLG 169 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~lG 169 (378)
+++||+||+|+++||++.+|+++|+.+.+++++|+||||+|.|+.++ |++|.+||++|+|||||||+|++++||.|||
T Consensus 182 ~~~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm~~rgi~~~hiy~VdnvL~k~aDP~fiG 259 (477)
T KOG2388|consen 182 KPEQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDMAARGIFYDHIYCVDNVLLKVADPVFIG 259 (477)
T ss_pred ChhHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhh--hhHHHhhcccEEEEEEecceeeEecccceee
Confidence 99999999999999999999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHHhh
Q 017059 170 YFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN 249 (378)
Q Consensus 170 ~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~~~ 249 (378)
|++.+++|+++|+|+|.+|.|.||++|+.+. |.++||||||++++++....+++|++.|++||||||+|+++||+++..
T Consensus 260 ~~it~~~d~~~k~V~k~~p~E~vG~~~~~~~-G~~~vvEYsEi~~~~a~~~~~d~g~l~~~agnI~nh~ft~dFLkk~~~ 338 (477)
T KOG2388|consen 260 FSITKEADVAAKVVPKINPGEVVGIVALKGQ-GTPLVVEYSELDAELAKAKAPDGGRLLFNAGNICNHFFTLDFLKKVTR 338 (477)
T ss_pred EEeechhhHhhhhccccCCCCceEEEEecCC-CceeEEEecccCHHHHhhcccccCccccCCccHHHHHHhhHHHHHhhh
Confidence 9999999999999999999999999999843 899999999999999988777679999999999999999999999988
Q ss_pred ccccCccceeeecccCCCCC--------CcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCHHHHHHH
Q 017059 250 GLEKDSVYHLAEKKIPSIHG--------QTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLL 321 (378)
Q Consensus 250 ~~~~~lp~h~a~Kkip~~~~--------~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~ 321 (378)
.....+|+|.|.|||||++. .+||+|+|+||||+|++++++++++|+|++||||+||+.+...|||+|||.+
T Consensus 339 ~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~E~fifdvf~~~k~f~~meV~Re~efSPlKng~~~~~D~p~T~~~~ 418 (477)
T KOG2388|consen 339 ASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKLEQFIFDVFPSAKKFGLMEVPREEEFSPLKNGGKSSTDNPSTARIA 418 (477)
T ss_pred cccccchhhhhhccccccccCCcccCCCCCCceeEEeeeeeecccccceeEEecchhhhcCccccCCCCCCCChhHHHHH
Confidence 77667999999999999873 4799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCeeccCCCCccCcEEecccceeeCCCchhhhcCcEecCCcccc
Q 017059 322 VLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEIG 377 (378)
Q Consensus 322 l~~~~~~~l~~~g~~~~~~~~~~~~~~eisP~~sy~ge~l~~~~~~~~~~~p~~~~ 377 (378)
++++|++|+..+|+.+.+. ...|||||+|||+||+||+++.|++|+.|.++.
T Consensus 419 ~l~~h~~wi~~~g~~f~~~----~~~~evs~~vsy~GE~lEs~~~g~~F~s~~~~~ 470 (477)
T KOG2388|consen 419 LLRLHIRWIEKAGGIFSDA----EAVVEVSPLVSYAGENLESVPSGFEFNSPLYLD 470 (477)
T ss_pred HHHhhhhehhccCcEEecC----cceEEecceeeecccchhhccccceecCceeEe
Confidence 9999999999999998653 246999999999999999999999999999863
No 4
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=2.7e-84 Score=635.17 Aligned_cols=292 Identities=54% Similarity=0.887 Sum_probs=278.0
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+||||||+++||+++||++++++||||+++++|++++.++.+..+ ..+.|||+||||+.||++|++||++++|||
T Consensus 24 G~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~-----~~~~ip~~imtS~~t~~~t~~~~~~~~~fG 98 (323)
T cd04193 24 GQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASG-----KKVPIPWYIMTSEATHEETRKFFKENNYFG 98 (323)
T ss_pred CcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccC-----CCCCceEEEEcChhHhHHHHHHHHhCCcCC
Confidence 399999999999999999999999999999999999999876543 568999999999999999999999999999
Q ss_pred CCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
+++++|+||+|+++||++.+|+++++++++++|+|+||||+|.+|++||+|++|+++|+||++|+||||+|++++||.||
T Consensus 99 l~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~l 178 (323)
T cd04193 99 LDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVADPVFI 178 (323)
T ss_pred CCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccccccCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHHh
Q 017059 169 GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVA 248 (378)
Q Consensus 169 G~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~~ 248 (378)
||++++++|+++||++|+.|+|+||++|++ ||+++||||+|+|++.+.+++ ++|++.|++||||+|||+++||++++
T Consensus 179 G~~~~~~~~~~~kvv~k~~~~ekvG~l~~~--~g~~~vvEysel~~~~~~~~~-~~g~l~f~~~ni~~~~fsl~fl~~~~ 255 (323)
T cd04193 179 GFCISKGADVGAKVVRKRYPTEKVGVVVLV--DGKPQVVEYSEISDELAEKRD-ADGELQYNAGNIANHFFSLDFLEKAA 255 (323)
T ss_pred HHHHHcCCceEEEEEECCCCCCceeEEEEE--CCeEEEEEeecCCHHHHhccC-cCCcEecccchHhhheeCHHHHHHHH
Confidence 999999999999999999999999999997 799999999999999988764 68999999999999999999999998
Q ss_pred hccccCccceeeecccCCCC--------CCcceeeehhhhhhccccCCceEEEEEecCcceeccccCC
Q 017059 249 NGLEKDSVYHLAEKKIPSIH--------GQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNAN 308 (378)
Q Consensus 249 ~~~~~~lp~h~a~Kkip~~~--------~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~ 308 (378)
+.....||||+|.||+||++ +.+|++|||+||||+|++++++.+++|+|++|||||||++
T Consensus 256 ~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~~~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 256 EMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFAKNFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred hhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhCCceEEEEEChhhccccCcCCC
Confidence 76544699999999999988 5689999999999999999999999999999999999984
No 5
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=1.8e-82 Score=613.75 Aligned_cols=285 Identities=20% Similarity=0.246 Sum_probs=263.5
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+||||||+++|||++|| ++++||||++++||+++++. +++.|||+||||+.||++|++||++|++
T Consensus 12 G~GTRLG~~~pKg~~~v--~~~~s~l~l~~~~i~~l~~~-----------~~~~iPl~iMtS~~T~~~T~~~l~~~~~-- 76 (300)
T cd00897 12 GLGTSMGCTGPKSLIEV--RDGKTFLDLTVQQIEHLNKT-----------YGVDVPLVLMNSFNTDEDTKKILKKYAG-- 76 (300)
T ss_pred CcccccCCCCCceeeec--CCCCcHHHHHHHHHHHHHHH-----------cCCCceEEEECCCcchHHHHHHHHHcCC--
Confidence 39999999999999988 79999999999999999986 6799999999999999999999999876
Q ss_pred CCCCcEEEEEcCceeEEecCCccccc---CCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIME---TPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~---~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
++++|.+|+|+++||++.+|+++++ ++++++|+|+||||+|.||++||+|++|+++|+||++|+||||+ ++++||
T Consensus 77 -~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL-~a~~Dp 154 (300)
T cd00897 77 -VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNL-GATVDL 154 (300)
T ss_pred -CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccc-cccCCH
Confidence 7799999999999999999999987 78899999999999999999999999999999999999999995 589999
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
.||||++.+++++++||++|+.|+||||++|++ +|+++||||+|+|++.++++. +.+.|..+|||||||+++||+
T Consensus 155 ~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~--~g~~~vvEyse~p~e~~~~~~---~~~~~~~~nt~n~~~~l~~L~ 229 (300)
T cd00897 155 RILNHMVDNKAEYIMEVTDKTRADVKGGTLIQY--EGKLRLLEIAQVPKEHVDEFK---SIKKFKIFNTNNLWVNLKAVK 229 (300)
T ss_pred HHHHHHHhcCCceEEEEeecCCCCCcccEEEEE--CCEEEEEEeccCCHHHHHhhc---CcccceEEEEeEEEEEHHHHH
Confidence 999999999999999999999999999999998 799999999999999987754 445567789999999999999
Q ss_pred HHhhccccCccceeeecccCCCCCCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCHHHHHHHHHH
Q 017059 246 QVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLR 324 (378)
Q Consensus 246 ~~~~~~~~~lp~h~a~Kkip~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~~ 324 (378)
++++.....||+|+|.|+|+. .+|++|||+||||+|++++++.+++|+|+ ||+||||+++ ....|+|+|.
T Consensus 230 ~~~~~~~~~lp~h~~~K~v~p---~~~~~qlE~~i~da~~~~~~~~~~eV~R~-rF~PvKn~~d-----ll~~~sd~y~ 299 (300)
T cd00897 230 RVVEENALDLEIIVNPKTVDG---GLNVIQLETAVGAAIKNFDNALGVNVPRS-RFLPVKTTSD-----LLLVRSDLYS 299 (300)
T ss_pred HHHHhccCCCCeeecccccCC---CCCEEEeHhHhhhHHHhCCCcEEEEEChh-hcCCCCChHH-----HHhhhhcccc
Confidence 998765457999999999963 28999999999999999999999999999 7999999988 6777777663
No 6
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=2e-82 Score=615.48 Aligned_cols=287 Identities=27% Similarity=0.328 Sum_probs=258.7
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+||||||+++|||+|||++++++||||+++|||+++|++|.+ .+++.|||+||||+.||++|++||++|+|||
T Consensus 9 G~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~-------~~~~~IPl~IMTS~~Th~~T~~~fe~n~yFG 81 (315)
T cd06424 9 GLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKK-------GEKMEIPFVIMTSDDTHSKTLKLLEENNYFG 81 (315)
T ss_pred CCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhc-------cCCCceeEEEECCCchhHHHHHHHHHCCccC
Confidence 499999999999999999999999999999999999999864 1678999999999999999999999999999
Q ss_pred CCCCcEEEEEcCceeEEe-cCCcc--cccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 89 LESDQVTFFQQGTIPCVS-KDGRF--IMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~-~~g~~--~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
++++||+||+|+++||++ .+|++ .++++++++|+|+||||||.||+++|+||+|+++|+||++|+||||+|++++||
T Consensus 82 l~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~adP 161 (315)
T cd06424 82 LEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFKAIP 161 (315)
T ss_pred CCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhccCh
Confidence 999999999999999997 89998 578899999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEec-CCCCeEE--EEecCCChhhhhhccC------CCCcccccccccee
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG-KGGPLTV--VEYSELDPSLASAINQ------ETGRLRFCWSNVCL 236 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~-~~g~~~v--vEYsel~~~~~~~~~~------~~g~l~f~~gNi~~ 236 (378)
.|+|+++.+++|+++|||+| .|+|+||++|+.+ .||+++| ||||||++++++.... .+|.+.| +||||+
T Consensus 162 ~fiG~~~~~~~d~~~k~v~~-~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f-~gNi~~ 239 (315)
T cd06424 162 AVLGVSATKSLDMNSLTVPR-KPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPF-PGNINQ 239 (315)
T ss_pred hhEEEEecCCCceEeEEEeC-CCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccC-CCeeee
Confidence 99999999999999999985 6899999999853 4789998 9999999998774321 2445666 699999
Q ss_pred eeEeHHHHHHHhhccccCccceeeecccCCCCCC----cceeeehhhhhhc---cccCCceEEEEEecCcceeccccC
Q 017059 237 HMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQ----TVGFKLEQFIFDA---FPYAPSTALFEVLREEEFAPVKNA 307 (378)
Q Consensus 237 ~~~~l~fl~~~~~~~~~~lp~h~a~Kkip~~~~~----~~~~klE~fifD~---~~~~~~~~~~~V~R~~eFsPvKn~ 307 (378)
|+|++++|.++++. ..++|...+++||.|++ ..++|||+||||+ |+.+.++++++|+|++|||||||+
T Consensus 240 ~~f~l~~~~~~l~~---~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~fsP~KN~ 314 (315)
T cd06424 240 LVFSLGPYMDELEK---TKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRVGFTVLDRWLCFSPVKNN 314 (315)
T ss_pred EEEeHHHHHHHHhh---ccccCeeeecCCcccCCCCeecCchHHHHHHHHHHHhhcccceeEEEEEchhhcccccCCC
Confidence 99999999998874 34555555678888853 4678999999999 555889999999999999999996
No 7
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=2e-79 Score=619.96 Aligned_cols=320 Identities=19% Similarity=0.210 Sum_probs=286.8
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+|||||||++|||+|| +++++||||++++||+++++. +++.|||+||||+.||++|++||++|++|+
T Consensus 88 GlGTrmG~~~PKs~i~--v~~~~sfldl~~~qi~~l~~~-----------~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~ 154 (469)
T PLN02474 88 GLGTTMGCTGPKSVIE--VRNGLTFLDLIVIQIENLNKK-----------YGCNVPLLLMNSFNTHDDTQKIVEKYTNSN 154 (469)
T ss_pred CcccccCCCCCceeEE--cCCCCcHHHHHHHHHHHHHHH-----------cCCCceEEEECCCchhHHHHHHHHHcCCCc
Confidence 3999999999999997 589999999999999999876 679999999999999999999999999974
Q ss_pred CCCCcEEEEEcCceeEEecCCcccccCCC---ccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIMETPY---KVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~---~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
++|++|+|+++||++.+|+++++.++ +.+|+|+||||+|.||++||+||+|+++|+||+||+||||++ +++||
T Consensus 155 ---~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLg-a~vDp 230 (469)
T PLN02474 155 ---IEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLG-AIVDL 230 (469)
T ss_pred ---cceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccc-cccCH
Confidence 68999999999999999999987665 556999999999999999999999999999999999999965 89999
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
.|+||++.+++++++||++|+.++||+|++|++ +|+++|+||+|+|++++++++ |.++|.++|||||||+|+||+
T Consensus 231 ~~lg~~~~~~~e~~~ev~~Kt~~d~kgG~l~~~--dgk~~lvEysqvp~e~~~~f~---~~~kf~~fNtnn~w~~L~~l~ 305 (469)
T PLN02474 231 KILNHLIQNKNEYCMEVTPKTLADVKGGTLISY--EGKVQLLEIAQVPDEHVNEFK---SIEKFKIFNTNNLWVNLKAIK 305 (469)
T ss_pred HHHHHHHhcCCceEEEEeecCCCCCCccEEEEE--CCEEEEEEEecCCHHHHHhhc---ccccceeeeeeeEEEEHHHHH
Confidence 999999999999999999999999999999987 799999999999999988753 667888889999999999999
Q ss_pred HHhhccccCccceeeecccCCCCCCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCHHHHHHHHHHH
Q 017059 246 QVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRL 325 (378)
Q Consensus 246 ~~~~~~~~~lp~h~a~Kkip~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~~~ 325 (378)
++++. ..+|+|+..+ -..++ ..+-++||+||||+|++++++.+++|+|+ ||+||||+++ |.++|+|+|.+
T Consensus 306 ~~~~~--~~l~~~~I~n-~k~~~-g~kv~q~Et~ig~ai~~f~~~~~v~VpR~-rF~PVK~~~d-----ll~~rsdly~l 375 (469)
T PLN02474 306 RLVEA--DALKMEIIPN-PKEVD-GVKVLQLETAAGAAIRFFDNAIGINVPRS-RFLPVKATSD-----LLLVQSDLYTL 375 (469)
T ss_pred HHhhc--CCCCceeecC-CCCCC-CeeEEEeHHHHHHHHHhCCCceEEEEchh-hccCCCCCCC-----HHHHHHHHHHh
Confidence 99864 3588887421 11234 35678888999999999999999999999 6999999985 99999999999
Q ss_pred HHHHHHHcCCeeccCCCCccCcEEecccceeeCCCchhh
Q 017059 326 HTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAI 364 (378)
Q Consensus 326 ~~~~l~~~g~~~~~~~~~~~~~~eisP~~sy~ge~l~~~ 364 (378)
+++||..+|+...... ..||++|.+++-+|.+..+
T Consensus 376 ~~~~l~~~~~~~~~~~----p~IeL~~~f~~v~~f~~rf 410 (469)
T PLN02474 376 VDGFVIRNKARTNPSN----PSIELGPEFKKVANFLSRF 410 (469)
T ss_pred ccCeEEecCcccCCCC----CcEEECcccccHHhHHHhc
Confidence 9999999998643322 2389999999999887765
No 8
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=1.4e-78 Score=611.41 Aligned_cols=305 Identities=38% Similarity=0.559 Sum_probs=256.4
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+||||||+++|||++|| .+++||||++++||+++++. +++.|||+||||+.||++|++||++ |||
T Consensus 65 GlGTrlG~~~pK~~~~v--~~~~t~ldl~~~qi~~l~~~-----------~~~~iPl~iMtS~~T~~~T~~~l~k--yfg 129 (420)
T PF01704_consen 65 GLGTRLGCSGPKGLIPV--REGKTFLDLIVEQIEALNKK-----------YGVDIPLYIMTSFNTHEDTRKFLEK--YFG 129 (420)
T ss_dssp SBSGCCTESSBGGGSEE--ETTEEHHHHHHHHHHHHHHH-----------HTTT-EEEEEEETTTHHHHHHHHHH--GCG
T ss_pred cccCccCCCCCCcceec--CCcccHHHHHHHHHHHHhcc-----------ccccceEEEecCcccHHHHHHHHHH--hcC
Confidence 39999999999999987 89999999999999998876 5789999999999999999999999 999
Q ss_pred CCCCcEEEEEcCceeEEecCCcccccCCC-----ccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCccccc
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIMETPY-----KVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVA 163 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~-----~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~ 163 (378)
++.+ |++|+|+++||++.+|+++++++. ...|+|+||||+|.||++||+||+|+++|+||+||+|||| |++++
T Consensus 130 ~~~~-v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~ 207 (420)
T PF01704_consen 130 LDVD-VFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVV 207 (420)
T ss_dssp SSCC-EEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT
T ss_pred CCcc-eEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-ccccc
Confidence 9877 999999999999999999997755 2468999999999999999999999999999999999999 77999
Q ss_pred CHHHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHH
Q 017059 164 DPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDF 243 (378)
Q Consensus 164 DP~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~f 243 (378)
||.||||++++++++++|||+|+.|+||+|++|++ +|+++||||+|+|++..+++...++.+.| |+||+||+++|
T Consensus 208 Dp~~lG~~~~~~~~~~~evv~Kt~~dek~Gvl~~~--~G~~~vvEysqip~~~~~~~~~~~~~~~F---ntnNi~~~l~~ 282 (420)
T PF01704_consen 208 DPVFLGYMIEKNADFGMEVVPKTSPDEKGGVLCRY--DGKLQVVEYSQIPKEHMAEFKDIKGFLLF---NTNNIWFSLDF 282 (420)
T ss_dssp -HHHHHHHHHTT-SEEEEEEE-CSTTTSSEEEEEE--TTEEEEEEGGGS-HHGHHHHTSTTTSBEE---EEEEEEEEHHH
T ss_pred CHHHHHHHHhccchhheeeeecCCCCCceeEEEEe--CCccEEEEeccCCHHHHHhhhccccceEE---EeceeeEEHHH
Confidence 99999999999999999999999999999999997 79999999999999988776544444433 88889999999
Q ss_pred HHHHhhccccCccceeeecccCCCCCCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCC--------CCCCCH
Q 017059 244 LNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANG--------SNFDTP 315 (378)
Q Consensus 244 l~~~~~~~~~~lp~h~a~Kkip~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g--------~~~dsp 315 (378)
|+++++....+||||+|.|||||.|...+++|||++|+|.+..+++..+++|+| +||+||||+++ -..|++
T Consensus 283 l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~~q~Et~i~~~i~~f~~~~~v~V~R-~rF~PvKn~~dLl~~~Sd~y~~~~~ 361 (420)
T PF01704_consen 283 LKRLLERDELQLPIHVAKKKIPYVDNGIKVIQFETAIGFAIFQFDNSFAVEVPR-DRFAPVKNTSDLLLVRSDLYDLDDG 361 (420)
T ss_dssp HHHHHHTTTCCS-EEEEEEESSEECTEEEEEEEECGGGGGGGGCTSEEEEEE-G-GG--B-SSHHHHHHHHSTTEEEETT
T ss_pred HHHHHHhccccCccEEcchhcccccCCccEEeehhhhhchHhhccCcEEEEEcH-HHcCCccccCcceeeccceeccccc
Confidence 999998766689999999999999998999999999999988888888889999 79999999976 112455
Q ss_pred HHHHHHHHHHHHHHHHHcCCe
Q 017059 316 DSARLLVLRLHTRWVIAAGGF 336 (378)
Q Consensus 316 ~ta~~~l~~~~~~~l~~~g~~ 336 (378)
.+++......+..|+.++|.+
T Consensus 362 ~~~~~~~~~~~~~p~i~lg~~ 382 (420)
T PF01704_consen 362 TLVRNPLRAFHTRPLIKLGDH 382 (420)
T ss_dssp EEEEHCCHCSSCHHEEEECGG
T ss_pred eeeecccccCCCCCeeccCcc
Confidence 555555555556666666644
No 9
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=5.1e-75 Score=605.52 Aligned_cols=342 Identities=27% Similarity=0.343 Sum_probs=289.8
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+||||||+++|||+||+++++++||||+++|||+++|++|.++.+ ++++.|||+||||+.||++|++||++|+|||
T Consensus 137 GlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~----~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FG 212 (615)
T PLN02830 137 GLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKA----KKGRKIPLVIMTSDDTHARTLKLLERNDYFG 212 (615)
T ss_pred CcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcc----cCCCCceEEEECCcchhHHHHHHHHHCCccC
Confidence 399999999999999999999999999999999999999976543 3689999999999999999999999999999
Q ss_pred CCCCcEEEEEcCceeEEec-CCcccccC--CCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 89 LESDQVTFFQQGTIPCVSK-DGRFIMET--PYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~-~g~~~l~~--~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
++++||+||+|+++||++. +|++++++ +++++|+|+||||+|.||++||+||+|+++|++|+||+||||+|++.+||
T Consensus 213 l~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp 292 (615)
T PLN02830 213 MDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIP 292 (615)
T ss_pred CCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccH
Confidence 9999999999999999985 59999987 88999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEe-cCCCC--eEEEEecCCChhhhhhccC------CCCcccccccccee
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR-GKGGP--LTVVEYSELDPSLASAINQ------ETGRLRFCWSNVCL 236 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~-~~~g~--~~vvEYsel~~~~~~~~~~------~~g~l~f~~gNi~~ 236 (378)
.||||++.++++|++|||+| .|.|++|++|+. +.||+ +.+|||+|++++++...++ .+|...|+ |||||
T Consensus 293 ~flG~~~~~~~d~~~kvv~K-~~~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FP-gNtN~ 370 (615)
T PLN02830 293 AALGVSATKGFDMNSLAVPR-KAKEAIGAIAKLTHKDGREMVINVEYNQLDPLLRATGHPDGDVNDETGYSPFP-GNINQ 370 (615)
T ss_pred HHhHHHHhcCCceEEEEEEC-CCCcccceEEEEecCCCCeeeEEEeecccCHHHHhccCCCcccccccccccCC-CCcee
Confidence 99999999999999999999 689999999985 23676 5789999999987664432 35555565 99999
Q ss_pred eeEeHHHHHHHhhccccCccceeeecccCCCCC----CcceeeehhhhhhccccCC---ceEEEEEecCcceeccccC-C
Q 017059 237 HMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHG----QTVGFKLEQFIFDAFPYAP---STALFEVLREEEFAPVKNA-N 308 (378)
Q Consensus 237 ~~~~l~fl~~~~~~~~~~lp~h~a~Kkip~~~~----~~~~~klE~fifD~~~~~~---~~~~~~V~R~~eFsPvKn~-~ 308 (378)
+|++|+.++++++.....+|.- .++| |.|+ .....++||+|+|+..... +.++...+|+.+|+||||+ +
T Consensus 371 L~v~L~a~~~~l~~~~~~lp~i-vNpK--~~d~~~~v~q~~trle~~mq~f~~~~~~~~~vg~~v~~~~~~f~PVKn~~s 447 (615)
T PLN02830 371 LILKLGPYVKELAKTGGVIEEF-VNPK--YKDATKTAFKSPTRLECMMQDYPKTLPPSAKVGFTVFDNWLAYSPVKNSPA 447 (615)
T ss_pred eEeeHHHHHHHHHhCCCcccee-ccCc--ccCCCCceeecchHHHHHHHHHhhhcCcccccCceecCchheeccccCChH
Confidence 9999999999997644557774 4444 3353 3467899999999976632 2333334556699999999 4
Q ss_pred --------CCCCCCHHHHHHHHHHHHHHHHHHcCCeeccCCCC-ccCc--EEecccceeeCC
Q 017059 309 --------GSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPL-YATG--VEVSPLCSYAGE 359 (378)
Q Consensus 309 --------g~~~dsp~ta~~~l~~~~~~~l~~~g~~~~~~~~~-~~~~--~eisP~~sy~ge 359 (378)
|.+.+|+.+++.|+|+.++..|..+|+.+.+.... ...+ ++..|.|.++++
T Consensus 448 ~a~~k~~~~~~~~~~~s~e~d~y~~~~llL~~s~~~~~~~~~~~~~~~~~~~~~P~I~L~p~ 509 (615)
T PLN02830 448 DGAAKVPEGNPTHSATSGEMAIYGANCLILRKAGADVEEPVEDVVFNGIEVEVGPRIVLKPA 509 (615)
T ss_pred HhhhhcccCCCccCcchhhHHHHHHHHHHHHhcCCccccCccccccCCcccCCCCeEEECch
Confidence 67899999999999999999999999887532211 1122 345588887664
No 10
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9e-73 Score=562.87 Aligned_cols=341 Identities=34% Similarity=0.530 Sum_probs=309.3
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+||||||+++|||+|+|+ +|+||||+++|||+.++++ ++++|||+|||| .|+++|.+||+.++|||
T Consensus 114 GqGtrlG~~gPKgl~~V~--~gks~~dl~~~qIk~ln~~-----------~~~~vP~~iMtS-~nt~~t~s~f~~~~Y~~ 179 (472)
T COG4284 114 GQGTRLGCDGPKGLFEVK--DGKSLFDLQAEQIKYLNRQ-----------YNVDVPLYIMTS-LNTEETDSYFKSNDYFG 179 (472)
T ss_pred CcccccccCCCceeEEec--CCCcHHHHHHHHHHHHHHH-----------hCCCCCEEEEec-CCcHHHHHHHhhhhhcC
Confidence 399999999999999885 8999999999999999987 679999999999 99999999999999999
Q ss_pred CCCCcEEEEEcCcee-EEecCCcccccCCCc-cccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH
Q 017059 89 LESDQVTFFQQGTIP-CVSKDGRFIMETPYK-VAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT 166 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P-~~~~~g~~~l~~~~~-i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~ 166 (378)
+++++|+||+|+.+| +++.+|+.++.+.++ ++|+|+||||+|.+|+.||++++|.++|+||++|+|||| |++++||.
T Consensus 180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~ 258 (472)
T COG4284 180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDN-LGATVDLK 258 (472)
T ss_pred CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccc-cccccCHH
Confidence 999999999999999 667889988876666 999999999999999999999999999999999999999 67999999
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCcccccccc-ceeeeEeHHHHH
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSN-VCLHMFTLDFLN 245 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gN-i~~~~~~l~fl~ 245 (378)
|+|+++.+++++++|++.|+.|+|+||+++.. +|+++|+||+|+|++++.++. +.+.+.|+++| |++|++++++|.
T Consensus 259 ~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~--~g~~rllEysev~~~~~~~~~-s~~~~~~~n~Nni~l~~~~~~~l~ 335 (472)
T COG4284 259 FLGFMAETNYEYLMETTDKTKADEKVGILVTY--DGKLRLLEYSEVPNEHREEFT-SDGKLKYFNTNNIWLHLFSVKFLK 335 (472)
T ss_pred HHHHHHhcCcceeEEEeecccccccceEEEEe--CCceEEEEEecCChhHhhhhc-cccceeeeccccceeehhHHHHHH
Confidence 99999999999999999999999999999987 799999999999999998875 68899999999 999999999997
Q ss_pred HHhhccccCccceeeecccCCCC--C------Ccceeeehh-hh-hhccccC--CceEEEEEecCcceeccccCCCCCCC
Q 017059 246 QVANGLEKDSVYHLAEKKIPSIH--G------QTVGFKLEQ-FI-FDAFPYA--PSTALFEVLREEEFAPVKNANGSNFD 313 (378)
Q Consensus 246 ~~~~~~~~~lp~h~a~Kkip~~~--~------~~~~~klE~-fi-fD~~~~~--~~~~~~~V~R~~eFsPvKn~~g~~~d 313 (378)
+... ..||+|.|.||+|+.+ . .++++|||. || ||+|.+. ++..++.|||..||+|+||-.|...|
T Consensus 336 ~~~~---l~Lpi~~a~Kki~~~~~~~~~~t~i~~~i~kfe~~FI~fDlF~~~s~~~~~~~~vpR~~~f~Plkn~~~~~~~ 412 (472)
T COG4284 336 EAAY---LNLPIHKAIKKIPQLDNIIQLTTAIGKNISKFENEFIPFDLFLYKSDENGGLLLVPRFGEFSPLKNLEGSHFD 412 (472)
T ss_pred hhhc---cCCcchhhhcccCccccceeeccccccchhhccccccceeeeEEEecCCCceEeccccCCCCchhhccCCCCC
Confidence 7654 4799999999999885 1 369999996 99 9999998 89999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCeeccCCCCccCcEEecccceeeCCCchhhhcCcEecCCccc
Q 017059 314 TPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEI 376 (378)
Q Consensus 314 sp~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~eisP~~sy~ge~l~~~~~~~~~~~p~~~ 376 (378)
+++|+..++...-. |++..|.++...+ -.+.++..+|+||++.-...++.|--..+|
T Consensus 413 ~~~~~~~~~~~~~~-~~e~~~~~is~nv-----~~~~~~~lk~~~e~~~l~~~~~s~~e~~ii 469 (472)
T COG4284 413 NVETFTCGIPRIPL-ILELEGLTISGNV-----LFGRNVTLKYASENTSLCIPNKSFLENVII 469 (472)
T ss_pred cHHhhhcccccccc-hhhhccceecCce-----EeeecceeeecCCCceEeccCCeeeeeeeE
Confidence 99999999888754 9999999885432 268889999999999865677766544433
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=2.8e-67 Score=503.07 Aligned_cols=253 Identities=32% Similarity=0.447 Sum_probs=236.8
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+||||||++.||+++||++++|+||||++++||++++.++. +++.|||+||||+.||+.|++||++|+
T Consensus 9 G~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~---------~~~~Ip~~imts~~t~~~t~~~l~~~~--- 76 (266)
T cd04180 9 GLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDL---------YSCKIPEQLMNSKYTHEKTQCYFEKIN--- 76 (266)
T ss_pred CCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhh---------cCCCCCEEEEcCchhHHHHHHHHHHcC---
Confidence 39999999999999999999999999999999999998853 367899999999999999999999988
Q ss_pred CCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
++.++|++|+|+++|+++.+|+..+++++++.|+|+||||+|.+|..+|+|++|+++|++|++|+|+||+|++++||.++
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~l 156 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFI 156 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHH
Confidence 56789999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhcc-----CCCCccccccccceeeeEeHHH
Q 017059 169 GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAIN-----QETGRLRFCWSNVCLHMFTLDF 243 (378)
Q Consensus 169 G~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~-----~~~g~l~f~~gNi~~~~~~l~f 243 (378)
||++.+++++++||++|+.++|++|++|.++ +|++++|||+|+|++++++.. ..++.+.|+++|||||||+|+|
T Consensus 157 G~~~~~~~~~~~kvv~K~~~d~k~G~~~~~~-~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~ 235 (266)
T cd04180 157 GIAIQNRKAINQKVVPKTRNEESGGYRIANI-NGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTNNLINFLVE 235 (266)
T ss_pred HHHHHcCCCEEEEEEECCCCCCeEEEEEEec-CCCEEEEEeccCCHHHHhccccccCcCCCCceeeccceEEEEEEEHHH
Confidence 9999999999999999999999999999872 399999999999999877531 1367889999999999999999
Q ss_pred HHHHhhccccCccceeeecccCCCCCCcceeeehhhhhhccccCCceEEEEEecCcceecccc
Q 017059 244 LNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKN 306 (378)
Q Consensus 244 l~~~~~~~~~~lp~h~a~Kkip~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn 306 (378)
|+++++ |+|++++++.+++|+|++||+||||
T Consensus 236 l~~~~~--------------------------------d~~~~~~~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 236 FKDRVD--------------------------------DIIEFTDDIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred HHHHHH--------------------------------HHHhccCceEEEEeCchhccccCCC
Confidence 998874 9999999999999999999999998
No 12
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-57 Score=443.69 Aligned_cols=289 Identities=19% Similarity=0.243 Sum_probs=261.6
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
++||.|||.+||+++ ++++|.||+++.++||..|++. |.+++||++|+|+.|+++|.++++||.++
T Consensus 112 GlGttmGc~gPKS~i--eVR~g~tFLDL~V~QIe~LN~~-----------Y~~dVPlvLMNSfnTdedT~kil~ky~~~- 177 (498)
T KOG2638|consen 112 GLGTTMGCKGPKSVI--EVRDGLTFLDLTVRQIENLNKT-----------YNVDVPLVLMNSFNTDEDTQKILKKYAGS- 177 (498)
T ss_pred CcCCccccCCCceeE--EEcCCCchhHHHHHHHHHHHhh-----------cCCCCCEEEecccccchHHHHHHHHhcCC-
Confidence 379999999999998 5699999999999999988765 88999999999999999999999998875
Q ss_pred CCCCcEEEEEcCceeEEecCCcccccC----CCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccC
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIMET----PYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVAD 164 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~----~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~D 164 (378)
+.+|.+|.|++.|+++.|..++... ....+|+|+||||+|.+|+.||+||+|+++|+||+||+|+||++ +++|
T Consensus 178 --kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLG-AtvD 254 (498)
T KOG2638|consen 178 --KVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLG-ATVD 254 (498)
T ss_pred --ceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEecccccc-ceee
Confidence 4689999999999999999877642 34589999999999999999999999999999999999999999 5899
Q ss_pred HHHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHH
Q 017059 165 PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFL 244 (378)
Q Consensus 165 P~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl 244 (378)
..+|.+++.+++++.|||+.||.+|.|+|+++.+ +|+++++||+|+|+++.+++. +..+++++ ||||+|++|.++
T Consensus 255 L~ILn~~i~~~~ey~MEvTdKT~aDvKgGtLi~y--~G~lrlLEiaQVP~ehv~eFk-S~kkFkif--NTNNlWinLkav 329 (498)
T KOG2638|consen 255 LNILNHVINNNIEYLMEVTDKTRADVKGGTLIQY--EGKLRLLEIAQVPKEHVDEFK-SIKKFKIF--NTNNLWINLKAV 329 (498)
T ss_pred HHHHHHHhcCCCceEEEecccchhhcccceEEee--cCEEEEEEeccCChhHhhhhc-cceeEEEe--ccCCeEEehHHH
Confidence 9999999999999999999999999999999998 799999999999999998864 57777776 999999999999
Q ss_pred HHHhhccccCccceeeecccCCCCCCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCHHHHHHHHHH
Q 017059 245 NQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLR 324 (378)
Q Consensus 245 ~~~~~~~~~~lp~h~a~Kkip~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~~ 324 (378)
++++++..-.++.+...|++. ...+.++||+.+.+++++++++.++.|+|+ ||.|||++++ ....+.+||.
T Consensus 330 Krlve~~~l~meIi~N~kti~---~~~~viQleTa~GaaIk~F~na~gv~VpRs-RFlPVKt~sD-----LlLv~S~Ly~ 400 (498)
T KOG2638|consen 330 KKLVEENALNMEIIVNPKTID---RGIEVIQLETAAGAAIKFFDNAIGVNVPRS-RFLPVKTCSD-----LLLVMSNLYD 400 (498)
T ss_pred HHHhhcCcccceeecChhhcc---CCceEEEEhhhhhHHHHhCCCceeeecccc-cccccccccc-----ceeeecceee
Confidence 999987555677777777763 357899999999999999999999999998 9999999988 6777777877
Q ss_pred HHHH
Q 017059 325 LHTR 328 (378)
Q Consensus 325 ~~~~ 328 (378)
+.+.
T Consensus 401 ld~G 404 (498)
T KOG2638|consen 401 LDNG 404 (498)
T ss_pred ccCC
Confidence 6433
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=97.46 E-value=0.0074 Score=61.20 Aligned_cols=261 Identities=20% Similarity=0.210 Sum_probs=169.2
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
++||||-++-||-+=|+ .||+.++.-++....+.- ..+ ++.. ..-.+..++-+.+.
T Consensus 11 GkGTRMkS~lPKVLH~v---aGkpMl~hVi~~a~~l~~--------------~~i--~vVv-Gh~ae~V~~~~~~~---- 66 (460)
T COG1207 11 GKGTRMKSDLPKVLHPV---AGKPMLEHVIDAARALGP--------------DDI--VVVV-GHGAEQVREALAER---- 66 (460)
T ss_pred CCCccccCCCcccchhc---cCccHHHHHHHHHhhcCc--------------ceE--EEEE-cCCHHHHHHHhccc----
Confidence 49999999999988766 799999888877654421 122 2222 23445666666642
Q ss_pred CCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCce-EEEEEecCCCcccccCHH-
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIK-YIDCYGVDNALVRVADPT- 166 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~-yi~v~~vDN~l~~~~DP~- 166 (378)
.++.|+.|.. |-|.|.-..+. .+.| ..+.+ .+.|.+-|-+|. ..+.+
T Consensus 67 ---~~v~~v~Q~e---------------------qlGTgHAV~~a-----~~~l-~~~~~g~vLVl~GD~PLi-t~~TL~ 115 (460)
T COG1207 67 ---DDVEFVLQEE---------------------QLGTGHAVLQA-----LPAL-ADDYDGDVLVLYGDVPLI-TAETLE 115 (460)
T ss_pred ---cCceEEEecc---------------------cCChHHHHHhh-----hhhh-hcCCCCcEEEEeCCcccC-CHHHHH
Confidence 2578888872 34555444333 3333 45666 788889999994 44443
Q ss_pred -HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCC-eEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHH
Q 017059 167 -FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGP-LTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFL 244 (378)
Q Consensus 167 -~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~-~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl 244 (378)
++.++...+..+..=...-.+|. .-|-|++.+ +|+ ..+||.-+-+++..+- .. -|+..+.|+-.+|
T Consensus 116 ~L~~~~~~~~~~~tvLt~~~~dP~-GYGRIvr~~-~g~V~~IVE~KDA~~eek~I--------~e--iNtGiy~f~~~~L 183 (460)
T COG1207 116 ELLAAHPAHGAAATVLTAELDDPT-GYGRIVRDG-NGEVTAIVEEKDASEEEKQI--------KE--INTGIYAFDGAAL 183 (460)
T ss_pred HHHHhhhhcCCceEEEEEEcCCCC-CcceEEEcC-CCcEEEEEEcCCCCHHHhcC--------cE--EeeeEEEEcHHHH
Confidence 66777766777764444444444 346677653 454 6789999888876532 22 3888899999999
Q ss_pred HHHhhccccCccceeeecccCCCCCCcceeeehhhhhhccccCC----ceEEEEEecCcceeccccCCCCCCCCHHHHHH
Q 017059 245 NQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAP----STALFEVLREEEFAPVKNANGSNFDTPDSARL 320 (378)
Q Consensus 245 ~~~~~~~~~~lp~h~a~Kkip~~~~~~~~~klE~fifD~~~~~~----~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~ 320 (378)
.+.+.... .|-.|=|-.+-|++.++. ....+.++..+|+.-|.|.-. ...+++
T Consensus 184 ~~~L~~l~------------------nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~q-----La~~e~ 240 (460)
T COG1207 184 LRALPKLS------------------NNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQ-----LAEAER 240 (460)
T ss_pred HHHHHHhc------------------cccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHH-----HHHHHH
Confidence 88876431 233445777788888764 455688887889988866644 667777
Q ss_pred HHHHHHHHHHHHcCCeeccCCCCc-------cCcEEecccceeeCC
Q 017059 321 LVLRLHTRWVIAAGGFLTHSVPLY-------ATGVEVSPLCSYAGE 359 (378)
Q Consensus 321 ~l~~~~~~~l~~~g~~~~~~~~~~-------~~~~eisP~~sy~ge 359 (378)
-|-++-.+.+..+|+.+.+....+ -..++|.|-+...|.
T Consensus 241 ~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~ 286 (460)
T COG1207 241 IMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGN 286 (460)
T ss_pred HHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeee
Confidence 777777777788999875321111 123677777766664
No 14
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.40 E-value=0.037 Score=56.81 Aligned_cols=171 Identities=20% Similarity=0.296 Sum_probs=94.4
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+|||||.+.||.|+|+ .||++++..++++.+. +.. .++|.|+.. .+...+++..
T Consensus 15 ~gtR~~~~~pK~l~~i---~gkpli~~~l~~l~~~---------------~~~-~iivv~~~~-~~~i~~~~~~------ 68 (456)
T PRK14356 15 KGTRMHSDKPKVLQTL---LGEPMLRFVYRALRPL---------------FGD-NVWTVVGHR-ADMVRAAFPD------ 68 (456)
T ss_pred CCccCCCCCCceeccc---CCCcHHHHHHHHHHhc---------------CCC-cEEEEECCC-HHHHHHhccc------
Confidence 8999998899999987 6899999998877421 111 355666643 4445555432
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
.++.+..|+ .|.|.|+ ++.+ ++.|...+-+++.+.+.|.++. ++..+
T Consensus 69 --~~~~~v~~~---------------------~~~Gt~~al~~a------~~~l~~~~~d~vlv~~gD~P~i---~~~~i 116 (456)
T PRK14356 69 --EDARFVLQE---------------------QQLGTGHALQCA------WPSLTAAGLDRVLVVNGDTPLV---TTDTI 116 (456)
T ss_pred --cCceEEEcC---------------------CCCCcHHHHHHH------HHHHhhcCCCcEEEEeCCcccC---CHHHH
Confidence 122222221 1334343 3333 3445444678999999999874 33333
Q ss_pred HHHHh--cCCcEEEEEecccCCCccceeEEEecCCCCe-EEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 169 GYFID--KGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 169 G~~~~--~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~-~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
-.+.+ .+.+..+-+.+-..+ ..-|++.. ++|+. .++|-..+++..... . ....|+++..|+-++++
T Consensus 117 ~~li~~~~~~~~~l~~~~~~~~-~~~g~v~~--~~g~V~~~~ek~~~~~~~~~~---~-----~~~~~~GiY~f~~~~l~ 185 (456)
T PRK14356 117 DDFLKEAAGADLAFMTLTLPDP-GAYGRVVR--RNGHVAAIVEAKDYDEALHGP---E-----TGEVNAGIYYLRLDAVE 185 (456)
T ss_pred HHHHHHHhcCCEEEEEEEcCCC-CCceEEEE--cCCeEEEEEECCCCChHHhhh---h-----cCeEEEEEEEEEHHHHH
Confidence 22222 244544333332233 34677655 25643 234433333321111 0 11247788999999887
Q ss_pred HHhh
Q 017059 246 QVAN 249 (378)
Q Consensus 246 ~~~~ 249 (378)
++..
T Consensus 186 ~ll~ 189 (456)
T PRK14356 186 SLLP 189 (456)
T ss_pred HHHH
Confidence 7654
No 15
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.30 E-value=0.062 Score=54.64 Aligned_cols=168 Identities=20% Similarity=0.249 Sum_probs=102.3
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+||||+...||.++|+ .|+++++..++++++. . -.++|+++. ..+.+.+++.+. ++
T Consensus 12 ~GtRl~~~~pK~Llpi---~gkPli~~~i~~l~~~----------------~-~~i~Ivv~~-~~~~i~~~~~~~--~~- 67 (430)
T PRK14359 12 KGTRMKSSLPKVLHTI---CGKPMLFYILKEAFAI----------------S-DDVHVVLHH-QKERIKEAVLEY--FP- 67 (430)
T ss_pred CCccCCCCCCceeCEE---CCccHHHHHHHHHHHc----------------C-CcEEEEECC-CHHHHHHHHHhc--CC-
Confidence 8999999999999988 6899999999988542 0 126667765 467788888753 21
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHhH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLG 169 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~lG 169 (378)
.+.+..|+ ...+.|.|+....+ +..-+++.+.+.|+++. ++..+-
T Consensus 68 ---~v~~~~~~-------------------~~~~~gt~~al~~~----------~~~~d~vlv~~gD~p~~---~~~~l~ 112 (430)
T PRK14359 68 ---GVIFHTQD-------------------LENYPGTGGALMGI----------EPKHERVLILNGDMPLV---EKDELE 112 (430)
T ss_pred ---ceEEEEec-------------------CccCCCcHHHHhhc----------ccCCCeEEEEECCccCC---CHHHHH
Confidence 34444432 11234555544321 11257899999999873 567777
Q ss_pred HHHhcCCcEEEEEecccCCCccceeEEEecCCCCe-EEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHHh
Q 017059 170 YFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVA 248 (378)
Q Consensus 170 ~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~-~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~~ 248 (378)
.+.+.+.++.+-+.+...|. .-|++... +|+. .++|....+.+ + ......|++.++|+-++++++.
T Consensus 113 ~l~~~~~~~~v~~~~~~~~~-~~g~v~~d--~g~v~~i~e~~~~~~~---~-------~~~~~~~~Giyif~~~~l~~~~ 179 (430)
T PRK14359 113 KLLENDADIVMSVFHLADPK-GYGRVVIE--NGQVKKIVEQKDANEE---E-------LKIKSVNAGVYLFDRKLLEEYL 179 (430)
T ss_pred HHHhCCCCEEEEEEEcCCCc-cCcEEEEc--CCeEEEEEECCCCCcc---c-------ccceEEEeEEEEEEHHHHHHHH
Confidence 77777777655444433333 35665442 4532 23443322111 0 1112357778999999998765
Q ss_pred h
Q 017059 249 N 249 (378)
Q Consensus 249 ~ 249 (378)
.
T Consensus 180 ~ 180 (430)
T PRK14359 180 P 180 (430)
T ss_pred H
Confidence 4
No 16
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=97.19 E-value=0.036 Score=51.06 Aligned_cols=174 Identities=18% Similarity=0.170 Sum_probs=97.3
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+.||||+...||.++|+ .|+++++..++++... ++ -.++|.|+.. ++.+.+++.+ +
T Consensus 7 G~g~R~~~~~pK~l~~v---~gkpli~~~i~~l~~~---------------~i-~~i~iv~~~~-~~~i~~~~~~---~- 62 (229)
T cd02540 7 GKGTRMKSDLPKVLHPL---AGKPMLEHVLDAARAL---------------GP-DRIVVVVGHG-AEQVKKALAN---P- 62 (229)
T ss_pred CCCccCCCCCChhccee---CCccHHHHHHHHHHhC---------------CC-CeEEEEECCC-HHHHHHHhCC---C-
Confidence 37999998789999988 5899999888877431 22 2466677655 6777777764 2
Q ss_pred CCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH-
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT- 166 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~- 166 (378)
.+.++.|. .+.|.++ ++.++ +.+ +++-+++.+.+.|+++....|-.
T Consensus 63 ----~~~~~~~~---------------------~~~g~~~ai~~a~------~~~-~~~~~~vli~~~D~p~~~~~~i~~ 110 (229)
T cd02540 63 ----NVEFVLQE---------------------EQLGTGHAVKQAL------PAL-KDFEGDVLVLYGDVPLITPETLQR 110 (229)
T ss_pred ----CcEEEECC---------------------CCCCCHHHHHHHH------Hhh-ccCCCeEEEEeCCccccCHHHHHH
Confidence 23343332 1234333 33333 223 22468899999999863211111
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
++-.+.+.++++.+-+.+...| ..-|.+... .+|+ |+++.+=+.....+ + .....|++..+|+.+.+.+
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~-~~~~--v~~~~ek~~~~~~~--~-----~~~~~~~giy~~~~~~~~~ 179 (229)
T cd02540 111 LLEAHREAGADVTVLTAELEDP-TGYGRIIRD-GNGK--VLRIVEEKDATEEE--K-----AIREVNAGIYAFDAEFLFE 179 (229)
T ss_pred HHHHHHhcCCcEEEEEEEcCCC-CCccEEEEc-CCCC--EEEEEECCCCChHH--H-----hhceEEeEEEEEEHHHHHH
Confidence 2344444567766555554444 345665443 2454 44443322110000 0 0123578889999887766
Q ss_pred Hhh
Q 017059 247 VAN 249 (378)
Q Consensus 247 ~~~ 249 (378)
+++
T Consensus 180 ~l~ 182 (229)
T cd02540 180 ALP 182 (229)
T ss_pred HHH
Confidence 554
No 17
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.10 E-value=0.047 Score=55.96 Aligned_cols=168 Identities=21% Similarity=0.202 Sum_probs=98.1
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+||||+...||-++|+ .|+++++..++.+... .. .++|.|+.. .+.+.+++.+
T Consensus 10 ~gtRl~~~~pK~l~~v---~gkpli~~~l~~l~~~---------------~~--~i~vv~~~~-~~~i~~~~~~------ 62 (448)
T PRK14357 10 KGTRMKSKIPKVLHKI---SGKPMINWVIDTAKKV---------------AQ--KVGVVLGHE-AELVKKLLPE------ 62 (448)
T ss_pred CCccCCCCCCceeeEE---CCeeHHHHHHHHHHhc---------------CC--cEEEEeCCC-HHHHHHhccc------
Confidence 7999998899999988 5889999998876531 11 255666543 3455555431
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccC-HHH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVAD-PTF 167 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~D-P~~ 167 (378)
.+.++.|+ .|.|.++ ++.++ +.+. .-+++++.+.|+++....| -.+
T Consensus 63 ---~~~~~~~~---------------------~~~g~~~ai~~a~------~~l~--~~~~vlv~~gD~p~i~~~~i~~l 110 (448)
T PRK14357 63 ---WVKIFLQE---------------------EQLGTAHAVMCAR------DFIE--PGDDLLILYGDVPLISENTLKRL 110 (448)
T ss_pred ---ccEEEecC---------------------CCCChHHHHHHHH------HhcC--cCCeEEEEeCCcccCCHHHHHHH
Confidence 23333332 1224333 33333 2221 1378999999998743333 225
Q ss_pred hHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHH
Q 017059 168 LGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQV 247 (378)
Q Consensus 168 lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~ 247 (378)
+-.+.+.++++.+-+.+-..| ..-|++... +|+...+|...-++... ..+..|+...+|+-+.|.++
T Consensus 111 ~~~~~~~~~d~ti~~~~~~~~-~~~g~v~~d--~g~v~~~e~~~~~~~~~----------~~~~~~~GiYv~~~~~l~~~ 177 (448)
T PRK14357 111 IEEHNRKGADVTILVADLEDP-TGYGRIIRD--GGKYRIVEDKDAPEEEK----------KIKEINTGIYVFSGDFLLEV 177 (448)
T ss_pred HHHHHhcCCeEEEEEEEcCCC-CCcEEEEEc--CCeEEEEECCCCChHHh----------cCcEEEeEEEEEEHHHHHHH
Confidence 666666788876555443333 345776443 56666666543222110 01235888899999988776
Q ss_pred hh
Q 017059 248 AN 249 (378)
Q Consensus 248 ~~ 249 (378)
+.
T Consensus 178 ~~ 179 (448)
T PRK14357 178 LP 179 (448)
T ss_pred HH
Confidence 54
No 18
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=97.06 E-value=0.033 Score=51.70 Aligned_cols=168 Identities=21% Similarity=0.307 Sum_probs=96.6
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
+||||+ ...||.++|+ .|+++++..++.+... ++. .++|.|+. ..+.+.+++++...
T Consensus 10 ~g~Rl~plt~~~pK~l~~i---~g~~li~~~l~~l~~~---------------~~~-~i~vv~~~-~~~~~~~~~~~~~~ 69 (236)
T cd04189 10 KGTRLRPLTYTRPKQLIPV---AGKPIIQYAIEDLREA---------------GIE-DIGIVVGP-TGEEIKEALGDGSR 69 (236)
T ss_pred ccccccccccCCCceeeEE---CCcchHHHHHHHHHHC---------------CCC-EEEEEcCC-CHHHHHHHhcchhh
Confidence 799997 5899999998 5889999988887421 222 46788877 77788888887544
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT 166 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~ 166 (378)
+++ ++.+..|. .|-|.|+....- ++.+. +-.+ .+.+.|.+.-....+
T Consensus 70 ~~~---~i~~~~~~---------------------~~~g~~~sl~~a-----~~~i~--~~~~-li~~~D~~~~~~~~~- 116 (236)
T cd04189 70 FGV---RITYILQE---------------------EPLGLAHAVLAA-----RDFLG--DEPF-VVYLGDNLIQEGISP- 116 (236)
T ss_pred cCC---eEEEEECC---------------------CCCChHHHHHHH-----HHhcC--CCCE-EEEECCeecCcCHHH-
Confidence 553 33333331 234544432211 12221 2234 456678876322222
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
++-.+...+.++.+-+.+-..+ .+-|++... +| .|+++.|-|... . . ...|+++++|+-++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~d--~~--~v~~~~ek~~~~-------~--~--~~~~~Giy~~~~~~~~~ 180 (236)
T cd04189 117 LVRDFLEEDADASILLAEVEDP-RRFGVAVVD--DG--RIVRLVEKPKEP-------P--S--NLALVGVYAFTPAIFDA 180 (236)
T ss_pred HHHHHHhcCCceEEEEEECCCc-ccceEEEEc--CC--eEEEEEECCCCC-------C--C--CEEEEEEEEeCHHHHHH
Confidence 4445566777776655443322 345776543 34 565655433211 0 1 13588889999777654
No 19
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=96.96 E-value=0.03 Score=51.70 Aligned_cols=121 Identities=13% Similarity=0.142 Sum_probs=76.2
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||+ ...||.++|+ .|+++++..++.+.+. ++. -++|.|.. ..+.+++++++..+
T Consensus 10 ~g~Rl~plt~~~pK~llpi---~g~piI~~~l~~l~~~---------------Gi~-~I~iv~~~-~~~~i~~~l~~~~~ 69 (217)
T cd04197 10 FNRRFRPLTKEKPRCLLPL---ANVPLIDYTLEFLALN---------------GVE-EVFVFCCS-HSDQIKEYIEKSKW 69 (217)
T ss_pred CcccccccccCCCceeeEE---CCEehHHHHHHHHHHC---------------CCC-eEEEEeCC-CHHHHHHHHhhccc
Confidence 799998 5899999998 5789999988887531 222 36777775 67889999998665
Q ss_pred CCCCCC--cEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccC
Q 017059 87 FGLESD--QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVAD 164 (378)
Q Consensus 87 Fgl~~~--~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~D 164 (378)
+++... .+.+..| ..+.|-|+....+...+.+ .+.+.+.+.|++. ..|
T Consensus 70 ~~~~~~~~~i~~~~~---------------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~--~~d 119 (217)
T cd04197 70 SKPKSSLMIVIIIMS---------------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDVVS--NID 119 (217)
T ss_pred cccccCcceEEEEeC---------------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCeee--ccC
Confidence 554321 1121111 0134456666554433322 2456788999876 345
Q ss_pred H-HHhHHHHhc-----CCcEEE
Q 017059 165 P-TFLGYFIDK-----GVSAGA 180 (378)
Q Consensus 165 P-~~lG~~~~~-----~~~~~~ 180 (378)
. .++-++.+. ++++.+
T Consensus 120 l~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 120 LKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred HHHHHHHHHHhhccccCceEEE
Confidence 4 367777763 666654
No 20
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=96.89 E-value=0.038 Score=53.77 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=102.5
Q ss_pred cccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 9 IQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 9 ~qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
+.||||.- ..||.++|+ -+|.+++..++.+.. .++. .++|.|.+...+..+++|....
T Consensus 8 G~GtRL~plT~~~pK~Llpv---~gkPmI~~~L~~l~~---------------aGi~-~I~iv~~~~~~~~~~~~lg~g~ 68 (286)
T TIGR01207 8 GSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLML---------------AGIR-DILIISTPQDTPRFQQLLGDGS 68 (286)
T ss_pred CCCccCCcccCCCCceeeEE---CCEEhHHHHHHHHHH---------------CCCC-EEEEEecCCcHHHHHHHhcccc
Confidence 38999974 889999998 578999988887742 1222 4666777777777888888766
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccC-
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVAD- 164 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~D- 164 (378)
.+|+ ++.+..|+ .|-|.|+-+.... +.+ +-+-+.+...||++. ..|
T Consensus 69 ~~g~---~i~~~~q~---------------------~~~Gta~al~~a~-----~~l---~~~~~~li~gD~i~~-~~~l 115 (286)
T TIGR01207 69 QWGV---NLSYAVQP---------------------SPDGLAQAFIIGE-----DFI---GGDPSALVLGDNIFY-GHDL 115 (286)
T ss_pred ccCc---eEEEEEcc---------------------CCCCHHHHHHHHH-----HHh---CCCCEEEEECCEecc-ccCH
Confidence 6775 45444442 4556666544332 222 223345667999874 344
Q ss_pred HHHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHH
Q 017059 165 PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFL 244 (378)
Q Consensus 165 P~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl 244 (378)
..++-.+...+.++.+-+.+..+ .+.-|++... .+| .|+++.|=|.. + .+. ..|+...+|+-+.+
T Consensus 116 ~~ll~~~~~~~~~~ti~~~~v~~-p~~yGvv~~d-~~g--~V~~i~EKp~~------~---~s~--~~~~GiYi~~~~i~ 180 (286)
T TIGR01207 116 SDLLKRAAARESGATVFAYQVSD-PERYGVVEFD-SNG--RAISIEEKPAQ------P---KSN--YAVTGLYFYDNRVV 180 (286)
T ss_pred HHHHHHHHhcCCCcEEEEEEccC-HHHCceEEEC-CCC--eEEEEEECCCC------C---CCC--EEEEEEEEEchHHH
Confidence 34566666666665443333222 3567888664 245 45555443321 1 112 36888899997764
Q ss_pred H
Q 017059 245 N 245 (378)
Q Consensus 245 ~ 245 (378)
+
T Consensus 181 ~ 181 (286)
T TIGR01207 181 E 181 (286)
T ss_pred H
Confidence 4
No 21
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=96.85 E-value=0.036 Score=50.38 Aligned_cols=168 Identities=20% Similarity=0.295 Sum_probs=100.0
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||+ ...||.++|+ .|+++++..++.+... ++ -.++|.|.. ..+.+.+++.+...
T Consensus 8 ~g~R~~~~t~~~pK~ll~v---~g~pli~~~l~~l~~~---------------g~-~~i~vv~~~-~~~~i~~~~~~~~~ 67 (217)
T cd04181 8 KGTRLRPLTDTRPKPLLPI---AGKPILEYIIERLARA---------------GI-DEIILVVGY-LGEQIEEYFGDGSK 67 (217)
T ss_pred ccccccccccCCCccccEE---CCeeHHHHHHHHHHHC---------------CC-CEEEEEecc-CHHHHHHHHcChhh
Confidence 799998 3689999998 6889999999887532 11 136677765 45678888876443
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT 166 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~ 166 (378)
+|+ .+.+..|. .|.|.++-.... ++.+ .-+++.|.+.|++. ....-.
T Consensus 68 ~~~---~i~~~~~~---------------------~~~g~~~al~~~-----~~~~---~~~~~lv~~~D~~~-~~~~~~ 114 (217)
T cd04181 68 FGV---NIEYVVQE---------------------EPLGTAGAVRNA-----EDFL---GDDDFLVVNGDVLT-DLDLSE 114 (217)
T ss_pred cCc---eEEEEeCC---------------------CCCccHHHHHHh-----hhhc---CCCCEEEEECCeec-CcCHHH
Confidence 332 23332221 234554433322 2222 45789999999976 332233
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
++-++..+++++.+-+.+.. ....-|++... .+| .|+++.|-|+... . ...|++.++|+-+.++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~d-~~~--~v~~~~ek~~~~~---------~--~~~~~Giy~~~~~~~~ 178 (217)
T cd04181 115 LLRFHREKGADATIAVKEVE-DPSRYGVVELD-DDG--RVTRFVEKPTLPE---------S--NLANAGIYIFEPEILD 178 (217)
T ss_pred HHHHHHhcCCCEEEEEEEcC-CCCcceEEEEc-CCC--cEEEEEECCCCCC---------C--CEEEEEEEEECHHHHH
Confidence 56677778888765554432 44556776553 234 4556655332210 0 1257778999987773
No 22
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=96.76 E-value=0.071 Score=52.11 Aligned_cols=170 Identities=16% Similarity=0.202 Sum_probs=103.3
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||.- ..||-++|+ -+|.+++..++.+... ++. -++|.+.+.-.+..+++|.....
T Consensus 13 ~GtRL~PlT~~~pK~Llpv---~gkPmI~~~l~~l~~a---------------Gi~-~I~ii~~~~~~~~~~~~l~~g~~ 73 (292)
T PRK15480 13 SGTRLYPVTMAVSKQLLPI---YDKPMIYYPLSTLMLA---------------GIR-DILIISTPQDTPRFQQLLGDGSQ 73 (292)
T ss_pred cccccCcccCCCCceEeEE---CCEEHHHHHHHHHHHC---------------CCC-EEEEEecCCchHHHHHHHcCccc
Confidence 8999985 889999998 6789999988877431 232 36666666656678888887666
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP- 165 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP- 165 (378)
+|+ ++.+..|+ .|.|.|+-+.... .+.. +-+ +.+..-||++. ..|-
T Consensus 74 ~g~---~i~y~~q~---------------------~~~Gta~Al~~a~------~~i~-~~~-~~lv~gD~i~~-~~~l~ 120 (292)
T PRK15480 74 WGL---NLQYKVQP---------------------SPDGLAQAFIIGE------EFIG-GDD-CALVLGDNIFY-GHDLP 120 (292)
T ss_pred cCc---eeEEEECC---------------------CCCCHHHHHHHHH------HHhC-CCC-EEEEECCeeee-ccCHH
Confidence 775 34444443 2667777655432 2221 223 45567999874 2343
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
.++-.+..++.++.+-+.+-.+ .+.-|++... .+|+ |+++.|=|.. + .+ ..+|+..++|+-+.++
T Consensus 121 ~ll~~~~~~~~~~tv~~~~v~~-p~~yGvv~~d-~~g~--v~~i~EKP~~------p---~s--~~a~~GiY~~~~~v~~ 185 (292)
T PRK15480 121 KLMEAAVNKESGATVFAYHVND-PERYGVVEFD-QNGT--AISLEEKPLQ------P---KS--NYAVTGLYFYDNDVVE 185 (292)
T ss_pred HHHHHHHhCCCCeEEEEEEcCC-cccCcEEEEC-CCCc--EEEEEECCCC------C---CC--CEEEEEEEEEChHHHH
Confidence 4677666666665543333222 3567887654 2453 4455443321 1 11 2368888999987665
Q ss_pred H
Q 017059 246 Q 246 (378)
Q Consensus 246 ~ 246 (378)
.
T Consensus 186 ~ 186 (292)
T PRK15480 186 M 186 (292)
T ss_pred H
Confidence 4
No 23
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=96.75 E-value=0.011 Score=55.26 Aligned_cols=177 Identities=17% Similarity=0.219 Sum_probs=110.8
Q ss_pred cccccCC---CCCCCcceeccCCCCC-ChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhc
Q 017059 9 IQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGH 84 (378)
Q Consensus 9 ~qGtRLG---~~~pKg~~~i~l~~~k-sllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~ 84 (378)
+.||||. .+.||.++|+ -|+ ++++..++++... +..= +++.+.....+...+++++.
T Consensus 8 G~GtRl~plt~~~pK~ll~i---~g~~pli~~~l~~l~~~---------------g~~~-ii~V~~~~~~~~i~~~~~~~ 68 (248)
T PF00483_consen 8 GKGTRLRPLTDTIPKPLLPI---GGKYPLIDYVLENLANA---------------GIKE-IIVVVNGYKEEQIEEHLGSG 68 (248)
T ss_dssp SCCGGGTTTTTTSSGGGSEE---TTEEEHHHHHHHHHHHT---------------TCSE-EEEEEETTTHHHHHHHHTTS
T ss_pred CCCccCchhhhcccccccee---cCCCcchhhhhhhhccc---------------CCce-EEEEEeeccccccccccccc
Confidence 3899997 6889999988 466 9999999888542 2332 45555555677899999986
Q ss_pred CCCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCC-ceEEEEEecCCCccccc
Q 017059 85 KYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRG-IKYIDCYGVDNALVRVA 163 (378)
Q Consensus 85 ~~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~G-i~yi~v~~vDN~l~~~~ 163 (378)
..++ -+|.+..|+ .|.|.|+..... .+.+.... -+++.|.+.|++.- .
T Consensus 69 ~~~~---~~i~~i~~~---------------------~~~Gta~al~~a-----~~~i~~~~~~~~~lv~~gD~i~~-~- 117 (248)
T PF00483_consen 69 YKFG---VKIEYIVQP---------------------EPLGTAGALLQA-----LDFIEEEDDDEDFLVLNGDIIFD-D- 117 (248)
T ss_dssp GGGT---EEEEEEEES---------------------SSSCHHHHHHHT-----HHHHTTSEE-SEEEEETTEEEES-T-
T ss_pred cccc---ccceeeecc---------------------cccchhHHHHHH-----HHHhhhccccceEEEEecccccc-c-
Confidence 6555 245555544 111555554433 33443333 35799999999873 3
Q ss_pred C-HHHhHHHHhcCCcE--EEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEe
Q 017059 164 D-PTFLGYFIDKGVSA--GAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFT 240 (378)
Q Consensus 164 D-P~~lG~~~~~~~~~--~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~ 240 (378)
| ..++-.+...+.++ .+...+ +....+-|++... .+| .|++.-|=|..... ....|+.+.+|+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~g~v~~d-~~~--~V~~~~EKP~~~~~----------~~~~~~G~Y~~~ 183 (248)
T PF00483_consen 118 DLQDMLEFHRESNADGTVTLLVVP-VEDPSRYGVVEVD-EDG--RVIRIVEKPDNPNA----------SNLINTGIYIFK 183 (248)
T ss_dssp THHHHHHHHHHHSSCESEEEEEEE-SSGGGGSEEEEEE-TTS--EEEEEEESCSSHSH----------SSEEEEEEEEEE
T ss_pred hhhhHHHhhhcccccccccccccc-ccccccceeeeec-cce--eEEEEeccCccccc----------ceeccCceEEEc
Confidence 4 34788888888744 333333 3345566777665 234 56666554442210 123577889999
Q ss_pred HHHHHHHhh
Q 017059 241 LDFLNQVAN 249 (378)
Q Consensus 241 l~fl~~~~~ 249 (378)
-+.+..+++
T Consensus 184 ~~~~~~~~~ 192 (248)
T PF00483_consen 184 PEIFDFLLE 192 (248)
T ss_dssp THHHHHHHH
T ss_pred chHHHHHhh
Confidence 998877753
No 24
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.74 E-value=0.22 Score=50.97 Aligned_cols=174 Identities=18% Similarity=0.164 Sum_probs=94.1
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.|||||.+.||.++|+ .|+++++..++++... +. ..++|.+... .+.+.++++++.
T Consensus 11 ~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~~---------------g~-~~iivvv~~~-~~~i~~~~~~~~---- 66 (450)
T PRK14360 11 KGTRMKSSLPKVLHPL---GGKSLVERVLDSCEEL---------------KP-DRRLVIVGHQ-AEEVEQSLAHLP---- 66 (450)
T ss_pred CCccCCCCCChhcCEE---CChhHHHHHHHHHHhC---------------CC-CeEEEEECCC-HHHHHHHhcccC----
Confidence 7999998899999988 6889999998887531 12 2355556543 345666665321
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-HHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP-TFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP-~~l 168 (378)
.+.+..|. .+.|.++-+... ++.+.. .-+++.|...|.++....+- .++
T Consensus 67 ---~i~~v~~~---------------------~~~G~~~sv~~~-----~~~l~~-~~~~vlV~~~D~P~i~~~~l~~ll 116 (450)
T PRK14360 67 ---GLEFVEQQ---------------------PQLGTGHAVQQL-----LPVLKG-FEGDLLVLNGDVPLLRPETLEALL 116 (450)
T ss_pred ---CeEEEEeC---------------------CcCCcHHHHHHH-----HHHhhc-cCCcEEEEeCCccccCHHHHHHHH
Confidence 23333221 134544433222 223321 23467889999987422111 134
Q ss_pred HHHHhcCCcEEEEEecccCCCccceeEEEecCCCCe-EEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHH
Q 017059 169 GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQV 247 (378)
Q Consensus 169 G~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~-~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~ 247 (378)
-.+...++++.+-+.+...|. .-|.+.. +++|+. .++|...+.+... .+ . ..|+..++|+-+.+.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-d~~g~v~~~~ek~~~~~~~~------~~--~--~~~~Giy~f~~~~l~~~ 184 (450)
T PRK14360 117 NTHRSSNADVTLLTARLPNPK-GYGRVFC-DGNNLVEQIVEDRDCTPAQR------QN--N--RINAGIYCFNWPALAEV 184 (450)
T ss_pred HHHHhcCCcEEEEEEecCCCC-CccEEEE-CCCCCEEEEEECCCCChhHh------cC--c--EEEEEEEEEEHHHHHHH
Confidence 445556666654333333332 3466543 235542 3344433222110 11 1 25777899999888776
Q ss_pred hh
Q 017059 248 AN 249 (378)
Q Consensus 248 ~~ 249 (378)
++
T Consensus 185 ~~ 186 (450)
T PRK14360 185 LP 186 (450)
T ss_pred Hh
Confidence 64
No 25
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=96.69 E-value=0.064 Score=48.83 Aligned_cols=170 Identities=18% Similarity=0.241 Sum_probs=96.2
Q ss_pred cccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 9 IQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 9 ~qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
++||||+- ..||.++|+ .|+++++..++.+... +.. .++|.|+ ...+.+.+++....
T Consensus 7 G~g~R~~~~t~~~pK~ll~i---~g~pli~~~l~~l~~~---------------g~~-~v~vv~~-~~~~~i~~~~~~~~ 66 (223)
T cd06915 7 GLGTRLRSVVKDLPKPLAPV---AGRPFLEYLLEYLARQ---------------GIS-RIVLSVG-YLAEQIEEYFGDGY 66 (223)
T ss_pred CcccccCcccCCCCccccEE---CCcchHHHHHHHHHHC---------------CCC-EEEEEcc-cCHHHHHHHHcCcc
Confidence 48999974 579999998 5789999988887531 222 3566665 45667888887532
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccC
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVAD 164 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~D 164 (378)
.+|. ++.+..| ..+-|.++ ++.++. .+ +-+++.+.+.|++.....+
T Consensus 67 ~~~~---~~~~~~~---------------------~~~~G~~~~l~~a~~------~~---~~~~~lv~~~D~~~~~~~~ 113 (223)
T cd06915 67 RGGI---RIYYVIE---------------------PEPLGTGGAIKNALP------KL---PEDQFLVLNGDTYFDVDLL 113 (223)
T ss_pred ccCc---eEEEEEC---------------------CCCCcchHHHHHHHh------hc---CCCCEEEEECCcccCCCHH
Confidence 2221 1211111 12345553 444432 22 2367899999997632222
Q ss_pred HHHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHH
Q 017059 165 PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFL 244 (378)
Q Consensus 165 P~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl 244 (378)
.++-.+...+.++.+-+.+...+ ..-|++.. +++| .|+++.+-+... .. ...|+++.+|+-+++
T Consensus 114 -~~l~~~~~~~~~~~~~~~~~~~~-~~~~~v~~-d~~~--~v~~~~ek~~~~---------~~--~~~~~Giy~~~~~~l 177 (223)
T cd06915 114 -ALLAALRASGADATMALRRVPDA-SRYGNVTV-DGDG--RVIAFVEKGPGA---------AP--GLINGGVYLLRKEIL 177 (223)
T ss_pred -HHHHHHHhCCCcEEEEEEECCCC-CcceeEEE-CCCC--eEEEEEeCCCCC---------CC--CcEEEEEEEECHHHH
Confidence 24444555677777655544322 34565533 2344 355555532211 01 124778899999988
Q ss_pred HHH
Q 017059 245 NQV 247 (378)
Q Consensus 245 ~~~ 247 (378)
+++
T Consensus 178 ~~~ 180 (223)
T cd06915 178 AEI 180 (223)
T ss_pred hhC
Confidence 654
No 26
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.68 E-value=0.049 Score=54.60 Aligned_cols=184 Identities=16% Similarity=0.182 Sum_probs=106.1
Q ss_pred ccccCCC---CCCCcceeccCCCCC-ChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~k-sllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
.||||.- +.||.|+|+ .|+ ++++..++++... ++. -++|.|.. ..+.++++|++..
T Consensus 13 ~GtRl~plT~~~PK~llpv---~gk~pli~~~l~~l~~~---------------Gi~-~i~iv~~~-~~~~i~~~~~~~~ 72 (380)
T PRK05293 13 QGTRLGKLTKNIAKPAVPF---GGKYRIIDFTLSNCANS---------------GID-TVGVLTQY-QPLELNNHIGIGS 72 (380)
T ss_pred CCcccchhhcCCccceeee---CCceeehhHHHHHHHhC---------------CCC-EEEEEecC-CHHHHHHHHhCCC
Confidence 8999996 889999998 578 7999999988431 333 36777754 6788999998766
Q ss_pred CCCCCCC--cEEEEEcCceeEEecCCcccccCCCccccccCCCchh-hHHhhcCcHHHHHHHCCceEEEEEecCCCcccc
Q 017059 86 YFGLESD--QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGV-YSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 162 (378)
Q Consensus 86 ~Fgl~~~--~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i-~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~ 162 (378)
.++++.. .+.+. |. ....+ -...|-|.|+- +.++ +.+....-+++.|.+.|++.-
T Consensus 73 ~~~~~~~~~~~~i~-~~---~~~~~----------~~~~~~Gta~al~~a~------~~l~~~~~~~~lV~~gD~l~~-- 130 (380)
T PRK05293 73 PWDLDRINGGVTIL-PP---YSESE----------GGKWYKGTAHAIYQNI------DYIDQYDPEYVLILSGDHIYK-- 130 (380)
T ss_pred cccccCCCCCEEEe-CC---cccCC----------CCcccCCcHHHHHHHH------HHHHhCCCCEEEEecCCEEEc--
Confidence 6665432 12211 10 00000 00123466553 3333 233222346888999999652
Q ss_pred cCH-HHhHHHHhcCCcEEEEEecc-cCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEe
Q 017059 163 ADP-TFLGYFIDKGVSAGAKVVRK-AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFT 240 (378)
Q Consensus 163 ~DP-~~lG~~~~~~~~~~~kvv~K-~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~ 240 (378)
.|- .++-.+...++++.+-+.+. .....+-|++... .+| .|.++.|-|... .. ...|+..+.|+
T Consensus 131 ~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d-~~g--~V~~~~eKp~~~---------~~--~~~~~Giyi~~ 196 (380)
T PRK05293 131 MDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTD-ENM--RIVEFEEKPKNP---------KS--NLASMGIYIFN 196 (380)
T ss_pred CCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEEC-CCC--cEEEEEeCCCCC---------Cc--ceeeeEEEEEc
Confidence 333 36666667777754332211 1123456877653 244 455555543211 01 13588889999
Q ss_pred HHHHHHHhh
Q 017059 241 LDFLNQVAN 249 (378)
Q Consensus 241 l~fl~~~~~ 249 (378)
-+.+.+++.
T Consensus 197 ~~~l~~~l~ 205 (380)
T PRK05293 197 WKRLKEYLI 205 (380)
T ss_pred HHHHHHHHH
Confidence 988876654
No 27
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=96.66 E-value=0.089 Score=49.80 Aligned_cols=175 Identities=15% Similarity=0.225 Sum_probs=100.0
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC-
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK- 85 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~- 85 (378)
.||||.- ..||.|+|+ .|+++++..++.+..+ .++. .++|.+.. ..+.+.+++.+..
T Consensus 10 ~GtRl~plt~~~PK~llpv---~g~plI~~~l~~l~~~--------------~gi~-~i~iv~~~-~~~~i~~~l~~~~~ 70 (257)
T cd06428 10 KGTRFRPLSLDVPKPLFPV---AGKPMIHHHIEACAKV--------------PDLK-EVLLIGFY-PESVFSDFISDAQQ 70 (257)
T ss_pred CCcccCCccCCCCcccCeE---CCeeHHHHHHHHHHhc--------------CCCc-EEEEEecC-CHHHHHHHHHhccc
Confidence 5899986 889999998 5789999988877431 0222 24555554 6777889987532
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
.+|+ .|.+..| ..|-|.|+-.... .+.+....-+++.|.+.|++. . .|.
T Consensus 71 ~~~~---~i~~~~~---------------------~~~~Gt~~al~~a-----~~~l~~~~~~~~lv~~gD~~~-~-~dl 119 (257)
T cd06428 71 EFNV---PIRYLQE---------------------YKPLGTAGGLYHF-----RDQILAGNPSAFFVLNADVCC-D-FPL 119 (257)
T ss_pred ccCc---eEEEecC---------------------CccCCcHHHHHHH-----HHHhhccCCCCEEEEcCCeec-C-CCH
Confidence 2232 2222221 1234555543322 223322234688999999985 2 343
Q ss_pred -HHhHHHHhcCCcEEEEEeccc-CCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHH
Q 017059 166 -TFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDF 243 (378)
Q Consensus 166 -~~lG~~~~~~~~~~~kvv~K~-~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~f 243 (378)
.++-++.++++++.+-+.+.. .....-|++.....+| .|.++.|=|... .. ...|+..++|+-+.
T Consensus 120 ~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g--~v~~~~Ekp~~~---------~~--~~~~~Giyi~~~~~ 186 (257)
T cd06428 120 QELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTG--EVLHYVEKPETF---------VS--DLINCGVYLFSPEI 186 (257)
T ss_pred HHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCC--eEEEEEeCCCCc---------cc--ceEEEEEEEECHHH
Confidence 367888888888764333211 1223457765531234 344554433211 01 13688899999998
Q ss_pred HHHH
Q 017059 244 LNQV 247 (378)
Q Consensus 244 l~~~ 247 (378)
++.+
T Consensus 187 ~~~i 190 (257)
T cd06428 187 FDTI 190 (257)
T ss_pred HHHH
Confidence 7544
No 28
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=96.63 E-value=0.042 Score=51.39 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=95.4
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||+- ..||.++|++ ++++++..++.+.. .++. .+++.++....+...+++.....
T Consensus 10 ~gtRl~plt~~~pK~llpv~---~~pli~~~l~~l~~---------------~gi~-~i~vv~~~~~~~~~~~~l~~~~~ 70 (240)
T cd02538 10 SGTRLYPLTKVVSKQLLPVY---DKPMIYYPLSTLML---------------AGIR-EILIISTPEDLPLFKELLGDGSD 70 (240)
T ss_pred CcccCCccccCCCceeeEEC---CEEhHHHHHHHHHH---------------CCCC-EEEEEeCcchHHHHHHHHhcccc
Confidence 8999975 7899999995 89999998887742 1222 46777776666778888876444
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP- 165 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP- 165 (378)
+++ +|.+-.| ..|.|.|+-..+. .+.+ . + +...+.+.|++... .|-
T Consensus 71 ~~~---~i~~~~~---------------------~~~~G~~~al~~a-----~~~~-~-~-~~~lv~~gD~~~~~-~~~~ 117 (240)
T cd02538 71 LGI---RITYAVQ---------------------PKPGGLAQAFIIG-----EEFI-G-D-DPVCLILGDNIFYG-QGLS 117 (240)
T ss_pred cCc---eEEEeeC---------------------CCCCCHHHHHHHH-----HHhc-C-C-CCEEEEECCEEEcc-HHHH
Confidence 443 2221111 1244555433222 1122 1 1 44567788987632 222
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
.++-.+..++.++.+-+.+-.. .+.-|++... .+| .|+++.|=|... .. ...|++.++|+-++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~v~~d-~~g--~v~~~~ekp~~~---------~~--~~~~~Giyi~~~~~l~ 182 (240)
T cd02538 118 PILQRAAAQKEGATVFGYEVND-PERYGVVEFD-ENG--RVLSIEEKPKKP---------KS--NYAVTGLYFYDNDVFE 182 (240)
T ss_pred HHHHHHHhcCCCcEEEEEECCc-hhcCceEEec-CCC--cEEEEEECCCCC---------CC--CeEEEEEEEECHHHHH
Confidence 2455555566666543333222 3456776553 345 455554422211 01 1357788999988764
No 29
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=96.58 E-value=0.046 Score=54.61 Aligned_cols=182 Identities=12% Similarity=0.112 Sum_probs=102.9
Q ss_pred ccccCCC---CCCCcceeccCCCCC-ChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~k-sllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
.||||.- +.||.|+|+ .|| .+++..++.+.+. ++. -++|.++..-.+.+++||.+..
T Consensus 12 ~gtRL~PLT~~~PKpLlpV---~gk~PlIe~~l~~L~~~---------------Gi~-~I~iv~~~~~~~~I~~~l~~~~ 72 (369)
T TIGR02092 12 SSKNLSPLTKVRPLASLPF---GGRYRLIDFPLSNMVNA---------------GIR-NVFIFFKNKERQSLFDHLGSGR 72 (369)
T ss_pred CCccccccccCCccccccc---CCeeeEEEEEhhhhhcc---------------CCC-EEEEEeCCCcHHHHHHHHhCCC
Confidence 8999984 899999988 688 7999999988532 222 4777777665558999998766
Q ss_pred CCCCCCCcE---EEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccc
Q 017059 86 YFGLESDQV---TFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 162 (378)
Q Consensus 86 ~Fgl~~~~v---~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~ 162 (378)
.||++..+. .++.|. ..|-|.|+.+..... ++.+...+-+.+.|.+.|++. .
T Consensus 73 ~~~~~~~~~~~~~~~~~e--------------------~~~l~tg~~~a~~~a---~~~l~~~~~~~~lvlnGD~l~--~ 127 (369)
T TIGR02092 73 EWDLHRKRDGLFVFPYND--------------------RDDLSEGGKRYFSQN---LEFLKRSTSEYTVVLNSHMVC--N 127 (369)
T ss_pred CCCcccccCcEEEEeccC--------------------CCCcccChHHHHHHH---HHHHHhCCCCEEEEECCCEEE--e
Confidence 677643211 111111 123344454322211 223322234789999999854 3
Q ss_pred cCH-HHhHHHHhcCCcEEEEEeccc--CCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeE
Q 017059 163 ADP-TFLGYFIDKGVSAGAKVVRKA--YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 239 (378)
Q Consensus 163 ~DP-~~lG~~~~~~~~~~~kvv~K~--~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~ 239 (378)
.|. .++-++.++++++.+-+.+-. .+....|++... .+|+ +.++.+-++. . . . . ..|+.++.|
T Consensus 128 ~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~-~~g~--v~~~~~~~~~---~--~-~----~-~~~~Giyi~ 193 (369)
T TIGR02092 128 IDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFD-ESGK--VKSIGQNLNP---E--E-E----E-NISLDIYIV 193 (369)
T ss_pred cCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEc-CCCC--EEeccccCCC---C--C-c----c-eeeeeEEEE
Confidence 454 366777777888754433211 233344554443 2453 3333211110 0 0 0 1 136778999
Q ss_pred eHHHHHHHhh
Q 017059 240 TLDFLNQVAN 249 (378)
Q Consensus 240 ~l~fl~~~~~ 249 (378)
+-+.+.++++
T Consensus 194 ~~~~l~~~l~ 203 (369)
T TIGR02092 194 STDLLIELLY 203 (369)
T ss_pred EHHHHHHHHH
Confidence 9877655543
No 30
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=96.48 E-value=0.081 Score=52.56 Aligned_cols=170 Identities=21% Similarity=0.263 Sum_probs=99.2
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||+ ...||.++|+ .|+++++..++.+... +. -.++|+|+....+.+.+++.+...
T Consensus 9 ~gtRl~plt~~~pK~l~pv---~g~pli~~~l~~l~~~---------------gi-~~i~vv~~~~~~~~i~~~~~~~~~ 69 (353)
T TIGR01208 9 KGTRLRPLTFTRPKQLIPV---ANKPILQYAIEDLAEA---------------GI-TDIGIVVGPVTGEEIKEIVGEGER 69 (353)
T ss_pred CcCccCccccCCCccccEE---CCEeHHHHHHHHHHHC---------------CC-CEEEEEeCCCCHHHHHHHHhcccc
Confidence 899997 4889999998 5889999988877421 22 147888888788889999987555
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT 166 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~ 166 (378)
+++ ++.+..|. .|.|.++-..+. ++.+. + +-+.+.+.|++.-..+ -.
T Consensus 70 ~~~---~~~~~~~~---------------------~~~G~~~al~~a-----~~~l~--~-~~~li~~gD~~~~~~l-~~ 116 (353)
T TIGR01208 70 FGA---KITYIVQG---------------------EPLGLAHAVYTA-----RDFLG--D-DDFVVYLGDNLIQDGI-SR 116 (353)
T ss_pred cCc---eEEEEECC---------------------CCCCHHHHHHHH-----HHhcC--C-CCEEEEECCeecCccH-HH
Confidence 553 33333331 245555433332 22221 1 2355667899873222 23
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
++-.+.++++++.+-+.+...+ +.-|++... .++ .|.++.|-|.... . ...|+..++|+-.+++.
T Consensus 117 l~~~~~~~~~d~ti~~~~~~~~-~~~g~~~~~-~~~--~v~~~~ekp~~~~---------~--~~~~~Giy~~~~~l~~~ 181 (353)
T TIGR01208 117 FVKSFEEKDYDALILLTKVRDP-TAFGVAVLE-DGK--RILKLVEKPKEPP---------S--NLAVVGLYMFRPLIFEA 181 (353)
T ss_pred HHHHHHhcCCCcEEEEEECCCh-hhCeEEEEc-CCC--cEEEEEECCCCCC---------c--cceEEEEEEECHHHHHH
Confidence 6666777788876555443333 345776552 233 3444433332110 0 12477889999855543
No 31
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=96.48 E-value=0.074 Score=48.92 Aligned_cols=166 Identities=18% Similarity=0.192 Sum_probs=94.5
Q ss_pred cccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 9 IQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 9 ~qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
++||||+- ..||.++|+ .|+++++..++.+... ++. .++|.| ....+.+.+++.. .
T Consensus 8 G~g~Rl~plt~~~pK~llpi---~g~~li~~~l~~l~~~---------------gi~-~i~iv~-~~~~~~i~~~~~~-~ 66 (221)
T cd06422 8 GLGTRMRPLTDTRPKPLVPV---AGKPLIDHALDRLAAA---------------GIR-RIVVNT-HHLADQIEAHLGD-S 66 (221)
T ss_pred CCCCccccccCCCCCceeeE---CCEEHHHHHHHHHHHC---------------CCC-EEEEEc-cCCHHHHHHHHhc-c
Confidence 37999975 689999998 5889999998887531 222 245555 4677888899886 4
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCc-hhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccC
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNG-GVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVAD 164 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG-~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~D 164 (378)
++|+ ++.+..|. + .+-|.| .++.++. .+ +-+++.|.+.|++.- .|
T Consensus 67 ~~~~---~i~~~~~~---------------~-----~~~g~~~~l~~~~~------~~---~~~~~lv~~~D~i~~--~~ 112 (221)
T cd06422 67 RFGL---RITISDEP---------------D-----ELLETGGGIKKALP------LL---GDEPFLVVNGDILWD--GD 112 (221)
T ss_pred cCCc---eEEEecCC---------------C-----cccccHHHHHHHHH------hc---CCCCEEEEeCCeeeC--CC
Confidence 4443 23221111 0 233443 3444432 22 127899999999762 34
Q ss_pred H-HHhHHHH--hcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeH
Q 017059 165 P-TFLGYFI--DKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTL 241 (378)
Q Consensus 165 P-~~lG~~~--~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l 241 (378)
. .++=.+. ..+.++.+.+++... .+.-|++... .+| .|.++.+=++ . ...|+.+..|+-
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~v~~d-~~~--~v~~~~~~~~---------~-----~~~~~Giyi~~~ 174 (221)
T cd06422 113 LAPLLLLHAWRMDALLLLLPLVRNPG-HNGVGDFSLD-ADG--RLRRGGGGAV---------A-----PFTFTGIQILSP 174 (221)
T ss_pred HHHHHHHHHhccCCCceEEEEEEcCC-CCCcceEEEC-CCC--cEeecccCCC---------C-----ceEEEEEEEEcH
Confidence 2 2444444 355566555444332 3345776553 244 3555433221 0 135777888987
Q ss_pred HHHHHH
Q 017059 242 DFLNQV 247 (378)
Q Consensus 242 ~fl~~~ 247 (378)
+.+..+
T Consensus 175 ~~l~~l 180 (221)
T cd06422 175 ELFAGI 180 (221)
T ss_pred HHHhhC
Confidence 776543
No 32
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.36 E-value=0.15 Score=53.11 Aligned_cols=175 Identities=17% Similarity=0.170 Sum_probs=99.0
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||+.+.||.++|+ .++++++..++++.+. +. -.++|.++.. .+.+.++++...
T Consensus 14 ~gtRm~~~~pK~llpi---~gkpli~~~l~~l~~~---------------g~-~~iivvv~~~-~~~i~~~~~~~~---- 69 (482)
T PRK14352 14 AGTRMRSDTPKVLHTL---AGRSMLGHVLHAAAGL---------------AP-QHLVVVVGHD-RERVAPAVAELA---- 69 (482)
T ss_pred CCCcCCCCCCceecee---CCccHHHHHHHHHHhc---------------CC-CcEEEEECCC-HHHHHHHhhccC----
Confidence 7999998889999988 5899999999988532 12 2577777754 456777776421
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-HH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP-TF 167 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP-~~ 167 (378)
..+.+..| ..|.|.|+ ++.++. .+....-+++.|.+.|+++....|- .+
T Consensus 70 --~~~~~~~~---------------------~~~~Gt~~si~~al~------~l~~~~~~~vlV~~gD~P~~~~~~l~~l 120 (482)
T PRK14352 70 --PEVDIAVQ---------------------DEQPGTGHAVQCALE------ALPADFDGTVVVTAGDVPLLDGETLADL 120 (482)
T ss_pred --CccEEEeC---------------------CCCCCcHHHHHHHHH------HhccCCCCeEEEEeCCeeccCHHHHHHH
Confidence 11222222 12334443 444442 2322234688999999986422222 13
Q ss_pred hHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCe-EEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 168 LGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 168 lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~-~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
+-.+...+.++.+-+.+.. ....-|.+... .+|+. .++|..+.++... .....|++.++|+-+.|.+
T Consensus 121 i~~~~~~~~~~~v~~~~~~-~p~~yg~~~~~-~~g~V~~~~EKp~~~~~~~----------~~~~~~~Giy~f~~~~l~~ 188 (482)
T PRK14352 121 VATHTAEGNAVTVLTTTLD-DPTGYGRILRD-QDGEVTAIVEQKDATPSQR----------AIREVNSGVYAFDAAVLRS 188 (482)
T ss_pred HHHHHhcCCeEEEEEeecC-CCCCCCEEEEC-CCCCEEEEEECCCCCHHHh----------hcceEEEEEEEEEHHHHHH
Confidence 4444455655543333222 23345766553 35643 3455444332211 1112578889999998877
Q ss_pred Hhh
Q 017059 247 VAN 249 (378)
Q Consensus 247 ~~~ 249 (378)
+++
T Consensus 189 ~~~ 191 (482)
T PRK14352 189 ALA 191 (482)
T ss_pred HHH
Confidence 664
No 33
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=96.32 E-value=0.13 Score=47.90 Aligned_cols=173 Identities=16% Similarity=0.221 Sum_probs=101.5
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC-
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK- 85 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~- 85 (378)
.||||+- ..||.++|+ .|+++++..++.+... +.. .++|.|+. .++.+++++.+..
T Consensus 10 ~g~R~~~lt~~~pK~llpv---~g~pli~~~l~~l~~~---------------g~~-~v~iv~~~-~~~~~~~~l~~~~~ 69 (233)
T cd06425 10 YGTRLRPLTLTVPKPLVEF---CNKPMIEHQIEALAKA---------------GVK-EIILAVNY-RPEDMVPFLKEYEK 69 (233)
T ss_pred CccccCccccCCCCccCeE---CCcchHHHHHHHHHHC---------------CCc-EEEEEeee-CHHHHHHHHhcccc
Confidence 8999974 689999988 5789999888887531 121 36677765 4567888887431
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
.+|+ ++.+.. ...|.|.|+-.... .+.+. +.-+-+.+.+.|++. ...-.
T Consensus 70 ~~~~---~i~~~~---------------------~~~~~G~~~al~~a-----~~~~~-~~~~~~lv~~~D~~~-~~~~~ 118 (233)
T cd06425 70 KLGI---KITFSI---------------------ETEPLGTAGPLALA-----RDLLG-DDDEPFFVLNSDVIC-DFPLA 118 (233)
T ss_pred cCCe---EEEecc---------------------CCCCCccHHHHHHH-----HHHhc-cCCCCEEEEeCCEee-CCCHH
Confidence 1221 111100 11255655433322 22232 212335677888875 22224
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
.++-++..++++..+-+.+.. ...+-|++.....+| .|+++.|=|.+.. .. ..|+++++|+-+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~v~~d~~~~--~v~~~~ekp~~~~---------~~--~~~~Giyi~~~~~l~ 184 (233)
T cd06425 119 ELLDFHKKHGAEGTILVTKVE-DPSKYGVVVHDENTG--RIERFVEKPKVFV---------GN--KINAGIYILNPSVLD 184 (233)
T ss_pred HHHHHHHHcCCCEEEEEEEcC-CccccCeEEEcCCCC--EEEEEEECCCCCC---------CC--EEEEEEEEECHHHHH
Confidence 588888888888876665543 335678876542123 5677765433211 11 258888999998886
Q ss_pred HH
Q 017059 246 QV 247 (378)
Q Consensus 246 ~~ 247 (378)
.+
T Consensus 185 ~l 186 (233)
T cd06425 185 RI 186 (233)
T ss_pred hc
Confidence 54
No 34
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=96.14 E-value=0.35 Score=46.62 Aligned_cols=188 Identities=15% Similarity=0.077 Sum_probs=105.3
Q ss_pred ccccCC----CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 10 QGTRLG----SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 10 qGtRLG----~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
.||||. ...||-++|+ ..++|++|..++++..+. ++ -.++|.|+....+.+++++++
T Consensus 10 ~GtRl~PlS~~~~PK~ll~l--~g~~~li~~~l~~l~~~~--------------~~-~~i~vvt~~~~~~~v~~~l~~-- 70 (274)
T cd02509 10 SGTRLWPLSRESYPKQFLKL--FGDKSLLQQTLDRLKGLV--------------PP-DRILVVTNEEYRFLVREQLPE-- 70 (274)
T ss_pred ccccCCcCCCCCCCceEeEc--CCCCcHHHHHHHHHhcCC--------------CC-CcEEEEechHHHHHHHHHHhh--
Confidence 899996 5789999987 334999999999875321 11 268899987777778888865
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHH-CCceEEEEEecCCCccccc
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMAT-RGIKYIDCYGVDNALVRVA 163 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~-~Gi~yi~v~~vDN~l~~~~ 163 (378)
.+ ..+.++.|+ .|-|.|+ +..++ ..+.. .+-+++.|.+.|.+.....
T Consensus 71 -~~---~~~~ii~ep---------------------~~~gTa~ai~~a~------~~~~~~~~~~~vlVl~~D~~i~~~~ 119 (274)
T cd02509 71 -GL---PEENIILEP---------------------EGRNTAPAIALAA------LYLAKRDPDAVLLVLPSDHLIEDVE 119 (274)
T ss_pred -cC---CCceEEECC---------------------CCCCcHHHHHHHH------HHHHhcCCCCeEEEecchhcccCHH
Confidence 11 122222222 1233333 33322 12222 2357899999998873111
Q ss_pred CH-HHhHHH---HhcCCcEEEEEecccCCCccceeEEEecCC-C-CeEEEEecCCChhhhhhccCCCCccccccccceee
Q 017059 164 DP-TFLGYF---IDKGVSAGAKVVRKAYPQEKVGVFVRRGKG-G-PLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 237 (378)
Q Consensus 164 DP-~~lG~~---~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~-g-~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~ 237 (378)
|- ..+--+ +..+..+.+-+.+ +.|...-|.+...... | ...|..+.|=|+....+..-.+|.. + -|..++
T Consensus 120 ~f~~~l~~~~~~~~~~~~vt~gi~p-~~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~-~--wNsGiy 195 (274)
T cd02509 120 AFLKAVKKAVEAAEEGYLVTFGIKP-TRPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNY-L--WNSGIF 195 (274)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeee-cCCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCe-E--EECcee
Confidence 10 122111 2255566555544 3466677888664211 1 2356566555543221100012211 2 388899
Q ss_pred eEeHHHHHHHhhcc
Q 017059 238 MFTLDFLNQVANGL 251 (378)
Q Consensus 238 ~~~l~fl~~~~~~~ 251 (378)
+|+.+.+.+.++.+
T Consensus 196 i~~~~~l~~~l~~~ 209 (274)
T cd02509 196 LFRAKTFLEELKKH 209 (274)
T ss_pred eeeHHHHHHHHHHH
Confidence 99999998777643
No 35
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=95.98 E-value=0.22 Score=51.90 Aligned_cols=167 Identities=18% Similarity=0.185 Sum_probs=89.7
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.|||||...||.++|+ .++++++..++++.+. ++. .++|.|.. ..+.+.++++.
T Consensus 17 ~gtRl~~~~pK~llpi---~gkpli~~~l~~l~~~---------------gi~-~ivvv~~~-~~~~i~~~~~~------ 70 (481)
T PRK14358 17 QGTRMKSALPKVLHPV---AGRPMVAWAVKAARDL---------------GAR-KIVVVTGH-GAEQVEAALQG------ 70 (481)
T ss_pred CCCcCCCCCCceecEE---CCeeHHHHHHHHHHhC---------------CCC-eEEEEeCC-CHHHHHHHhcc------
Confidence 7999998889999988 5889999988877431 221 35666665 45667777652
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-HHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP-TFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP-~~l 168 (378)
..+.+..|+ .|-|-|+-...- ++.+. ..-+.+.|.+.|+++....+- .++
T Consensus 71 --~~i~~v~~~---------------------~~~Gt~~al~~~-----~~~l~-~~~~~~lV~~gD~P~i~~~~l~~ll 121 (481)
T PRK14358 71 --SGVAFARQE---------------------QQLGTGDAFLSG-----ASALT-EGDADILVLYGDTPLLRPDTLRALV 121 (481)
T ss_pred --CCcEEecCC---------------------CcCCcHHHHHHH-----HHHhh-CCCCcEEEEeCCeeccCHHHHHHHH
Confidence 123333221 134555433322 22232 222336788999987432222 245
Q ss_pred HHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHH
Q 017059 169 GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLD 242 (378)
Q Consensus 169 G~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~ 242 (378)
-.+...+.++.+-+.+.. ...+-|++... .+|+ |.++.|=|+....+. ... ..|+..++|+-+
T Consensus 122 ~~~~~~~~~~ti~~~~~~-~~~~yG~v~~d-~~g~--v~~~~Ek~~~~~~~~-----~~~--~~n~Giyi~~~~ 184 (481)
T PRK14358 122 ADHRAQGSAMTILTGELP-DATGYGRIVRG-ADGA--VERIVEQKDATDAEK-----AIG--EFNSGVYVFDAR 184 (481)
T ss_pred HHHHhcCCeEEEEEEEcC-CCCCceEEEEC-CCCC--EEEEEECCCCChhHh-----hCC--eEEEEEEEEchH
Confidence 556666776654333222 22346887654 3453 444443222111100 011 247778999844
No 36
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=95.87 E-value=0.26 Score=50.14 Aligned_cols=191 Identities=15% Similarity=0.237 Sum_probs=105.6
Q ss_pred ccccCC---CCCCCcceeccCCCCC-ChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~k-sllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
.||||. .+.||.|+|+ .|| .+++..++.+... ++. -++|.|. ...+.+.++|.+.
T Consensus 15 ~GtRl~PLT~~~PK~llPv---~gk~plI~~~L~~l~~~---------------Gi~-~i~iv~~-~~~~~i~~~~~~~- 73 (407)
T PRK00844 15 EGKRLMPLTADRAKPAVPF---GGSYRLIDFVLSNLVNS---------------GYL-RIYVLTQ-YKSHSLDRHISQT- 73 (407)
T ss_pred CCCccchhhcCCcccceee---CCcceEhHHHHHHHHHC---------------CCC-EEEEEec-cCHHHHHHHHHhC-
Confidence 899999 8999999998 576 8999988877431 221 3566665 4678899999742
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
+++..-.+.++.. .|.-. .. -...|-|.|+-.... ++.+....-+++.|.+.|++. ..|.
T Consensus 74 -~~~~~~~~~~~~~--~~~~~--------~~--~~~~~lGta~al~~a-----~~~i~~~~~~~~lv~~gD~v~--~~dl 133 (407)
T PRK00844 74 -WRLSGLLGNYITP--VPAQQ--------RL--GKRWYLGSADAIYQS-----LNLIEDEDPDYVVVFGADHVY--RMDP 133 (407)
T ss_pred -cCccccCCCeEEE--CCccc--------CC--CCCcccCCHHHHHHH-----HHHHHhcCCCEEEEecCCEEE--cCCH
Confidence 3322112222110 00000 00 012355776654322 334433344788999999865 2343
Q ss_pred -HHhHHHHhcCCcEEEEEe--cccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHH
Q 017059 166 -TFLGYFIDKGVSAGAKVV--RKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLD 242 (378)
Q Consensus 166 -~~lG~~~~~~~~~~~kvv--~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~ 242 (378)
.++-++...++++.+-+. +... ...-|++... .+|+ |.++.|=|........ . ......|+.++.|+-+
T Consensus 134 ~~l~~~h~~~~~~~ti~~~~~~~~~-~~~~Gvv~~d-~~g~--v~~~~eKp~~~~~~~~--~--~~~~~~~~Giyi~~~~ 205 (407)
T PRK00844 134 RQMVDFHIESGAGVTVAAIRVPREE-ASAFGVIEVD-PDGR--IRGFLEKPADPPGLPD--D--PDEALASMGNYVFTTD 205 (407)
T ss_pred HHHHHHHHhcCCcEEEEEEecchHH-cccCCEEEEC-CCCC--EEEEEECCCCcccccC--C--CCCcEEEeEEEEEeHH
Confidence 367777777877654332 2222 2356887653 2453 4445443322110000 0 0012358888999999
Q ss_pred HHHHHhh
Q 017059 243 FLNQVAN 249 (378)
Q Consensus 243 fl~~~~~ 249 (378)
.|.++++
T Consensus 206 ~l~~~l~ 212 (407)
T PRK00844 206 ALVDALR 212 (407)
T ss_pred HHHHHHH
Confidence 8866554
No 37
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=95.87 E-value=0.36 Score=45.57 Aligned_cols=182 Identities=17% Similarity=0.184 Sum_probs=98.4
Q ss_pred cccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 9 IQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 9 ~qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
+.||||. .+.||.|+|+ .++++++..++.+.. .++. .++|.++ ...+.+++|+++..
T Consensus 7 G~g~Rl~plt~~~pK~llpv---~~~p~i~~~~~~~~~---------------~gi~-~i~iv~~-~~~~~i~~~~~~~~ 66 (253)
T cd02524 7 GLGTRLSEETELKPKPMVEI---GGRPILWHIMKIYSH---------------YGHN-DFILCLG-YKGHVIKEYFLNYF 66 (253)
T ss_pred CCccccCCccCCCCceEEEE---CCEEHHHHHHHHHHh---------------CCCc-eEEEECC-CCHHHHHHHHHhhh
Confidence 4799997 4789999988 578888876665532 1222 3566555 45678999998755
Q ss_pred CCCCCCCcEEEEEcCceeEE-ecCCcccccCCCcc----ccccCCCchh-hHHhhcCcHHHHHHHCCc-eEEEEEecCCC
Q 017059 86 YFGLESDQVTFFQQGTIPCV-SKDGRFIMETPYKV----AKAPDGNGGV-YSALKSSKLLEDMATRGI-KYIDCYGVDNA 158 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~-~~~g~~~l~~~~~i----~~~P~GhG~i-~~aL~~sG~ld~l~~~Gi-~yi~v~~vDN~ 158 (378)
.+|. ++.+-.|..--.+ ..+. +++.+ ...|-|+|+- +.++ +.+ +- +++.+.+.|++
T Consensus 67 ~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~t~~al~~a~------~~~---~~~~~~lv~~gD~i 129 (253)
T cd02524 67 LHNS---DVTIDLGTNRIELHNSDI-----EDWKVTLVDTGLNTMTGGRLKRVR------RYL---GDDETFMLTYGDGV 129 (253)
T ss_pred hhcC---ceeEeecccceeeecccc-----cccceeecccCcccccHHHHHHHH------Hhc---CCCCeEEEEcCCEE
Confidence 4442 2322211100000 0000 11111 1224556553 3333 122 22 78999999998
Q ss_pred cccccCHHHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeee
Q 017059 159 LVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 238 (378)
Q Consensus 159 l~~~~DP~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~ 238 (378)
.-.-. -.++-++...++++.+-++. +...-|++... .+| .|.++.+=|... . ...|+++++
T Consensus 130 ~~~dl-~~ll~~h~~~~~~~tl~~~~---~~~~~g~v~~d-~~g--~V~~~~ekp~~~--------~----~~i~~Giyi 190 (253)
T cd02524 130 SDVNI-NALIEFHRSHGKLATVTAVH---PPGRFGELDLD-DDG--QVTSFTEKPQGD--------G----GWINGGFFV 190 (253)
T ss_pred ECCCH-HHHHHHHHHcCCCEEEEEec---CCCcccEEEEC-CCC--CEEEEEECCCCC--------C----ceEEEEEEE
Confidence 74333 33566667778887655443 23456776543 345 344444422110 0 124667788
Q ss_pred EeHHHHHH
Q 017059 239 FTLDFLNQ 246 (378)
Q Consensus 239 ~~l~fl~~ 246 (378)
|+-+.++.
T Consensus 191 ~~~~l~~~ 198 (253)
T cd02524 191 LEPEVFDY 198 (253)
T ss_pred ECHHHHHh
Confidence 88776543
No 38
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=95.86 E-value=0.19 Score=45.94 Aligned_cols=166 Identities=19% Similarity=0.301 Sum_probs=93.5
Q ss_pred cccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 9 IQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 9 ~qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
++||||+ ...||.++|+ .|+++++..++++... +.. .++|.++. ..+.+.+++.+..
T Consensus 7 G~g~R~~plt~~~pK~ll~~---~g~pli~~~l~~l~~~---------------~~~-~iivv~~~-~~~~i~~~~~~~~ 66 (220)
T cd06426 7 GKGTRLRPLTENTPKPMLKV---GGKPILETIIDRFIAQ---------------GFR-NFYISVNY-LAEMIEDYFGDGS 66 (220)
T ss_pred CCccccCcccCCCCCccCeE---CCcchHHHHHHHHHHC---------------CCc-EEEEECcc-CHHHHHHHHCCcc
Confidence 4899997 3689999988 6889999998887531 222 35566665 4566777877533
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
.+|+ ++.+..|+ .|.|-|+....+. +..-+.+.|.+.|++.....+
T Consensus 67 ~~~~---~i~~~~~~---------------------~~~g~~~~l~~~~---------~~~~~~~lv~~~D~i~~~~~~- 112 (220)
T cd06426 67 KFGV---NISYVRED---------------------KPLGTAGALSLLP---------EKPTDPFLVMNGDILTNLNYE- 112 (220)
T ss_pred ccCc---cEEEEECC---------------------CCCcchHHHHHHH---------hhCCCCEEEEcCCEeeccCHH-
Confidence 2332 23222211 2335455443332 122467888899975532222
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
.++-.+...+.++.+-+.+. .+...-|++.. + +| .|+++.|=|. .+ .+ .|++..+|+-+.++
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~-d-~~--~v~~~~ek~~---------~~--~~--~~~Giy~~~~~~~~ 174 (220)
T cd06426 113 HLLDFHKENNADATVCVREY-EVQVPYGVVET-E-GG--RITSIEEKPT---------HS--FL--VNAGIYVLEPEVLD 174 (220)
T ss_pred HHHHHHHhcCCCEEEEEEEc-CCCCcceEEEE-C-CC--EEEEEEECCC---------CC--Ce--EEEEEEEEcHHHHh
Confidence 25555666777776644443 23444555433 2 33 4556543111 11 12 46778999988765
Q ss_pred H
Q 017059 246 Q 246 (378)
Q Consensus 246 ~ 246 (378)
.
T Consensus 175 ~ 175 (220)
T cd06426 175 L 175 (220)
T ss_pred h
Confidence 3
No 39
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=95.78 E-value=0.38 Score=49.25 Aligned_cols=171 Identities=18% Similarity=0.164 Sum_probs=93.8
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+|||||...||.++|+ .||++++..++.+... ++ -.++|.++. .++.+.+++.+. +.
T Consensus 15 ~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~~---------------gi-~~ivvv~~~-~~~~i~~~~~~~---~~ 71 (446)
T PRK14353 15 EGTRMKSSLPKVLHPV---AGRPMLAHVLAAAASL---------------GP-SRVAVVVGP-GAEAVAAAAAKI---AP 71 (446)
T ss_pred CCCccCCCCCcccCEE---CCchHHHHHHHHHHhC---------------CC-CcEEEEECC-CHHHHHHHhhcc---CC
Confidence 8999998889999988 6899999999887431 11 135666665 456677776531 11
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
.+.++.|. .|.|.++ ++.++ +.+. .+-+++.+.+.|.++. ++..+
T Consensus 72 ---~~~~~~~~---------------------~~~G~~~sl~~a~------~~l~-~~~~~~lv~~~D~P~i---~~~~l 117 (446)
T PRK14353 72 ---DAEIFVQK---------------------ERLGTAHAVLAAR------EALA-GGYGDVLVLYGDTPLI---TAETL 117 (446)
T ss_pred ---CceEEEcC---------------------CCCCcHHHHHHHH------HHHh-ccCCCEEEEeCCcccC---CHHHH
Confidence 12222221 1334433 33322 2332 2357788999999773 44434
Q ss_pred HHH---HhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 169 GYF---IDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 169 G~~---~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
--+ .+.+.+..+-+.+... ..+.|++.. ++|+ |+++.|=|+....+ ... ...|+..++|+-+.+.
T Consensus 118 ~~l~~~~~~~~~~~i~~~~~~~-~~~~g~~~~--~~g~--v~~~~ek~~~~~~~-----~~~--~~~~~Giy~~~~~~l~ 185 (446)
T PRK14353 118 ARLRERLADGADVVVLGFRAAD-PTGYGRLIV--KGGR--LVAIVEEKDASDEE-----RAI--TLCNSGVMAADGADAL 185 (446)
T ss_pred HHHHHhHhcCCcEEEEEEEeCC-CCcceEEEE--CCCe--EEEEEECCCCChHH-----hhc--eEEEEEEEEEEHHHHH
Confidence 333 2345666554444332 245676654 2453 44554422211110 001 1247778899887775
Q ss_pred HHhh
Q 017059 246 QVAN 249 (378)
Q Consensus 246 ~~~~ 249 (378)
++++
T Consensus 186 ~~l~ 189 (446)
T PRK14353 186 ALLD 189 (446)
T ss_pred HHHH
Confidence 5554
No 40
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=95.62 E-value=0.26 Score=46.00 Aligned_cols=173 Identities=17% Similarity=0.211 Sum_probs=92.7
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+++||+ +|.++|+ .|+++++..++++.+. +.. .++|-| +++.+.+++.+ +|.
T Consensus 12 ~S~R~~---~K~Ll~i---~Gkpll~~~l~~l~~~---------------~i~-~ivvv~---~~~~i~~~~~~---~~~ 63 (245)
T PRK05450 12 ASTRLP---GKPLADI---GGKPMIVRVYERASKA---------------GAD-RVVVAT---DDERIADAVEA---FGG 63 (245)
T ss_pred CCCCCC---CCccccc---CCcCHHHHHHHHHHhc---------------CCC-eEEEEC---CcHHHHHHHHH---cCC
Confidence 778995 7999987 7899999999988542 111 234444 24677887764 231
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh-
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL- 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l- 168 (378)
++.+..|. .+.|.+++..++. .+...+-+++.+.+.|+++. ++..+
T Consensus 64 ---~v~~~~~~---------------------~~~gt~~~~~~~~------~~~~~~~~~vlv~~~D~Pli---~~~~l~ 110 (245)
T PRK05450 64 ---EVVMTSPD---------------------HPSGTDRIAEAAA------KLGLADDDIVVNVQGDEPLI---PPEIID 110 (245)
T ss_pred ---EEEECCCc---------------------CCCchHHHHHHHH------hcCCCCCCEEEEecCCCCCC---CHHHHH
Confidence 22111111 1344455444332 22112346789999999884 44444
Q ss_pred ---HHHHhcCCcEEEEEeccc-----CCCccceeEEEecCCCCeEEEEecCCCh-hhhhhccCCCCccccccccceeeeE
Q 017059 169 ---GYFIDKGVSAGAKVVRKA-----YPQEKVGVFVRRGKGGPLTVVEYSELDP-SLASAINQETGRLRFCWSNVCLHMF 239 (378)
Q Consensus 169 ---G~~~~~~~~~~~kvv~K~-----~~~EkvGvl~~~~~~g~~~vvEYsel~~-~~~~~~~~~~g~l~f~~gNi~~~~~ 239 (378)
-.+..++.++.+-+++.. ...+.+|++ .. ++|+ |++..+-|. +.....+...... ...|+++..|
T Consensus 111 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d-~~g~--v~~~~e~~~~~~~~~~~~~~~~~--~~~~~Giy~~ 184 (245)
T PRK05450 111 QVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LD-ADGR--ALYFSRAPIPYGRDAFADSAPTP--VYRHIGIYAY 184 (245)
T ss_pred HHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eC-CCCc--EEEecCCCCCCCCCccccccCcc--ccEEEEEEec
Confidence 333334456554344331 233446665 32 3453 445555542 1110000000111 2369999999
Q ss_pred eHHHHHHHhh
Q 017059 240 TLDFLNQVAN 249 (378)
Q Consensus 240 ~l~fl~~~~~ 249 (378)
+-+.++.+.+
T Consensus 185 ~~~~l~~~~~ 194 (245)
T PRK05450 185 RRGFLRRFVS 194 (245)
T ss_pred CHHHHHHHHh
Confidence 9998887654
No 41
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=95.59 E-value=0.38 Score=49.64 Aligned_cols=175 Identities=18% Similarity=0.159 Sum_probs=98.9
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||+...||.++|+ .++++++..++++.+. ++ -.++|.|+.. .+.+.+++.+.
T Consensus 13 ~g~Rl~~~~pK~l~pi---~g~pli~~~l~~l~~~---------------gi-~~iiiv~~~~-~~~i~~~~~~~----- 67 (459)
T PRK14355 13 KGTRMKSDLVKVMHPL---AGRPMVSWPVAAAREA---------------GA-GRIVLVVGHQ-AEKVREHFAGD----- 67 (459)
T ss_pred CCcccCCCCCceecee---CCccHHHHHHHHHHhc---------------CC-CeEEEEECCC-HHHHHHHhccC-----
Confidence 7999998899999988 5789999988877431 22 2467777754 55677777531
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccC-HHHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVAD-PTFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~D-P~~l 168 (378)
..+.+..|. .|-|.|+...+. ++.+. +.-+++.+.+.|+++....| -.++
T Consensus 68 --~~i~~~~~~---------------------~~~Gt~~al~~a-----~~~l~-~~~~~vlv~~gD~p~~~~~~i~~l~ 118 (459)
T PRK14355 68 --GDVSFALQE---------------------EQLGTGHAVACA-----APALD-GFSGTVLILCGDVPLLRAETLQGML 118 (459)
T ss_pred --CceEEEecC---------------------CCCCHHHHHHHH-----HHHhh-ccCCcEEEEECCccCcCHHHHHHHH
Confidence 123333332 123555432221 23332 22478999999997643333 2355
Q ss_pred HHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHHh
Q 017059 169 GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVA 248 (378)
Q Consensus 169 G~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~~ 248 (378)
-.+...++++.+-+.+...| ..-|++... .+|+ |++..|=|+....+ . .....|++.++|+-+++.+.+
T Consensus 119 ~~~~~~~~~~~v~~~~~~~~-~~~g~v~~d-~~g~--v~~~~ek~~~~~~~---~----~~~~~~~Giy~~~~~~l~~~l 187 (459)
T PRK14355 119 AAHRATGAAVTVLTARLENP-FGYGRIVRD-ADGR--VLRIVEEKDATPEE---R----SIREVNSGIYCVEAAFLFDAI 187 (459)
T ss_pred HHHHhcCCcEEEEEEEcCCC-CcCCEEEEc-CCCC--EEEEEEcCCCChhH---h----hccEEEEEEEEEeHHHHHHHH
Confidence 55656677766544443334 345666543 2454 44444322211110 0 012357888999998876655
Q ss_pred h
Q 017059 249 N 249 (378)
Q Consensus 249 ~ 249 (378)
+
T Consensus 188 ~ 188 (459)
T PRK14355 188 G 188 (459)
T ss_pred H
Confidence 3
No 42
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=95.57 E-value=0.41 Score=45.46 Aligned_cols=182 Identities=18% Similarity=0.218 Sum_probs=100.9
Q ss_pred cccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 9 IQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 9 ~qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
+.||||+- ..||.++|+ .|+++++..++.+... ++. -++|.++ ...+.+.++|.+..
T Consensus 8 G~gtRl~~~t~~~pK~llpv---~g~pii~~~l~~l~~~---------------gi~-~i~iv~~-~~~~~i~~~~~~~~ 67 (254)
T TIGR02623 8 GLGTRISEETHLRPKPMVEI---GGKPILWHIMKIYSHH---------------GIN-DFIICCG-YKGYVIKEYFANYF 67 (254)
T ss_pred ccccccCccccCCCcceeEE---CCEEHHHHHHHHHHHC---------------CCC-EEEEEcC-CCHHHHHHHHHhhh
Confidence 37999965 389999998 6788998777766321 211 2455555 45777888987643
Q ss_pred CCCCCCCcEEE-EEcCceeEEecCCccc-ccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCccccc
Q 017059 86 YFGLESDQVTF-FQQGTIPCVSKDGRFI-METPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVA 163 (378)
Q Consensus 86 ~Fgl~~~~v~~-f~Q~~~P~~~~~g~~~-l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~ 163 (378)
..+ .++.+ ++++.+.....+.+.. +. ......|-|.|+-+..... .+ +-+.+.+.+.|++. ..
T Consensus 68 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~gt~~al~~~~~-----~i---~~e~flv~~gD~i~--~~ 132 (254)
T TIGR02623 68 LHM---SDVTFHMADNTMEVHHKRVEPWRVT--LVDTGESTQTGGRLKRVRE-----YL---DDEAFCFTYGDGVA--DI 132 (254)
T ss_pred hcc---cCeeEEecccccccccccCCcccee--eeecCCcCCcHHHHHHHHH-----hc---CCCeEEEEeCCeEe--cC
Confidence 222 12322 2333333322221100 00 0011246787765543322 22 23567799999865 34
Q ss_pred CHH-HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHH
Q 017059 164 DPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLD 242 (378)
Q Consensus 164 DP~-~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~ 242 (378)
|.. ++-++...++++.+-++. +.+.-|++... +| .|.++.|=|.. . . ...|++++.|+-+
T Consensus 133 dl~~~~~~h~~~~~d~tl~~~~---~~~~yG~v~~d--~~--~V~~~~Ekp~~-------~---~--~~i~~Giyi~~~~ 193 (254)
T TIGR02623 133 DIKALIAFHRKHGKKATVTAVQ---PPGRFGALDLE--GE--QVTSFQEKPLG-------D---G--GWINGGFFVLNPS 193 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEec---CCCcccEEEEC--CC--eEEEEEeCCCC-------C---C--CeEEEEEEEEcHH
Confidence 443 666777778887654432 23456887653 34 45555553211 0 0 1358888999987
Q ss_pred HH
Q 017059 243 FL 244 (378)
Q Consensus 243 fl 244 (378)
.+
T Consensus 194 il 195 (254)
T TIGR02623 194 VL 195 (254)
T ss_pred HH
Confidence 76
No 43
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=95.54 E-value=0.29 Score=44.48 Aligned_cols=129 Identities=15% Similarity=0.179 Sum_probs=78.7
Q ss_pred cccccCC---CCCCCcceeccCCCCC-ChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhc
Q 017059 9 IQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGH 84 (378)
Q Consensus 9 ~qGtRLG---~~~pKg~~~i~l~~~k-sllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~ 84 (378)
+.||||. .+.||.++|+ .|+ ++++..++.+... ++. .++|.|+.. .+.+.+++.+.
T Consensus 7 G~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~~---------------gi~-~iivv~~~~-~~~i~~~~~~~ 66 (200)
T cd02508 7 GEGTRLSPLTKKRAKPAVPF---GGRYRLIDFPLSNMVNS---------------GIR-NVGVLTQYK-SRSLNDHLGSG 66 (200)
T ss_pred CCCcccchhhcCCcceeeEE---CCeeeeHHHHHHHHHHC---------------CCC-EEEEEeCCC-hHHHHHHHhCC
Confidence 3899996 4789999998 577 9999998887531 222 478888866 67788899876
Q ss_pred CCCCCCC--CcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccc
Q 017059 85 KYFGLES--DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 162 (378)
Q Consensus 85 ~~Fgl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~ 162 (378)
..+|++. ..+.+..+ + .......|-|.|+-..... +.+....-+.+.|.+.|++..
T Consensus 67 ~~~~~~~~~~~~~~~~~--------~-------~~~~~~~~~Gta~al~~a~-----~~i~~~~~~~~lv~~gD~v~~-- 124 (200)
T cd02508 67 KEWDLDRKNGGLFILPP--------Q-------QRKGGDWYRGTADAIYQNL-----DYIERSDPEYVLILSGDHIYN-- 124 (200)
T ss_pred CcccCCCCCCCEEEeCc--------c-------cCCCCCcccCcHHHHHHHH-----HHHHhCCCCEEEEecCCEEEe--
Confidence 5566541 11221110 0 0001235667777554332 233333347888999999542
Q ss_pred cCH-HHhHHHHhcCCcEE
Q 017059 163 ADP-TFLGYFIDKGVSAG 179 (378)
Q Consensus 163 ~DP-~~lG~~~~~~~~~~ 179 (378)
.|. .++-++.+++.++.
T Consensus 125 ~~~~~~l~~~~~~~~~~t 142 (200)
T cd02508 125 MDYREMLDFHIESGADIT 142 (200)
T ss_pred cCHHHHHHHHHHcCCCEE
Confidence 333 35666666666654
No 44
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=95.47 E-value=0.51 Score=46.20 Aligned_cols=189 Identities=18% Similarity=0.141 Sum_probs=98.4
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||. ...||-|+|| -||.+++..++.+... ++. -++|.|+. ..+.+.+||....
T Consensus 13 ~GTRL~PlT~~~PKpLvpV---~gkPiI~~vl~~l~~~---------------Gi~-~ivivv~~-~~~~i~~~~~~~~- 71 (297)
T TIGR01105 13 LGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVAA---------------GIK-EIVLVTHA-SKNAVENHFDTSY- 71 (297)
T ss_pred CCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHHC---------------CCC-EEEEEecC-ChHHHHHHHhchH-
Confidence 899998 4789999998 5899999998887531 222 46777776 6667899986421
Q ss_pred CCCCC-------CcEEEEEcCceeEEecCCcccccCCCccccccCCCchh-hHHhhcCcHHHHHHHCCceEEEEEecCCC
Q 017059 87 FGLES-------DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGV-YSALKSSKLLEDMATRGIKYIDCYGVDNA 158 (378)
Q Consensus 87 Fgl~~-------~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i-~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~ 158 (378)
.+.. .++.=+-+...+. +-++ .......|-|.|+- +.++. .+ |-+-..+.+.|++
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~---~~~i----~~~~q~~~lGtg~Av~~a~~------~l---~~~~flvv~gD~l 134 (297)
T TIGR01105 72 -ELESLLEQRVKRQLLAEVQSICPP---GVTI----MNVRQAQPLGLGHSILCARP------VV---GDNPFVVVLPDII 134 (297)
T ss_pred -HHHHHHHHhcchhhhhhhhhcCCC---CceE----EEeeCCCcCchHHHHHHHHH------Hh---CCCCEEEEECCee
Confidence 1100 0000000000000 0000 11122356788874 44331 22 1133556668885
Q ss_pred cccc-------cCH-HHhHHHHhcCCcEEEEEecccCCCccceeEEEe---cCCCCe-EEEEecCCChhhhhhccCCCCc
Q 017059 159 LVRV-------ADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR---GKGGPL-TVVEYSELDPSLASAINQETGR 226 (378)
Q Consensus 159 l~~~-------~DP-~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~---~~~g~~-~vvEYsel~~~~~~~~~~~~g~ 226 (378)
. .. .|- .++-++.+.+..+.+ +.+......+-|++... +.+|+. .|+|+.|=|..-. ...
T Consensus 135 ~-~~~~~~~~~~~l~~li~~~~~~~~~~~~-~~~~~~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~------~~~ 206 (297)
T TIGR01105 135 I-DDATADPLRYNLAAMIARFNETGRSQVL-AKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQ------TLD 206 (297)
T ss_pred c-cccccccchhHHHHHHHHHHHhCCcEEE-EEEcCCCCccceEEEecccccCCCCeeeEeEEEECCCCcc------cCC
Confidence 4 21 111 355555555655432 22221124567888763 124543 6777766442110 001
Q ss_pred cccccccceeeeEeHHHHHH
Q 017059 227 LRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 227 l~f~~gNi~~~~~~l~fl~~ 246 (378)
+ ...|+.+++|+-+.++.
T Consensus 207 s--~~~~~GiYi~~~~i~~~ 224 (297)
T TIGR01105 207 S--DLMAVGRYVLSADIWAE 224 (297)
T ss_pred c--CEEEEEEEEECHHHHHH
Confidence 1 23688899999886654
No 45
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=95.41 E-value=0.4 Score=49.29 Aligned_cols=202 Identities=17% Similarity=0.249 Sum_probs=110.6
Q ss_pred ccccCC---CCCCCcceeccCCCCC-ChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~k-sllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
.||||. ...||.|+|+ .|+ .+++..++.+... ++. -++|.|.. ..+.+.++|++..
T Consensus 13 ~gtRl~PlT~~~PK~llpv---~g~~plId~~L~~l~~~---------------Gi~-~i~iv~~~-~~~~i~~~l~~~~ 72 (436)
T PLN02241 13 AGTRLFPLTKRRAKPAVPI---GGNYRLIDIPMSNCINS---------------GIN-KIYVLTQF-NSASLNRHLSRAY 72 (436)
T ss_pred CCCcchhhhcCCcccceEe---CCcceEehHHHHHHHhC---------------CCC-EEEEEecc-CHHHHHHHHhccC
Confidence 799998 6899999988 454 8999988877431 222 25666654 6677999998543
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
+|+.... +.++.+..+.. .+.. .-...|-|.|+-...... .+++...++-+++.+.+-|++. ..|.
T Consensus 73 ~~~~~~~----~~~~~~~i~~~-----~q~~-~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~gD~v~--~~dl 138 (436)
T PLN02241 73 NFGNGGN----FGDGFVEVLAA-----TQTP-GEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSGDHLY--RMDY 138 (436)
T ss_pred CCCCCcc----cCCCCEEEcCC-----cccC-CCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecCCeEE--ccCH
Confidence 3442111 11111111100 0000 011257888876644321 2332222235789999999965 3454
Q ss_pred -HHhHHHHhcCCcEEEEEec--ccCCCccceeEEEecCCCCeEEEEecCCChhhhh---hc-------cCCCCccccccc
Q 017059 166 -TFLGYFIDKGVSAGAKVVR--KAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLAS---AI-------NQETGRLRFCWS 232 (378)
Q Consensus 166 -~~lG~~~~~~~~~~~kvv~--K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~---~~-------~~~~g~l~f~~g 232 (378)
.++-++.++++++.+-+.+ +.. .+.-|++... .+| .|+++.|-|..... ++ +++.-.......
T Consensus 139 ~~ll~~h~~~~a~~ti~~~~v~~~~-~~~ygvv~~d-~~~--~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
T PLN02241 139 MDFVQKHRESGADITIACLPVDESR-ASDFGLMKID-DTG--RIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIA 214 (436)
T ss_pred HHHHHHHHHcCCCEEEEEEecchhh-cCcceEEEEC-CCC--CEEEEEECCCCcccccccccccccccccccccccceEE
Confidence 3677788888886543322 111 2566887763 234 46677665532110 00 000000011236
Q ss_pred cceeeeEeHHHHHHHhh
Q 017059 233 NVCLHMFTLDFLNQVAN 249 (378)
Q Consensus 233 Ni~~~~~~l~fl~~~~~ 249 (378)
|+.+..|+-+.|.++++
T Consensus 215 ~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 215 SMGIYVFKKDVLLKLLR 231 (436)
T ss_pred EeEEEEEEHHHHHHHHH
Confidence 88899999998876654
No 46
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=95.07 E-value=0.63 Score=42.92 Aligned_cols=168 Identities=15% Similarity=0.114 Sum_probs=91.7
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
+||||+- ..||.++|+ .|+++++..++.+... ++. .++|.|.. ..+...+++.+.
T Consensus 8 ~g~Rl~~lt~~~pK~l~~~---~g~~li~~~l~~l~~~---------------gi~-~i~vv~~~-~~~~~~~~~~~~-- 65 (229)
T cd02523 8 RGSRLRPLTEDRPKCLLEI---NGKPLLERQIETLKEA---------------GID-DIVIVTGY-KKEQIEELLKKY-- 65 (229)
T ss_pred CccccchhhCCCCceeeeE---CCEEHHHHHHHHHHHC---------------CCc-eEEEEecc-CHHHHHHHHhcc--
Confidence 7999974 469999988 5789999888876431 222 36677775 566777777642
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT 166 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~ 166 (378)
. .+.+..++. +.|.|.++-..+. ++.+ -+++.+.+.|++. ++.
T Consensus 66 ~-----~~~~~~~~~-------------------~~~~g~~~s~~~~-----~~~~----~~~~lv~~~D~~~----~~~ 108 (229)
T cd02523 66 P-----NIKFVYNPD-------------------YAETNNIYSLYLA-----RDFL----DEDFLLLEGDVVF----DPS 108 (229)
T ss_pred C-----CeEEEeCcc-------------------hhhhCcHHHHHHH-----HHHc----CCCEEEEeCCEec----CHH
Confidence 1 233222210 1244554322222 2222 2689999999964 556
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
++-.+.+.+.+..+-+.+ ....+.....+... ++ -.+++..+-+.... . ....|++...|+-+.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~v~~~~~k~~~~~------~----~~~~~~Giy~~~~~~~~~ 175 (229)
T cd02523 109 ILERLLSSPADNAILVDK-KTKEWEDEYVKDLD-DA-GVLLGIISKAKNLE------E----IQGEYVGISKFSPEDADR 175 (229)
T ss_pred HHHHHHcCCCCCeEEEcc-Ccccccccceeeec-Cc-cceEeecccCCCcc------h----hceEEEeEEEECHHHHHH
Confidence 777777777777654443 11222222222221 21 12333322221110 0 012577788899888776
Q ss_pred Hhh
Q 017059 247 VAN 249 (378)
Q Consensus 247 ~~~ 249 (378)
+.+
T Consensus 176 l~~ 178 (229)
T cd02523 176 LAE 178 (229)
T ss_pred HHH
Confidence 543
No 47
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=95.04 E-value=1 Score=46.32 Aligned_cols=195 Identities=16% Similarity=0.192 Sum_probs=104.8
Q ss_pred ccccCC---CCCCCcceeccCCCCC-ChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~k-sllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
.||||. .+.||.|+|+ .|+ ++++..++++... ++. .++|.|+. ..+.+++++.+..
T Consensus 13 ~GtRL~PLT~~~PK~Llpi---~gk~plI~~~L~~l~~~---------------Gi~-~vivv~~~-~~~~i~~~l~~~~ 72 (429)
T PRK02862 13 AGTRLYPLTKLRAKPAVPL---AGKYRLIDIPISNCINS---------------GIN-KIYVLTQF-NSASLNRHISQTY 72 (429)
T ss_pred CCCcchhhhcCCcceeeEE---CCeeEEeHHHHHHHHHC---------------CCC-EEEEEecC-CHHHHHHHHhcCc
Confidence 899998 3899999998 577 9999999877431 222 46777775 7778999998643
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
+++...... +..+..+ ....-...+-|.|+-.... ++.+....-+++.|.+-|++. . .|.
T Consensus 73 ~~~~~~~g~-------~~i~~~~------~~~~~~~~~lGTa~al~~a-----~~~l~~~~~~~~lVl~gD~l~-~-~dl 132 (429)
T PRK02862 73 NFDGFSGGF-------VEVLAAQ------QTPENPSWFQGTADAVRKY-----LWHFQEWDVDEYLILSGDQLY-R-MDY 132 (429)
T ss_pred CccccCCCE-------EEEeCCc------ccCCCCccccCcHHHHHHH-----HHHHHhcCCCEEEEecCCEEE-e-CCH
Confidence 222111110 0011000 0000001225777654433 233433334688999999965 2 444
Q ss_pred -HHhHHHHhcCCcEEEEEecccCC-CccceeEEEecCCCCeEEEEecCCChhh-hhhc---------cC--CCCcccccc
Q 017059 166 -TFLGYFIDKGVSAGAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELDPSL-ASAI---------NQ--ETGRLRFCW 231 (378)
Q Consensus 166 -~~lG~~~~~~~~~~~kvv~K~~~-~EkvGvl~~~~~~g~~~vvEYsel~~~~-~~~~---------~~--~~g~l~f~~ 231 (378)
.++-++.+.++++.+-+.+...+ ...-|++... .+| .+.++.|-|... .... ++ ...... .
T Consensus 133 ~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d-~~g--~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~--~ 207 (429)
T PRK02862 133 RLFVQHHRETGADITLAVLPVDEKDASGFGLMKTD-DDG--RITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPY--L 207 (429)
T ss_pred HHHHHHHHHcCCCEEEEEEecChhhcccceEEEEC-CCC--cEEEEEECCCccccchhcccccccccccccCCCCce--E
Confidence 36777777788765433222111 2245777553 244 344444433211 0000 00 000111 2
Q ss_pred ccceeeeEeHHHHHHHhh
Q 017059 232 SNVCLHMFTLDFLNQVAN 249 (378)
Q Consensus 232 gNi~~~~~~l~fl~~~~~ 249 (378)
.|+.++.|+-+.|.+++.
T Consensus 208 ~n~Giyi~~~~vl~~~l~ 225 (429)
T PRK02862 208 ASMGIYVFSRDVLFDLLN 225 (429)
T ss_pred EEEEEEEEcHHHHHHHHH
Confidence 588889999999977664
No 48
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=94.96 E-value=0.92 Score=46.54 Aligned_cols=190 Identities=12% Similarity=0.169 Sum_probs=106.5
Q ss_pred ccccCCC---CCCCcceeccCCCCCC-hhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKS-LFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ks-llql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
.||||.- ..||.|+|+ .|+. +++..++++... ++. .++|.|.. ..+.++++|.+.
T Consensus 25 ~GtRl~pLT~~~PK~llpv---~gkp~lI~~~l~~l~~~---------------Gi~-~i~vv~~~-~~~~i~~~~~~~- 83 (425)
T PRK00725 25 RGSRLKELTDKRAKPAVYF---GGKFRIIDFALSNCINS---------------GIR-RIGVLTQY-KAHSLIRHIQRG- 83 (425)
T ss_pred CCCcchhhhCCCcceeEEE---CCEEEEhHHHHHHHHHC---------------CCC-eEEEEecC-CHHHHHHHHHhh-
Confidence 8999986 799999998 5785 999998887531 222 36777764 577788898752
Q ss_pred CCCCCCC----cEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCccc
Q 017059 86 YFGLESD----QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 161 (378)
Q Consensus 86 ~Fgl~~~----~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~ 161 (378)
+++.+. .+.++.+. ........|-|.|+-.... ++.+....-+++.|.+.|++..
T Consensus 84 -~~~~~~~~~~~i~i~~~~--------------~~~~~e~~~lGTa~al~~a-----~~~l~~~~~d~~lVl~gD~l~~- 142 (425)
T PRK00725 84 -WSFFREELGEFVDLLPAQ--------------QRVDEENWYRGTADAVYQN-----LDIIRRYDPKYVVILAGDHIYK- 142 (425)
T ss_pred -hcccccCCCCeEEEeCCc--------------ccCCCCccccCcHHHHHHH-----HHHHHhcCCCEEEEecCCeEec-
Confidence 232111 11111110 0111123466776654432 3344333347899999999652
Q ss_pred ccCH-HHhHHHHhcCCcEEEEEecc-cCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeE
Q 017059 162 VADP-TFLGYFIDKGVSAGAKVVRK-AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 239 (378)
Q Consensus 162 ~~DP-~~lG~~~~~~~~~~~kvv~K-~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~ 239 (378)
.|. .++-++...++++.+-+.+. ......-|++... .+|+ |.++.|=|..... . +.. ......|+.++.|
T Consensus 143 -~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d-~~~~--V~~~~EKp~~~~~-~-~~~--~~~~l~n~GIYi~ 214 (425)
T PRK00725 143 -MDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVD-ENDR--ITAFVEKPANPPA-M-PGD--PDKSLASMGIYVF 214 (425)
T ss_pred -cCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEEC-CCCC--EEEEEECCCCccc-c-ccC--ccceEEEeeEEEE
Confidence 343 36777777888776433221 1123355887654 2343 4455443321100 0 000 0112368889999
Q ss_pred eHHHHHHHhh
Q 017059 240 TLDFLNQVAN 249 (378)
Q Consensus 240 ~l~fl~~~~~ 249 (378)
+-++|.+++.
T Consensus 215 ~~~~L~~~L~ 224 (425)
T PRK00725 215 NADYLYELLE 224 (425)
T ss_pred eHHHHHHHHH
Confidence 9998876553
No 49
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=94.77 E-value=0.83 Score=46.61 Aligned_cols=169 Identities=17% Similarity=0.158 Sum_probs=91.1
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+|||||.+.||.++|+ .|+++++..++++... +. -.++|.++.. .+.+.+++.+.
T Consensus 10 ~g~R~~~~~pK~l~~i---~gkpli~~~l~~l~~~---------------g~-~~iiiv~~~~-~~~i~~~~~~~----- 64 (451)
T TIGR01173 10 KGTRMKSDLPKVLHPL---AGKPMLEHVIDAARAL---------------GP-QKIHVVYGHG-AEQVRKALANR----- 64 (451)
T ss_pred CCcccCCCCchhhcee---CCccHHHHHHHHHHhC---------------CC-CeEEEEECCC-HHHHHHHhcCC-----
Confidence 8999998889999987 6899999988877431 22 2467777765 55677777642
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
++.++.|. .|.|.++ ++.++ +.+. .-+++.+.+.|.++. +|..+
T Consensus 65 ---~i~~~~~~---------------------~~~G~~~ai~~a~------~~l~--~~~~~lv~~~D~p~i---~~~~~ 109 (451)
T TIGR01173 65 ---DVNWVLQA---------------------EQLGTGHAVLQAL------PFLP--DDGDVLVLYGDVPLI---SAETL 109 (451)
T ss_pred ---CcEEEEcC---------------------CCCchHHHHHHHH------HhcC--CCCcEEEEECCcCCc---CHHHH
Confidence 23333321 1224443 33333 2221 126899999999873 34433
Q ss_pred HHHHh--cCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 169 GYFID--KGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 169 G~~~~--~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
--+.+ .....++-+.+ .....+.|++... ++|+ |.++.|=++....+ . .+ ...|++..+|+-++|.+
T Consensus 110 ~~l~~~~~~~~~~~~~~~-~~~~~~~g~v~~d-~~g~--v~~~~ek~~~~~~~---~--~~--~~~~~G~y~~~~~~l~~ 178 (451)
T TIGR01173 110 ERLLEAHRQNGITLLTAK-LPDPTGYGRIIRE-NDGK--VTAIVEDKDANAEQ---K--AI--KEINTGVYVFDGAALKR 178 (451)
T ss_pred HHHHHHHhhCCEEEEEEe-cCCCCCCCEEEEc-CCCC--EEEEEEcCCCChHH---h--cC--cEEEEEEEEEeHHHHHH
Confidence 22222 11123222222 2223346776543 3454 44443322211110 0 01 12477789999998766
Q ss_pred Hhh
Q 017059 247 VAN 249 (378)
Q Consensus 247 ~~~ 249 (378)
+++
T Consensus 179 ~l~ 181 (451)
T TIGR01173 179 WLP 181 (451)
T ss_pred HHH
Confidence 553
No 50
>PRK10122 GalU regulator GalF; Provisional
Probab=94.58 E-value=1.3 Score=43.19 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=98.2
Q ss_pred cccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 9 IQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 9 ~qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
+.||||. ...||.|+|| -||.+++..++.+... ++. .++|+|.. ..+.+.+||.. +
T Consensus 12 G~GtRl~PlT~~~PK~llpi---~gkpiI~~~l~~l~~~---------------Gi~-~i~iv~~~-~~~~i~~~~~~-~ 70 (297)
T PRK10122 12 GLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVAA---------------GIK-EIVLVTHA-SKNAVENHFDT-S 70 (297)
T ss_pred cCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHHC---------------CCC-EEEEEcCC-ChHHHHHHHhc-c
Confidence 3899998 5789999998 5789999988887531 222 36777764 67778888863 2
Q ss_pred CCCCC---------------------CCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHH
Q 017059 86 YFGLE---------------------SDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT 144 (378)
Q Consensus 86 ~Fgl~---------------------~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~ 144 (378)
++++ .-++.+..| ..|-|.|+-.... .+.+
T Consensus 71 -~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~q---------------------~~~lGtg~al~~a-----~~~l-- 121 (297)
T PRK10122 71 -YELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQ---------------------GQPLGLGHSILCA-----RPAI-- 121 (297)
T ss_pred -hhHHHHHhhcchhhhHHhhhhccCCCceEEEeec---------------------CCcCchHHHHHHH-----HHHc--
Confidence 2221 011222222 2356666644333 2222
Q ss_pred CCceEEEEEecCCCcccc-------cCH-HHhHHHHhcCCcEEEEEecccCCCccceeEEEec---CCCCe-EEEEecCC
Q 017059 145 RGIKYIDCYGVDNALVRV-------ADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG---KGGPL-TVVEYSEL 212 (378)
Q Consensus 145 ~Gi~yi~v~~vDN~l~~~-------~DP-~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~---~~g~~-~vvEYsel 212 (378)
.+-+++ +.+.||+. .. .|- .++-++.+.+.++.+-..... ...+-|++...+ .+|.. .|+++.|=
T Consensus 122 ~~~~fv-vi~gD~l~-~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EK 198 (297)
T PRK10122 122 GDNPFV-VVLPDVVI-DDASADPLRYNLAAMIARFNETGRSQVLAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEK 198 (297)
T ss_pred CCCCEE-EEECCeec-cCccccccchhHHHHHHHHHHhCCcEEEEEECCC-CCCCceEEEecCcccCCCCeeeEEEEEEC
Confidence 123454 55588864 21 121 256667777776532221111 334668887631 24543 66676654
Q ss_pred ChhhhhhccCCCCccccccccceeeeEeHHHHHHH
Q 017059 213 DPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQV 247 (378)
Q Consensus 213 ~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~ 247 (378)
|...... .+ ...|+..+.|+-+.++.+
T Consensus 199 p~~~~~~------~s--~~~~~GiYi~~~~i~~~l 225 (297)
T PRK10122 199 PDQPQTL------DS--DLMAVGRYVLSADIWPEL 225 (297)
T ss_pred CCCcccC------Cc--cEEEEEEEEECHHHHHHH
Confidence 4221000 01 136888899998866544
No 51
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=94.46 E-value=1.1 Score=44.57 Aligned_cols=191 Identities=16% Similarity=0.238 Sum_probs=99.8
Q ss_pred cccccCCC---CCCCcceeccCCCCC-ChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhc
Q 017059 9 IQGTRLGS---SDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGH 84 (378)
Q Consensus 9 ~qGtRLG~---~~pKg~~~i~l~~~k-sllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~ 84 (378)
++||||+- +.||.|+|+ .|+ ++++..++.+... +.. .++|.|... .+.+.++|.+.
T Consensus 7 G~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~~---------------gi~-~i~iv~~~~-~~~i~~~~~~~ 66 (361)
T TIGR02091 7 GRGSRLSPLTKRRAKPAVPF---GGKYRIIDFPLSNCINS---------------GIR-RIGVLTQYK-SHSLNRHIQRG 66 (361)
T ss_pred CCCCccchhhhCCcccccee---cceeeEeeehhhhhhhc---------------CCc-eEEEEeccC-hHHHHHHHHhc
Confidence 48999983 689999988 577 6999988877531 222 367777654 45688888752
Q ss_pred CCCCCCC---CcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCccc
Q 017059 85 KYFGLES---DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 161 (378)
Q Consensus 85 ~~Fgl~~---~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~ 161 (378)
+++.. ..+.+..+. ....-...|.|.|+...+. ++.+....-+++.+.+.|++..
T Consensus 67 --~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~gD~l~~- 124 (361)
T TIGR02091 67 --WDFDGFIDGFVTLLPAQ--------------QRESGTDWYQGTADAVYQN-----LDLIEDYDPEYVLILSGDHIYK- 124 (361)
T ss_pred --cCccCccCCCEEEeCCc--------------ccCCCCccccCcHHHHHHH-----HHHHHhcCCCEEEEecCCEEEc-
Confidence 33321 112211100 0001122356766543322 2233223346889999998652
Q ss_pred ccCH-HHhHHHHhcCCcEEEEEecc-cCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeE
Q 017059 162 VADP-TFLGYFIDKGVSAGAKVVRK-AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 239 (378)
Q Consensus 162 ~~DP-~~lG~~~~~~~~~~~kvv~K-~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~ 239 (378)
.|. .++-.+..++.++.+-+.+. ....+..|++... .+| .|.++.|=|...... .+.......|+.++.|
T Consensus 125 -~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d-~~~--~v~~~~ekp~~~~~~----~~~~~~~~~~~Giyi~ 196 (361)
T TIGR02091 125 -MDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVD-EDG--RIVDFEEKPANPPSI----PGMPDFALASMGIYIF 196 (361)
T ss_pred -CCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEEC-CCC--CEEEEEECCCCcccc----cccccccEEeeeEEEE
Confidence 232 24555555666544322221 1123456787653 234 355555432111000 0000111368889999
Q ss_pred eHHHHHHHhh
Q 017059 240 TLDFLNQVAN 249 (378)
Q Consensus 240 ~l~fl~~~~~ 249 (378)
+-+.+.+.+.
T Consensus 197 ~~~~l~~~l~ 206 (361)
T TIGR02091 197 DKDVLKELLE 206 (361)
T ss_pred cHHHHHHHHH
Confidence 9988865554
No 52
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=94.41 E-value=1.7 Score=44.59 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=89.9
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||+...||.++|+ .|+++++..++++... +.. .+++.++.. .+.+.+++.+
T Consensus 12 ~g~Rl~~~~pK~ll~i---~Gkpli~~~l~~l~~~---------------gi~-~iivvv~~~-~~~i~~~~~~------ 65 (458)
T PRK14354 12 KGTRMKSKLPKVLHKV---CGKPMVEHVVDSVKKA---------------GID-KIVTVVGHG-AEEVKEVLGD------ 65 (458)
T ss_pred CCcccCCCCChhhCEe---CCccHHHHHHHHHHhC---------------CCC-eEEEEeCCC-HHHHHHHhcC------
Confidence 7999998899999988 5789999999887421 221 355555543 4445555442
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-HH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP-TF 167 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP-~~ 167 (378)
.+.+..| + .+.|.++ ++.++ +.+. ..-+++.+.+.|+++....|. .+
T Consensus 66 ---~~~~~~~----------------~-----~~~g~~~al~~a~------~~l~-~~~d~vlv~~~D~p~i~~~~l~~l 114 (458)
T PRK14354 66 ---RSEFALQ----------------E-----EQLGTGHAVMQAE------EFLA-DKEGTTLVICGDTPLITAETLKNL 114 (458)
T ss_pred ---CcEEEEc----------------C-----CCCCHHHHHHHHH------HHhc-ccCCeEEEEECCccccCHHHHHHH
Confidence 1111111 0 1334433 33333 2232 213689999999987433221 23
Q ss_pred hHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCe-EEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 168 LGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 168 lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~-~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
+-++...+++..+-+.+...+ ..-|++... .+|+. .++|.....+.. ......|+...+|+-++|.+
T Consensus 115 i~~~~~~~~~~t~~~~~~~~~-~~~g~v~~d-~~~~V~~~~ek~~~~~~~----------~~~~~~~~Giy~f~~~~l~~ 182 (458)
T PRK14354 115 IDFHEEHKAAATILTAIAENP-TGYGRIIRN-ENGEVEKIVEQKDATEEE----------KQIKEINTGTYCFDNKALFE 182 (458)
T ss_pred HHHHHhcCCceEEEEEEcCCC-CCceEEEEc-CCCCEEEEEECCCCChHH----------hcCcEEEEEEEEEEHHHHHH
Confidence 444444556654333222222 335665442 34432 234433221110 01123688889999887766
Q ss_pred Hhh
Q 017059 247 VAN 249 (378)
Q Consensus 247 ~~~ 249 (378)
.++
T Consensus 183 ~l~ 185 (458)
T PRK14354 183 ALK 185 (458)
T ss_pred HHH
Confidence 553
No 53
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=94.23 E-value=0.43 Score=43.96 Aligned_cols=124 Identities=10% Similarity=0.086 Sum_probs=74.5
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||+ .+.||.++|+ .|+++++..++.+.+. +.. .++|.++....+.+++++++..+
T Consensus 10 ~g~R~~plt~~~pK~Llpv---~g~pli~~~l~~l~~~---------------g~~-~iivv~~~~~~~~i~~~l~~~~~ 70 (214)
T cd04198 10 GGSRLYPLTDNIPKALLPV---ANKPMIWYPLDWLEKA---------------GFE-DVIVVVPEEEQAEISTYLRSFPL 70 (214)
T ss_pred CCCcCCccccCCCcccCEE---CCeeHHHHHHHHHHHC---------------CCC-eEEEEECHHHHHHHHHHHHhccc
Confidence 699997 4789999998 4889999988887531 111 36777776555678888876421
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP- 165 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP- 165 (378)
.........+. ....+.|.|+......+. + .+.+.|.+.|.+.. .|.
T Consensus 71 -~~~~~~~~~~~--------------------~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i~~--~~l~ 118 (214)
T cd04198 71 -NLKQKLDEVTI--------------------VLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLITD--LPLI 118 (214)
T ss_pred -ccCcceeEEEe--------------------cCCCCcChHHHHHHHHhh-----c----CCCEEEEeCccccc--cCHH
Confidence 10000000000 012367778877766542 1 34577888886553 333
Q ss_pred HHhHHHHhcCCcEEEEEec
Q 017059 166 TFLGYFIDKGVSAGAKVVR 184 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~ 184 (378)
.++-.+...++.+.+-+.+
T Consensus 119 ~~l~~h~~~~~~~t~~~~~ 137 (214)
T cd04198 119 ELVDLHRSHDASLTVLLYP 137 (214)
T ss_pred HHHHHHhccCCcEEEEEec
Confidence 3556666677777654433
No 54
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.20 E-value=0.12 Score=48.91 Aligned_cols=67 Identities=16% Similarity=0.356 Sum_probs=52.4
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+.|||||-+.||+++.+ .|++++..++++|... + .--++|.|+....+-..+|+.++++
T Consensus 12 G~GsRlg~~~PK~Lvev---~gr~ii~~~i~~L~~~---------------g-i~e~vvV~~g~~~~lve~~l~~~~~-- 70 (239)
T COG1213 12 GFGSRLGPDIPKALVEV---GGREIIYRTIENLAKA---------------G-ITEFVVVTNGYRADLVEEFLKKYPF-- 70 (239)
T ss_pred ccccccCCCCCchhhhc---CCeEeHHHHHHHHHHc---------------C-CceEEEEeccchHHHHHHHHhcCCc--
Confidence 48999999999999866 3999999988887431 1 2258999999999999999998774
Q ss_pred CCCCcEEEEEcC
Q 017059 89 LESDQVTFFQQG 100 (378)
Q Consensus 89 l~~~~v~~f~Q~ 100 (378)
++.|+..+
T Consensus 71 ----~~~iv~N~ 78 (239)
T COG1213 71 ----NAKIVINS 78 (239)
T ss_pred ----ceEEEeCC
Confidence 45555543
No 55
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=93.62 E-value=1.7 Score=40.94 Aligned_cols=192 Identities=18% Similarity=0.153 Sum_probs=95.8
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||+- ..||.++|+ .|+++++..++.+.. .++. .++|+|+.. .+.+.++|.+...
T Consensus 10 ~gtRl~plt~~~pK~llpi---~g~pli~~~l~~l~~---------------~gi~-~v~iv~~~~-~~~i~~~~~~~~~ 69 (260)
T TIGR01099 10 LGTRFLPATKAIPKEMLPI---VDKPLIQYVVEEAVE---------------AGIE-DILIVTGRG-KRAIEDHFDTSYE 69 (260)
T ss_pred CcccCCCcccCCCceeEEE---CCEEHHHHHHHHHHh---------------CCCC-EEEEEeCCc-HHHHHHHhcccHH
Confidence 8999975 789999998 478999998887642 1222 467778765 5668888863211
Q ss_pred CCCC---CCcEEEEEcCc--eeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCccc
Q 017059 87 FGLE---SDQVTFFQQGT--IPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 161 (378)
Q Consensus 87 Fgl~---~~~v~~f~Q~~--~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~ 161 (378)
++.. ...+..+.+-. .|-+ .+.. .....|.|.|+-..+. .+.+ +-+.+.|.+.|++...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~----~i~~----~~~~~~~G~~~al~~~-----~~~~---~~~~~lv~~gD~~~~~ 133 (260)
T TIGR01099 70 LEHQLEKRGKEELLKEVRSISPLA----TIFY----VRQKEQKGLGHAVLCA-----EPFV---GDEPFAVILGDDIVVS 133 (260)
T ss_pred HHHHHHhhhhHHHHHHhhhccccc----eEEE----EecCCCCCHHHHHHHH-----HHhh---CCCCEEEEeccceecC
Confidence 1000 00000000000 0000 0000 0112355666643322 2222 3356788889999843
Q ss_pred c-cC-HHHhHHHHhcCCcEE-EEEecccCCCccceeEEEecC-CCCeEEEEecCCChhhhhhccCCCCccccccccceee
Q 017059 162 V-AD-PTFLGYFIDKGVSAG-AKVVRKAYPQEKVGVFVRRGK-GGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 237 (378)
Q Consensus 162 ~-~D-P~~lG~~~~~~~~~~-~kvv~K~~~~EkvGvl~~~~~-~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~ 237 (378)
. .| -.++-++...++++. ..-++.. ...+-|++..... ++.-.|+++.|=|... .. .. ...|++++
T Consensus 134 ~~~~~~~l~~~~~~~~~~ii~~~~~~~~-~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~----~~-~~----~~~~~Giy 203 (260)
T TIGR01099 134 EEPALKQMIDLYEKYGCSIIAVEEVPKE-EVSKYGVIDGEGVEEGLYEIKDMVEKPKPE----EA-PS----NLAIVGRY 203 (260)
T ss_pred CcHHHHHHHHHHHHhCCCEEEEEECChh-hcccCceEEeccccCCceeEEEEEECCCCC----CC-CC----ceEEEEEE
Confidence 2 01 235666666777752 2222211 2235677655310 1112455554433210 00 00 13577889
Q ss_pred eEeHHHHHHH
Q 017059 238 MFTLDFLNQV 247 (378)
Q Consensus 238 ~~~l~fl~~~ 247 (378)
+|+-+.+..+
T Consensus 204 i~~~~~~~~l 213 (260)
T TIGR01099 204 VLTPDIFDLL 213 (260)
T ss_pred ECCHHHHHHH
Confidence 9998776655
No 56
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=93.28 E-value=4 Score=42.56 Aligned_cols=185 Identities=14% Similarity=0.122 Sum_probs=95.3
Q ss_pred cccccCC----CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhc
Q 017059 9 IQGTRLG----SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGH 84 (378)
Q Consensus 9 ~qGtRLG----~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~ 84 (378)
+.||||+ ...||-++|+ ..++|++|..++++..+ +.. ..+|.|+..-.....+.+++
T Consensus 9 G~GtRl~PlS~~~~PK~~l~l--~g~~~ll~~tl~~l~~~---------------~~~-~iviv~~~~~~~~~~~~l~~- 69 (468)
T TIGR01479 9 GSGTRLWPLSRELYPKQFLAL--VGDLTMLQQTLKRLAGL---------------PCS-SPLVICNEEHRFIVAEQLRE- 69 (468)
T ss_pred cccccCCccccCCCCCceeEc--CCCCcHHHHHHHHHhcC---------------CCc-CcEEecCHHHHHHHHHHHHH-
Confidence 3899998 3479999977 34599999999987532 111 34577766544455666654
Q ss_pred CCCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHH--CCceEEEEEecCCCcccc
Q 017059 85 KYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT--RGIKYIDCYGVDNALVRV 162 (378)
Q Consensus 85 ~~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~--~Gi~yi~v~~vDN~l~~~ 162 (378)
+|++.. .+..|+ .|-|.|+.-... ...+.+ .+=.++.|.+.|+++.
T Consensus 70 --~~~~~~--~~i~Ep---------------------~~~gTa~ai~~a-----a~~~~~~~~~~~~vlVl~~D~~i~-- 117 (468)
T TIGR01479 70 --IGKLAS--NIILEP---------------------VGRNTAPAIALA-----ALLAARRNGEDPLLLVLAADHVIT-- 117 (468)
T ss_pred --cCCCcc--eEEecc---------------------cccCchHHHHHH-----HHHHHHHHCCCcEEEEecCceeec--
Confidence 232211 122221 222333222110 011222 2345789999999874
Q ss_pred cCH-HH---hHHH---HhcCCcEEEEEecccCCCccceeEEEecC-C--CCeEEEEecCCChhh-hhhccCCCCcccccc
Q 017059 163 ADP-TF---LGYF---IDKGVSAGAKVVRKAYPQEKVGVFVRRGK-G--GPLTVVEYSELDPSL-ASAINQETGRLRFCW 231 (378)
Q Consensus 163 ~DP-~~---lG~~---~~~~~~~~~kvv~K~~~~EkvGvl~~~~~-~--g~~~vvEYsel~~~~-~~~~~~~~g~l~f~~ 231 (378)
|+ .| +-.+ .+.+..+.+-+. .+.|.-.-|.+..... + +...|..+-|=|+.. +...- .+|.. ++
T Consensus 118 -~~~~f~~~l~~~~~~a~~~~lvtlgi~-p~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l-~~g~~-~w- 192 (468)
T TIGR01479 118 -DEDAFQAAVKLAMPAAAEGKLVTFGIV-PTHPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYL-ESGDY-YW- 192 (468)
T ss_pred -CHHHHHHHHHHHHHHHhcCCEEEEEec-CCCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHH-hcCCe-EE-
Confidence 33 22 2222 233444434333 3446667888875311 1 223443343333321 11111 12322 34
Q ss_pred ccceeeeEeHHHHHHHhhc
Q 017059 232 SNVCLHMFTLDFLNQVANG 250 (378)
Q Consensus 232 gNi~~~~~~l~fl~~~~~~ 250 (378)
|..++.++.+.|.+.+.+
T Consensus 193 -NsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 193 -NSGMFLFRASRYLAELKK 210 (468)
T ss_pred -EeeEEEEEHHHHHHHHHH
Confidence 888999998888766653
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=92.81 E-value=3.5 Score=38.19 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=89.6
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.|+||| ||.++|+ .|+++++..++++++. .++. -++|-| +++.+.+++.+ ++
T Consensus 11 ~s~R~~---~K~l~~i---~gkpll~~~l~~l~~~--------------~~i~-~ivvv~---~~~~i~~~~~~---~~- 62 (239)
T cd02517 11 ASSRLP---GKPLADI---AGKPMIQHVYERAKKA--------------KGLD-EVVVAT---DDERIADAVES---FG- 62 (239)
T ss_pred CCCCCC---CCCCccc---CCcCHHHHHHHHHHhC--------------CCCC-EEEEEC---CcHHHHHHHHH---cC-
Confidence 688996 7999987 6899999999988532 0122 133433 24778888864 22
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh-
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL- 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l- 168 (378)
+.+..+. + ..+.|.|++..++. .+ ....+++.+.+.|+++. ++..+
T Consensus 63 ----~~~~~~~---------------~----~~~~gt~~~~~~~~------~~-~~~~d~vlv~~gD~Pli---~~~~l~ 109 (239)
T cd02517 63 ----GKVVMTS---------------P----DHPSGTDRIAEVAE------KL-DADDDIVVNVQGDEPLI---PPEMID 109 (239)
T ss_pred ----CEEEEcC---------------c----ccCchhHHHHHHHH------hc-CCCCCEEEEecCCCCCC---CHHHHH
Confidence 2221111 0 11345666555542 22 11247899999999884 34433
Q ss_pred ---HHHHhc-CCcEEEEEecccCCC-----ccceeEEEecCCCCeEEEEecCCCh-hhhhhccCCCCccccccccceeee
Q 017059 169 ---GYFIDK-GVSAGAKVVRKAYPQ-----EKVGVFVRRGKGGPLTVVEYSELDP-SLASAINQETGRLRFCWSNVCLHM 238 (378)
Q Consensus 169 ---G~~~~~-~~~~~~kvv~K~~~~-----EkvGvl~~~~~~g~~~vvEYsel~~-~~~~~~~~~~g~l~f~~gNi~~~~ 238 (378)
-.+... +.++.+-+++-..+. ...||+ .. ++| .|.+..+-+. +.... ++. ... ..|+++..
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-~~~--~v~~~~~~~~~~~~~~-~~~--~~~--~~~~Giy~ 180 (239)
T cd02517 110 QVVAALKDDPGVDMATLATPISDEEELFNPNVVKVV-LD-KDG--YALYFSRSPIPYPRDS-SED--FPY--YKHIGIYA 180 (239)
T ss_pred HHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEE-EC-CCC--CEEEecCCCCCCCCCC-CCC--Cce--eEEEEEEE
Confidence 333233 455543333322211 222333 32 245 3455554221 11000 000 112 36999999
Q ss_pred EeHHHHHHHhh
Q 017059 239 FTLDFLNQVAN 249 (378)
Q Consensus 239 ~~l~fl~~~~~ 249 (378)
|+-+.++.+..
T Consensus 181 ~~~~~~~~~~~ 191 (239)
T cd02517 181 YRRDFLLRFAA 191 (239)
T ss_pred ECHHHHHHHHh
Confidence 99999887653
No 58
>PLN02917 CMP-KDO synthetase
Probab=91.79 E-value=8.2 Score=37.69 Aligned_cols=171 Identities=15% Similarity=0.201 Sum_probs=89.4
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+++||| +|-++++ .|+++++..+++++.. .... .++.. ..++++.+++.++ |
T Consensus 57 ~SsR~~---~K~L~~i---~GkPLL~~vi~~a~~~--------------~~~~--~VVV~--~~~e~I~~~~~~~---~- 108 (293)
T PLN02917 57 ASSRFE---GKPLVHI---LGKPMIQRTWERAKLA--------------TTLD--HIVVA--TDDERIAECCRGF---G- 108 (293)
T ss_pred CCCCCC---CCCeeeE---CCEEHHHHHHHHHHcC--------------CCCC--EEEEE--CChHHHHHHHHHc---C-
Confidence 899996 6999887 5999999999987531 1122 23333 2356777777642 2
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHhH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLG 169 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~lG 169 (378)
+.+..|. + ..+.|-|.+..++ +.+ ....+++.+.+.|.++. +|..|-
T Consensus 109 ----v~vi~~~---------------~----~~~~GT~~~~~a~------~~l-~~~~d~Vlil~gD~PlI---~~~tI~ 155 (293)
T PLN02917 109 ----ADVIMTS---------------E----SCRNGTERCNEAL------KKL-EKKYDIVVNIQGDEPLI---EPEIID 155 (293)
T ss_pred ----CEEEeCC---------------c----ccCCchHHHHHHH------Hhc-cCCCCEEEEecCCcCCC---CHHHHH
Confidence 1122211 0 1244656665443 233 23467999999999995 565554
Q ss_pred HHHh---cCCcEE--EEEe--cccCCCccceeEEEecCCCCeEEEEec-C-CChhhhhhccCCCCccccccccceeeeEe
Q 017059 170 YFID---KGVSAG--AKVV--RKAYPQEKVGVFVRRGKGGPLTVVEYS-E-LDPSLASAINQETGRLRFCWSNVCLHMFT 240 (378)
Q Consensus 170 ~~~~---~~~~~~--~kvv--~K~~~~EkvGvl~~~~~~g~~~vvEYs-e-l~~~~~~~~~~~~g~l~f~~gNi~~~~~~ 240 (378)
-+.+ .+.++. .-+. .-.+|..-+-+.|..+++|+ ++..+ . +|.+ .+. +++.....+ -|+++..|+
T Consensus 156 ~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~--alyfsr~~Ipe~-kd~-~~~~~~i~~--~n~Giy~f~ 229 (293)
T PLN02917 156 GVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGY--AIYFSRGLIPYN-KSG-KVNPQFPYL--LHLGIQSYD 229 (293)
T ss_pred HHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCe--EEEeecCcCCcC-CCc-ccccccceE--EEEEEEEeC
Confidence 3332 333332 2212 11222222233333433564 22333 2 2221 110 111112223 599999999
Q ss_pred HHHHHHH
Q 017059 241 LDFLNQV 247 (378)
Q Consensus 241 l~fl~~~ 247 (378)
.++|..+
T Consensus 230 ~~~L~~l 236 (293)
T PLN02917 230 AKFLKIY 236 (293)
T ss_pred HHHHHHH
Confidence 9999843
No 59
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=91.66 E-value=4.6 Score=41.56 Aligned_cols=168 Identities=19% Similarity=0.166 Sum_probs=88.9
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||+...||.++|+ .|+++++..++++.+. +.. .+++.++. ..+.+++++..
T Consensus 15 ~gtRl~~~~pK~l~~i---~gkpli~~~i~~l~~~---------------gi~-~i~vv~~~-~~~~i~~~~~~------ 68 (456)
T PRK09451 15 KGTRMYSDLPKVLHTL---AGKPMVQHVIDAANEL---------------GAQ-HVHLVYGH-GGDLLKQTLAD------ 68 (456)
T ss_pred CCCcCCCCCChhccee---CChhHHHHHHHHHHhc---------------CCC-cEEEEECC-CHHHHHHhhcc------
Confidence 7999998889999987 6899999988877321 121 36666664 34556666642
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH-H
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT-F 167 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~-~ 167 (378)
.++.+..|+ .|.|.++ ++.++ +.+. .-+++.+.+.|.++....|-. +
T Consensus 69 --~~~~~i~~~---------------------~~~Gt~~al~~a~------~~l~--~~~~vlV~~gD~P~i~~~~i~~l 117 (456)
T PRK09451 69 --EPLNWVLQA---------------------EQLGTGHAMQQAA------PFFA--DDEDILMLYGDVPLISVETLQRL 117 (456)
T ss_pred --CCcEEEECC---------------------CCCCcHHHHHHHH------Hhhc--cCCcEEEEeCCcccCCHHHHHHH
Confidence 123322121 2445554 33333 1221 246889999999874222211 2
Q ss_pred hHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCe-EEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 168 LGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 168 lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~-~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
+-.+...+ ..+-+++-..| ..-|++. . ++|+. .++|....++.. . .+ ...|+..++|+-+.|.+
T Consensus 118 ~~~~~~~~--~~i~~~~~~~~-~~yG~v~-~-~~g~V~~~~EKp~~~~~~--~------~~--~~~~~GiYi~~~~~l~~ 182 (456)
T PRK09451 118 RDAKPQGG--IGLLTVKLDNP-TGYGRIT-R-ENGKVVGIVEQKDATDEQ--R------QI--QEINTGILVANGADLKR 182 (456)
T ss_pred HHHhhcCC--EEEEEEEcCCC-CCceEEE-e-cCCeEEEEEECCCCChHH--h------hc--cEEEEEEEEEEHHHHHH
Confidence 22222223 22223322233 3467753 3 24532 334443322210 0 01 13578889999887776
Q ss_pred Hhh
Q 017059 247 VAN 249 (378)
Q Consensus 247 ~~~ 249 (378)
.++
T Consensus 183 ~l~ 185 (456)
T PRK09451 183 WLA 185 (456)
T ss_pred HHH
Confidence 654
No 60
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=91.36 E-value=1.9 Score=44.88 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=77.2
Q ss_pred ccCCC-CCCCcceeccC--CCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhc----
Q 017059 12 TRLGS-SDPKGCVNIGL--PSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGH---- 84 (378)
Q Consensus 12 tRLG~-~~pKg~~~i~l--~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~---- 84 (378)
..|+| ..|||++|.-- ..-+|-|+ |++..-...|.. +-.+-+=+-.|+...+.-.+.+++-
T Consensus 159 ~GLnYg~lPKGLl~FH~Y~~~~rTp~E---EHL~Eaa~Ya~~---------~g~~~lHFTVS~eH~~~F~~~~~~~~~~~ 226 (513)
T PF14134_consen 159 EGLNYGNLPKGLLPFHKYPDGIRTPFE---EHLVEAALYAKS---------NGKANLHFTVSPEHLDLFKKEVEEVKPKY 226 (513)
T ss_pred cCCCCCCCCceeeecccCCCCCcCcHH---HHHHHHHHHHhc---------CCeEEEEEeeCHHHHHHHHHHHHHHHHHH
Confidence 34554 47999998742 12355554 444322222221 1234455566766443333333221
Q ss_pred -CCCCCCCCcEEEEEcCce---eEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcc
Q 017059 85 -KYFGLESDQVTFFQQGTI---PCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 160 (378)
Q Consensus 85 -~~Fgl~~~~v~~f~Q~~~---P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~ 160 (378)
..||.. =+|.|=.|..- .++|.|+.++-.+.+++..-|.|||.+..-| .+..-..|||=||||+..
T Consensus 227 e~~~~v~-f~IsfS~Qk~sTDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNL---------N~ldaDiIFIKNIDNVvp 296 (513)
T PF14134_consen 227 EKKYGVK-FEISFSEQKPSTDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENL---------NDLDADIIFIKNIDNVVP 296 (513)
T ss_pred HHhhCce-EEEEecccCCCCCeeEECCCCCccCCCCCCEEeCCCcchHHHhhh---------ccccCCEEEEeCccccCC
Confidence 124432 25666666533 6778899998888999999999999865544 445678999999999985
No 61
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=91.35 E-value=2.1 Score=36.90 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=37.2
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHH
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 82 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~ 82 (378)
++|+||| +||.++++ .|+++++..++++.... + =+++|.+.. +++.+++.
T Consensus 7 G~s~Rmg--~~K~l~~i---~g~~li~~~l~~l~~~~---------------~-~~Ivvv~~~---~~~~~~~~ 56 (160)
T PF12804_consen 7 GKSSRMG--GPKALLPI---GGKPLIERVLEALREAG---------------V-DDIVVVTGE---EEIYEYLE 56 (160)
T ss_dssp SSCGGGT--SCGGGSEE---TTEEHHHHHHHHHHHHT---------------E-SEEEEEEST---HHHHHHHT
T ss_pred cCcccCC--CCccceeE---CCccHHHHHHHHhhccC---------------C-ceEEEecCh---HHHHHHHh
Confidence 3899998 49999988 89999999999885431 1 257888877 34555554
No 62
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=91.06 E-value=4.5 Score=39.64 Aligned_cols=192 Identities=16% Similarity=0.123 Sum_probs=95.5
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||+- ..||.++|+ .|+++++..++.+... ++. .++|.+.. ..+.+.++|.....
T Consensus 18 ~g~Rl~~~t~~~pK~l~pv---~g~pii~~~l~~l~~~---------------gi~-~i~vv~~~-~~~~i~~~~~~~~~ 77 (302)
T PRK13389 18 LGTRMLPATKAIPKEMLPL---VDKPLIQYVVNECIAA---------------GIT-EIVLVTHS-SKNSIENHFDTSFE 77 (302)
T ss_pred CCccCCCccCCCCceeeEE---CCEEHHHHHHHHHHHC---------------CCC-EEEEEeCC-CHHHHHHHHccchh
Confidence 8999974 799999988 6789999998887532 111 25565554 46778999964221
Q ss_pred CC--CCCC-cEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcc---
Q 017059 87 FG--LESD-QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV--- 160 (378)
Q Consensus 87 Fg--l~~~-~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~--- 160 (378)
++ +++. +..+ .+..-... ..+..+ .......|-|.|+-...... +. +-+-+.|.+-||++-
T Consensus 78 ~~~~l~~~~~~~~-~~e~~~i~-~~~~~i---~~~~q~~~~Gtg~Av~~a~~------~~--~~~~~lVl~gD~~~~~~~ 144 (302)
T PRK13389 78 LEAMLEKRVKRQL-LDEVQSIC-PPHVTI---MQVRQGLAKGLGHAVLCAHP------VV--GDEPVAVILPDVILDEYE 144 (302)
T ss_pred hhhhhhhhhhhHH-HHhhhhcc-ccCceE---EEeecCCCCChHHHHHHHHH------Hc--CCCCEEEEeCcceecccc
Confidence 21 1100 0000 00000000 000000 00011346677665443221 11 224567778999862
Q ss_pred ---cccCH-HHhHHHHhcCCcEEEEEecccCCCccceeEEEec---CCC-CeEEEEecCCChhhhhhccCCCCccccccc
Q 017059 161 ---RVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG---KGG-PLTVVEYSELDPSLASAINQETGRLRFCWS 232 (378)
Q Consensus 161 ---~~~DP-~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~---~~g-~~~vvEYsel~~~~~~~~~~~~g~l~f~~g 232 (378)
...|- .++-++.+.+++. +-+. +......-|++...+ .+| .-.|+++-|=|..... .. ...
T Consensus 145 ~~~~~~dl~~l~~~h~~~~~~t-l~~~-~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------~s--~~~ 213 (302)
T PRK13389 145 SDLSQDNLAEMIRRFDETGHSQ-IMVE-PVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------PS--NLA 213 (302)
T ss_pred cccccccHHHHHHHHHhcCCCE-EEEE-EcccCCcceEEEecCcccccCCcceEEEEEECCCCCCC-------Cc--cEE
Confidence 11232 3667776677663 2222 222334568886531 011 1234454443331100 01 125
Q ss_pred cceeeeEeHHHHH
Q 017059 233 NVCLHMFTLDFLN 245 (378)
Q Consensus 233 Ni~~~~~~l~fl~ 245 (378)
|+..++|+-+.++
T Consensus 214 ~~GiYi~~~~il~ 226 (302)
T PRK13389 214 IVGRYVLSADIWP 226 (302)
T ss_pred EEEEEEECHHHHH
Confidence 8888999977663
No 63
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=90.42 E-value=6.3 Score=37.21 Aligned_cols=54 Identities=24% Similarity=0.291 Sum_probs=39.5
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHh
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEG 83 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~ 83 (378)
.||||+- ..||.++|+ .|+++++..++.+.+. ++. .++|.|.. ..+.+.++|..
T Consensus 10 ~gtRl~plt~~~pK~llpv---~gkpli~~~l~~l~~~---------------gi~-~i~iv~~~-~~~~i~~~~~~ 66 (267)
T cd02541 10 LGTRFLPATKAIPKEMLPI---VDKPVIQYIVEEAVAA---------------GIE-DIIIVTGR-GKRAIEDHFDR 66 (267)
T ss_pred CCccCCCcccCCCceeeEE---CCEEHHHHHHHHHHHC---------------CCC-EEEEEeCC-chHHHHHHhCC
Confidence 7999973 789999998 4789999999887531 222 36677765 45668888854
No 64
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=90.07 E-value=5.4 Score=40.09 Aligned_cols=170 Identities=22% Similarity=0.327 Sum_probs=104.0
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||- .+.||-|+|| -||.+++..++.+.+ .++. =++++-....+.++++|.+...
T Consensus 11 ~GtRLrPlT~~~PKPllpI---~gkPii~~~l~~L~~---------------~Gv~--eivi~~~y~~~~i~~~~~d~~~ 70 (358)
T COG1208 11 YGTRLRPLTDDRPKPLLPI---AGKPLIEYVLEALAA---------------AGVE--EIVLVVGYLGEQIEEYFGDGEG 70 (358)
T ss_pred ccccccccccCCCccccee---CCccHHHHHHHHHHH---------------CCCc--EEEEEeccchHHHHHHHhcccc
Confidence 799997 4789999998 499999999998843 1222 3344455666779999998655
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP- 165 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP- 165 (378)
+|. +|.+..|.. |-|.|+-.... .+.+ +.+-+.+.+-|++-- .|.
T Consensus 71 ~~~---~I~y~~e~~---------------------~lGTag~l~~a-----~~~l---~~~~f~v~~GDv~~~--~dl~ 116 (358)
T COG1208 71 LGV---RITYVVEKE---------------------PLGTAGALKNA-----LDLL---GGDDFLVLNGDVLTD--LDLS 116 (358)
T ss_pred cCC---ceEEEecCC---------------------cCccHHHHHHH-----HHhc---CCCcEEEEECCeeec--cCHH
Confidence 553 455554442 55555544433 2222 227889999999884 442
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
.++.++..++....+-.++...+ ..-|++.... ++ -.|+++.|=|.. ... .+ ...|....+|+-+.++
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~~~~-~~-~~v~~f~ekp~~-~~~----~~----~~in~Giyi~~~~v~~ 184 (358)
T COG1208 117 ELLEFHKKKGALATIALTRVLDP-SEFGVVETDD-GD-GRVVEFREKPGP-EEP----PS----NLINAGIYIFDPEVFD 184 (358)
T ss_pred HHHHHHHhccCccEEEEEecCCC-CcCceEEecC-CC-ceEEEEEecCCC-CCC----CC----ceEEeEEEEECHHHhh
Confidence 37777777755554444444334 4567666541 22 456677666532 110 00 1247777888877775
No 65
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=89.97 E-value=13 Score=33.70 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=85.7
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.|+||+ .|-+.++ .|+++++..++++++.. ... .+++-| +++.+.++++++ |.
T Consensus 11 ~s~R~~---~K~l~~l---~Gkpll~~~l~~l~~~~--------------~~~-~IvV~~---~~~~i~~~~~~~---~~ 63 (223)
T cd02513 11 GSKGIP---GKNIRPL---GGKPLIAWTIEAALESK--------------LFD-RVVVST---DDEEIAEVARKY---GA 63 (223)
T ss_pred CCCCCC---Ccccchh---CCccHHHHHHHHHHhCC--------------CCC-EEEEEC---CcHHHHHHHHHh---CC
Confidence 789996 5888876 69999999999886421 111 234433 346677776642 21
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHHC--CceEEEEEecCCCcccccCHH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMATR--GIKYIDCYGVDNALVRVADPT 166 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~~--Gi~yi~v~~vDN~l~~~~DP~ 166 (378)
.+ .+.. +........|-++ +..+ ++.+... +.+++.+.+.|.++. +|.
T Consensus 64 ---~~-~~~~----------------~~~~~~~~~~~~~~i~~~------l~~l~~~~~~~d~vlv~~~D~P~i---~~~ 114 (223)
T cd02513 64 ---EV-PFLR----------------PAELATDTASSIDVILHA------LDQLEELGRDFDIVVLLQPTSPLR---SAE 114 (223)
T ss_pred ---Cc-eeeC----------------ChHHCCCCCCcHHHHHHH------HHHHHHhCCCCCEEEEeCCCCCcC---CHH
Confidence 01 1111 1111111112222 2222 3344332 368999999999995 454
Q ss_pred Hh----HHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHH
Q 017059 167 FL----GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLD 242 (378)
Q Consensus 167 ~l----G~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~ 242 (378)
.+ -.+...+.+..+.+.+-... -..+. ... ++| ..++-|.+-.... .++.... | .-|.+..+++.+
T Consensus 115 ~i~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~-~~~~~~~~~~~~~----~q~~~~~-~-~~n~~~y~~~~~ 184 (223)
T cd02513 115 DIDEAIELLLSEGADSVFSVTEFHRF-PWRAL-GLD-DNG-LEPVNYPEDKRTR----RQDLPPA-Y-HENGAIYIAKRE 184 (223)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCcC-cHHhe-eec-cCC-ceeccCcccccCC----cCCChhH-e-eECCEEEEEEHH
Confidence 44 44444567776666553321 12222 221 133 3333332211111 1112112 2 346677999999
Q ss_pred HHHHH
Q 017059 243 FLNQV 247 (378)
Q Consensus 243 fl~~~ 247 (378)
++.+.
T Consensus 185 ~~~~~ 189 (223)
T cd02513 185 ALLES 189 (223)
T ss_pred HHHhc
Confidence 88553
No 66
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=89.02 E-value=0.74 Score=42.83 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=41.6
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHh
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEG 83 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~ 83 (378)
++|+|||.+.||-++++ .|+++++..+++++.. ...-.++|.|++.......+++++
T Consensus 11 G~g~R~g~~~~K~l~~l---~gkpll~~~i~~~~~~---------------~~~~~ivVv~~~~~~~~~~~~~~~ 67 (230)
T PRK13385 11 GQGKRMNAPLNKMWLDL---VGEPIFIHALRPFLAD---------------NRCSKIIIVTQAQERKHVQDLMKQ 67 (230)
T ss_pred eeccccCCCCCcceeEE---CCeEHHHHHHHHHHcC---------------CCCCEEEEEeChhhHHHHHHHHHh
Confidence 38999998889999988 6999999998876431 111247777777665666666665
No 67
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=88.43 E-value=0.66 Score=42.06 Aligned_cols=54 Identities=28% Similarity=0.391 Sum_probs=40.2
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHh
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEG 83 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~ 83 (378)
++|||||. .||.++++ .|+++++..++.+... ++ =.+++.||+ +++.++.++++
T Consensus 9 G~gsRmg~-~~K~Ll~i---~GkplI~~vi~~l~~~---------------~i-~~I~Vv~~~-~~~~~~~~l~~ 62 (183)
T TIGR00454 9 GKGTRLGG-VEKPLIEV---CGRCLIDHVLSPLLKS---------------KV-NNIIIATSP-HTPKTEEYINS 62 (183)
T ss_pred ccCccCCC-CCceEeEE---CCEEHHHHHHHHHHhC---------------CC-CEEEEEeCC-CHHHHHHHHhh
Confidence 38999985 79999988 5899999999888532 11 146777776 45668888874
No 68
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=87.39 E-value=6 Score=36.39 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=81.1
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.|+||+- ..||.++|+ .|+++++..++.+... +.. -++|++...- +.+.+++.+..+
T Consensus 10 ~g~rl~plt~~~pK~llpv---~g~pli~~~l~~l~~~---------------gi~-~i~vv~~~~~-~~~~~~~~~~~~ 69 (216)
T cd02507 10 FGSRFLPLTSDIPKALLPV---ANVPLIDYTLEWLEKA---------------GVE-EVFVVCCEHS-QAIIEHLLKSKW 69 (216)
T ss_pred CccccCccccCCCcccceE---CCEEHHHHHHHHHHHC---------------CCC-eEEEEeCCcH-HHHHHHHHhccc
Confidence 5999973 789999998 5889999888876421 222 3677777654 446666665432
Q ss_pred CCCCC-CcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 87 FGLES-DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 87 Fgl~~-~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
..... ..+.+ .+. . ...+-|.++..... ...+ .+.+.+.+.|.+. ..|.
T Consensus 70 ~~~~~~~~v~~-------~~~--------~----~~~~~Gta~~l~~~--~~~i-------~~dflv~~gD~i~--~~~l 119 (216)
T cd02507 70 SSLSSKMIVDV-------ITS--------D----LCESAGDALRLRDI--RGLI-------RSDFLLLSCDLVS--NIPL 119 (216)
T ss_pred ccccCCceEEE-------EEc--------c----CCCCCccHHHHHHH--hhcC-------CCCEEEEeCCEee--cCCH
Confidence 10000 00100 000 0 11244555433322 2222 3457788888765 2343
Q ss_pred H-HhHH--HHhcCCcEEEEEecccCC--------CccceeEEEecCCCCeEEEEecCCChh
Q 017059 166 T-FLGY--FIDKGVSAGAKVVRKAYP--------QEKVGVFVRRGKGGPLTVVEYSELDPS 215 (378)
Q Consensus 166 ~-~lG~--~~~~~~~~~~kvv~K~~~--------~EkvGvl~~~~~~g~~~vvEYsel~~~ 215 (378)
. ++-. ....+.++.+.+.....+ .+.-++++...++++..+++|.+-+++
T Consensus 120 ~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~ 180 (216)
T cd02507 120 SELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDE 180 (216)
T ss_pred HHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCc
Confidence 3 3322 233444444333322111 223466666544456788888776554
No 69
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=86.74 E-value=15 Score=36.23 Aligned_cols=238 Identities=19% Similarity=0.251 Sum_probs=135.8
Q ss_pred cccccccc---CCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHH
Q 017059 6 GTLIQGTR---LGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 82 (378)
Q Consensus 6 ~~~~qGtR---LG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~ 82 (378)
|+--.||| |-++-||-+||| .|.-..+.+++...++..++ =+++.-+...+.-..|+.
T Consensus 10 GGP~kGTRFRPLSf~vPKPLfpi---aG~pmI~Hhi~ac~qi~~l~----------------eI~LvGFy~e~~f~~fis 70 (407)
T KOG1460|consen 10 GGPQKGTRFRPLSFNVPKPLFPI---AGVPMIHHHISACKQISGLA----------------EILLVGFYEERVFTDFIS 70 (407)
T ss_pred cCCCCCccccccccCCCCCcccc---CCcchhhhhHHHHhcccchh----------------heeEEecccchHHHHHHH
Confidence 44458999 568999999988 56667777776665554442 123334444555566665
Q ss_pred hc-CCCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCccc
Q 017059 83 GH-KYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 161 (378)
Q Consensus 83 ~~-~~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~ 161 (378)
+- +.|. +|. +.--+-+|.|.||-.-.. -|+.++---..+|+.|-|=...
T Consensus 71 ~~~~e~~-------------~pv-----------rYL~E~~plGtaGgLyhF-----rdqIl~g~ps~vFvlnaDVCcs- 120 (407)
T KOG1460|consen 71 AIQQEFK-------------VPV-----------RYLREDNPLGTAGGLYHF-----RDQILAGSPSAVFVLNADVCCS- 120 (407)
T ss_pred HHHhhcc-------------cch-----------hhhccCCCCCcccceeeh-----hhHHhcCCCceEEEEecceecC-
Confidence 52 1222 111 122234788887654433 3455566778899999997774
Q ss_pred ccCHHHhHHHHhcCCcEEE---EEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeee
Q 017059 162 VADPTFLGYFIDKGVSAGA---KVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 238 (378)
Q Consensus 162 ~~DP~~lG~~~~~~~~~~~---kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~ 238 (378)
..-+.++..+...+..+.+ |+.+- ....-|.++... ..-.|+-|.|=|.....+ .-|.....
T Consensus 121 fPl~~ml~ahr~~g~~~tll~tkvs~e--~asnfG~lV~dP--~t~evlHYveKPsTfvSd-----------~InCGvYl 185 (407)
T KOG1460|consen 121 FPLQDMLEAHRRYGGIGTLLVTKVSRE--QASNFGCLVEDP--STGEVLHYVEKPSTFVSD-----------IINCGVYL 185 (407)
T ss_pred CcHHHHHHHHhhcCCceEEEEEEecHh--HhhccCeeeecC--CcCceEEeecCcchhhhc-----------ccceeEEE
Confidence 3446788888888877753 33332 233457777642 223578898877765432 24777788
Q ss_pred EeHHHHHHHhhccccCccceeeecccCCCC-CCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCC
Q 017059 239 FTLDFLNQVANGLEKDSVYHLAEKKIPSIH-GQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANG 309 (378)
Q Consensus 239 ~~l~fl~~~~~~~~~~lp~h~a~Kkip~~~-~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g 309 (378)
|+-+.++.+.+..+..-...-..|..|..+ +-.--++||+=++-- ++.+-.++...-.+=++-+|.+--
T Consensus 186 F~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlsp--Lag~k~lY~y~t~~fW~QiKtags 255 (407)
T KOG1460|consen 186 FTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSP--LAGSKQLYAYETTDFWSQIKTAGS 255 (407)
T ss_pred ecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEeechhhhh--hcCCCceEEEecccHHHHhccccc
Confidence 888776655432211000111223334333 223458999755433 344444444444445688887743
No 70
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=86.68 E-value=13 Score=36.10 Aligned_cols=150 Identities=21% Similarity=0.254 Sum_probs=98.7
Q ss_pred cccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 9 IQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 9 ~qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
++||||- +..||-++|| -+|...++-++++... +.. -++|.+++.+-...++++..=.
T Consensus 9 G~GTRL~PlT~~~~KqLlpV---~~KPmi~y~l~~L~~a---------------GI~-dI~II~~~~~~~~~~~llGdgs 69 (286)
T COG1209 9 GSGTRLRPLTRVVPKQLLPV---YDKPMIYYPLETLMLA---------------GIR-DILIVVGPEDKPTFKELLGDGS 69 (286)
T ss_pred cCccccccccccCCccccee---cCcchhHhHHHHHHHc---------------CCc-eEEEEecCCchhhhhhhhcCcc
Confidence 3899986 6789999988 5688888888888532 222 3788888888888888888878
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
.||+ ++++-.|+ .|.|=++-+. +-+++. |-+-..++--||++-. -=.
T Consensus 70 ~~gv---~itY~~Q~---------------------~p~GlA~Av~------~a~~fv--~~~~f~l~LGDNi~~~-~l~ 116 (286)
T COG1209 70 DFGV---DITYAVQP---------------------EPDGLAHAVL------IAEDFV--GDDDFVLYLGDNIFQD-GLS 116 (286)
T ss_pred ccCc---ceEEEecC---------------------CCCcHHHHHH------HHHhhc--CCCceEEEecCceecc-ChH
Confidence 8986 68888887 4555555544 233333 5566788899999965 223
Q ss_pred HHhHHHHh--cCCcEEEEEecccCCCccceeEEEecCCCC-eEEEEecCCCh
Q 017059 166 TFLGYFID--KGVSAGAKVVRKAYPQEKVGVFVRRGKGGP-LTVVEYSELDP 214 (378)
Q Consensus 166 ~~lG~~~~--~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~-~~vvEYsel~~ 214 (378)
.++-.+.+ .++.+.+.-|. .-++-||+... .+|+ ..++|=.+.|+
T Consensus 117 ~~~~~~~~~~~ga~i~~~~V~---dP~rfGV~e~d-~~~~v~~l~EKP~~P~ 164 (286)
T COG1209 117 ELLEHFAEEGSGATILLYEVD---DPSRYGVVEFD-EDGKVIGLEEKPKEPK 164 (286)
T ss_pred HHHHHHhccCCCcEEEEEEcC---CcccceEEEEc-CCCcEEEeEECCCCCC
Confidence 35555554 45555444333 34577887664 2453 23455555544
No 71
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=86.46 E-value=1.2 Score=42.60 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=38.6
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 82 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~ 82 (378)
+|||||.+.||-++++ .|+++++..++.+.... .+. .++|.++....+...+.++
T Consensus 34 ~gsRmg~~~pKqll~l---~Gkpll~~tl~~~~~~~--------------~i~-~IvVV~~~~~~~~~~~~~~ 88 (252)
T PLN02728 34 VGKRMGANMPKQYLPL---LGQPIALYSLYTFARMP--------------EVK-EIVVVCDPSYRDVFEEAVE 88 (252)
T ss_pred ccccCCCCCCcceeEE---CCeEHHHHHHHHHHhCC--------------CCC-eEEEEeCHHHHHHHHHHHH
Confidence 9999998899999987 68999999888775321 122 3566666555555555554
No 72
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=85.28 E-value=5.5 Score=36.55 Aligned_cols=99 Identities=19% Similarity=0.347 Sum_probs=61.2
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+|+|| .+|+++++ .|++++|+.++++.. ... .++| ++..+.+. |. .||
T Consensus 14 ~srRm---~dK~l~~~---~g~~lie~v~~~L~~----------------~~~-~vvi-~~~~~~~~---~~----~~g- 61 (192)
T COG0746 14 KSRRM---RDKALLPL---NGRPLIEHVIDRLRP----------------QVD-VVVI-SANRNQGR---YA----EFG- 61 (192)
T ss_pred ccccc---ccccccee---CCeEHHHHHHHHhcc----------------cCC-EEEE-eCCCchhh---hh----ccC-
Confidence 89999 89999987 789999999998842 334 3444 44444432 22 243
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHhH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLG 169 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~lG 169 (378)
+|.+-.+- ++. .| =.||+.+| ..-+-+++++..+|.+.. .|.++-
T Consensus 62 ------------~~vv~D~~------~~~---GP--L~Gi~~al---------~~~~~~~~~v~~~D~P~i---~~~lv~ 106 (192)
T COG0746 62 ------------LPVVPDEL------PGF---GP--LAGILAAL---------RHFGTEWVLVLPCDMPFI---PPELVE 106 (192)
T ss_pred ------------CceeecCC------CCC---CC--HHHHHHHH---------HhCCCCeEEEEecCCCCC---CHHHHH
Confidence 33432111 000 01 03444444 445689999999999995 577777
Q ss_pred HHHhcC
Q 017059 170 YFIDKG 175 (378)
Q Consensus 170 ~~~~~~ 175 (378)
+....-
T Consensus 107 ~l~~~~ 112 (192)
T COG0746 107 RLLSAF 112 (192)
T ss_pred HHHHhh
Confidence 776543
No 73
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=84.79 E-value=26 Score=32.31 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=34.2
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHh
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEG 83 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~ 83 (378)
.++||+ +|-++|+ .|+++++..++++.+.. ++. .++|-|. ++.+.+++++
T Consensus 12 ~s~R~~---~K~l~~i---~GkPli~~~i~~l~~~~--------------~~~-~ivv~t~---~~~i~~~~~~ 61 (238)
T PRK13368 12 GSSRLP---GKPLLDI---LGKPMIQHVYERAAQAA--------------GVE-EVYVATD---DQRIEDAVEA 61 (238)
T ss_pred CCCCCC---CCccCcc---CCcCHHHHHHHHHHhcC--------------CCC-eEEEECC---hHHHHHHHHH
Confidence 567885 5999887 69999999998875320 111 3455453 4778888875
No 74
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=84.57 E-value=1.7 Score=40.89 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=42.4
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHh
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEG 83 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~ 83 (378)
+.|+|||.+.||=.+++ .|+++++..++.+.+. ..+. -+++..++...+.+++++.+
T Consensus 9 G~G~R~g~~~pKQf~~l---~Gkpvl~~tl~~f~~~--------------~~i~-~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 9 GSGSRMGSGIPKQFLEL---GGKPVLEYTLEAFLAS--------------PEID-EIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp S-STCCTSSS-GGGSEE---TTEEHHHHHHHHHHTT--------------TTES-EEEEEESGGGHHHHHHHHHH
T ss_pred ccchhcCcCCCCeeeEE---CCeEeHHHHHHHHhcC--------------CCCC-eEEEEecchhHHHHHHhhcC
Confidence 48999999999999987 6999999998887432 1122 36777777777888888886
No 75
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=84.56 E-value=25 Score=32.21 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=25.5
Q ss_pred cccccCC---CCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 9 IQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 9 ~qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+.||||+ .+.||.++|+ .|+++++..++.+.
T Consensus 7 G~g~Rl~plt~~~pK~ll~i---~g~pli~~~l~~l~ 40 (231)
T cd04183 7 GLGSRFKKAGYTYPKPLIEV---DGKPMIEWVIESLA 40 (231)
T ss_pred cCCccccccCCCCCceeeEE---CCEEHHHHHHHhhh
Confidence 4799995 3789999988 57899999888774
No 76
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=83.36 E-value=1.7 Score=38.53 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=24.5
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+|+||| .||.++++ .|+++++..+++++
T Consensus 9 ~s~R~g--~~K~ll~~---~g~pll~~~i~~l~ 36 (188)
T TIGR03310 9 LSSRMG--QNKLLLPY---KGKTILEHVVDNAL 36 (188)
T ss_pred CcccCC--CCceeccc---CCeeHHHHHHHHHH
Confidence 799998 69999987 68999999888875
No 77
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=81.91 E-value=60 Score=32.58 Aligned_cols=176 Identities=18% Similarity=0.206 Sum_probs=111.8
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC-
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK- 85 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~- 85 (378)
-||||- .+.||.+.|++ ++-+...+++.+.. .++ --+++.|+..-..-.+.+.+.+.
T Consensus 19 ~GTRLrPLT~t~pKPlVpfg---n~pmI~hqieal~n---------------sGi-~~I~la~~y~s~sl~~~~~k~y~~ 79 (371)
T KOG1322|consen 19 YGTRLRPLTLTRPKPLVPFG---NKPMILHQIEALIN---------------SGI-TKIVLATQYNSESLNRHLSKAYGK 79 (371)
T ss_pred CCceeeceeccCCCcccccC---cchhhHHHHHHHHh---------------CCC-cEEEEEEecCcHHHHHHHHHHhhh
Confidence 789975 67889888875 67777777766532 133 25888888876666666666652
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
.|| ..|.+-+|. . |-|--|-..+.++ .|.... +- -++|-|.|=+- +..=-
T Consensus 80 ~lg---Vei~~s~et-e--------------------plgtaGpl~laR~--~L~~~~--~~-~ffVLnsDvi~-~~p~~ 129 (371)
T KOG1322|consen 80 ELG---VEILASTET-E--------------------PLGTAGPLALARD--FLWVFE--DA-PFFVLNSDVIC-RMPYK 129 (371)
T ss_pred ccc---eEEEEEecc-C--------------------CCcccchHHHHHH--HhhhcC--CC-cEEEecCCeee-cCCHH
Confidence 344 234333332 1 5555555444432 121111 11 46778777554 55445
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
.|+-+|..+++|...-|++=. ...+-|++.-.. +.-+|..++|=|++.... ..|..+..|+-+.|.
T Consensus 130 ~~vqfH~~~gae~TI~~t~vd-epSkyGvv~~d~--~~grV~~F~EKPkd~vsn-----------kinaGiYi~~~~vL~ 195 (371)
T KOG1322|consen 130 EMVQFHRAHGAEITIVVTKVD-EPSKYGVVVIDE--DTGRVIRFVEKPKDLVSN-----------KINAGIYILNPEVLD 195 (371)
T ss_pred HHHHHHHhcCCceEEEEEecc-CccccceEEEec--CCCceeEehhCchhhhhc-----------cccceEEEECHHHHh
Confidence 699999999999987666543 355778887752 234678888888855431 246778999999998
Q ss_pred HHh
Q 017059 246 QVA 248 (378)
Q Consensus 246 ~~~ 248 (378)
++.
T Consensus 196 ri~ 198 (371)
T KOG1322|consen 196 RIL 198 (371)
T ss_pred Hhh
Confidence 876
No 78
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.51 E-value=1.9 Score=37.82 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=25.2
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 43 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~ 43 (378)
.|+|||. ||.++++ .|+++++..++++..
T Consensus 10 ~s~R~g~--~K~l~~~---~g~~li~~~i~~l~~ 38 (186)
T cd04182 10 RSSRMGG--NKLLLPL---DGKPLLRHALDAALA 38 (186)
T ss_pred CCCCCCC--CceeCee---CCeeHHHHHHHHHHh
Confidence 7999985 9999988 699999999998753
No 79
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=79.68 E-value=1.4 Score=40.26 Aligned_cols=31 Identities=32% Similarity=0.599 Sum_probs=27.1
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
++|||||.+.||.++++ .|+++++..++++.
T Consensus 8 G~s~R~~~~~~K~l~~l---~gkpll~~~l~~l~ 38 (217)
T TIGR00453 8 GRGTRFGSGVPKQYLEL---GGRPLLEHTLDAFL 38 (217)
T ss_pred cccccCCCCCCccEeEE---CCeEHHHHHHHHHh
Confidence 37999998789999987 68999999998874
No 80
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=76.46 E-value=2.5 Score=38.44 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=24.4
Q ss_pred ccccCCCCCCCcceeccCCCC-CChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSG-KSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~-ksllql~~e~i~ 42 (378)
+++||| .+|.++++ .| +|+++..++++.
T Consensus 18 ~s~RmG--~~K~ll~~---~g~~~ll~~~i~~l~ 46 (196)
T PRK00560 18 KSSRMG--ENKALLPF---GSYSSLLEYQYTRLL 46 (196)
T ss_pred ccccCC--CCceEEEe---CCCCcHHHHHHHHHH
Confidence 899998 58999977 57 999999999875
No 81
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=74.86 E-value=5.1 Score=37.94 Aligned_cols=56 Identities=25% Similarity=0.319 Sum_probs=42.8
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHH
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 82 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~ 82 (378)
++|||||.+.||=.+++ .|+++|+..++-++... .-=.++|.+++.-+....++.+
T Consensus 13 G~G~R~~~~~pKq~l~l---~g~pll~~tl~~f~~~~---------------~i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 13 GFGSRMGNPVPKQYLEL---GGRPLLEHTLEAFLESP---------------AIDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred ccccccCCCCCceEEEE---CCEEehHHHHHHHHhCc---------------CCCeEEEEEChhhhHHHHHhhh
Confidence 38999999999998877 79999998888775321 1124777787777777777776
No 82
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=74.23 E-value=7.5 Score=36.55 Aligned_cols=28 Identities=29% Similarity=0.209 Sum_probs=23.7
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 43 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~ 43 (378)
+||||+ +|-++++ .||++++..++++++
T Consensus 9 ~s~R~~---~K~L~~l---~GkPli~~~le~~~~ 36 (238)
T TIGR00466 9 ASSRLP---GKPLEDI---FGKPMIVHVAENANE 36 (238)
T ss_pred CCCCCC---CCeeccc---CCcCHHHHHHHHHHh
Confidence 899994 8999877 699999999998753
No 83
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=73.89 E-value=2.7 Score=37.09 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=24.9
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 43 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~ 43 (378)
+|+|||. ||.++++ .|+++++..++++.+
T Consensus 10 ~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~~ 38 (181)
T cd02503 10 KSRRMGG--DKALLEL---GGKPLLEHVLERLKP 38 (181)
T ss_pred ccccCCC--CceeeEE---CCEEHHHHHHHHHHh
Confidence 7999995 9999988 589999999988753
No 84
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=72.77 E-value=2.7 Score=38.24 Aligned_cols=30 Identities=30% Similarity=0.619 Sum_probs=26.6
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+|+|||...||-++|+ .|+++++..++++.
T Consensus 10 ~s~R~~~~~~K~l~~i---~Gkpll~~~i~~l~ 39 (218)
T cd02516 10 SGSRMGADIPKQFLEL---GGKPVLEHTLEAFL 39 (218)
T ss_pred ccccCCCCCCcceeEE---CCeEHHHHHHHHHh
Confidence 7999997789999988 69999999999875
No 85
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=71.86 E-value=2.9 Score=38.55 Aligned_cols=30 Identities=30% Similarity=0.667 Sum_probs=26.8
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
.|+|||...||-++++ .|+++++..+++++
T Consensus 13 ~s~R~g~~~~K~l~~~---~g~pli~~~l~~l~ 42 (227)
T PRK00155 13 KGSRMGADRPKQYLPL---GGKPILEHTLEAFL 42 (227)
T ss_pred cccccCCCCCceeeEE---CCEEHHHHHHHHHH
Confidence 7999998899999988 58999999998875
No 86
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=71.02 E-value=3.6 Score=36.80 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=24.1
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
++|+|||. +|.++++ .|+++++..++.++
T Consensus 9 G~s~Rmg~--~K~ll~~---~g~~ll~~~i~~~~ 37 (190)
T TIGR03202 9 GQSRRMGE--NKLALPL---GETTLGSASLKTAL 37 (190)
T ss_pred CccccCCC--Cceecee---CCccHHHHHHHHHH
Confidence 38999995 7999977 68999999887764
No 87
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=70.12 E-value=3.8 Score=36.29 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=24.7
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+|||||- .||.++++ .|+++++..++++.
T Consensus 10 ~s~Rmg~-~~K~l~~i---~g~pll~~~l~~l~ 38 (186)
T TIGR02665 10 RARRMGG-RDKGLVEL---GGKPLIEHVLARLR 38 (186)
T ss_pred ccccCCC-CCCceeEE---CCEEHHHHHHHHHH
Confidence 7999983 39999988 68999999998874
No 88
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=69.08 E-value=4 Score=40.92 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=24.3
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+|+||| .+|.++++ .|+++++..++++.
T Consensus 170 kSsRMG--~dKaLL~~---~GkpLl~~~ie~l~ 197 (346)
T PRK14500 170 KSRRMG--KDKALLNY---QGQPHAQYLYDLLA 197 (346)
T ss_pred ccccCC--CCccccee---CCccHHHHHHHHHH
Confidence 899998 69999987 58999999887764
No 89
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=68.54 E-value=8 Score=35.07 Aligned_cols=53 Identities=28% Similarity=0.444 Sum_probs=38.2
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHh
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEG 83 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~ 83 (378)
++|||||. .=|-++++ .||.+...-++.+.. .+ . -+++-||+.|- .|++|+++
T Consensus 9 GrGtRmg~-~EKPlleV---~GkpLI~~v~~al~~---~~-------------d-~i~v~isp~tp-~t~~~~~~ 61 (177)
T COG2266 9 GRGTRMGR-PEKPLLEV---CGKPLIDRVLEALRK---IV-------------D-EIIVAISPHTP-KTKEYLES 61 (177)
T ss_pred CcccccCC-CcCcchhh---CCccHHHHHHHHHHh---hc-------------C-cEEEEeCCCCH-hHHHHHHh
Confidence 38999996 45666654 799998877776643 11 1 27888998775 48999986
No 90
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=68.52 E-value=4.3 Score=37.03 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.5
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+|+|||. +|.++++ .|+|+++..++.+.
T Consensus 17 ~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~ 44 (200)
T PRK02726 17 KSSRMGQ--DKALLPW---QGVPLLQRVARIAA 44 (200)
T ss_pred CcccCCC--CceeeEE---CCEeHHHHHHHHHH
Confidence 8999984 8999988 58999999998874
No 91
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=67.10 E-value=5 Score=40.37 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=24.6
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+|+||| .+|.++++ .|+++++..++++.
T Consensus 184 ~SsRmG--~~K~ll~~---~Gk~ll~~~l~~l~ 211 (369)
T PRK14490 184 RSSRMG--SDKALLSY---HESNQLVHTAALLR 211 (369)
T ss_pred ccccCC--CCcEEEEE---CCccHHHHHHHHHH
Confidence 999999 59999988 59999998888774
No 92
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=65.07 E-value=5.3 Score=35.79 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=24.7
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+|+||| ..||.++++ .|+++++..++.+.
T Consensus 13 ~s~Rm~-~~~K~ll~~---~g~~ll~~~i~~l~ 41 (193)
T PRK00317 13 RSRRMG-GVDKGLQEL---NGKPLIQHVIERLA 41 (193)
T ss_pred CcccCC-CCCCceeEE---CCEEHHHHHHHHHh
Confidence 789996 369999988 68999999988774
No 93
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=59.50 E-value=12 Score=35.45 Aligned_cols=56 Identities=27% Similarity=0.340 Sum_probs=40.8
Q ss_pred ccCCCCCC--CcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCcc-chHHHHHHHHhcC
Q 017059 12 TRLGSSDP--KGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPF-TDDATRKYFEGHK 85 (378)
Q Consensus 12 tRLG~~~p--Kg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~-T~~~t~~~l~~~~ 85 (378)
-|||++.= |.++|+ -++++.+++++|++....+ =-++|-||.. +++...+++.++.
T Consensus 10 ARmgStRLpgKvLlpL---~~~pmI~~~lervrks~~~---------------d~ivvATS~~~~d~~l~~~~~~~G 68 (241)
T COG1861 10 ARMGSTRLPGKVLLPL---GGEPMIEYQLERVRKSKDL---------------DKIVVATSDKEEDDALEEVCRSHG 68 (241)
T ss_pred ecccCccCCcchhhhc---CCCchHHHHHHHHhccccc---------------cceEEEecCCcchhHHHHHHHHcC
Confidence 47777665 556655 6788999999998754432 1388999988 7777888888765
No 94
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=59.49 E-value=7.4 Score=39.52 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=26.7
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+|||||...||-++++ .|+++++..++.+.
T Consensus 15 ~GsRmg~~~pKqll~l---~GkPll~~tl~~l~ 44 (378)
T PRK09382 15 RSTRFSAEVKKQWLRI---GGKPLWLHVLENLS 44 (378)
T ss_pred CCccCCCCCCeeEEEE---CCeeHHHHHHHHHh
Confidence 8999998899999988 69999998888774
No 95
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=59.45 E-value=8.3 Score=38.80 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=25.1
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+||||| ..||.++++ .|+++++..++++.
T Consensus 15 ~s~Rmg-g~~K~ll~i---~Gkpll~~~i~~l~ 43 (366)
T PRK14489 15 LSRRMN-GRDKALILL---GGKPLIERVVDRLR 43 (366)
T ss_pred cccCCC-CCCCceeEE---CCeeHHHHHHHHHH
Confidence 799996 379999987 68999999998874
No 96
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=54.68 E-value=20 Score=32.43 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=23.9
Q ss_pred ccccccCCCCCCCc--ceeccCCCCCChhHHHHHHHHHH
Q 017059 8 LIQGTRLGSSDPKG--CVNIGLPSGKSLFQLQAERILCV 44 (378)
Q Consensus 8 ~~qGtRLG~~~pKg--~~~i~l~~~ksllql~~e~i~~l 44 (378)
+|+. |+|+++-+| +.++ .||+|+++.++++++.
T Consensus 3 iIpA-R~gS~rlp~Knl~~l---~gkpLi~~~i~~a~~s 37 (217)
T PF02348_consen 3 IIPA-RGGSKRLPGKNLKPL---GGKPLIEYVIERAKQS 37 (217)
T ss_dssp EEEE--SSSSSSTTGGGSEE---TTEEHHHHHHHHHHHT
T ss_pred EEec-CCCCCCCCcchhhHh---CCccHHHHHHHHHHhC
Confidence 4566 999887754 4433 7999999999998764
No 97
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.58 E-value=17 Score=38.80 Aligned_cols=55 Identities=36% Similarity=0.663 Sum_probs=40.4
Q ss_pred ccCCCCCCCcceeccCC-CCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchH--------HHHHHHH
Q 017059 12 TRLGSSDPKGCVNIGLP-SGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD--------ATRKYFE 82 (378)
Q Consensus 12 tRLG~~~pKg~~~i~l~-~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~--------~t~~~l~ 82 (378)
||||-.-|||.+=+|+| +|||+|. |- .| -.+.+|+|.|.-+.=++ .++..|.
T Consensus 330 trLGGKLPKGVLLvGPPGTGKTlLA----RA-----vA----------GEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~ 390 (752)
T KOG0734|consen 330 TRLGGKLPKGVLLVGPPGTGKTLLA----RA-----VA----------GEAGVPFFYASGSEFDEMFVGVGARRVRDLFA 390 (752)
T ss_pred hhccCcCCCceEEeCCCCCchhHHH----HH-----hh----------cccCCCeEeccccchhhhhhcccHHHHHHHHH
Confidence 89999999999999988 7999873 11 12 24678999998766444 4677776
Q ss_pred hcC
Q 017059 83 GHK 85 (378)
Q Consensus 83 ~~~ 85 (378)
+-+
T Consensus 391 aAk 393 (752)
T KOG0734|consen 391 AAK 393 (752)
T ss_pred HHH
Confidence 643
No 98
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=42.69 E-value=14 Score=25.21 Aligned_cols=15 Identities=47% Similarity=1.039 Sum_probs=12.0
Q ss_pred cCCCCCC---CCcEEEEE
Q 017059 84 HKYFGLE---SDQVTFFQ 98 (378)
Q Consensus 84 ~~~Fgl~---~~~v~~f~ 98 (378)
|+|||++ ++||+|+-
T Consensus 4 n~~FGie~~~sdqIWFYG 21 (40)
T PF13106_consen 4 NEWFGIEECKSDQIWFYG 21 (40)
T ss_pred hhhcCccccccccEEEee
Confidence 6799998 58998874
No 99
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=41.58 E-value=48 Score=30.48 Aligned_cols=53 Identities=25% Similarity=0.199 Sum_probs=35.3
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccc-hHHHHHHHHh
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFT-DDATRKYFEG 83 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T-~~~t~~~l~~ 83 (378)
+++||| +|.++++ .|+++++..+++++... .+. .++|-|+..- ++...+++.+
T Consensus 9 ~S~R~~---~K~ll~l---~Gkpli~~~i~~l~~~~--------------~~~-~ivVv~~~~~~~~~i~~~~~~ 62 (233)
T cd02518 9 GSTRLP---GKVLKPL---GGKPLLEHLLDRLKRSK--------------LID-EIVIATSTNEEDDPLEALAKK 62 (233)
T ss_pred CCCCCC---CCccccc---CCccHHHHHHHHHHhCC--------------CCC-eEEEECCCCcccHHHHHHHHH
Confidence 689995 5988876 68999998888775311 112 4666666553 2566777653
No 100
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=39.91 E-value=1.1e+02 Score=31.20 Aligned_cols=154 Identities=14% Similarity=0.222 Sum_probs=94.6
Q ss_pred eEEEecCccchHHHHHHHHhcCCCCCCC--CcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHH
Q 017059 64 HWYIMTSPFTDDATRKYFEGHKYFGLES--DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLED 141 (378)
Q Consensus 64 Pl~IMTS~~T~~~t~~~l~~~~~Fgl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~ 141 (378)
-+++.|=...| ...+++..-..|++++ +.|+++....- .+++ .|.-.+-=.+|.. +..
T Consensus 54 ~I~VltQy~~~-SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~----~~~~---------~wy~Gtadai~Qn------l~~ 113 (393)
T COG0448 54 RIGVLTQYKSH-SLNDHIGRGWPWDLDRKNGGVFILPAQQR----EGGE---------RWYEGTADAIYQN------LLI 113 (393)
T ss_pred eEEEEeccchh-HHHHHhhCCCccccccccCcEEEeCchhc----cCCC---------cceeccHHHHHHh------HHH
Confidence 47788888888 6777777766666654 44444432211 1221 1222222223332 334
Q ss_pred HHHCCceEEEEEecCCCcccccCHH-HhHHHHhcCCcEEEEE--ecccCCCccceeEEEecCCCCeEEEEecCCChhhhh
Q 017059 142 MATRGIKYIDCYGVDNALVRVADPT-FLGYFIDKGVSAGAKV--VRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLAS 218 (378)
Q Consensus 142 l~~~Gi~yi~v~~vDN~l~~~~DP~-~lG~~~~~~~~~~~kv--v~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~ 218 (378)
+.+-+-+|+.|.+.|=+- + .|.. +|=+|.+.++|+.+-| |++..+. .-|++-. +++| .|+|+.|=|.+..
T Consensus 114 i~~~~~eyvlIlsgDhIY-k-mDy~~ml~~H~~~gadiTv~~~~Vp~~eas-~fGim~~-D~~~--~i~~F~eKp~~~~- 186 (393)
T COG0448 114 IRRSDPEYVLILSGDHIY-K-MDYSDMLDFHIESGADVTVAVKEVPREEAS-RFGVMNV-DENG--RIIEFVEKPADGP- 186 (393)
T ss_pred HHhcCCCEEEEecCCEEE-e-cCHHHHHHHHHHcCCCEEEEEEECChHhhh-hcCceEE-CCCC--CEEeeeeccCcCC-
Confidence 557799999999999987 4 4654 8999999999996433 2333333 3565544 3344 6888888777611
Q ss_pred hccCCCCccccccccceeeeEeHHHHHHHhhccc
Q 017059 219 AINQETGRLRFCWSNVCLHMFTLDFLNQVANGLE 252 (378)
Q Consensus 219 ~~~~~~g~l~f~~gNi~~~~~~l~fl~~~~~~~~ 252 (378)
+ +.. .+...+..|+-++|.+++++..
T Consensus 187 ---~-~~~----laSMgiYIf~~~~L~~~L~~~~ 212 (393)
T COG0448 187 ---P-SNS----LASMGIYIFNTDLLKELLEEDA 212 (393)
T ss_pred ---c-ccc----eeeeeeEEEcHHHHHHHHHHHh
Confidence 1 111 3567789999999999987543
No 101
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=38.65 E-value=44 Score=33.27 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=97.5
Q ss_pred ccccCC----CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 10 QGTRLG----SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 10 qGtRLG----~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
.||||= -..||=.+ .|.+++|+||-.++|+..+.. .-.+++.|+..-...+++=|.+-+
T Consensus 11 ~GsRLWPLSR~~~PKQFl--~L~~~~Sllq~T~~R~~~l~~---------------~~~~~vVtne~~~f~v~eql~e~~ 73 (333)
T COG0836 11 SGSRLWPLSRKDYPKQFL--KLFGDLSLLQQTVKRLAFLGD---------------IEEPLVVTNEKYRFIVKEQLPEID 73 (333)
T ss_pred CccccCCcCcccCCccce--eeCCCCcHHHHHHHHHhhcCC---------------ccCeEEEeCHHHHHHHHHHHhhhh
Confidence 789983 36788887 456799999999999865421 224677787776666666665421
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
. -...+ +++|. -.=-++|. |.. +.+......|=.-+.|...|-+.. |.
T Consensus 74 ~------------------~~~~~-illEP-~gRnTApA----IA~-----aa~~~~~~~~d~~~lVlpsDH~I~---d~ 121 (333)
T COG0836 74 I------------------ENAAG-IILEP-EGRNTAPA----IAL-----AALSATAEGGDALVLVLPSDHVIA---DE 121 (333)
T ss_pred h------------------ccccc-eEecc-CCCCcHHH----HHH-----HHHHHHHhCCCcEEEEecCcceec---cH
Confidence 1 00112 33321 11112221 111 112233333434567777777663 33
Q ss_pred -HHhHHH------HhcCCcEEEEEecccCCCccceeEEEecC---CCCeEEEEecCCChhhhhhccCCCCccccccccce
Q 017059 166 -TFLGYF------IDKGVSAGAKVVRKAYPQEKVGVFVRRGK---GGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 235 (378)
Q Consensus 166 -~~lG~~------~~~~~~~~~kvv~K~~~~EkvGvl~~~~~---~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~ 235 (378)
.|.-.. ++++.=+.+=+++. .|.-.=|-|-.-.+ .+-+.|-++-|=|+....+.--++|++. | |-.
T Consensus 122 ~af~~av~~A~~~A~~g~lVTfGI~Pt-~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~-W--NSG 197 (333)
T COG0836 122 EAFLNAVKKAEKAAEEGGIVTFGIPPT-RPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYL-W--NSG 197 (333)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCC-CCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceE-e--ecc
Confidence 333221 12332222333333 35545555543110 1456676677777644332112467654 3 666
Q ss_pred eeeEeHHHHHHHhhcc
Q 017059 236 LHMFTLDFLNQVANGL 251 (378)
Q Consensus 236 ~~~~~l~fl~~~~~~~ 251 (378)
.++|+.+.+-+.++.+
T Consensus 198 mF~Fra~~~l~e~~~~ 213 (333)
T COG0836 198 MFLFRASVFLEELKKH 213 (333)
T ss_pred ceEEEHHHHHHHHHhh
Confidence 6999998886655543
No 102
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=37.18 E-value=25 Score=30.85 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCeeccCCCCccCcEEecccceeeCCCchhhh
Q 017059 324 RLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAIC 365 (378)
Q Consensus 324 ~~~~~~l~~~g~~~~~~~~~~~~~~eisP~~sy~ge~l~~~~ 365 (378)
.+.++||+.||++ +|-+.=++.|||++++.
T Consensus 109 ~~a~~~L~~aG~~------------~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 109 ERAKKWLKNAGVK------------EIFEVSAVTGEGIEELK 138 (143)
T ss_pred HHHHHHHHHcCCC------------CeEEEECCCCcCHHHHH
Confidence 3457999999985 23444478999999873
No 103
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=36.83 E-value=1.2e+02 Score=22.45 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=37.9
Q ss_pred eeEEEecCccchHHHHHHHHhcCCCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHH
Q 017059 63 IHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDM 142 (378)
Q Consensus 63 iPl~IMTS~~T~~~t~~~l~~~~~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l 142 (378)
.+++-.+...+.+..++++.+. ..+..+|.+-.+|+. -|+-+-..+|.++|-|+.+
T Consensus 28 ~~~~~v~~~~~~~~~~~~l~~~------------~g~~~vP~v~i~g~~------------igg~~~~~~~~~~g~l~~~ 83 (84)
T TIGR02180 28 YEVVELDQLSNGSEIQDYLEEI------------TGQRTVPNIFINGKF------------IGGCSDLLALYKSGKLAEL 83 (84)
T ss_pred CEEEEeeCCCChHHHHHHHHHH------------hCCCCCCeEEECCEE------------EcCHHHHHHHHHcCChhhh
Confidence 5566666666777788888763 223467888767753 2445667778888888765
No 104
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=34.87 E-value=60 Score=34.11 Aligned_cols=184 Identities=16% Similarity=0.159 Sum_probs=95.7
Q ss_pred ccccCC----CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 10 QGTRLG----SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 10 qGtRLG----~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
.||||= ...||-++|+ -.++|+||..++|+..+ +..=++ |.|+..-.+.+++-+.+.+
T Consensus 15 ~GtRlwPlS~~~~PKq~l~l--~~~~sllq~t~~r~~~~---------------~~~~~i-ivt~~~~~~~v~~ql~~~~ 76 (478)
T PRK15460 15 SGSRLWPLSRVLYPKQFLCL--KGDLTMLQTTICRLNGV---------------ECESPV-VICNEQHRFIVAEQLRQLN 76 (478)
T ss_pred CccccccCCCCCCCcceeEC--CCCCCHHHHHHHHHHhC---------------CCCCcE-EEeCHHHHHHHHHHHHhcC
Confidence 799996 1359999976 44689999999987542 122245 5588766666766666422
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHC--C-ceEEEEEecCCCcccc
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR--G-IKYIDCYGVDNALVRV 162 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~--G-i~yi~v~~vDN~l~~~ 162 (378)
. . ..++++| |..--++|.- .+.|+ .+.++ + -.-+.|...|....
T Consensus 77 ~---~-----------------~~~ii~E-P~~rnTApai---alaa~-------~~~~~~~~~~~~v~vlPaDH~I~-- 123 (478)
T PRK15460 77 K---L-----------------TENIILE-PAGRNTAPAI---ALAAL-------AAKRHSPESDPLMLVLAADHVIA-- 123 (478)
T ss_pred C---c-----------------cccEEec-CCCCChHHHH---HHHHH-------HHHHhcCCCCCeEEEeccccccC--
Confidence 1 0 1133332 2222233321 11121 12222 2 24678888888763
Q ss_pred cCHH-Hh-----HHHH-hcCCcEEEEEecccCCCccceeEEEecC-C-----CCeEEEEecCCChhh-hhhccCCCCccc
Q 017059 163 ADPT-FL-----GYFI-DKGVSAGAKVVRKAYPQEKVGVFVRRGK-G-----GPLTVVEYSELDPSL-ASAINQETGRLR 228 (378)
Q Consensus 163 ~DP~-~l-----G~~~-~~~~~~~~kvv~K~~~~EkvGvl~~~~~-~-----g~~~vvEYsel~~~~-~~~~~~~~g~l~ 228 (378)
|.. |. +... +.+.=+.+=+.+ +.|.-.=|-|-.-.. + +-..|....|=|+.. +..+- .+|.+
T Consensus 124 -d~~~F~~~i~~A~~~A~~~~lvt~GI~P-t~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl-~~G~y- 199 (478)
T PRK15460 124 -DEDAFRAAVRNAMPYAEAGKLVTFGIVP-DLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYV-ASGEY- 199 (478)
T ss_pred -CHHHHHHHHHHHHHHHhcCCEEEEecCC-CCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHH-HcCCE-
Confidence 332 32 2221 123222233333 346666666643211 0 224555555555532 22222 24433
Q ss_pred cccccceeeeEeHHHHHHHhhc
Q 017059 229 FCWSNVCLHMFTLDFLNQVANG 250 (378)
Q Consensus 229 f~~gNi~~~~~~l~fl~~~~~~ 250 (378)
|| |..++.++.+.+-+.+++
T Consensus 200 ~W--NsGiF~~~a~~~l~~~~~ 219 (478)
T PRK15460 200 YW--NSGMFLFRAGRYLEELKK 219 (478)
T ss_pred EE--ecceeheeHHHHHHHHHH
Confidence 45 788899999988766653
No 105
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=32.18 E-value=84 Score=29.93 Aligned_cols=74 Identities=27% Similarity=0.272 Sum_probs=46.8
Q ss_pred cCCCCCChhHHHHHHHHHH-----------HHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCCCCCcE
Q 017059 26 GLPSGKSLFQLQAERILCV-----------QRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQV 94 (378)
Q Consensus 26 ~l~~~ksllql~~e~i~~l-----------~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl~~~~v 94 (378)
....|+++.+.-+||..+- ++.+..... .+. -++|||.+-..-|....|--.-.+++.+.+
T Consensus 23 adI~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~-----~G~---~avmT~~~h~SGTdR~~Ev~~~l~~~~~~i 94 (247)
T COG1212 23 ADIGGKPMIVRVAERALKSGADRVVVATDDERIAEAVQA-----FGG---EAVMTSKDHQSGTDRLAEVVEKLGLPDDEI 94 (247)
T ss_pred hhhCCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-----hCC---EEEecCCCCCCccHHHHHHHHhcCCCcceE
Confidence 3347999999999887633 111111111 122 589999996555555554444456667888
Q ss_pred EEEEcCceeEEec
Q 017059 95 TFFQQGTIPCVSK 107 (378)
Q Consensus 95 ~~f~Q~~~P~~~~ 107 (378)
.+=.|+-.|++..
T Consensus 95 IVNvQGDeP~i~p 107 (247)
T COG1212 95 IVNVQGDEPFIEP 107 (247)
T ss_pred EEEccCCCCCCCH
Confidence 8888998888753
No 106
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=29.08 E-value=48 Score=30.71 Aligned_cols=109 Identities=23% Similarity=0.215 Sum_probs=64.3
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+.||||| .+|-++|+ .|+++....+++.+.- +.. -+++.|+....+.-...+..-
T Consensus 14 GrssRmG--~~KlLap~---~g~plv~~~~~~a~~a---------------~~~-~vivV~g~~~~~~~~a~~~~~---- 68 (199)
T COG2068 14 GRSSRMG--QPKLLAPL---DGKPLVRASAETALSA---------------GLD-RVIVVTGHRVAEAVEALLAQL---- 68 (199)
T ss_pred cccccCC--Ccceeccc---CCCcHHHHHHHHHHhc---------------CCC-eEEEEeCcchhhHHHhhhccC----
Confidence 3899999 89999877 8999999998877531 111 377888877434333333321
Q ss_pred CCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
.+ .+..+|+=.=|+-.+|+. | +..+...+ ..+.+..-|=+.+...+..-+
T Consensus 69 ----~~-----------------------~~v~npd~~~Gls~Sl~a-g-~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl 118 (199)
T COG2068 69 ----GV-----------------------TVVVNPDYAQGLSTSLKA-G-LRAADAEG-DGVVLMLGDMPQVTPATVRRL 118 (199)
T ss_pred ----Ce-----------------------EEEeCcchhhhHhHHHHH-H-HHhcccCC-CeEEEEeCCCCCCCHHHHHHH
Confidence 11 122222222223334432 1 33343344 689999999998777776655
Q ss_pred HHHH
Q 017059 169 GYFI 172 (378)
Q Consensus 169 G~~~ 172 (378)
....
T Consensus 119 ~~~~ 122 (199)
T COG2068 119 IAAF 122 (199)
T ss_pred HHhc
Confidence 4443
No 107
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=28.03 E-value=41 Score=31.29 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=23.6
Q ss_pred cccccCC---CCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 9 IQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 9 ~qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+.|||+- ++-||+++.| .|+.+.|-++++++
T Consensus 9 G~gsR~~plT~~tpK~LlkV---~g~plIErqI~~L~ 42 (231)
T COG4750 9 GLGSRFVPLTQSTPKSLLKV---NGEPLIERQIEQLR 42 (231)
T ss_pred ccccccccccccCChHHHHh---cCcccHHHHHHHHH
Confidence 4789974 6778888876 67888888777774
No 108
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=27.69 E-value=86 Score=29.23 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=23.3
Q ss_pred ceeEEEec--CccchHHHHHHHHhcCCCCCCCCcEE
Q 017059 62 AIHWYIMT--SPFTDDATRKYFEGHKYFGLESDQVT 95 (378)
Q Consensus 62 ~iPl~IMT--S~~T~~~t~~~l~~~~~Fgl~~~~v~ 95 (378)
.+|+++.| |..+.++..+.|.++-.+.++.++|.
T Consensus 30 g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~ii 65 (236)
T TIGR01460 30 GKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQII 65 (236)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHee
Confidence 46788887 55688889999988533444555543
No 109
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=23.79 E-value=11 Score=34.42 Aligned_cols=26 Identities=38% Similarity=0.773 Sum_probs=10.5
Q ss_pred ccccCCceEE-EEEecCcceeccccCC
Q 017059 283 AFPYAPSTAL-FEVLREEEFAPVKNAN 308 (378)
Q Consensus 283 ~~~~~~~~~~-~~V~R~~eFsPvKn~~ 308 (378)
+|.+.+...| =.+.|.+.|+||||+.
T Consensus 150 a~df~~E~~v~q~~l~~d~~sPi~na~ 176 (201)
T PF09147_consen 150 AFDFMPESLVIQSSLRPDNFSPIKNAQ 176 (201)
T ss_dssp SS-B--HHHHSS-S---TT--SBTTEE
T ss_pred cccccchhHHHhhhccCCCcCccccce
Confidence 4444443333 3334889999999983
No 110
>PHA03050 glutaredoxin; Provisional
Probab=23.35 E-value=4.1e+02 Score=21.72 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=26.2
Q ss_pred cCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHC
Q 017059 99 QGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR 145 (378)
Q Consensus 99 Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~ 145 (378)
|..+|.+-.+|+.+ |..+-..+|+++|-|+.+++.
T Consensus 67 ~~tVP~IfI~g~~i------------GG~ddl~~l~~~g~L~~~l~~ 101 (108)
T PHA03050 67 GRTVPRIFFGKTSI------------GGYSDLLEIDNMDALGDILSS 101 (108)
T ss_pred CCCcCEEEECCEEE------------eChHHHHHHHHcCCHHHHHHH
Confidence 45788887777654 556667888889988887765
No 111
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.79 E-value=50 Score=33.59 Aligned_cols=24 Identities=42% Similarity=0.762 Sum_probs=21.1
Q ss_pred ccCCCCCCCcceeccCC-CCCChhH
Q 017059 12 TRLGSSDPKGCVNIGLP-SGKSLFQ 35 (378)
Q Consensus 12 tRLG~~~pKg~~~i~l~-~~ksllq 35 (378)
.+||.+.|||.+=.|+| +||||+.
T Consensus 178 ~~~GI~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 178 EELGIDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred HHcCCCCCCceEeeCCCCCcHHHHH
Confidence 47999999999988888 7999984
No 112
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.64 E-value=4.3e+02 Score=24.45 Aligned_cols=100 Identities=20% Similarity=0.191 Sum_probs=57.9
Q ss_pred CChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCcc-chHHHHHHHHhcCCCCCCCCcEEEEEcCceeEEecC-
Q 017059 31 KSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPF-TDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKD- 108 (378)
Q Consensus 31 ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~-T~~~t~~~l~~~~~Fgl~~~~v~~f~Q~~~P~~~~~- 108 (378)
-.+.+-.++.|.+|..-+. +..||++--.-+. -.++-+..|++-=.-|+++. =-+|..+-.+..+
T Consensus 50 ~~~~~~li~Ni~~Lr~~~~----------~~giPVvyTaqp~~qs~~draLL~d~WGpgl~~~---p~~~~vv~~l~P~~ 116 (218)
T COG1535 50 CPLMEQLIANIAKLRIWCK----------QAGIPVVYTAQPGEQSPEDRALLKDFWGPGLTAS---PEQQKVVDELAPGA 116 (218)
T ss_pred CccHHHHHHHHHHHHHHHH----------HcCCcEEEEecCCcCCHHHHHHHHHhcCCCCCCC---hhhhhhHHhcCCCC
Confidence 3356666777777776654 3457777766666 44556667765322344332 1122222222211
Q ss_pred CcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEec
Q 017059 109 GRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 155 (378)
Q Consensus 109 g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~v 155 (378)
+.++| .+| -|+|.++|.++++|++.|+..+.|..|
T Consensus 117 ~D~vL-~kw-----------rYsAF~~s~Llq~lr~~grdQLIItGV 151 (218)
T COG1535 117 DDTVL-TKW-----------RYSAFHRSPLLQMLREKGRDQLIITGV 151 (218)
T ss_pred CceEE-eee-----------ehhhhhcChHHHHHHHcCCCcEEEeeh
Confidence 11111 111 289999999999999999998877655
No 113
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=20.32 E-value=2.1e+02 Score=29.19 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=74.9
Q ss_pred CCCCCcceecc--CCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCCCCCc
Q 017059 16 SSDPKGCVNIG--LPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQ 93 (378)
Q Consensus 16 ~~~pKg~~~i~--l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl~~~~ 93 (378)
.||||-.=|-- ..+|+--|+-.++-|..|+. +++..-..+++...|-+...+++....-+| ...
T Consensus 121 iDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~------------~~v~~~~~~vv~~~n~~~~~ei~~~l~~~g--~~~ 186 (378)
T COG0641 121 IDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQA------------HGVDFNTLTVVNRQNVLHPEEIYHFLKSEG--SKF 186 (378)
T ss_pred ccCchHhccccccCCCCCccHHHHHHHHHHHHH------------cCCcEEEEEEEchhHhhCHHHHHHHHHHcc--cce
Confidence 47888544332 23588889999988887765 356666777788777777777766655566 233
Q ss_pred EEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcc
Q 017059 94 VTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 160 (378)
Q Consensus 94 v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~ 160 (378)
+.| .|.+...+.-. ....-...|-+-|..... +++.|...++.-+++...|+++.
T Consensus 187 i~f-----ip~~~~~~~~~--~~~~~~~~~~~~~~fl~~-----~~~~~~~~~~~~i~i~~f~~~~~ 241 (378)
T COG0641 187 IQF-----IPLVESDNRGD--SLLEFSVTAEEYGQFLIA-----IFDEWVRHDVGRIFIQNFDQLLK 241 (378)
T ss_pred EEE-----EecccCCCCCc--cccccccCHHHHHHHHHH-----HHHHHHHhcCCeeeehhHHHHHH
Confidence 444 77775332210 011222334444555544 48899999989999988877763
Done!