Query 017059
Match_columns 378
No_of_seqs 154 out of 679
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:15:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oc9_A UDP-N-acetylglucosamine 100.0 9E-102 3E-106 773.7 32.5 351 10-376 45-404 (405)
2 2yqc_A UDP-N-acetylglucosamine 100.0 3.4E-93 1.2E-97 731.3 31.6 357 10-376 113-486 (486)
3 1jv1_A Glcnac1P uridyltransfer 100.0 1.2E-88 3.9E-93 700.2 35.1 360 10-377 112-493 (505)
4 3gue_A UTP-glucose-1-phosphate 100.0 2.9E-80 9.8E-85 628.2 21.7 296 9-327 85-393 (484)
5 3ogz_A UDP-sugar pyrophosphory 100.0 1.1E-78 3.9E-83 629.5 25.1 331 9-359 123-503 (630)
6 3r3i_A UTP--glucose-1-phosphat 100.0 6.5E-78 2.2E-82 615.0 18.3 286 10-326 137-432 (528)
7 2oeg_A UTP-glucose-1-phosphate 100.0 1E-72 3.6E-77 579.4 16.4 315 10-353 85-419 (505)
8 2i5k_A UTP--glucose-1-phosphat 100.0 5.7E-67 2E-71 536.8 20.9 325 9-376 101-433 (488)
9 2icy_A Probable UTP-glucose-1- 100.0 1.7E-66 5.9E-71 530.6 15.2 312 10-364 89-403 (469)
10 3st8_A Bifunctional protein GL 97.8 0.00041 1.4E-08 70.7 15.4 179 10-250 22-204 (501)
11 4ecm_A Glucose-1-phosphate thy 97.0 0.021 7.2E-07 53.0 15.8 169 10-246 34-205 (269)
12 3oam_A 3-deoxy-manno-octuloson 96.9 0.0071 2.4E-07 55.9 12.0 177 10-249 12-197 (252)
13 1fxo_A Glucose-1-phosphate thy 96.5 0.027 9.4E-07 53.2 13.0 171 10-247 12-186 (293)
14 1mc3_A Glucose-1-phosphate thy 96.5 0.038 1.3E-06 52.4 13.6 172 10-247 13-187 (296)
15 1lvw_A Glucose-1-phosphate thy 96.4 0.082 2.8E-06 50.1 15.3 171 10-247 13-187 (295)
16 3tqd_A 3-deoxy-manno-octuloson 95.9 0.073 2.5E-06 49.5 12.0 173 10-249 19-206 (256)
17 4fce_A Bifunctional protein GL 95.8 0.81 2.8E-05 45.0 20.1 168 10-249 18-188 (459)
18 3brk_X Glucose-1-phosphate ade 95.6 0.21 7.2E-06 49.1 14.7 192 10-249 22-221 (420)
19 2qh5_A PMI, ALGA, mannose-6-ph 95.5 0.15 5E-06 48.3 12.6 180 10-249 14-203 (308)
20 3k8d_A 3-deoxy-manno-octuloson 95.3 0.31 1E-05 45.4 13.9 173 10-249 28-213 (264)
21 1hm9_A GLMU, UDP-N-acetylgluco 95.2 0.23 7.7E-06 49.4 13.5 172 10-249 21-194 (468)
22 1yp2_A Glucose-1-phosphate ade 95.2 0.34 1.2E-05 48.0 14.8 199 10-249 30-245 (451)
23 3juk_A UDP-glucose pyrophospho 95.1 0.23 7.7E-06 46.0 12.3 187 10-246 12-216 (281)
24 2v0h_A Bifunctional protein GL 95.0 0.45 1.5E-05 46.9 15.0 167 10-249 15-185 (456)
25 3pnn_A Conserved domain protei 94.5 0.45 1.5E-05 44.9 13.0 198 10-247 15-228 (303)
26 3f1c_A Putative 2-C-methyl-D-e 94.3 0.27 9.2E-06 44.8 10.4 57 10-84 13-70 (246)
27 1ezi_A CMP-N-acetylneuraminic 93.5 0.51 1.8E-05 42.0 10.6 120 10-186 14-137 (228)
28 1h7e_A 3-deoxy-manno-octuloson 93.0 0.42 1.4E-05 42.9 9.4 164 10-248 12-187 (245)
29 1qwj_A Cytidine monophospho-N- 92.7 0.57 1.9E-05 42.0 9.7 116 10-183 13-132 (229)
30 1vic_A 3-deoxy-manno-octuloson 92.3 3.1 0.00011 37.8 14.4 175 10-248 12-200 (262)
31 2vsh_A TARI, 2-C-methyl-D-eryt 92.1 0.7 2.4E-05 41.0 9.5 56 10-83 12-68 (236)
32 2x65_A Mannose-1-phosphate gua 91.9 1.2 4.2E-05 42.7 11.5 179 10-249 11-205 (336)
33 4fcu_A 3-deoxy-manno-octuloson 91.7 2.4 8.2E-05 38.9 12.9 171 10-248 11-197 (253)
34 2e3d_A UTP--glucose-1-phosphat 90.4 1.5 5.2E-05 40.8 10.3 54 10-83 18-74 (302)
35 3q80_A 2-C-methyl-D-erythritol 89.7 0.48 1.6E-05 43.2 6.0 160 10-250 17-180 (231)
36 2xwl_A 2-C-methyl-D-erythritol 88.6 0.52 1.8E-05 41.5 5.2 54 10-81 12-65 (223)
37 3rsb_A Adenosylcobinamide-phos 87.1 0.5 1.7E-05 41.0 4.1 54 9-83 9-62 (196)
38 3d5n_A Q97W15_sulso; NESG, SSR 86.2 0.28 9.5E-06 43.1 1.9 27 10-41 12-38 (197)
39 1tzf_A Glucose-1-phosphate cyt 86.1 0.86 2.9E-05 41.1 5.3 179 10-244 12-199 (259)
40 2waw_A MOBA relate protein; un 86.0 0.44 1.5E-05 41.0 3.1 103 10-172 15-118 (199)
41 1vpa_A 2-C-methyl-D-erythritol 85.1 0.43 1.5E-05 42.5 2.7 30 10-42 23-52 (234)
42 3ngw_A Molybdopterin-guanine d 85.0 1.1 3.9E-05 39.8 5.4 28 9-41 9-36 (208)
43 2yc3_A 2-C-methyl-D-erythritol 84.4 0.41 1.4E-05 42.5 2.2 30 10-42 14-43 (228)
44 1i52_A 4-diphosphocytidyl-2-C- 84.1 0.49 1.7E-05 42.3 2.6 30 10-42 17-46 (236)
45 2wee_A MOBA-related protein; u 82.0 0.7 2.4E-05 39.7 2.7 103 10-172 15-118 (197)
46 1vgw_A 4-diphosphocytidyl-2C-m 81.3 0.57 1.9E-05 41.6 1.9 54 10-83 16-69 (231)
47 1e5k_A Molybdopterin-guanine d 81.3 0.87 3E-05 40.1 3.0 29 10-42 16-44 (201)
48 2y6p_A 3-deoxy-manno-octuloson 81.1 1.5 5.2E-05 38.8 4.6 166 10-249 12-182 (234)
49 1jyk_A LICC protein, CTP:phosp 77.4 1.2 4E-05 40.7 2.7 31 10-43 35-68 (254)
50 2ux8_A Glucose-1-phosphate uri 77.1 2.4 8.3E-05 39.3 4.9 54 10-83 24-80 (297)
51 2px7_A 2-C-methyl-D-erythritol 76.8 1.1 3.7E-05 40.4 2.3 27 10-40 35-61 (236)
52 2xme_A CTP-inositol-1-phosphat 73.2 3 0.0001 37.0 4.2 29 10-42 28-56 (232)
53 2e8b_A Probable molybdopterin- 67.6 0.73 2.5E-05 40.5 -1.2 28 10-42 24-51 (201)
54 1w55_A ISPD/ISPF bifunctional 63.4 3.3 0.00011 40.4 2.5 30 10-42 13-42 (371)
55 2pa4_A UTP-glucose-1-phosphate 62.0 4 0.00014 38.5 2.8 53 10-82 22-77 (323)
56 4evw_A Nucleoside-diphosphate- 60.9 1 3.5E-05 41.3 -1.6 31 9-42 8-41 (255)
57 2ggo_A 401AA long hypothetical 60.1 4.1 0.00014 39.2 2.5 159 10-247 10-171 (401)
58 2dpw_A Hypothetical protein TT 53.4 6.8 0.00023 34.8 2.6 28 11-42 16-43 (232)
59 2cu2_A Putative mannose-1-phos 53.0 5.7 0.0002 37.9 2.2 176 10-249 12-202 (337)
60 3h8q_A Thioredoxin reductase 3 24.2 1E+02 0.0035 23.8 4.9 35 99-145 68-102 (114)
No 1
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=9.4e-102 Score=773.73 Aligned_cols=351 Identities=34% Similarity=0.594 Sum_probs=331.4
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhh-ccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQV-TSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~-~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
||||||+++||+|+||+++++|||||++++||+++|+++.++ ++ .++.|||+||||+.||++|++||++|+|||
T Consensus 45 ~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~-----~~~~Ip~~IMtS~~t~e~t~~~f~~~~~fG 119 (405)
T 3oc9_A 45 QGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQ-----KNVMIHWFLMTNEETIEEINNYFKEHQYFG 119 (405)
T ss_dssp BCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCC-----SCCCCEEEEEECTTTHHHHHHHHHHTGGGG
T ss_pred CcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccc-----cCCCCCEEEEeCCccHHHHHHHHHhCcccC
Confidence 999999999999999999999999999999999999998775 32 468899999999999999999999999999
Q ss_pred CCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
+++++|++|+|+++||++.+|+++++++++++|+|+||||+|.+|+++|+||+|.++|++|++|+|+||+|++++||.|+
T Consensus 120 l~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~~Dp~~l 199 (405)
T 3oc9_A 120 LSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMI 199 (405)
T ss_dssp SCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCSSCHHHH
T ss_pred CCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHHh
Q 017059 169 GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVA 248 (378)
Q Consensus 169 G~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~~ 248 (378)
||++++++++++||++|+.|+|++|+||++ ||+++||||+|+|++ ++.. ..+|.+.|+++||+||+|+++||++++
T Consensus 200 g~~~~~~~d~~~kvv~k~~~dek~Gvl~~~--dg~~~vvEysei~~e-~e~~-~~~g~l~fn~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 200 GYMDLLQSEICIKIVKKGFKEEKVGVLVKE--QERIKVVEYTELTDE-LNKQ-LSNGEFIYNCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp HHHHHTTCSEEEEEEECCSTTCSCCEEEEE--TTEEEEECGGGCCTT-TTCB-CTTSCBSSCEEEEEEEEEEHHHHHHHT
T ss_pred HHHHHcCCCEEEEEEECCCCCCccceEEEE--CCeeEEEEEeeCCHH-Hhhc-CCCCceeeccceeEeeecCHHHHHHhh
Confidence 999999999999999999999999999997 799999999999999 5543 458999999999999999999999988
Q ss_pred hccccCccceeeecccCCCCC--------CcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCHHHHHH
Q 017059 249 NGLEKDSVYHLAEKKIPSIHG--------QTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARL 320 (378)
Q Consensus 249 ~~~~~~lp~h~a~Kkip~~~~--------~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~ 320 (378)
+..||||+|+|||||+|+ ++||+|||+||||+|++++++.+++|+|++|||||||++|...|||+|||+
T Consensus 276 ---~~~l~~h~a~Kkip~~d~~g~~~~p~~~ngiklE~fifd~f~~~~~~~~~eV~R~~eF~PlKn~~g~~~dsp~tar~ 352 (405)
T 3oc9_A 276 ---EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPLATKVSIFEIQRFIEFSALKNSLNESFDNVNTVKR 352 (405)
T ss_dssp ---TCCCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCSCEEEEECCHHHHCCBCCCCTTSSSSSHHHHHH
T ss_pred ---hccCCcEEeccccCccCCCCCCcccCCcceeehHHHHHHHHHhccceEEEEEChHhcccceecCCCCCCCCHHHHHH
Confidence 347999999999999872 379999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeccCCCCccCcEEecccceeeCCCchhhhcCcEecCCccc
Q 017059 321 LVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEI 376 (378)
Q Consensus 321 ~l~~~~~~~l~~~g~~~~~~~~~~~~~~eisP~~sy~ge~l~~~~~~~~~~~p~~~ 376 (378)
|++++|++||+++|+++.++.+ ..|||||++||+||||++ ++|++|+.|.++
T Consensus 353 ~l~~~~~~wl~~ag~~~~~~~~---~~~Eispl~sy~ge~l~~-~~~~~~~~p~~~ 404 (405)
T 3oc9_A 353 DWYRLNIYYLKKAGAIVDDSKS---PICEISFRKSFEEEGLKE-FKGKTIQLPFIL 404 (405)
T ss_dssp HHHHHHHHHHHHTTCEEECSSC---CCEEECTTTCSSSGGGGG-GTTCEEESCEEE
T ss_pred HHHHHHHHHHHHCCCEEcCCCC---ccEEeCcccccCccCccc-cCCcEecCcccc
Confidence 9999999999999999975432 469999999999999999 699999999875
No 2
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=3.4e-93 Score=731.28 Aligned_cols=357 Identities=45% Similarity=0.739 Sum_probs=331.4
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
||||||++.||+|+||+++++|||||+++++|+++++++.++++. ...+.|||+||||+.||+.|++||++|+|||+
T Consensus 113 ~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~---~~~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl 189 (486)
T 2yqc_A 113 QGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKS---TKKPIINWYIMTSGPTRNATESFFIENNYFGL 189 (486)
T ss_dssp BCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTC---SSCCCCEEEEEECGGGHHHHHHHHHHTGGGGS
T ss_pred ccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCC---CcCCccCEEEEECCCCHHHHHHHHhhccccCC
Confidence 999999999999999999999999999999999999998766531 14588999999999999999999999999999
Q ss_pred CCCcEEEEEcCceeEEecCC-cccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDG-RFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g-~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
+.++|+||+|+++||++.|| +++++++++++|+|+||||+|.+|+++|+|++|.++|++|++|+|+||+|++++||.|+
T Consensus 190 ~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~l 269 (486)
T 2yqc_A 190 NSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFI 269 (486)
T ss_dssp CGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCHHHH
T ss_pred CcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccCHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCC--CccccccccceeeeEeHHHHHH
Q 017059 169 GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQET--GRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 169 G~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~--g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
||++.++++++++|++|+.|+|++|++|++..||+++|+||+|+|++.+..+++ + |.+.|+++|||||||++++|++
T Consensus 270 g~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~~~~-~~~~~~~~~~~Ni~~~~~~l~~L~~ 348 (486)
T 2yqc_A 270 GFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELANKKDP-QDSSKLFLRAANIVNHYYSVEFLNK 348 (486)
T ss_dssp HHHHHHTCSEEEEEEECCSTTCCCCEEEEETTTTEEEEECGGGSCHHHHHCEET-TEEEEESSCEEEEEEEEEEHHHHHH
T ss_pred HHHHHcCCCEEEEEEEcCCCCCceeEEEEEecCCCEEEEEEecCCHHHhhcccc-cccccccccceeEEEEEEeHHHHHH
Confidence 999999999999999999999999999987336899999999999998876543 3 6788889999999999999999
Q ss_pred HhhccccC---ccceeeecccCCCCC---------CcceeeehhhhhhccccCC--ceEEEEEecCcceeccccCCCCCC
Q 017059 247 VANGLEKD---SVYHLAEKKIPSIHG---------QTVGFKLEQFIFDAFPYAP--STALFEVLREEEFAPVKNANGSNF 312 (378)
Q Consensus 247 ~~~~~~~~---lp~h~a~Kkip~~~~---------~~~~~klE~fifD~~~~~~--~~~~~~V~R~~eFsPvKn~~g~~~ 312 (378)
++...... ||+|++.|||||+|. .+||+|||+||||+|++++ ++.+++|+|++|||||||++|...
T Consensus 349 ~l~~~~~~~~~lp~~v~~Kki~~~d~~~g~~~~p~~pn~~klE~~~~d~~~~~~l~~~~~~~V~R~~~FsPvKn~~~~~~ 428 (486)
T 2yqc_A 349 MIPKWISSQKYLPFHIAKKKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFPSVELNKFGCLEVDRLDEFSPLKNADGAKN 428 (486)
T ss_dssp HHHHHTTCTTTSCCEEEEECCCEECTTTCCEECCSSCCEEEEECCGGGGGGGSCGGGEEEEEECHHHHCCBCCSCTTSSS
T ss_pred HHHhhcCcccCCcceEeccccCccccccCeeccCCCCCeeeeeehHhhHHhhcccCceEEEEECcccceeeecCCCCCCC
Confidence 66554456 999999999999872 4689999999999999999 999999999999999999999889
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCeeccCCCCccCcEEecccceeeCCCchhhhcCcEecCCccc
Q 017059 313 DTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEI 376 (378)
Q Consensus 313 dsp~ta~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~eisP~~sy~ge~l~~~~~~~~~~~p~~~ 376 (378)
|||+|||+||+++|++||++||+++.++ .+|||||++||+||||+ .++||+|+.|.+|
T Consensus 429 dsp~ta~~~l~~~~~~~l~~aG~~~~~~-----~~~eisp~~sy~ge~l~-~~~~~~~~~~~~~ 486 (486)
T 2yqc_A 429 DTPTTCRNHYLERSSKWVIQNGGVIDNQ-----GLVEVDSKTSYGGEGLE-FVNGKHFKNGDII 486 (486)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCEECTT-----CCCBCCTTTCSSSTTCG-GGTTCEECTTCBC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCeecCC-----CcEEEcceeeECCCCch-hhcCccccCCccC
Confidence 9999999999999999999999998643 35999999999999999 6699999999875
No 3
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=1.2e-88 Score=700.16 Aligned_cols=360 Identities=48% Similarity=0.790 Sum_probs=333.7
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
||||||++.||+|+||++++|+||||+++++|+++|++|.+.++ ..+.|||+||||+.||+.|++||++|+|||+
T Consensus 112 ~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G-----~~~~ip~vImtS~~t~e~t~~~f~~~~~fGl 186 (505)
T 1jv1_A 112 QGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYG-----NKCIIPWYIMTSGRTMESTKEFFTKHKYFGL 186 (505)
T ss_dssp CCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHS-----SCCCCCEEEEECTTTHHHHHHHHHHTGGGGS
T ss_pred ccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcC-----CCccceEEEEecCCCHHHHHHHHHhhhhcCC
Confidence 99999999999999999999999999999999999999876653 3478999999999999999999999999999
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHhH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLG 169 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~lG 169 (378)
++++|++|+|+++||++.+|+++++++++++|+|+||||+|.+|.++|++++|+++|++|++|+|+||+|++++||.++|
T Consensus 187 ~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg 266 (505)
T 1jv1_A 187 KKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIG 266 (505)
T ss_dssp CGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHH
T ss_pred CcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHHhh
Q 017059 170 YFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN 249 (378)
Q Consensus 170 ~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~~~ 249 (378)
|+..++++++++|++|+.++|++|++|+. +|+++||||+|+|++.++.++ .+|.+.|+.+|||||||++++|+++.+
T Consensus 267 ~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~--dg~~~vvEy~E~p~~~~~~~~-~~g~~~~~~~N~~~~~f~l~~L~~i~~ 343 (505)
T 1jv1_A 267 FCIQKGADCGAKVVEKTNPTEPVGVVCRV--DGVYQVVEYSEISLATAQKRS-SDGRLLFNAGNIANHFFTVPFLRDVVN 343 (505)
T ss_dssp HHHHTTCSEEEEEEECCSTTCSCCEEEEE--TTEEEEECGGGSCHHHHHCBC-TTSSBSSCEEEEEEEEEEHHHHHHHHH
T ss_pred HHHHcCCCEEEEEEEccCCccCcceEEEE--CCeEEEEEEeeCCHHHhhhcc-cccccccceeeEEEEEecHHHHHHHHH
Confidence 99999999999999999999999999997 799999999999999887664 468888999999999999999999987
Q ss_pred ccccCccceeeecccCCCCC--------CcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCC-CCCHHHHHH
Q 017059 250 GLEKDSVYHLAEKKIPSIHG--------QTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSN-FDTPDSARL 320 (378)
Q Consensus 250 ~~~~~lp~h~a~Kkip~~~~--------~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~-~dsp~ta~~ 320 (378)
.....+|||++.||+||+|+ .+||+|||+||||+|++++++.+++|+|++|||||||++|.. .|||+|||+
T Consensus 344 ~~~~~l~~hv~~Kkip~~d~~g~~v~P~~pn~~klE~~i~d~~~~~~~~~~~~V~R~~~FsPvKn~~~~~~~dsp~ta~~ 423 (505)
T 1jv1_A 344 VYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARH 423 (505)
T ss_dssp TTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCSSEEEEEECHHHHCCBCCSCTTSSSSSSHHHHHH
T ss_pred hhcccCCceecccccccccCCCCCcCCCCCCceeHHHHHHHHHhhcCceEEEEECcccceeeccCCCCCCCCCCHHHHHH
Confidence 65567999999999999873 469999999999999999999999999999999999999987 899999999
Q ss_pred HHHHHHHHHHHHcCCeeccCC-------------CCccCcEEecccceeeCCCchhhhcCcEecCCcccc
Q 017059 321 LVLRLHTRWVIAAGGFLTHSV-------------PLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEIG 377 (378)
Q Consensus 321 ~l~~~~~~~l~~~g~~~~~~~-------------~~~~~~~eisP~~sy~ge~l~~~~~~~~~~~p~~~~ 377 (378)
||+++|++||++||+++.++. ......|||||++||+||||+++++||+|+.|.++.
T Consensus 424 ~l~~~~~~~l~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~Eisp~~sy~ge~l~~~~~~~~~~~~~~~~ 493 (505)
T 1jv1_A 424 ALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESYVADKEFHAPLIID 493 (505)
T ss_dssp HHHHHHHHHHHHTTCEEBCTTCCBCCSSCCCCSTTCCCCCEEECTTTCSSSCSCHHHHTTCEECSSEEEE
T ss_pred HHHHHHHHHHHHCCCeecccccccccccccccccccCCCeEEECCccccCCCCchHHhcCCccCCCceec
Confidence 999999999999999983221 000135999999999999999999999999999863
No 4
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=2.9e-80 Score=628.24 Aligned_cols=296 Identities=20% Similarity=0.224 Sum_probs=270.6
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+||||||+++|||++|++ +++||||+++|||++++++ +++.|||+||||+.||++|++||++|+|||
T Consensus 85 GlGTRLG~~~pKg~~~v~--sgksflql~~eqI~~l~~~-----------~~~~iPl~IMTS~~T~~~T~~~~~k~~~Fg 151 (484)
T 3gue_A 85 GLGTGMGLNGPKSLLQVK--NGQTFLDFTALQLEHFRQV-----------RNCNVPFMLMNSFSTSGETKNFLRKYPTLY 151 (484)
T ss_dssp CCCGGGTCSSCGGGSEEE--TTEEHHHHHHHHHHHHHHH-----------HTCCCCEEEEECTTTHHHHHHHGGGCHHHH
T ss_pred CcccccCCCCCceeeecC--CCCcHHHHHHHHHHHHHHH-----------cCCCceEEEECCcchhHHHHHHHHhCcccC
Confidence 399999999999999997 9999999999999999986 578999999999999999999999999999
Q ss_pred CCCCcEEEEEcCceeEEecCCcc--cccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRF--IMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT 166 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~--~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~ 166 (378)
+++++|++|+|+++||++.+|+. +++++++++|+|+||||+|.+|++||+|++|+++|+||+||+|||| |++++||.
T Consensus 152 l~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDN-L~a~~Dp~ 230 (484)
T 3gue_A 152 EVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDN-LGATLDVR 230 (484)
T ss_dssp TTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTC-TTCCCCHH
T ss_pred CCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCC-cccccCHH
Confidence 99999999999999999999984 3567889999999999999999999999999999999999999999 56899999
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEe--------cCCCCeEEEEecCCChhhhhhccCCCCccccccccceeee
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR--------GKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 238 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~--------~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~ 238 (378)
||||++.+++++++||++|+.++|+||+||++ ..+|+++|+||+|+|++.++++...+|.+.| |+||+|
T Consensus 231 ~lG~~~~~~~d~~~kvv~Kt~~dekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~f~~~~g~~~F---NtnNi~ 307 (484)
T 3gue_A 231 LLDYMHEKQLGFLMEVCRRTESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSFQNIAKHCFF---NTNNIW 307 (484)
T ss_dssp HHHHHHHTTCSEEEEEEECCTTCCSSEEEEEEC--------CCCEEEEEEGGGSCGGGHHHHTCTTTSCEE---EEEEEE
T ss_pred HHHHHHhcCCCEEEEEEECCCCCCceeEEEEEccccccccCCCCCEEEEEeccCCHHHHhhhcCCCCceEe---EeeeEE
Confidence 99999999999999999999999999999997 3379999999999999998875545666655 888999
Q ss_pred EeHHHHHHHhhcc--ccCccceeeecccCCCC-CCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCH
Q 017059 239 FTLDFLNQVANGL--EKDSVYHLAEKKIPSIH-GQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTP 315 (378)
Q Consensus 239 ~~l~fl~~~~~~~--~~~lp~h~a~Kkip~~~-~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp 315 (378)
+++++|+++++.. ...||+|++.|+++..+ ..+|++|||+||||+|++++++.+++|+| +||+||||+++ +
T Consensus 308 ~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~~~~~~ieV~R-~rF~PvKn~sd-----L 381 (484)
T 3gue_A 308 INLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFDRSEAVVVPR-ERFAPVKTCSD-----L 381 (484)
T ss_dssp EEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTSSSEEEEECCG-GGCCCCSSHHH-----H
T ss_pred EEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhCCccEEEEECh-hhccccccchH-----H
Confidence 9999999998764 34689999999995443 56899999999999999999999999999 69999999987 8
Q ss_pred HHHHHHHHHHHH
Q 017059 316 DSARLLVLRLHT 327 (378)
Q Consensus 316 ~ta~~~l~~~~~ 327 (378)
..+|+|+|.++.
T Consensus 382 l~~~Sdly~l~~ 393 (484)
T 3gue_A 382 LALRSDAYQVTE 393 (484)
T ss_dssp HHHHSTTEEECT
T ss_pred HHHhhhceeccC
Confidence 888888887643
No 5
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=1.1e-78 Score=629.49 Aligned_cols=331 Identities=20% Similarity=0.227 Sum_probs=284.2
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+||||||+++|||++|+++++++||||+++|||+ ++ +++.|||+||||+.||++|++||++ ||
T Consensus 123 GlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~---~~-----------~g~~iPl~IMTS~~T~~~T~~~~~~---fg 185 (630)
T 3ogz_A 123 GLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQ---RV-----------GGKEVPFVIMTSDDTHDRTLQLLRE---LQ 185 (630)
T ss_dssp CEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHH---HH-----------HCTTCCEEEEECTTTHHHHHHHHHH---TT
T ss_pred CcccccCCCCCcccceecCCCCCcHHHHHHHHHH---HH-----------hCCCCcEEEEecccchHHHHHHHHH---hC
Confidence 3999999999999999999999999999999998 22 3589999999999999999999999 99
Q ss_pred CCCCcEEEEEcCceeEEe-cCCcccccCCCccccccCCCchhhHHhhcCc------------------HHHHHHHCCceE
Q 017059 89 LESDQVTFFQQGTIPCVS-KDGRFIMETPYKVAKAPDGNGGVYSALKSSK------------------LLEDMATRGIKY 149 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~-~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG------------------~ld~l~~~Gi~y 149 (378)
++++||+||+|+++||++ .+|+++++++++++|+|+||||+|.+|+++| +|++|+++|++|
T Consensus 186 l~~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Giey 265 (630)
T 3ogz_A 186 LEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYES 265 (630)
T ss_dssp CCCTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCE
T ss_pred CCcccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEE
Confidence 999999999999999996 7899999999999999999999999999999 999999999999
Q ss_pred EEEEecCCCcccccCHHHhHHHHhcCCcEEEEEecccCCCccceeEEEe-cCCCCe---EEEEecCCChhhhhhccCCCC
Q 017059 150 IDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR-GKGGPL---TVVEYSELDPSLASAINQETG 225 (378)
Q Consensus 150 i~v~~vDN~l~~~~DP~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~-~~~g~~---~vvEYsel~~~~~~~~~~~~g 225 (378)
+||+||||+|++++||.||||++.++++|++||++|+ |.|++|++|+. +.||++ ++|||+|+++++++..++ +|
T Consensus 266 i~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~-p~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~-~g 343 (630)
T 3ogz_A 266 IVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRV-PKEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKD-GG 343 (630)
T ss_dssp EEEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCC-SSCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC------
T ss_pred EEEEccCCccccccCHHHhHHHHhcCCCEEEEEEECC-CCcceeeEEEEecCCCceeeeeEEEeccCCHhHhhccCC-Cc
Confidence 9999999999999999999999999999999999985 89999999985 347999 569999999998874322 33
Q ss_pred c-------cccccccceeeeEeHHHHHHHhhccccCccceeeeccc-CCCCCCcceeeehhhhhhccccCC----ceEEE
Q 017059 226 R-------LRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKI-PSIHGQTVGFKLEQFIFDAFPYAP----STALF 293 (378)
Q Consensus 226 ~-------l~f~~gNi~~~~~~l~fl~~~~~~~~~~lp~h~a~Kki-p~~~~~~~~~klE~fifD~~~~~~----~~~~~ 293 (378)
. +.|++||||||||+|+++.+.+......+|.+++.|.+ +.-+.+++++|||+||||++++++ ++.++
T Consensus 344 ~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~~~~~ip~~vNpK~~d~~~~~~~~~~qLEt~m~d~~~~F~~~~~~v~~~ 423 (630)
T 3ogz_A 344 DEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPKYSDETRRSFKKPARIESLMQDIALLFSEDDYRVGGT 423 (630)
T ss_dssp -------CCCSSCEEEEEEEEEHHHHHHHHHHHTTCCCCEECCCBSSSSSCCBSSCBCEECCGGGGGGGCCTTTCCEEEE
T ss_pred cccccccccccccccceeeeEEHHHHHHHHHhccCccceecCCcccCCcccccCcchhhhhHHHHHHHhccccCcceeEE
Confidence 3 88889999999999997776665544578877766643 122245689999999999766654 55889
Q ss_pred EEecCcceeccccCC---------CCCCCCHHHHHHHHHHHHHHHHHHcCCeecc-CCCCc--cC---cEEecccceeeC
Q 017059 294 EVLREEEFAPVKNAN---------GSNFDTPDSARLLVLRLHTRWVIAAGGFLTH-SVPLY--AT---GVEVSPLCSYAG 358 (378)
Q Consensus 294 ~V~R~~eFsPvKn~~---------g~~~dsp~ta~~~l~~~~~~~l~~~g~~~~~-~~~~~--~~---~~eisP~~sy~g 358 (378)
+|+| .||+||||+. |.+.|||+||+.|+|+++++||++||++++. +.+.. .+ .++.-|+|.+..
T Consensus 424 ~V~R-~~F~PVKn~~~~a~~k~~~g~~~~sp~t~~~dly~~~~~~L~~aG~~v~~~~~~~~~~~~~~~~~~~~P~i~l~p 502 (630)
T 3ogz_A 424 VFER-FSYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDT 502 (630)
T ss_dssp ECCG-GGCCBCCBCHHHHHHHHHTTCCCCBHHHHHHHHHHHHHHHHHHTTCCCCCCCSCSEEETTTTEEECCCSEEEECH
T ss_pred EECC-CeeecccCChhHhhhhhccCCCcCChHHHHHHHHHHHHHHHHHcCceecccccchhhhhcCccccCCCCEEEEec
Confidence 9999 7999999997 9999999999999999999999999999873 11111 12 244557777765
Q ss_pred C
Q 017059 359 E 359 (378)
Q Consensus 359 e 359 (378)
.
T Consensus 503 ~ 503 (630)
T 3ogz_A 503 V 503 (630)
T ss_dssp H
T ss_pred c
Confidence 3
No 6
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=6.5e-78 Score=614.95 Aligned_cols=286 Identities=20% Similarity=0.240 Sum_probs=262.2
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
||||||+++|||++|+ ++++||||+++|||+++++. +++.||||||||+.||++|++||++|+|||
T Consensus 137 lGTRLG~~~PK~~i~V--~sgktflql~~eqI~~l~~~-----------~g~~IPl~IMTS~~T~~~T~~~f~k~~~fg- 202 (528)
T 3r3i_A 137 LGTSMGCKGPKSLIGV--RNENTFLDLTVQQIEHLNKT-----------YNTDVPLVLMNSFNTDEDTKKILQKYNHCR- 202 (528)
T ss_dssp BCTTTTCSSBGGGSEE--ETTEEHHHHHHHHHHHHHHH-----------HTCCCCEEEEECTTTHHHHHSSCGGGTTSS-
T ss_pred CccccCCCCCccceec--CCCCcHHHHHHHHHHHHHHH-----------hCCCCCEEEEeccchhHHHHHHHHhcCccC-
Confidence 9999999999999987 69999999999999999876 568999999999999999999999999999
Q ss_pred CCCcEEEEEcCceeEEecCCcccccC------CCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCccccc
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMET------PYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVA 163 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~------~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~ 163 (378)
.+|++|+|+++||++.||++++++ +++++|+|+||||+|.+|+++|+||+|+++|+||+||+||||+||+ +
T Consensus 203 --~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~-v 279 (528)
T 3r3i_A 203 --VKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGAT-V 279 (528)
T ss_dssp --CCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCC-C
T ss_pred --CCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccc-c
Confidence 599999999999999999999976 7899999999999999999999999999999999999999999976 5
Q ss_pred CHHHhHHHHhc----CCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeE
Q 017059 164 DPTFLGYFIDK----GVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 239 (378)
Q Consensus 164 DP~~lG~~~~~----~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~ 239 (378)
||.||||++.+ ++++++||++|+.|+||+|++|++ +|+++||||+|+|++.+++ .+|.++|+++|||||||
T Consensus 280 Dp~~Lg~~~~~~~~~~~d~~~kVv~Kt~~dek~Gvl~~~--dGk~~vvEyseip~e~~~~---~~g~~~f~~~Ntnnlw~ 354 (528)
T 3r3i_A 280 DLYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQY--EGKLRLVEIAQVPKAHVDE---FKSVSKFKIFNTNNLWI 354 (528)
T ss_dssp CHHHHHHHSSCSSSCCCSEEEEECCCCTTCCSSCEEECS--SSSCEEECTTSSCGGGTTT---SSCSSSCCCCEEEEEEE
T ss_pred CHHHHHHHHhcccccCCcEEEEEeEccccCCcccEEEEE--CCeEEEEEecCCChhHhhc---cCCcccCCeEEEEEEEE
Confidence 99999999998 999999999999999999999997 7999999999999998875 36788999999999999
Q ss_pred eHHHHHHHhhccccCccceeeecccCCCCCCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCHHHHH
Q 017059 240 TLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSAR 319 (378)
Q Consensus 240 ~l~fl~~~~~~~~~~lp~h~a~Kkip~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~ 319 (378)
+|+||+++++.....+|+|++.|++| ..++++|||+||||+|++++++.+++|+|+ ||+||||+++ ....|
T Consensus 355 ~L~~L~~v~~~~~l~Lp~ivn~K~vd---~~~~viqlEt~igd~i~~f~~~~~i~VpR~-rF~PvKn~sd-----Lll~~ 425 (528)
T 3r3i_A 355 SLAAVKRLQEQNAIDMEIIVNAKTLD---GGLNVIQLETAVGAAIKSFENSLGINVPRS-RFLPVKTTSD-----LLLVM 425 (528)
T ss_dssp EHHHHHHHHHTTCCCCCCEEEEECCS---SSSCEEEEEBCSTTCSTTSSSCCCEECCGG-GCCBCCSHHH-----HHHHH
T ss_pred EHHHHHHHHHhCCCCCCceecCcccC---CCCCEEEeHHHHHHHHHhccCcEEEEEehH-HcccccchHH-----HHHHh
Confidence 99999999987666799999999875 568999999999999999999999999999 5999999987 78888
Q ss_pred HHHHHHH
Q 017059 320 LLVLRLH 326 (378)
Q Consensus 320 ~~l~~~~ 326 (378)
+|+|.+.
T Consensus 426 Sdly~l~ 432 (528)
T 3r3i_A 426 SNLYSLN 432 (528)
T ss_dssp STTSEEE
T ss_pred cceeEee
Confidence 8888764
No 7
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=1e-72 Score=579.39 Aligned_cols=315 Identities=20% Similarity=0.234 Sum_probs=286.3
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHH-hcCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE-GHKYFG 88 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~-~~~~Fg 88 (378)
||||||++.||+|+||+ ++|||||++++||++++.+ +++.|||+||||+.||+.|++||+ +|++||
T Consensus 85 lGTRLg~~~PK~llpV~--~gk~fLe~~ie~l~~~~~~-----------~g~~ip~viMtS~~t~e~t~~~f~~~~~~fG 151 (505)
T 2oeg_A 85 LGTGMGLCDAKTLLEVK--DGKTFLDFTALQVQYLRQH-----------CSEHLRFMLMDSFNTSASTKSFLKARYPWLY 151 (505)
T ss_dssp CCGGGTCCSCGGGSEEE--TTEEHHHHHHHHHHHHHHH-----------TCTTCEEEEEECHHHHHHHHHHHHHHCHHHH
T ss_pred cccccCCCCCCcccccC--CCCcHHHHHHHHHHHHHHh-----------cCCCcCEEEEeCCCCHHHHHHHHhhhhhccC
Confidence 99999999999999998 8999999999999999887 568899999999999999999999 999999
Q ss_pred CCCCcEEEEEcCceeEEecCC-ccc-ccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH
Q 017059 89 LESDQVTFFQQGTIPCVSKDG-RFI-METPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT 166 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g-~~~-l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~ 166 (378)
+++++|.+|+|+++||++.+| +++ ++++..++|+|+||||+|.+|+++|++++|.++|++|++|+|+||+ ++.+||.
T Consensus 152 l~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL-~~~~D~~ 230 (505)
T 2oeg_A 152 QVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNL-GATIDKR 230 (505)
T ss_dssp TTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCT-TCCCCHH
T ss_pred CCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCcc-ccccCHH
Confidence 999999999999999999888 555 6777779999999999999999999999999999999999999996 4899999
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEec-----CCCC-------eEEEEecCCChhhhhhccCCCCccccccccc
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG-----KGGP-------LTVVEYSELDPSLASAINQETGRLRFCWSNV 234 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~-----~~g~-------~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi 234 (378)
++||+..++++++++|++|+.+++++|+++.+. .+|+ ++|+||+|+|++.++++ +|.++|+++||
T Consensus 231 llg~~~~~~ad~~~~v~~k~~~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~---~g~~~f~~~Ni 307 (505)
T 2oeg_A 231 VLAYMEKEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESF---QDINKYSFFNT 307 (505)
T ss_dssp HHHHHHHHTCSEEEEEEECCTTCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHH---HCTTTTCEEEE
T ss_pred HHHHHHhcCCcEEEEEEEecCCccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcc---cCccccCeeEE
Confidence 999999999999999999999999999999843 4799 99999999999988764 57788989999
Q ss_pred eeeeEeHHHHHHHhhc--cccCccceeeecccCCCC-CCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCC
Q 017059 235 CLHMFTLDFLNQVANG--LEKDSVYHLAEKKIPSIH-GQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSN 311 (378)
Q Consensus 235 ~~~~~~l~fl~~~~~~--~~~~lp~h~a~Kkip~~~-~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~ 311 (378)
|||||+++||+++++. ....||+|++.|++|+.+ ..++++|||+||||+|++++++.+++|+|+ |||||||+
T Consensus 308 nn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~-~FsPvKn~---- 382 (505)
T 2oeg_A 308 NNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIVVPRS-RFAPVKTC---- 382 (505)
T ss_dssp EEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSCTTCEEEECCGG-GCCCCSSH----
T ss_pred EEEEEEHHHHHHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhcCcceEEEeccc-eeecccCC----
Confidence 9999999999999876 234689999999998876 568999999999999999999999999998 99999997
Q ss_pred CCCHHHHHHHHHHHHH--HHHHHcCCeeccCCCCccCcEEeccc
Q 017059 312 FDTPDSARLLVLRLHT--RWVIAAGGFLTHSVPLYATGVEVSPL 353 (378)
Q Consensus 312 ~dsp~ta~~~l~~~~~--~~l~~~g~~~~~~~~~~~~~~eisP~ 353 (378)
|+|.++|+|+|.+++ +|+. +|+.+. .. ..||++|.
T Consensus 383 -~dl~~~~sdly~~~~~~~~~~-~~~~~~-~~----p~i~l~p~ 419 (505)
T 2oeg_A 383 -ADLLALRSDAYVVTDDFRLVL-DDRCHG-HP----PVVDLDSA 419 (505)
T ss_dssp -HHHHHHHSTTEEECTTCCEEE-CGGGTT-CC----CEEEECHH
T ss_pred -CCHHHHHHHHHhhcCCceEEE-cccccC-cC----CeEEEChh
Confidence 569999999999988 7876 565432 11 23899988
No 8
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-67 Score=536.79 Aligned_cols=325 Identities=19% Similarity=0.220 Sum_probs=280.5
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
+||||||++.||+|+|| ++||||||++++++++++.. +++.|||+||||+.||+.|++||+++++||
T Consensus 101 G~GTRmgs~~PK~l~~V--~~gk~~Le~~i~~i~~l~~~-----------~G~~Ip~vImts~~t~e~t~~~~~~~~~fg 167 (488)
T 2i5k_A 101 GLGTSMGCVGPKSVIEV--REGNTFLDLSVRQIEYLNRQ-----------YDSDVPLLLMNSFNTDKDTEHLIKKYSANR 167 (488)
T ss_dssp CBSGGGTCCSBSTTSCC--BTTBCHHHHHHHHHHHHHHH-----------HTCCCEEEEECCTTTHHHHHHHHGGGCSSS
T ss_pred CCcccCCCCCCcccccc--CCCCcHHHHHHHHHHHhHHh-----------cCCCccEEEEECCCCHHHHHHHHHhccccC
Confidence 39999999999999987 77999999999999988765 467899999999999999999999999999
Q ss_pred CCCCcEEEEEcCceeEEecCCcccccCCC---ccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIMETPY---KVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP 165 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~---~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP 165 (378)
+ +|.+|.|+++||++.||+++++.+. +++|+|+||||+|.+|+.+|++++|.++|++|++|+|+|| |++..||
T Consensus 168 ~---~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~ 243 (488)
T 2i5k_A 168 I---RIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDL 243 (488)
T ss_dssp C---EEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCH
T ss_pred c---eEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccH
Confidence 7 7999999999999999999997654 6999999999999999999999999999999999999999 6689999
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
.+|||+..++++++++|++|+.|++++|+|++. +|+.++|||+|++++.+.+++ +.+.|...|||++||++++|+
T Consensus 244 ~~L~~~~~~~a~~t~~v~~~~~p~~~yG~Iv~~--dG~~~iVE~~e~~~e~~~~~~---~~~~~~~~Ntgi~~f~~~~L~ 318 (488)
T 2i5k_A 244 KILNHMIETGAEYIMELTDKTRADVKGGTLISY--DGQVRLLEVAQVPKEHIDEFK---NIRKFTNFNTNNLWINLKAVK 318 (488)
T ss_dssp HHHHHHHHSCCSEEEEEEECCGGGSSSCEEEEE--TTEEEEECGGGSCTTSHHHHT---CTTTCCEEEEEEEEEEHHHHH
T ss_pred HHHHHHHhcCCcEEEEEEEecCCCCceeEEEEE--CCcEEEEEeccCCHHHHhhcc---cccccCEEEEEEEEEeHHHHH
Confidence 999999999999999999999999999999986 789999999999999877653 335566679999999999999
Q ss_pred HHhhccccCccceeeecccCCCCCCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCHHHHHHHHHHH
Q 017059 246 QVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRL 325 (378)
Q Consensus 246 ~~~~~~~~~lp~h~a~Kkip~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~~~ 325 (378)
++++.....+|+|++.|++||-++..+++|||+||||+|++++++.+++|+|+ |||||||+++ +. +.+
T Consensus 319 ~~l~~~~~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~-~F~PvKn~~~-----ll------~~~ 386 (488)
T 2i5k_A 319 RLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRS-RFLPVKTCSD-----LL------LVK 386 (488)
T ss_dssp HHHHTTCCCCCCBCCEECCCC-----CEECCBCCGGGGGGGSSSCEEEEECGG-GCCBCCSHHH-----HH------HHT
T ss_pred HHHhhccCCCcceecCccccCCCCCCceEEeeehhhhHHhhccCceEEEeccc-ccccccCCcc-----HH------HHH
Confidence 99987666899999999999844567999999999999999999999999998 8999999752 44 444
Q ss_pred HHHHHHHcCCeeccCCCCccCcEEecccceeeCCCchhhhcCcE----ecC-Cccc
Q 017059 326 HTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRT----FHA-PCEI 376 (378)
Q Consensus 326 ~~~~l~~~g~~~~~~~~~~~~~~eisP~~sy~ge~l~~~~~~~~----~~~-p~~~ 376 (378)
+.+|...+|..+.+. ..+|++|+|+|+|+ +.++++ |++ |.++
T Consensus 387 ~~~~~~~~g~~~~~~-----~~~e~~P~v~~~~~----~~~~~~~~~rf~~~p~i~ 433 (488)
T 2i5k_A 387 SDLFRLEHGSLKLDP-----SRFGPNPLIKLGSH----FKKVSGFNARIPHIPKIV 433 (488)
T ss_dssp STTEEEETTEEEECT-----TCCSSCCEEEECGG----GSSHHHHHHHCSSCCBCT
T ss_pred HHHHHHhcCcEeecC-----CcCCCCCeEEECCc----ccchhhHHhhcCCCcccc
Confidence 455555567655322 22899999999994 334444 766 7664
No 9
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=1.7e-66 Score=530.62 Aligned_cols=312 Identities=19% Similarity=0.210 Sum_probs=272.6
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
||||||++.||+|+|+ +++|||||++++||++++.. +++.|||+||||..||+.|++||++|++||+
T Consensus 89 lGTRLg~~~PK~llpv--~~gkp~Le~~i~~l~~~~~~-----------~G~~ip~vimts~~t~e~t~~~f~~~~~fG~ 155 (469)
T 2icy_A 89 LGTTMGCTGPKSVIEV--RDGLTFLDLIVIQIENLNNK-----------YGCKVPLVLMNSFNTHDDTHKIVEKYTNSNV 155 (469)
T ss_dssp BSGGGTCCSBGGGSEE--ETTEEHHHHHHHHHHHHHHH-----------HSCCCCEEEEECTTTHHHHHHHHGGGTTSSS
T ss_pred ccccCCCCCCcccccc--CCCCCHHHHHHHHHHHHHHh-----------cCCCccEEEEeCCCCHHHHHHHHHhcccCCc
Confidence 9999999999999988 58999999999999998765 4678999999999999999999999999998
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCC---CccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETP---YKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT 166 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~---~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~ 166 (378)
+|++|+|+++||++.+|+++++++ ++++|+|+||||+|++|+++|++++|.++|++|++|+|+||+. +.+||.
T Consensus 156 ---~I~~f~Q~~~P~i~~e~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~DnL~-~~~d~~ 231 (469)
T 2icy_A 156 ---DIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLG-AIVDLT 231 (469)
T ss_dssp ---CEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTT-CCCCHH
T ss_pred ---eEEEEEecceeeEccccCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCcCC-cccCHH
Confidence 799999999999999999999766 7899999999999999999999999999999999999999965 789999
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
|+||+.+++++++++|++|+.|++++|++|.. +|+.+++||+|+|++.++++.+ ...|..+|||||||++++|++
T Consensus 232 ll~~~~~~~a~~t~~v~~k~~~~~~~Gvl~~~--dg~~~vvE~~e~p~~~~~e~k~---~~~~~~~N~g~y~~~~~~L~~ 306 (469)
T 2icy_A 232 ILKHLIQNKNEYCMEVTPKTLADVKGGTLISY--EGKVQLLEIAQVPDEHVNEFKS---IEKFKIFNTNNLWVNLKAIKK 306 (469)
T ss_dssp HHHHHHHHTCSEEEEEEECCTTCCSSCEEEEE--TTEEEEECGGGSCGGGHHHHHS---SSSCCEEEEEEEEEEHHHHHH
T ss_pred HHHHHHHcCCCeeEEEEEeccCCCceeEEEEE--CCEEEEEEEeccChhhhhhhcc---ccccceeeEEEEEEcHHHHHH
Confidence 99999999999999999999999999999986 7899999999999987654321 234556699999999999999
Q ss_pred HhhccccCccceeeecccCCCCCCcceeeehhhhhhccccCCceEEEEEecCcceeccccCCCCCCCCHHHHHHHHHHHH
Q 017059 247 VANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLH 326 (378)
Q Consensus 247 ~~~~~~~~lp~h~a~Kkip~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~~~~ 326 (378)
+.+.....+|+|++.|++. ..+++|||+||||++++++++.+++|+|+ ||+||||+++ +.++++|+|.
T Consensus 307 i~~~~~~~lp~~v~~K~id----~~~~~klE~~~~D~~~~~~~~~~~~V~R~-~F~PvKn~~d-----ll~~~s~l~~-- 374 (469)
T 2icy_A 307 LVEADALKMEIIPNPKEVD----GVKVLQLETAAGAAIRFFDNAIGVNVPRS-RFLPVKASSD-----LLLVQSDLYT-- 374 (469)
T ss_dssp HHHTTCCCCCCBCCEEEET----TEEEECCBCCGGGGGGGSTTCEEEECCGG-GCCBCCSHHH-----HHHHHSTTEE--
T ss_pred HHhcccCCchhhccceecC----CCceEeehHhhHHHHHhcCCeEEEEechh-HcCcCCCHHH-----HHHHHHHHHH--
Confidence 9876556799999999873 47899999999999999999999999998 8999999763 5555555444
Q ss_pred HHHHHHcCCeeccCCCCccCcEEecccceeeCCCchhh
Q 017059 327 TRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAI 364 (378)
Q Consensus 327 ~~~l~~~g~~~~~~~~~~~~~~eisP~~sy~ge~l~~~ 364 (378)
..+|..+.+.. ..+|++|+|+|++| ++.+
T Consensus 375 ----~~~g~~~~~~~----~~~~~~P~v~l~~~-~~~v 403 (469)
T 2icy_A 375 ----LVDGFVTRNKA----RTNPSNPSIELGPE-FKKV 403 (469)
T ss_dssp ----EETTEEEECTT----CCSSSCCEEEECGG-GCSH
T ss_pred ----HhcCcEEecCc----ccCCCCCeEEcChh-hhhH
Confidence 44454432211 13799999999988 5543
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=97.76 E-value=0.00041 Score=70.68 Aligned_cols=179 Identities=16% Similarity=0.187 Sum_probs=118.5
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHh-cCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEG-HKYFG 88 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~-~~~Fg 88 (378)
+||||...-||-|+|+ .||++++..++.+..+ +.. -++|.|+. ..+.++++|.+ .+.+|
T Consensus 22 ~GtRm~~~~pK~l~pv---~gkp~i~~~l~~~~~~---------------g~~-~i~vv~~~-~~~~i~~~~~~~~~~~~ 81 (501)
T 3st8_A 22 PGTRMRSDTPKVLHTL---AGRSMLSHVLHAIAKL---------------APQ-RLIVVLGH-DHQRIAPLVGELADTLG 81 (501)
T ss_dssp CCGGGCCSSCGGGCEE---TTEEHHHHHHHHHHHH---------------CCS-EEEEEECT-THHHHHHHHHHHHHHHT
T ss_pred CcccCCCCCCHHHeEE---CChhHHHHHHHHHHhC---------------CCC-EEEEEeCC-CHHHHHHHHHHHHHhcC
Confidence 8999999999999998 6899999998877543 111 36777764 46778999976 23455
Q ss_pred CCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH--H
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP--T 166 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP--~ 166 (378)
. +|.+..|. .|-|-|+-.... ++.+...-...+.+.+.|.++.. .+. .
T Consensus 82 ~---~i~~~~q~---------------------~~lGTa~Av~~a-----~~~l~~~~~~~~lvl~gd~~l~~-~~~~~~ 131 (501)
T 3st8_A 82 R---TIDVALQD---------------------RPLGTGHAVLCG-----LSALPDDYAGNVVVTSGDTPLLD-ADTLAD 131 (501)
T ss_dssp S---CCEEEECS---------------------SCCCHHHHHHHH-----HTTSCTTCCSEEEEEETTCTTCC-HHHHHH
T ss_pred C---cEEEEEcC---------------------CCCCcHHHHHHH-----HHHhccccccceeeecCcceeec-HHHHHH
Confidence 3 57777775 244666533221 22232333567888888888842 232 2
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCe-EEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~-~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
++-++...+.++.+-+.+..+|. .-|++.+. ++|+. .++|-.+-+++...- ...|+.+++|+-+.|+
T Consensus 132 l~~~h~~~~~~~ti~~~~~~dp~-~yG~i~~~-~~g~v~~ivEk~~~~~~~~~i----------~~in~Giy~f~~~~l~ 199 (501)
T 3st8_A 132 LIATHRAVSAAVTVLTTTLDDPF-GYGRILRT-QDHEVMAIVEQTDATPSQREI----------REVNAGVYAFDIAALR 199 (501)
T ss_dssp HHHHHHHTTCSEEEEEEECSCCT-TSCEEEEC-TTCCEEEEECGGGCCHHHHHC----------CEEEEEEEEEEHHHHH
T ss_pred HHHHHhhccccceEeeeccCCch-hccccccc-cceeEEeeccccCCChhhccc----------eeeeceeeeecchhHH
Confidence 56777788888876555544443 56777765 35554 578887777764421 1358889999999998
Q ss_pred HHhhc
Q 017059 246 QVANG 250 (378)
Q Consensus 246 ~~~~~ 250 (378)
++...
T Consensus 200 ~~l~~ 204 (501)
T 3st8_A 200 SALSR 204 (501)
T ss_dssp HHHTT
T ss_pred Hhhhh
Confidence 87753
No 11
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=97.00 E-value=0.021 Score=52.99 Aligned_cols=169 Identities=12% Similarity=0.114 Sum_probs=104.2
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||+- ..||.++|+ .|+++++..++++... ++ -.++|.|.....+.+.++++....
T Consensus 34 ~g~Rl~~lt~~~pK~ll~i---~g~pli~~~l~~l~~~---------------g~-~~iivv~~~~~~~~~~~~~~~~~~ 94 (269)
T 4ecm_A 34 TGSRLYPITKVTNKHLLPV---GRYPMIYHAVYKLKQC---------------DI-TDIMIITGKEHMGDVVSFLGSGQE 94 (269)
T ss_dssp CCGGGTTTTSSSCGGGSEE---TTEEHHHHHHHHHHHT---------------TC-CEEEEEECTTTHHHHHHHHTTSGG
T ss_pred CccccccccCCCCceecEE---CCEEHHHHHHHHHHHC---------------CC-CEEEEECChhhHHHHHHHHhhccc
Confidence 8999987 889999998 5999999999987531 22 147777776656778888876444
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT 166 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~ 166 (378)
+|+ ++.+..|. .+.|.|+. +.. .++.+. -+++.|.+.|.+.. ..--.
T Consensus 95 ~~~---~i~~~~~~---------------------~~~G~~~a---l~~--a~~~~~---~~~~lv~~~D~~~~-~~l~~ 141 (269)
T 4ecm_A 95 FGV---SFTYRVQD---------------------KAGGIAQA---LGL--CEDFVG---NDRMVVILGDNIFS-DDIRP 141 (269)
T ss_dssp GTC---EEEEEECS---------------------SCCCHHHH---HHT--THHHHT---TSEEEEEETTEEES-SCSHH
T ss_pred cCc---eEEEeeCC---------------------ccCcHHHH---HHH--HHHhcC---CCcEEEEeCCccCc-cCHHH
Confidence 554 23322221 13344332 221 133332 47899999999874 22234
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
++-.+...+.++.+-+.+... ...-|++... +| .|+++.|=|.. + .....|++..+|+-+.++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~~~-~~~~g~v~~d--~g--~v~~~~ekp~~------~-----~~~~~~~Giy~~~~~~l~~ 205 (269)
T 4ecm_A 142 YVEEFTNQKEGAKVLLQSVDD-PERFGVANIQ--NR--KIIEIEEKPKE------P-----KSSYAVTGIYLYDSKVFSY 205 (269)
T ss_dssp HHHHHHTSSSSEEEEEEECSC-GGGSEEEEEE--TT--EEEEEEESCSS------C-----SCSEEEEEEEEECTTHHHH
T ss_pred HHHHHHhcCCCeEEEEEECCC-CCCceEEEEc--CC--EEEEEEECCCC------C-----CCcEEEEEEEEECHHHHHh
Confidence 677777778887665554433 3456777664 45 45555443311 0 1123588889999887743
No 12
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=96.95 E-value=0.0071 Score=55.86 Aligned_cols=177 Identities=17% Similarity=0.169 Sum_probs=103.5
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||+ ||-++|+ .||++++..++++... ++. .++|-|. ++.+.+++++ ||.
T Consensus 12 ~stRlp---~K~L~~i---~GkPli~~~l~~l~~~---------------~~~-~ivVv~~---~~~i~~~~~~---~g~ 63 (252)
T 3oam_A 12 QSTRLP---GKPLADI---GGKPMIQWVYEQAMQA---------------GAD-RVIIATD---DERVEQAVQA---FGG 63 (252)
T ss_dssp CCSSST---TGGGCEE---TTEEHHHHHHHHHHHT---------------TCS-EEEEEES---CHHHHHHHHH---TTC
T ss_pred CCCCCC---CcceeeE---CCEEHHHHHHHHHHhC---------------CCC-eEEEECC---HHHHHHHHHH---cCC
Confidence 899995 8999988 7999999999887532 221 3566663 5889999986 442
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-HHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP-TFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP-~~l 168 (378)
++.+..| ..|.|.|+++.++. .+...+-+++.+.+.|+++....+- .++
T Consensus 64 ---~v~~~~~---------------------~~~~Gt~~~~~~~~------~l~~~~~d~vlv~~gD~Pli~~~~i~~l~ 113 (252)
T 3oam_A 64 ---VVCMTSP---------------------NHQSGTERLAEVVA------KMAIPADHIVVNVQGDEPLIPPAIIRQVA 113 (252)
T ss_dssp ---EEEECCT---------------------TCCSHHHHHHHHHH------HTTCCTTSEEEECCTTCTTCCHHHHHHHH
T ss_pred ---EEEEcCC---------------------CCCCcHHHHHHHHH------hcCcCCCCEEEEEeCCeeecCHHHHHHHH
Confidence 2211111 13566677666553 2211256899999999998422211 244
Q ss_pred HHHHhcCCcEEEEEecccCCCc----cceeEEEecCCCCeEEEEecC--CChhhhhhccCCC--CccccccccceeeeEe
Q 017059 169 GYFIDKGVSAGAKVVRKAYPQE----KVGVFVRRGKGGPLTVVEYSE--LDPSLASAINQET--GRLRFCWSNVCLHMFT 240 (378)
Q Consensus 169 G~~~~~~~~~~~kvv~K~~~~E----kvGvl~~~~~~g~~~vvEYse--l~~~~~~~~~~~~--g~l~f~~gNi~~~~~~ 240 (378)
-.+...+.++++-+++-.+|.+ .+|.++.. .+|+ ++.+++ +|.. ........ ....+ ..|+++..|+
T Consensus 114 ~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d-~~g~--v~~fsr~~i~~~-~~~~~~~~~~~~~~~-~~n~GiY~~~ 188 (252)
T 3oam_A 114 DNLAACSAPMATLAVEIEDEAEVFNPNAVKVITD-KSGY--ALYFSRATIPWD-RDNFAKADKAIVQPL-LRHIGIYAYR 188 (252)
T ss_dssp HHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEEC-TTSB--EEEEESSCSSCC-HHHHHSSSCCCCSCE-EEEEEEEEEE
T ss_pred HHHHhcCCCEEEEeeecCCHHHhhCCCceEEEEC-CCCe--EEEEeCCCCCCC-CCccccccccccccc-eEEEEEEEcC
Confidence 5555567777654443322222 23666554 3564 555665 3321 11100000 01122 3699999999
Q ss_pred HHHHHHHhh
Q 017059 241 LDFLNQVAN 249 (378)
Q Consensus 241 l~fl~~~~~ 249 (378)
-++|++...
T Consensus 189 ~~~l~~~~~ 197 (252)
T 3oam_A 189 AGFINTYLD 197 (252)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999988764
No 13
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=96.54 E-value=0.027 Score=53.23 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=98.5
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||| ...||.++|+ .||++++..++.+... ++. .++|.|++...+...+++.+...
T Consensus 12 ~gtRl~plT~~~pK~llpi---~gkpli~~~l~~l~~~---------------gi~-~I~vv~~~~~~~~i~~~l~~g~~ 72 (293)
T 1fxo_A 12 SGTRLHPATLAISKQLLPV---YDKPMIYYPLSTLMLA---------------GIR-EILIISTPQDTPRFQQLLGDGSN 72 (293)
T ss_dssp CCTTTTTHHHHSCGGGSEE---TTEETTHHHHHHHHHT---------------TCC-EEEEEECTTTHHHHHHHHTTSGG
T ss_pred CCCcCccccCCCCceeCeE---CCEeHHHHHHHHHHHC---------------CCC-EEEEEeccccHHHHHHHHhcccc
Confidence 899998 4579999998 5899999998877421 221 35667777667778888876433
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP- 165 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP- 165 (378)
+|+ ++.+..|+ .|.|.++.+... ++.+ +-+.+.+...||++.. .|-
T Consensus 73 ~g~---~i~~~~~~---------------------~~~G~~~al~~a-----~~~i---~~~~~~lv~gD~~~~~-~~l~ 119 (293)
T 1fxo_A 73 WGL---DLQYAVQP---------------------SPDGLAQAFLIG-----ESFI---GNDLSALVLGDNLYYG-HDFH 119 (293)
T ss_dssp GTC---EEEEEECS---------------------SCCCGGGHHHHT-----HHHH---TTSEEEEEETTEEEEC-TTHH
T ss_pred cCc---eEEEeeCC---------------------CCCCHHHHHHHH-----HHHh---CCCCEEEEECChhccC-ccHH
Confidence 453 23332221 255666544322 2223 1245566669999853 232
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
.++-.+...+.+..+-+.+-.+ .++.|++... .+|+ ++++.|=|.. + +.. ..|+...+|+-+.++
T Consensus 120 ~~l~~~~~~~~~~~v~~~~v~d-p~~~g~v~~d-~~g~--v~~~~ekp~~------~---~s~--~~~~Giy~~~~~~l~ 184 (293)
T 1fxo_A 120 ELLGSASQRQTGASVFAYHVLD-PERYGVVEFD-QGGK--AISLEEKPLE------P---KSN--YAVTGLYFYDQQVVD 184 (293)
T ss_dssp HHHHHHHTCCSSEEEEEEECSC-GGGSEEEEEC-TTSC--EEEEEESCSS------C---SSS--EEEEEEEEECTTHHH
T ss_pred HHHHHHHhcCCCcEEEEEECCC-cccCcEEEEC-CCCc--EEEEEECCCC------C---CCC--eEEEEEEEEcHHHHH
Confidence 2455554455555443333333 3467887653 3454 3344332210 1 111 357888999988876
Q ss_pred HH
Q 017059 246 QV 247 (378)
Q Consensus 246 ~~ 247 (378)
.+
T Consensus 185 ~~ 186 (293)
T 1fxo_A 185 IA 186 (293)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 14
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=96.48 E-value=0.038 Score=52.42 Aligned_cols=172 Identities=17% Similarity=0.173 Sum_probs=98.5
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||+ ...||.++|+ .||++++..++.+... ++. .++|.|++...+...+++.+...
T Consensus 13 ~GtRl~plT~~~pK~llpi---~gkpli~~~l~~l~~~---------------gi~-~I~vv~~~~~~~~i~~~l~~g~~ 73 (296)
T 1mc3_A 13 SGTRLHPITRGVSKQLLPI---YDKPMIYYPLSVLMLA---------------GIR-EILIITTPEDKGYFQRLLGDGSE 73 (296)
T ss_dssp CCGGGHHHHTTSCGGGSEE---TTEETTHHHHHHHHHT---------------TCC-EEEEEECTTTHHHHHHHHTTSGG
T ss_pred CCCcCCcccCCCCceeeEE---CCeeHHHHHHHHHHhC---------------CCC-cEEEEechhHHHHHHHHHhcccc
Confidence 899998 6789999998 5899999988877421 221 36677776667778888876433
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT 166 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~ 166 (378)
+|+ ++.+..|+ .|.|.++.+..- ++.+. + +.+.+...||++....-..
T Consensus 74 ~g~---~i~~~~~~---------------------~~~G~~~al~~a-----~~~i~--~-~~~~lv~gD~~~~~~~l~~ 121 (296)
T 1mc3_A 74 FGI---QLEYAEQP---------------------SPDGLAQAFIIG-----ETFLN--G-EPSCLVLGDNIFFGQGFSP 121 (296)
T ss_dssp GTC---EEEEEECS---------------------SCCCSTHHHHHT-----HHHHT--T-SCEEEEETTEEEECSSCHH
T ss_pred cCc---eEEEeccC---------------------CCCCHHHHHHHH-----HHHhC--C-CCEEEEECCccccccCHHH
Confidence 453 23332221 245655433321 22221 2 3344445999985322233
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
++-.+...+.+..+-+.+-.+| ++-|++... .+| .|+.+.|=|.. + +.. ..|+...+|+-+.++.
T Consensus 122 ~l~~~~~~~~~~~v~~~~v~dp-~~yg~v~~d-~~g--~v~~~~ekp~~------~---~s~--~~~~Giy~~~~~~l~~ 186 (296)
T 1mc3_A 122 KLRHVAARTEGATVFGYQVMDP-ERFGVVEFD-DNF--RAISLEEKPKQ------P---KSN--WAVTGLYFYDSKVVEY 186 (296)
T ss_dssp HHHHHTTCCSSEEEEEEECSCC-SSSBBCEEE-TTE--EEEECCBSCSS------C---SCS--EEEEEEEECCTHHHHH
T ss_pred HHHHHHHcCCCCEEEEEECCCc-ccCCEEEEC-CCC--cEEEEEECCCC------C---CCC--EEEEEEEEEcHHHHHH
Confidence 5555544445554433333333 467887654 244 45555553321 1 112 3578889999888754
Q ss_pred H
Q 017059 247 V 247 (378)
Q Consensus 247 ~ 247 (378)
+
T Consensus 187 ~ 187 (296)
T 1mc3_A 187 A 187 (296)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=96.39 E-value=0.082 Score=50.05 Aligned_cols=171 Identities=16% Similarity=0.121 Sum_probs=95.8
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||+ ...||.++|+ .||++++..++.+... ++. .++|.|++...+...+++.+...
T Consensus 13 ~GtRl~plT~~~pK~llpi---~gkpli~~~l~~l~~~---------------gi~-~Iivv~~~~~~~~i~~~l~~g~~ 73 (295)
T 1lvw_A 13 SGTRLYPITRAVSKQLLPI---YDKPMIYYPLSVLMLA---------------GIR-DILIISTPRDLPLYRDLLGDGSQ 73 (295)
T ss_dssp CCSTTTTTTTSSCGGGSEE---TTEETTHHHHHHHHHT---------------TCC-EEEEEECTTTHHHHHHHHTTSGG
T ss_pred CCCccccccCCCCceecEE---CCeeHHHHHHHHHHHC---------------CCC-eEEEEeccchHHHHHHHhhhccc
Confidence 899998 5679999998 5899999988877421 221 46677776666778888876433
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP- 165 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP- 165 (378)
+|+ ++.+..|+ .|.|.++.+... ++.+. +-.++ +...||++.. .|-
T Consensus 74 ~g~---~i~~~~~~---------------------~~~G~~~al~~a-----~~~i~--~~~~~-lv~gD~~~~~-~~l~ 120 (295)
T 1lvw_A 74 FGV---RFSYRVQE---------------------EPRGIADAFIVG-----KDFIG--DSKVA-LVLGDNVFYG-HRFS 120 (295)
T ss_dssp GTS---EEEEEECS---------------------SCCCGGGHHHHT-----HHHHT--TSCEE-EEETTCCEEC-TTHH
T ss_pred cCc---eEEEeeCC---------------------CCCChHHHHHHH-----HHHhC--CCcEE-EEECCccccC-cCHH
Confidence 453 23332221 245655544322 22221 22344 4449999853 232
Q ss_pred HHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 166 TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 166 ~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
.++-.+...+.+..+-+.+-.+| ++-|++... .+|+ |+.+.|=|.. + +.. ..|+...+|+-+.++
T Consensus 121 ~~l~~~~~~~~~~~v~~~~v~dp-~~~g~v~~d-~~g~--v~~~~ekp~~------~---~s~--~~~~Giy~f~~~~l~ 185 (295)
T 1lvw_A 121 EILRRAASLEDGAVIFGYYVRDP-RPFGVVEFD-SEGR--VISIEEKPSR------P---KSN--YVVPGLYFYDNQVVE 185 (295)
T ss_dssp HHHHHHHTCCSSEEEEEEECSCC-TTSEEEEEC-TTSB--EEEEEESCSS------C---SCS--EECCSEEEECTTHHH
T ss_pred HHHHHHHHcCCCcEEEEEECCCc-ccCCEEEEC-CCCc--EEEEEECCCC------C---CCC--EEEEEeEEEcHHHHH
Confidence 24555544445544433333333 467777653 3454 4334332210 0 111 357778899988876
Q ss_pred HH
Q 017059 246 QV 247 (378)
Q Consensus 246 ~~ 247 (378)
.+
T Consensus 186 ~~ 187 (295)
T 1lvw_A 186 IA 187 (295)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 16
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=95.89 E-value=0.073 Score=49.47 Aligned_cols=173 Identities=19% Similarity=0.251 Sum_probs=94.8
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||| ||-++|+ .||++++..++++++. ++. .++|-|. ++.+.+++++ ||.
T Consensus 19 ~stRl~---~K~L~~i---~GkPli~~~l~~l~~~---------------~i~-~VvVvt~---~~~i~~~~~~---~g~ 70 (256)
T 3tqd_A 19 DSTRLP---GKALVDI---AGKPMIQHVYESAIKS---------------GAE-EVVIATD---DKRIRQVAED---FGA 70 (256)
T ss_dssp C---CT---TGGGCEE---TTEEHHHHHHHHHHHT---------------TCS-EEEEEES---CHHHHHHHHH---TTC
T ss_pred CCCCCC---CCCeeeE---CCchHHHHHHHHHHhC---------------CCC-EEEEECC---HHHHHHHHHH---cCC
Confidence 899997 9999988 6999999999987532 111 3455563 5788888875 443
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh-
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL- 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l- 168 (378)
++.+ + . ...|.|.+.+..++. .+...+-+++.+.+.|+++. +|..+
T Consensus 71 ---~v~~---------~--------~----~~~~~Gt~~i~~a~~------~l~~~~~d~vlv~~gD~Pli---~~~~i~ 117 (256)
T 3tqd_A 71 ---VVCM---------T--------S----SDHQSGTERIAEAAV------ALGFEDDEIIVCLQGDEPLI---PPDAIR 117 (256)
T ss_dssp ---EEEE---------C--------C----TTCCSHHHHHHHHHH------HTTCCTTCEEEEECTTCCCC---CHHHHH
T ss_pred ---eEEE---------e--------C----CCCCCcHHHHHHHHH------HhCcCCCCEEEEEeCCcccC---CHHHHH
Confidence 2211 1 0 113456666665552 22223578999999999994 45443
Q ss_pred ---HHHHhc-CCcEEEEEecc------cCCCccceeEEEecCCCCeEEEEecCCChhh-hhhcc---CCCCccccccccc
Q 017059 169 ---GYFIDK-GVSAGAKVVRK------AYPQEKVGVFVRRGKGGPLTVVEYSELDPSL-ASAIN---QETGRLRFCWSNV 234 (378)
Q Consensus 169 ---G~~~~~-~~~~~~kvv~K------~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~-~~~~~---~~~g~l~f~~gNi 234 (378)
..+... ++++++=+++= .+|+ .++|++. ++|+ ++.+++=|-.. +.... +......+ ..|+
T Consensus 118 ~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~-~vkvv~d--~~g~--~l~fsr~pip~~r~~~~~~~~~~~~~~~-~~~~ 191 (256)
T 3tqd_A 118 KLAEDLDEHDNVKVASLCTPITEVDELFNPH-STKVVLN--RRNY--ALYFSHAPIPWGRDTFSDKENLQLNGSH-YRHV 191 (256)
T ss_dssp HHHHHHHHCC--CEEEEEEECCCHHHHTCTT-SCEEEEC--TTSB--EEEEESSCSSCCTTTTTCGGGCCCSSCC-EEEE
T ss_pred HHHHHHHhCCCCCEEEEeeEcCCHHHhhCCC-ccEEEEC--CCCE--EeEEecCCCCCCCcccccccccccCCcc-eEEE
Confidence 344332 45555433321 1222 3566543 3565 45555533211 10000 00001122 3799
Q ss_pred eeeeEeHHHHHHHhh
Q 017059 235 CLHMFTLDFLNQVAN 249 (378)
Q Consensus 235 ~~~~~~l~fl~~~~~ 249 (378)
+...|+-++|++..+
T Consensus 192 GiY~y~~~~l~~~~~ 206 (256)
T 3tqd_A 192 GIYAYRVGFLEEYLS 206 (256)
T ss_dssp EEEEEEHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHh
Confidence 999999999998764
No 17
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=95.82 E-value=0.81 Score=45.04 Aligned_cols=168 Identities=18% Similarity=0.134 Sum_probs=96.2
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+|||||-+.||.++|+ .|+++++..++++.... . -.++|.|+.. ++.+.+++++.
T Consensus 18 ~g~Rl~~~~pK~l~~i---~g~pli~~~l~~l~~~~---------------~-~~i~vv~~~~-~~~i~~~~~~~----- 72 (459)
T 4fce_A 18 KGTRMYSDLPKVLHPL---AGKPMVQHVIDAAMKLG---------------A-QHVHLVYGHG-GELLKKTLADP----- 72 (459)
T ss_dssp CCGGGCCSSCGGGSEE---TTEEHHHHHHHHHHHHT---------------C-SCEEEEESSC-HHHHHHHC--------
T ss_pred CCccCCCCCCcccCee---CCeeHHHHHHHHHHhCC---------------C-CcEEEEeCCC-HHHHHHHhccC-----
Confidence 8999998899999988 68999999999875431 1 1367777765 57777777642
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCC-chhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGN-GGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~Gh-G~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
.+.+..|+ .+.|. +.++.+|..- ..-+++.+.+.|.++. ++..+
T Consensus 73 ---~~~~v~~~---------------------~~~g~~~~i~~~~~~~--------~~~~~~lv~~~D~P~i---~~~~i 117 (459)
T 4fce_A 73 ---SLNWVLQA---------------------EQLGTGHAMQQAAPHF--------ADDEDILMLYGDVPLI---SVDTL 117 (459)
T ss_dssp -----CEEECS---------------------SCCCHHHHHHHHGGGS--------CTTSEEEEEETTCTTC---CHHHH
T ss_pred ---CcEEEeCC---------------------CCCCcHHHHHHHHHhc--------CCCCcEEEEeCCcccC---CHHHH
Confidence 12222221 11232 3355544321 1357999999999884 45544
Q ss_pred HHHHh--cCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 169 GYFID--KGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 169 G~~~~--~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
--..+ ...+..+-+++...+ .+-|++... +| .+.++.|=++.... .... ...|++..+|+-+++.+
T Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~-~~~g~v~~~--~g--~v~~~~ek~~~~~~-----~~~~--~~~~~Giy~~~~~~l~~ 185 (459)
T 4fce_A 118 QRLLAAKPEGGIGLLTVKLDNP-SGYGRIVRE--NG--DVVGIVEHKDASDA-----QREI--NEINTGILVANGRDLKR 185 (459)
T ss_dssp HHHHHHCCTTSEEEEEEECSCC-TTSCEEEEE--TT--EEEEEECGGGCCTT-----GGGC--CEEEEEEEEEEHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEecCCC-CcccEEEeC--CC--cEEEEEECCCCChH-----Hhhc--cEEEEEEEEEEHHHHHH
Confidence 43333 234555444444333 345666654 45 34444432221100 0111 23588889999999877
Q ss_pred Hhh
Q 017059 247 VAN 249 (378)
Q Consensus 247 ~~~ 249 (378)
.++
T Consensus 186 ~l~ 188 (459)
T 4fce_A 186 WLS 188 (459)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 18
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=95.60 E-value=0.21 Score=49.14 Aligned_cols=192 Identities=12% Similarity=0.186 Sum_probs=103.9
Q ss_pred ccccCC---CCCCCcceeccCCCCC-ChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~k-sllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
+||||+ .+.||.++|+ .|+ ++++..++++... +.. .++|.|.. .++.+.+++++.
T Consensus 22 ~gtRl~plT~~~pK~llpi---~gk~pli~~~l~~l~~~---------------gi~-~i~vv~~~-~~~~i~~~~~~~- 80 (420)
T 3brk_X 22 RGSRLKELTDRRAKPAVYF---GGKARIIDFALSNALNS---------------GIR-RIGVATQY-KAHSLIRHLQRG- 80 (420)
T ss_dssp CCGGGGGGGSSSCGGGSEE---TTTEETHHHHHHHHHHT---------------TCC-EEEEEECT-TCHHHHHHHHHH-
T ss_pred CCCccchhhcCCccccccc---CCCCcHHHHHHHHHHhC---------------CCC-eEEEEeCC-ChHHHHHHHhhh-
Confidence 899999 7789999998 588 9999999887531 211 36777765 457888898864
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCcccccc---CCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccc
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAP---DGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 162 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P---~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~ 162 (378)
+|++.. +.+..++.+.... ....| -|.++ +++. .++.+...+-+++.+.+.|.+. ..
T Consensus 81 -~~~~~~----~~~~~v~i~~~~~---------~~~~~~~~~Gt~~---al~~--a~~~l~~~~~~~~lv~~~D~~~-~~ 140 (420)
T 3brk_X 81 -WDFFRP----ERNESFDILPASQ---------RVSETQWYEGTAD---AVYQ--NIDIIEPYAPEYMVILAGDHIY-KM 140 (420)
T ss_dssp -SCCCCG----GGTCEEEEECCC----------------CCCCHHH---HHHT--THHHHHHHCCSEEEEEESSCEE-CB
T ss_pred -hccccc----cccCCEEEeCccc---------cccCCccccCCHH---HHHH--HHHHHHhcCCCEEEEecccEEE-ch
Confidence 454310 0011112111000 00012 34433 2221 1344444356789999999954 22
Q ss_pred cCHHHhHHHHhcCCcEEEEEecc-cCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeH
Q 017059 163 ADPTFLGYFIDKGVSAGAKVVRK-AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTL 241 (378)
Q Consensus 163 ~DP~~lG~~~~~~~~~~~kvv~K-~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l 241 (378)
.--.++-.+...++++.+-+.+. ......-|++... .+|+ |+++.|=|....... ... .....|+.+.+|+-
T Consensus 141 ~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d-~~g~--v~~~~ekp~~~~~~~--~~~--~~~~~~~Giy~~~~ 213 (420)
T 3brk_X 141 DYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVN-EKDE--IIDFIEKPADPPGIP--GNE--GFALASMGIYVFHT 213 (420)
T ss_dssp CTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEEC-TTSB--EEEEEESCSSCCCBT--TBT--TEEEEEEEEEEEEH
T ss_pred HHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEEC-CCCc--EEEeEeCCCcccccc--ccc--cceEEeeeeEEEeH
Confidence 22236777777788776544332 1123356777653 3454 444444222100000 000 11246888999999
Q ss_pred HHHHHHhh
Q 017059 242 DFLNQVAN 249 (378)
Q Consensus 242 ~fl~~~~~ 249 (378)
+.+.+.++
T Consensus 214 ~~l~~~l~ 221 (420)
T 3brk_X 214 KFLMEAVR 221 (420)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 98866654
No 19
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=95.49 E-value=0.15 Score=48.30 Aligned_cols=180 Identities=16% Similarity=0.120 Sum_probs=93.3
Q ss_pred ccccCC---C-CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 10 QGTRLG---S-SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 10 qGtRLG---~-~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
.||||+ . ..||.++|+. .|+++++..++++... .-.++|.|+....+.+.+++++.
T Consensus 14 ~gtRl~plt~~~~pK~ll~i~--gg~pli~~~l~~l~~~-----------------~~~i~vv~~~~~~~~i~~~~~~~- 73 (308)
T 2qh5_A 14 SGKRLWPLSRSLYPKQFLKLF--DHKSLFELSFKRNASL-----------------VDETLIVCNEKHYFLALEEIKNE- 73 (308)
T ss_dssp ------------CCGGGCTTB--TTBCHHHHHHHHHHTT-----------------CSEEEEEEEGGGHHHHHHHTTTT-
T ss_pred CCccCCccCCCCCCCEEEECC--CCCCHHHHHHHHHHcc-----------------CCCEEEEEChhHHHHHHHHHHHh-
Confidence 899996 2 5799999772 5899999998887432 11478888776556788888753
Q ss_pred CCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccC-
Q 017059 86 YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVAD- 164 (378)
Q Consensus 86 ~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~D- 164 (378)
+|++ ++.+..|+ .|.|.|+...... +.+ ..-.++.|.+.|.+.. ..|
T Consensus 74 -~~~~--~~~~i~~~---------------------~~~gt~~al~~a~-----~~l--~~~~~~lv~~~D~~~~-~~~~ 121 (308)
T 2qh5_A 74 -IKNK--SVGFLLES---------------------LSKNTANAIALSA-----LMS--DKEDLLIVTPSDHLIK-DLQA 121 (308)
T ss_dssp -CSSC--EEEEEEES---------------------SCCCHHHHHHHHH-----HTS--CTTSEEEEEESSCBCC-CHHH
T ss_pred -hCCC--ccEEEeCC---------------------CCCChHHHHHHHH-----HHh--CCCCeEEEEcCCcccc-CHHH
Confidence 4432 23332221 1335554433221 111 1234789999999873 122
Q ss_pred -HHHhHH---HHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhh-hhhccCCCCccccccccceeeeE
Q 017059 165 -PTFLGY---FIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSL-ASAINQETGRLRFCWSNVCLHMF 239 (378)
Q Consensus 165 -P~~lG~---~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~-~~~~~~~~g~l~f~~gNi~~~~~ 239 (378)
-.++.. +...+.++.+-+.+ +.+...-|++... .+|+ |+++.|=|... +.+.. ..| .+ ..|+++.+|
T Consensus 122 ~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~g~i~~d-~~~~--V~~~~Ekp~~~~~~~~~-~~g--~~-~~n~Giy~~ 193 (308)
T 2qh5_A 122 YENAIKKAIDLAQKGFLVTFGVSI-DKPNTEFGYIESP-NGLD--VKRFIEKPSLDKAIEFQ-KSG--GF-YFNSGMFVF 193 (308)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEC-SSCCTTSEEEECS-SSSB--CSEEEESCCHHHHHHHH-HHC--CE-EEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEEEec-CCCCCCceEEEEC-CCCE--EEEEEECCChHHHHHHh-hcC--Ce-EEEeEEEEE
Confidence 123443 34456666554443 3445567887542 2343 33444433221 11100 011 12 358889999
Q ss_pred eHHHHHHHhh
Q 017059 240 TLDFLNQVAN 249 (378)
Q Consensus 240 ~l~fl~~~~~ 249 (378)
+.+++.+.+.
T Consensus 194 ~~~~ll~~l~ 203 (308)
T 2qh5_A 194 QAGVFLDELK 203 (308)
T ss_dssp EHHHHHHHHH
T ss_pred EHHHHHHHHH
Confidence 9887644443
No 20
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=95.29 E-value=0.31 Score=45.42 Aligned_cols=173 Identities=18% Similarity=0.178 Sum_probs=100.9
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+||||+ +|-++|+ .||++++..++++... ++ -.++|-|. ++.+.+++++ ||.
T Consensus 28 ~stRlp---~K~L~~i---~GkPmi~~~l~~l~~~---------------~i-~~IvV~t~---~~~i~~~~~~---~g~ 79 (264)
T 3k8d_A 28 ASTRLP---GKPLVDI---NGKPMIVHVLERARES---------------GA-ERIIVATD---HEDVARAVEA---AGG 79 (264)
T ss_dssp CCSSST---TGGGCEE---TTEEHHHHHHHHHHHT---------------TC-SEEEEEES---CHHHHHHHHH---TTC
T ss_pred CCCCCC---CcceeeE---CCeEHHHHHHHHHHhC---------------CC-CEEEEECC---HHHHHHHHHH---cCC
Confidence 899995 5999988 7999999999887532 12 13566663 5778888875 442
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHH--
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTF-- 167 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~-- 167 (378)
++.+-.| ..|.|.|.+..++. .+...+-+++.+.+.|+++. +|..
T Consensus 80 ---~v~~~~~---------------------~~~~Gt~~i~~~~~------~l~~~~~d~vlv~~gD~Pli---~~~~i~ 126 (264)
T 3k8d_A 80 ---EVCMTRA---------------------DHQSGTERLAEVVE------KCAFSDDTVIVNVQGDEPMI---PATIIR 126 (264)
T ss_dssp ---EEEECCT---------------------TCCSHHHHHHHHHH------HHTCCTTCEEEEECTTCTTC---CHHHHH
T ss_pred ---EEEEecC---------------------CCCCCHHHHHHHHH------HhccCCCCEEEEEcCCcccC---CHHHHH
Confidence 1211111 13456666665542 33223578999999999995 4443
Q ss_pred --hHHHHhcCCcEEEEEecccCCCc-----cceeEEEecCCCCeEEEEecCCCh-hhhhhcc--C-CCCcccccccccee
Q 017059 168 --LGYFIDKGVSAGAKVVRKAYPQE-----KVGVFVRRGKGGPLTVVEYSELDP-SLASAIN--Q-ETGRLRFCWSNVCL 236 (378)
Q Consensus 168 --lG~~~~~~~~~~~kvv~K~~~~E-----kvGvl~~~~~~g~~~vvEYsel~~-~~~~~~~--~-~~g~l~f~~gNi~~ 236 (378)
+..+...++++++-+++=.++.+ .++|+.. ++|+ ++.+++=|. ..++... . ... ..| ..|+..
T Consensus 127 ~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d--~~g~--~l~fsr~~ip~~r~~~~~~~~~~~-~~~-~~~~Gi 200 (264)
T 3k8d_A 127 QVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLD--AEGY--ALYFSRATIPWDRDRFAEGLETVG-DNF-LRHLGI 200 (264)
T ss_dssp HHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEEC--TTSB--EEEEESSCCSCCHHHHHHCSSCCC-SCC-EEECSE
T ss_pred HHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEEC--CCCe--EEEEecCCCCCCCccccccccccC-Ccc-eEEEEE
Confidence 44445567777654443222221 2355432 3564 566666431 1111100 0 011 112 369999
Q ss_pred eeEeHHHHHHHhh
Q 017059 237 HMFTLDFLNQVAN 249 (378)
Q Consensus 237 ~~~~l~fl~~~~~ 249 (378)
..|+-++|++...
T Consensus 201 Y~y~~~~l~~~~~ 213 (264)
T 3k8d_A 201 YGYRAGFIRRYVN 213 (264)
T ss_dssp EEEEHHHHHHHHH
T ss_pred EEECHHHHHHHHh
Confidence 9999999988764
No 21
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=95.20 E-value=0.23 Score=49.38 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=96.3
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.|||||.+.||.++|+ .|+++++..++++.+. +. -.++|.|+.. .+.+.+++++
T Consensus 21 ~g~R~~~~~pK~l~~i---~gkpli~~~l~~l~~~---------------g~-~~iivv~~~~-~~~i~~~~~~------ 74 (468)
T 1hm9_A 21 KGTRMKSDLPKVLHKV---AGISMLEHVFRSVGAI---------------QP-EKTVTVVGHK-AELVEEVLAG------ 74 (468)
T ss_dssp CCGGGCCSSCGGGSEE---TTEEHHHHHHHHHHTT---------------CC-SEEEEEECTT-HHHHHHSSSS------
T ss_pred CCccCCCCCCcEeeEE---CCccHHHHHHHHHHhc---------------CC-CCEEEEECCC-HHHHHHHhCC------
Confidence 8999998889999988 6899999988877421 11 1466777654 4445554442
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-HH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP-TF 167 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP-~~ 167 (378)
.+.+..|+ .+.|.++ ++.+ ++.+. ..-+++.+.+.|.++....+- .+
T Consensus 75 ---~i~~v~~~---------------------~~~G~~~sl~~a------~~~~~-~~~~~vlv~~~D~P~i~~~~i~~l 123 (468)
T 1hm9_A 75 ---QTEFVTQS---------------------EQLGTGHAVMMT------EPILE-GLSGHTLVIAGDTPLITGESLKNL 123 (468)
T ss_dssp ---SSEEEECS---------------------SCCCHHHHHHTT------HHHHT-TCCSEEEEEETTCTTCCHHHHHHH
T ss_pred ---CcEEEeCC---------------------ccCChHHHHHHH------HHHhc-cCCCeEEEEeCCccccCHHHHHHH
Confidence 12221111 1223332 2222 33342 224789999999987432221 24
Q ss_pred hHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHHH
Q 017059 168 LGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQV 247 (378)
Q Consensus 168 lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~~ 247 (378)
+-.+.+.++++.+-+.+...+ ..-|++... ++|+ ++++.|=++..... ......|+...+|+-+.|.+.
T Consensus 124 ~~~~~~~~~~~~i~~~~~~~~-~~~g~v~~d-~~g~--v~~~~ek~~~~~~~-------~~~~~~~~Giy~f~~~~l~~~ 192 (468)
T 1hm9_A 124 IDFHINHKNVATILTAETDNP-FGYGRIVRN-DNAE--VLRIVEQKDATDFE-------KQIKEINTGTYVFDNERLFEA 192 (468)
T ss_dssp HHHHHHTTCSEEEEEEECSCC-TTSCEEEEC-TTCC--EEEEECTTTCCTTG-------GGCCEEEEEEEEEEHHHHHHH
T ss_pred HHHHHhcCCcEEEEEeccCCC-CceeEEEEC-CCCC--EEEEEECCCCChHH-------hcCeEEEEEEEEEEHHHHHHH
Confidence 555556677776544444333 346666543 3453 44554433210000 011235788899999988666
Q ss_pred hh
Q 017059 248 AN 249 (378)
Q Consensus 248 ~~ 249 (378)
+.
T Consensus 193 l~ 194 (468)
T 1hm9_A 193 LK 194 (468)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 22
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=95.20 E-value=0.34 Score=47.98 Aligned_cols=199 Identities=13% Similarity=0.188 Sum_probs=101.9
Q ss_pred ccccCC---CCCCCcceeccCCCCC-ChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHK 85 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~k-sllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~ 85 (378)
+||||+ .+.||.++|+ .|+ ++++..++++.+. +.. .++|.|.. .++.+.+++.+.
T Consensus 30 ~gtRl~plT~~~pK~llpi---~g~~pli~~~l~~l~~~---------------g~~-~i~vv~~~-~~~~i~~~~~~~- 88 (451)
T 1yp2_A 30 AGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLNS---------------NIS-KIYVLTQF-NSASLNRHLSRA- 88 (451)
T ss_dssp ---CCTTTTTTSCGGGCEE---TTTEETTHHHHHHHHHT---------------TCC-EEEEEESC-CCHHHHHHHHHH-
T ss_pred CCCcccchhcCCcceeeEE---CCcceeHHHHHHHHHHC---------------CCC-EEEEEecc-CHHHHHHHHhhh-
Confidence 899999 6789999998 588 9999998887532 121 46777765 456788888753
Q ss_pred CCCCCCCcE-EEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccC
Q 017059 86 YFGLESDQV-TFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVAD 164 (378)
Q Consensus 86 ~Fgl~~~~v-~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~D 164 (378)
+|. ++ .++.++.+..+..+- .+. -...+-|.|+-.... ++.+...+-+++.|.+.|.+. . .|
T Consensus 89 -~~~---~~~~~~~~~~v~i~~~~~-----~~~-~~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~~D~~~-~-~~ 151 (451)
T 1yp2_A 89 -YAS---NMGGYKNEGFVEVLAAQQ-----SPE-NPDWFQGTADAVRQY-----LWLFEEHTVLEYLILAGDHLY-R-MD 151 (451)
T ss_dssp -CC-----------CCEEEEEESCS-----STT-SCCCCCSHHHHHHHT-----HHHHTTSCCSEEEEECSCEEC-C-CC
T ss_pred -hhc---ccccccccCcEEEecccc-----ccc-ccccccCcHHHHHHH-----HHHHHhcCCCeEEEecCcEEE-c-CC
Confidence 221 11 011222222222110 000 001133444322211 334433356899999999954 2 34
Q ss_pred H-HHhHHHHhcCCcEEEEEeccc-CCCccceeEEEecCCCCeEEEEecCCChhh-hhhccCCC---C------ccccccc
Q 017059 165 P-TFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDPSL-ASAINQET---G------RLRFCWS 232 (378)
Q Consensus 165 P-~~lG~~~~~~~~~~~kvv~K~-~~~EkvGvl~~~~~~g~~~vvEYsel~~~~-~~~~~~~~---g------~l~f~~g 232 (378)
. .++..+...++++.+-+.+.. .+...-|++... .+| .|+++.|=|... +..+.-+. + .......
T Consensus 152 l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d-~~~--~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 228 (451)
T 1yp2_A 152 YEKFIQAHRETDADITVAALPMDEKRATAFGLMKID-EEG--RIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIA 228 (451)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEEC-TTS--BEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEE
T ss_pred HHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEEC-CCC--CEEEEEECCCchhhccccccccccccccccccCCcceE
Confidence 3 467777777887754332211 123356776653 344 455555544321 11000000 0 0011236
Q ss_pred cceeeeEeHHHHHHHhh
Q 017059 233 NVCLHMFTLDFLNQVAN 249 (378)
Q Consensus 233 Ni~~~~~~l~fl~~~~~ 249 (378)
|+.+.+|+-+.+.+.++
T Consensus 229 ~~Giy~~~~~~l~~~l~ 245 (451)
T 1yp2_A 229 SMGIYVISKDVMLNLLR 245 (451)
T ss_dssp EEEEEEEEHHHHHHHHH
T ss_pred EeeEEEEcHHHHHHHHH
Confidence 88899999998876654
No 23
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=95.07 E-value=0.23 Score=46.01 Aligned_cols=187 Identities=16% Similarity=0.116 Sum_probs=95.9
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||+- ..||.++|+ .|+++++..++++... ++. .++|.|+. ..+.+.++|.+...
T Consensus 12 ~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~~---------------gi~-~i~vv~~~-~~~~i~~~~~~~~~ 71 (281)
T 3juk_A 12 YGTRFLPITKTIPKEMLPI---VDKPLIQYAVEEAMEA---------------GCE-VMAIVTGR-NKRSLEDYFDTSYE 71 (281)
T ss_dssp CCGGGTTGGGTSCGGGCBS---SSSBHHHHHHHHHHHH---------------TCC-EEEEEECT-THHHHHHHTSCCC-
T ss_pred CCcccCccccCCCcccceE---CCEEHHHHHHHHHHhC---------------CCC-EEEEEecC-CHHHHHHHHhcchh
Confidence 8999987 889999988 4899999999988542 111 36666764 45788888875422
Q ss_pred CCCCCCcEEEEEcCce---eEEe---cCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcc
Q 017059 87 FGLESDQVTFFQQGTI---PCVS---KDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 160 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~---P~~~---~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~ 160 (378)
+. .. + -..+.. ..+. ...++.+. ....|-|.|+..... ++.+ +-+++.|.+.|.+.
T Consensus 72 l~--~~-l--~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~Gt~~al~~a-----~~~l---~~~~~lv~~~D~~~- 133 (281)
T 3juk_A 72 IE--HQ-I--QGTNKENALKSIRNIIEKCCFSYV----RQKQMKGLGHAILTG-----EALI---GNEPFAVILADDLC- 133 (281)
T ss_dssp ------------CCHHHHHHHHHHHHHHCEEEEE----ECSSCCCHHHHHHHT-----HHHH---CSSCEEEECTTEEE-
T ss_pred hh--hh-h--hcccchhhhhhhhccccCccEEEE----ecCCCCCcHHHHHHH-----HHHc---CCCCEEEEeCCeec-
Confidence 11 00 0 000000 0000 00000000 011255654433221 2333 23678999999944
Q ss_pred cccC------HHHhHHHHhcCCc-EEEEEecccCCCccceeEEEecC--CCCeEEEEecCCChhhhhhccCCCCcccccc
Q 017059 161 RVAD------PTFLGYFIDKGVS-AGAKVVRKAYPQEKVGVFVRRGK--GGPLTVVEYSELDPSLASAINQETGRLRFCW 231 (378)
Q Consensus 161 ~~~D------P~~lG~~~~~~~~-~~~kvv~K~~~~EkvGvl~~~~~--~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~ 231 (378)
. .| -.++-.+...++. +++..++.. ....-|++... . +|...|.++.|=|.... ... ..
T Consensus 134 ~-~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~-~~~~~g~v~~~-~~~~g~~~v~~~~Ekp~~~~-------~~~--~~ 201 (281)
T 3juk_A 134 I-SHDHPSVLKQMTSLYQKYQCSIVAIEEVALE-EVSKYGVIRGE-WLEEGVYEIKDMVEKPNQED-------APS--NL 201 (281)
T ss_dssp E-CTTSCCHHHHHHHHHHHHCSCEEEEEECCTT-TGGGSEEEEEE-EEETTEEEEEEEEESCCTTT-------CSC--SE
T ss_pred c-CccchHHHHHHHHHHHHcCCCEEEEEEechh-hcccCCEEEec-cCCCCceEEeEEEECcCCCC-------CCc--ce
Confidence 3 34 1255666665652 223333322 23456777553 2 45345656655443110 011 23
Q ss_pred ccceeeeEeHHHHHH
Q 017059 232 SNVCLHMFTLDFLNQ 246 (378)
Q Consensus 232 gNi~~~~~~l~fl~~ 246 (378)
.|+.+.+|+-+.++.
T Consensus 202 ~~~GiYi~~~~~l~~ 216 (281)
T 3juk_A 202 AVIGRYILTPDIFEI 216 (281)
T ss_dssp EEEEEEEECTTHHHH
T ss_pred eEEEEEEECHHHHHH
Confidence 588889999887743
No 24
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=95.02 E-value=0.45 Score=46.91 Aligned_cols=167 Identities=18% Similarity=0.166 Sum_probs=92.6
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+|||||...||.++|+ .|+++++..++++... +.. .++|.|+.. .+.+.+++.+.
T Consensus 15 ~g~Rl~~~~pK~l~~i---~gkpli~~~l~~l~~~---------------~~~-~iivv~~~~-~~~i~~~~~~~----- 69 (456)
T 2v0h_A 15 KGTRMYSDLPKVLHTI---AGKPMVKHVIDTAHQL---------------GSE-NIHLIYGHG-GDLMRTHLANE----- 69 (456)
T ss_dssp CCGGGCSSSCGGGSEE---TTEEHHHHHHHHHHHT---------------TCS-CEEEEECTT-HHHHHHHTTTC-----
T ss_pred CCcccCCCCCccccEE---CCccHHHHHHHHHHhC---------------CCC-cEEEEeCCC-HHHHHHHhhcC-----
Confidence 8999997789999988 6899999999887532 111 366777654 46677776642
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCc-hhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNG-GVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG-~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
.+.+..|+ .+-|.+ .++.++.. + ..-+++.+.+.|.++. ++..+
T Consensus 70 ---~~~~v~~~---------------------~~~g~~~~~~~~~~~------~--~~~~~vlv~~~D~P~i---~~~~i 114 (456)
T 2v0h_A 70 ---QVNWVLQT---------------------EQLGTAHAVQQAAPF------F--KDNENIVVLYGDAPLI---TKETL 114 (456)
T ss_dssp ---CCEEEECS---------------------CCCCHHHHHHHHGGG------C--CTTSEEEEEETTCTTC---CHHHH
T ss_pred ---CcEEEeCC---------------------CCCCcHHHHHHHHHh------c--CCCCeEEEEcCCccee---CHHHH
Confidence 12222211 122332 34444422 1 1257999999999884 34433
Q ss_pred HHHHhc--CCcEEEEEecccCCCccceeEEEecCCCCe-EEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 169 GYFIDK--GVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 169 G~~~~~--~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~-~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
--..+. ..++.+-+.+...| ..-|.+... +|+. .++|..+..+... .....|+..+.|+.+.|.
T Consensus 115 ~~l~~~~~~~~~~~~~~~~~~~-~~~g~v~~~--~g~v~~~~ek~~~~~~~~----------~~~~~~~Giy~~~~~~l~ 181 (456)
T 2v0h_A 115 EKLIEAKPENGIALLTVNLDNP-TGYGRIIRE--NGNVVAIVEQKDANAEQL----------NIKEVNTGVMVSDGASFK 181 (456)
T ss_dssp HHHHHHCCTTSEEEEEEECSSC-TTSCEEEEE--TTEEEEEECTTTCCHHHH----------TCCEEEEEEEEEEHHHHH
T ss_pred HHHHHHHhcCCEEEEEeecCCC-CccceEEEc--CCcEEEEEECCCCChhHh----------cCcEEEEEEEEEEHHHHH
Confidence 333221 24554433333333 234655543 4532 2334333322111 012368888999998887
Q ss_pred HHhh
Q 017059 246 QVAN 249 (378)
Q Consensus 246 ~~~~ 249 (378)
+.++
T Consensus 182 ~~l~ 185 (456)
T 2v0h_A 182 KWLA 185 (456)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6654
No 25
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=94.55 E-value=0.45 Score=44.89 Aligned_cols=198 Identities=16% Similarity=0.111 Sum_probs=104.7
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+|||||. ||.++|++ +.|+++++..++++... ++. .++|.|.....+.+.++|.....++
T Consensus 15 ~g~R~~~--~K~l~~ig-~~g~pli~~~l~~~~~~---------------~~~-~i~vv~~~~~~~~~~~~~~~~~~~~- 74 (303)
T 3pnn_A 15 MGSRYGS--LKQLDGIG-PGGDTIMDYSVYDAIRA---------------GFG-RLVFVIRHSFEKEFREKILTKYEGR- 74 (303)
T ss_dssp CBCTTSS--BCCCCCCS-TTSCCHHHHHHHHHHHH---------------TCC-EEEEEECGGGHHHHHHHTHHHHTTT-
T ss_pred CcccCCC--CceEeEcC-CCCeeHHHHHHHHHHHC---------------CCC-eEEEEcCchHHHHHHHHHHHHhccC-
Confidence 8999985 89999874 25899999999887432 121 4778887666688888987643333
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccC--HHH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVAD--PTF 167 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~D--P~~ 167 (378)
.+|.+..|+..- +.....+.... ..|-|.|+-.....+ .+ . +.+.|.+.|++. . .| -.+
T Consensus 75 --~~i~~~~~~~~~-~~~~~~~~~~~-----~~~~Gt~~al~~a~~--~i-----~--~~~lV~~gD~l~-~-~~~~~~l 135 (303)
T 3pnn_A 75 --IPVELVFQELDR-LPEGFSCPEGR-----EKPWGTNHAVLMGRD--AI-----R--EPFAVINADDFY-G-RNGFEVL 135 (303)
T ss_dssp --SCEEEEECCTTC-CCTTCCCCTTC-----CSCCCHHHHHHTTTT--TC-----C--SCEEEEESSCBC-C-HHHHHHH
T ss_pred --CcEEEEeccccc-ccccccccccc-----cccCCcHHHHHHHHH--hc-----C--CCEEEEECCeec-C-HHHHHHH
Confidence 357777776211 11111211110 235666654433322 22 1 345677888854 2 22 116
Q ss_pred hHHHHh---cCCcEEEEEecccCC-Cccc----eeEEEecCCCCe-EEEEecCCChhhh-hhccCCCCc----ccccccc
Q 017059 168 LGYFID---KGVSAGAKVVRKAYP-QEKV----GVFVRRGKGGPL-TVVEYSELDPSLA-SAINQETGR----LRFCWSN 233 (378)
Q Consensus 168 lG~~~~---~~~~~~~kvv~K~~~-~Ekv----Gvl~~~~~~g~~-~vvEYsel~~~~~-~~~~~~~g~----l~f~~gN 233 (378)
+-++.+ .+.++++-+.+-.+| .+-+ |++... .+|+. .++|-.+.++... ....+..|. ..-...|
T Consensus 136 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~d-~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 214 (303)
T 3pnn_A 136 ARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVD-EKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVS 214 (303)
T ss_dssp HHHHHTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEEC-TTSBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEE
T ss_pred HHHHHHhccccCceEEEEEECCCccCccCceeeeeEeeC-CCCcEEEEEECCCCccccccccccccccccccCCCCCEEE
Confidence 666654 456666444333334 2222 565443 35643 3455544321100 000001111 0112468
Q ss_pred ceeeeEeHHHHHHH
Q 017059 234 VCLHMFTLDFLNQV 247 (378)
Q Consensus 234 i~~~~~~l~fl~~~ 247 (378)
++...|+-+.++.+
T Consensus 215 ~GiY~f~~~~~~~l 228 (303)
T 3pnn_A 215 MNMWGFTPDYFDYS 228 (303)
T ss_dssp EEEEEECTHHHHHH
T ss_pred EEEEEECHHHHHHH
Confidence 88899998887554
No 26
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=94.26 E-value=0.27 Score=44.76 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=37.2
Q ss_pred ccccCCC-CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhc
Q 017059 10 QGTRLGS-SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGH 84 (378)
Q Consensus 10 qGtRLG~-~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~ 84 (378)
+|||||. +.||.++|+ .|+++++..++++.+. +..-.++|.|+....+...+.++++
T Consensus 13 ~g~Rm~~~~~pK~l~~l---~Gkpll~~~l~~~~~~---------------~~~~~ivvv~~~~~~~~~~~~~~~~ 70 (246)
T 3f1c_A 13 KGTRMGNVSMPKQFLPL---NGKPIIVHTVEKFILN---------------TRFDKILISSPKEWMNHAEDNIKKY 70 (246)
T ss_dssp ----C-CSSCCGGGSEE---TTEEHHHHHHHHHHTC---------------TTCSEEEEEECGGGHHHHHHHHHHH
T ss_pred cccccCCCCCCCeEEEE---CCeeHHHHHHHHHHcC---------------CCCCEEEEEeCHHHHHHHHHHHHHh
Confidence 8999998 779999988 6899999988877421 1112577777776555567777764
No 27
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=93.49 E-value=0.51 Score=41.98 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=67.0
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||| ||.++|+ .|+++++..++++++.. .+. .++|.|. ++.+.+++++ +|.
T Consensus 14 ~g~R~~---~K~l~~i---~gkpll~~~l~~~~~~~--------------~~~-~ivvv~~---~~~i~~~~~~---~~~ 66 (228)
T 1ezi_A 14 NSKGLP---LKNLRKM---NGISLLGHTINAAISSK--------------CFD-RIIVSTD---GGLIAEEAKN---FGV 66 (228)
T ss_dssp SCSSST---TTTTCEE---TTEEHHHHHHHHHHHHC--------------CCS-EEEEEES---CHHHHHHHHH---TTC
T ss_pred CCCCCC---Cccccee---CCcCHHHHHHHHHHhCC--------------CCC-EEEEECC---CHHHHHHHHH---cCC
Confidence 799999 9999988 59999999988875421 111 4667674 4667777775 232
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHhH
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLG 169 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~lG 169 (378)
++ +.++ .. ..+.|-| ...+++. .++.+ ..+.+++.+.+.|+++. +|..+-
T Consensus 67 ---~~--~~~~----------------~~--~~~~~~g-~~~sv~~--~l~~~-~~~~d~vlv~~~D~P~~---~~~~i~ 116 (228)
T 1ezi_A 67 ---EV--VLRP----------------AE--LASDTAS-SISGVIH--ALETI-GSNSGTVTLLQPTSPLR---TGAHIR 116 (228)
T ss_dssp ---EE--EECC----------------C--------CH-HHHHHHH--HHHHH-TCCSEEEEECCTTCTTC---CHHHHH
T ss_pred ---EE--EeCc----------------hH--HcCCCCC-hHHHHHH--HHHHh-CCCCCEEEEEcCCCCcC---CHHHHH
Confidence 22 2211 00 1112222 2222211 12333 23568999999999984 454443
Q ss_pred HH----HhcCCcEEEEEeccc
Q 017059 170 YF----IDKGVSAGAKVVRKA 186 (378)
Q Consensus 170 ~~----~~~~~~~~~kvv~K~ 186 (378)
-. ...++++.+-+++..
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~ 137 (228)
T 1ezi_A 117 EAFSLFDEKIKGSVVSACPME 137 (228)
T ss_dssp HHHTTCCTTTCCCEEEEEECS
T ss_pred HHHHHHHhcCCCEEEEEEecC
Confidence 33 334556665555443
No 28
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=93.05 E-value=0.42 Score=42.91 Aligned_cols=164 Identities=16% Similarity=0.226 Sum_probs=90.7
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||| ||-++|+ .|+++++..++++... +..-.++|.|+. +.+.++++++ |.
T Consensus 12 ~~~R~~---~K~l~~i---~g~pli~~~i~~~~~~---------------~~~~~ivvv~~~---~~i~~~~~~~---~~ 64 (245)
T 1h7e_A 12 GSSRLP---GKPLLDI---VGKPMIQHVYERALQV---------------AGVAEVWVATDD---PRVEQAVQAF---GG 64 (245)
T ss_dssp CCSSST---TGGGCEE---TTEEHHHHHHHHHHTC---------------TTCCEEEEEESC---HHHHHHHHHT---TC
T ss_pred cCCCCC---CCccccc---CCchHHHHHHHHHHhC---------------CCCCeEEEECCc---HHHHHHHHHc---CC
Confidence 799997 9999988 5999999988877421 221257777754 6788888763 31
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH---
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT--- 166 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~--- 166 (378)
.++. +.+ ..+.|.++++.++.. + +-+++.+.+.|.++. +|.
T Consensus 65 -----~~~~-------~~~------------~~~~g~~~~~~~~~~------~---~~~~~lv~~~D~P~~---~~~~i~ 108 (245)
T 1h7e_A 65 -----KAIM-------TRN------------DHESGTDRLVEVMHK------V---EADIYINLQGDEPMI---RPRDVE 108 (245)
T ss_dssp -----EEEE-------CCS------------CCSSHHHHHHHHHHH------S---CCSEEEECCTTCTTC---CHHHHH
T ss_pred -----eEEe-------CCC------------ccCCcHHHHHHHHHh------C---CCCEEEEEcCCcCcC---CHHHHH
Confidence 1111 100 113344555554431 1 457899999999984 343
Q ss_pred -HhHHHHhc-CCcEEEEEecccCCC-----ccceeEEEecCCCCeEEEEecC--CChhhhhhccCCCCccccccccceee
Q 017059 167 -FLGYFIDK-GVSAGAKVVRKAYPQ-----EKVGVFVRRGKGGPLTVVEYSE--LDPSLASAINQETGRLRFCWSNVCLH 237 (378)
Q Consensus 167 -~lG~~~~~-~~~~~~kvv~K~~~~-----EkvGvl~~~~~~g~~~vvEYse--l~~~~~~~~~~~~g~l~f~~gNi~~~ 237 (378)
++..+... +.++.+-+++. .+. ..++++. +++|+. +.+++ .+.. +.+ ...... .|....
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~g~~--~~~~~~~~~~~-r~~-----~~~~~~-~~~g~y 176 (245)
T 1h7e_A 109 TLLQGMRDDPALPVATLCHAI-SAAEAAEPSTVKVVV--NTRQDA--LYFSRSPIPYP-RNA-----EKARYL-KHVGIY 176 (245)
T ss_dssp HHHHHHHHCTTCCEEEEEEEE-CHHHHTCTTSCEEEE--CTTCBE--EEEESSCSSCC-TTG-----GGCCEE-EEEEEE
T ss_pred HHHHHHHhCCCCCEEEEeecC-CHHHhcCCCCcEEEE--CCCCcE--EEeecCCCCCC-ccc-----ccCcee-EEEEEE
Confidence 34444445 67765444333 111 1223322 235643 33433 2211 110 001122 488889
Q ss_pred eEeHHHHHHHh
Q 017059 238 MFTLDFLNQVA 248 (378)
Q Consensus 238 ~~~l~fl~~~~ 248 (378)
.|+.+.|.+..
T Consensus 177 ~~~~~~l~~~~ 187 (245)
T 1h7e_A 177 AYRRDVLQNYS 187 (245)
T ss_dssp EEEHHHHHHGG
T ss_pred EcCHHHHHHHH
Confidence 99999886654
No 29
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=92.69 E-value=0.57 Score=41.96 Aligned_cols=116 Identities=12% Similarity=0.143 Sum_probs=68.1
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||+ +|-++|+ .|+++++..++++++.. .+. .+++-| .++.+.+++++ +|.
T Consensus 13 ~s~R~~---~K~l~~i---~Gkpli~~~i~~~~~~~--------------~~~-~ivv~~---~~~~i~~~~~~---~g~ 65 (229)
T 1qwj_A 13 GSKGIP---LKNIKRL---AGVPLIGWVLRAALDAG--------------VFQ-SVWVST---DHDEIENVAKQ---FGA 65 (229)
T ss_dssp CCSSSS---CTTTSEE---TTEEHHHHHHHHHHHHT--------------CCS-EEEEEE---SCHHHHHHHHH---TTC
T ss_pred CCCCCC---CcccceE---CCEEHHHHHHHHHHhCC--------------CcC-EEEEEC---ChHHHHHHHHH---cCC
Confidence 899996 6999988 69999999998875431 111 356666 35778888875 232
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH---
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT--- 166 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~--- 166 (378)
.++.++ ..+ ....+.|.+.+..+|.. + .+-+++.+.+.|+++. +|.
T Consensus 66 -----~~~~~~--------~~~-------~~~~~~~~~~v~~al~~------~--~~~d~vlv~~~D~Pli---~~~~i~ 114 (229)
T 1qwj_A 66 -----QVHRRS--------SET-------SKDSSTSLDAIVEFLNY------H--NEVDIVGNIQATSPCL---HPTDLQ 114 (229)
T ss_dssp -----EEEECC--------GGG-------SSTTCCHHHHHHHHHTT------C--TTCSEEEEECTTCTTC---CHHHHH
T ss_pred -----EEEeCh--------hhh-------cCCCCcHHHHHHHHHHh------c--CCCCEEEEecCCCCcC---CHHHHH
Confidence 223221 000 00012222344555432 1 2568999999999995 444
Q ss_pred -HhHHHHhcCCcEEEEEe
Q 017059 167 -FLGYFIDKGVSAGAKVV 183 (378)
Q Consensus 167 -~lG~~~~~~~~~~~kvv 183 (378)
++..+...+.++.+.+.
T Consensus 115 ~l~~~~~~~~~~~~~~~~ 132 (229)
T 1qwj_A 115 KVAEMIREEGYDSVFSVV 132 (229)
T ss_dssp HHHHHHHSSCCSEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEe
Confidence 34444456677655554
No 30
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=92.31 E-value=3.1 Score=37.75 Aligned_cols=175 Identities=15% Similarity=0.175 Sum_probs=92.2
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||| +|.++|+ .|+++++..++++... +. -.++|.|.. +.+.+++++ +|.
T Consensus 12 ~g~R~~---~K~l~~~---~gkpli~~~l~~l~~~---------------~~-~~ivvv~~~---~~i~~~~~~---~~~ 63 (262)
T 1vic_A 12 ASSRLP---GKPLADI---KGKPMIQHVFEKALQS---------------GA-SRVIIATDN---ENVADVAKS---FGA 63 (262)
T ss_dssp CCSSST---TGGGCEE---TTEEHHHHHHHHHHHT---------------TC-SEEEEEESC---HHHHHHHHH---TTC
T ss_pred CCCCCC---CCccccC---CCeEHHHHHHHHHHhC---------------CC-ceEEEECCc---HHHHHHHHh---cCC
Confidence 799997 5999988 5999999988887532 22 246666753 567777775 231
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-HHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP-TFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP-~~l 168 (378)
.++.++ ...|.|-|.+.. +++.+...+-+++.+.+.|.++....+- .++
T Consensus 64 -----~~~~~~-------------------~~~~~g~~~~~~------~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~ 113 (262)
T 1vic_A 64 -----EVCMTS-------------------VNHNSGTERLAE------VVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVA 113 (262)
T ss_dssp -----EEEECC-------------------CSSCCHHHHHHH------HHHHTTCCTTCEEEECCTTCTTCCHHHHHHHH
T ss_pred -----EEEECC-------------------ccccCChHHHHH------HHHHhccCCCCEEEEEeCCcCccCHHHHHHHH
Confidence 122111 012334343222 2333322356899999999998532211 244
Q ss_pred HHHHhcCCcEEEEEecccCCC----ccceeEEEecCCCCeEEEEecC--CChhhhhhc-------cCCCCccccccccce
Q 017059 169 GYFIDKGVSAGAKVVRKAYPQ----EKVGVFVRRGKGGPLTVVEYSE--LDPSLASAI-------NQETGRLRFCWSNVC 235 (378)
Q Consensus 169 G~~~~~~~~~~~kvv~K~~~~----EkvGvl~~~~~~g~~~vvEYse--l~~~~~~~~-------~~~~g~l~f~~gNi~ 235 (378)
..+...++++.+-+++...+. ...+.++. +.+|+. +.+++ +|. .+... ..++.. .| ..|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v--~~f~~~~~~~-~r~~~~~~~~~~~~~~p~-~~-~~~~g 187 (262)
T 1vic_A 114 DNLAKFNVNMASLAVKIHDAEELFNPNAVKVLT-DKDGYV--LYFSRSVIPY-DRDQFMNLQDVQKVQLSD-AY-LRHIG 187 (262)
T ss_dssp HHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEE-CTTSBE--EEEESSCSSC-CHHHHTTCSCGGGCCCCT-TC-EEEEE
T ss_pred HHHHhcCCCEEEEEEecCCHHHhcCCCceEEEE-CCCCCE--eeeecCCCCc-CCcccccccccccccccc-ce-EEEEE
Confidence 555556777765455433221 11222222 235653 33433 221 11110 001111 13 36888
Q ss_pred eeeEeHHHHHHHh
Q 017059 236 LHMFTLDFLNQVA 248 (378)
Q Consensus 236 ~~~~~l~fl~~~~ 248 (378)
..+|+.+++....
T Consensus 188 iy~~~~~~l~~~~ 200 (262)
T 1vic_A 188 IYAYRAGFIKQYV 200 (262)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEEeeHHHHHHHH
Confidence 8999998887654
No 31
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=92.13 E-value=0.7 Score=40.97 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=33.5
Q ss_pred ccccCCC-CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHh
Q 017059 10 QGTRLGS-SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEG 83 (378)
Q Consensus 10 qGtRLG~-~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~ 83 (378)
.|||||- +.||.++|+ .|+++++..++++... .++ -.++|.|+....+.+.+++++
T Consensus 12 ~g~R~~~~~~~K~l~~i---~g~pli~~~l~~l~~~--------------~~~-~~i~vv~~~~~~~~~~~~~~~ 68 (236)
T 2vsh_A 12 TGTRMGISNLPKQFLEL---GDRPILIHTIEKFVLE--------------PSI-EKIVVGVHGDWVSHAEDLVDK 68 (236)
T ss_dssp ----------CGGGSEE---TTEEHHHHHHHHHHTC--------------TTC-CCEEEEECGGGHHHHHHHHHH
T ss_pred cccccCCCCCCCeeeee---CCccHHHHHHHHHHcC--------------CCC-CeEEEEeCHHHHHHHHHHHHh
Confidence 8999995 569999988 5899999988877421 011 146777776655667888775
No 32
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=91.86 E-value=1.2 Score=42.66 Aligned_cols=179 Identities=16% Similarity=0.153 Sum_probs=94.5
Q ss_pred ccccCC----CCCCCcceeccCCCC-CChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhc
Q 017059 10 QGTRLG----SSDPKGCVNIGLPSG-KSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGH 84 (378)
Q Consensus 10 qGtRLG----~~~pKg~~~i~l~~~-ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~ 84 (378)
.||||+ ...||-++|+ .| ++++|..++++... .+.. .++|.|.....+.+.+++.+.
T Consensus 11 ~GtRl~Pls~~~~pK~ll~l---~g~~pli~~~l~~l~~~--------------~~~~-~iivvt~~~~~~~i~~~l~~~ 72 (336)
T 2x65_A 11 SGERFWPLSTPETPKQFLKL---FGNKSLMRWTFERVLEE--------------MDPK-DVIVVTHKDYVERTKKELPEL 72 (336)
T ss_dssp BCGGGTTTSCTTCBGGGCCC---BTTBCHHHHHHHHHHTT--------------CCGG-GEEEEEEGGGHHHHHHHCTTS
T ss_pred CCccCCCCcCCCCCceEEEC---CCCCcHHHHHHHHHhcc--------------CCCC-cEEEEcChHHHHHHHHHhhcc
Confidence 899998 5689999977 34 99999999987432 0122 356666655445566666542
Q ss_pred CCCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhH-HhhcCcHHHHHHHCCceEEEEEecCCCccccc
Q 017059 85 KYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYS-ALKSSKLLEDMATRGIKYIDCYGVDNALVRVA 163 (378)
Q Consensus 85 ~~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~-aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~ 163 (378)
. ..++ +.| + .|-|.|.... ++. .+ ..-+++.+.+.|.+..
T Consensus 73 ~-----~~~i--i~e----------------~-----~~~gta~ai~~a~~------~~--~~~~~~lvl~~D~~~~--- 113 (336)
T 2x65_A 73 P-----DENI--IAE----------------P-----MKKNTAPACFIGTK------LA--DDDEPVLVLPADHRIP--- 113 (336)
T ss_dssp C-----GGGE--EEE----------------S-----SCCCHHHHHHHHHT------TS--CTTCEEEEEETTCBCC---
T ss_pred c-----cceE--EeC----------------C-----CCCCcHHHHHHHHH------hh--CCCCEEEEEcCCceec---
Confidence 1 0111 111 1 1223343222 221 11 2247899999999984
Q ss_pred CHH----Hh----HHHHhcCCcEEEEEecccCCCccceeEEEecC--CCCeEEEEecCCChhhhhhccCCCCcccccccc
Q 017059 164 DPT----FL----GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGK--GGPLTVVEYSELDPSLASAINQETGRLRFCWSN 233 (378)
Q Consensus 164 DP~----~l----G~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~--~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gN 233 (378)
++. ++ -++...+..+.+-+. .+.|...-|.+..... ++...|..+.|=|.....+..-..|. | .-|
T Consensus 114 ~~~~~~~~l~~~~~~~~~~~~~vt~~i~-p~~~~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~--y-~~n 189 (336)
T 2x65_A 114 DTKKFWKTVKKALDALEKYDGLFTFGIV-PTRPETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFVESGR--F-LWN 189 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSEEEEEEC-CCSCCSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHHHHHTC--E-EEE
T ss_pred cHHHHHHHHHHHHHHHHhcCCeEEEEee-cccCCCCceEEEECCccCCCccEEEEEEECCChHHHHHHHhcCC--e-EEE
Confidence 332 12 223344655545443 3445556787754210 11135555555444321110001222 2 248
Q ss_pred ceeeeEeHHHHHHHhh
Q 017059 234 VCLHMFTLDFLNQVAN 249 (378)
Q Consensus 234 i~~~~~~l~fl~~~~~ 249 (378)
...++|+.+.+.+.++
T Consensus 190 ~Giy~~~~~~ll~~l~ 205 (336)
T 2x65_A 190 SGMFLWKAREFIEEVK 205 (336)
T ss_dssp EEEEEEEHHHHHHHHH
T ss_pred eeeEEEEHHHHHHHHH
Confidence 8889999998854443
No 33
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=91.74 E-value=2.4 Score=38.94 Aligned_cols=171 Identities=13% Similarity=0.140 Sum_probs=94.7
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHH-HHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQA-ERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFG 88 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~-e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fg 88 (378)
.||||+ +|-++|+ .||++++..+ +++++ .++. .+++-|. ++.+.+++++ ||
T Consensus 11 ~stR~~---~K~L~~i---~GkPli~~~i~~~~~~---------------~~~~-~vvVvt~---~~~i~~~~~~---~g 62 (253)
T 4fcu_A 11 SSSRLP---GKPLLLI---HDRPMILRVVDQAKKV---------------EGFD-DLCVATD---DERIAEICRA---EG 62 (253)
T ss_dssp CCTTST---TGGGSEE---TTEEHHHHHHHHHHTC---------------TTCC-EEEEEES---CHHHHHHHHT---TT
T ss_pred CCCCCC---CCceeeE---CCeEhHHHHHHHHHHh---------------cCCC-EEEEECC---HHHHHHHHHH---cC
Confidence 899997 5999988 7999999988 87632 1111 3566664 5778888875 44
Q ss_pred CCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 89 LESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 89 l~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
. ++.+-.|. .+.|.+.+..++ +.+...+.+++.+.+.|+++. +|..|
T Consensus 63 ~---~v~~~~~~---------------------~~~Gt~~i~~a~------~~~~~~~~d~vlv~~gD~Pli---~~~~i 109 (253)
T 4fcu_A 63 V---DVVLTSAD---------------------HPSGTDRLSEVA------RIKGWDADDIIVNVQGDEPLL---PAQLV 109 (253)
T ss_dssp C---CEEECCTT---------------------CCCHHHHHHHHH------HHHTCCTTCEEEECCTTCTTC---CHHHH
T ss_pred C---eEEEeCCC---------------------CCChHHHHHHHH------HhcCcCCCCEEEEEeCCcccC---CHHHH
Confidence 3 12110111 123433344443 333223568999999999995 45544
Q ss_pred ----HHHHhc-CCcEEEEEec------ccCCCccceeEEEecCCCCeEEEEecC--CChhhhhhcc--CCCCcccccccc
Q 017059 169 ----GYFIDK-GVSAGAKVVR------KAYPQEKVGVFVRRGKGGPLTVVEYSE--LDPSLASAIN--QETGRLRFCWSN 233 (378)
Q Consensus 169 ----G~~~~~-~~~~~~kvv~------K~~~~EkvGvl~~~~~~g~~~vvEYse--l~~~~~~~~~--~~~g~l~f~~gN 233 (378)
..+.+. +.++++-+++ -.+|.. ++|++. ++|+ ++-+++ +|.. +.... +.+....| ..|
T Consensus 110 ~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~-~kvv~d--~~g~--~l~fsr~~ip~~-r~~~~~~~~~~~~~~-~~~ 182 (253)
T 4fcu_A 110 QQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSI-VKVVMS--KQNE--ALYFSRATIPYD-RDGAKRDEPTLHTQA-FRH 182 (253)
T ss_dssp HHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTS-CEEEEC--TTSB--EEEEESSCCSCC-TTTSSSSSCCCCSCC-EEE
T ss_pred HHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCc-cEEEEC--CCCe--EEEecCCCCCCC-CCcccccccccccce-eEE
Confidence 333343 3455433332 123443 555443 3564 333454 4321 11100 00001123 359
Q ss_pred ceeeeEeHHHHHHHh
Q 017059 234 VCLHMFTLDFLNQVA 248 (378)
Q Consensus 234 i~~~~~~l~fl~~~~ 248 (378)
+++..|+-++|++..
T Consensus 183 ~GiY~f~~~~l~~~~ 197 (253)
T 4fcu_A 183 LGLYAYRVSLLQEYV 197 (253)
T ss_dssp EEEEEEEHHHHHHHT
T ss_pred EEEEEeCHHHHHHHH
Confidence 999999999998875
No 34
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=90.40 E-value=1.5 Score=40.81 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=40.2
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHh
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEG 83 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~ 83 (378)
.||||+- +.||.++|+ .|+++++..++++... ++. .++|.|+.. .+.+.+++.+
T Consensus 18 ~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~~---------------gi~-~i~vv~~~~-~~~i~~~~~~ 74 (302)
T 2e3d_A 18 LGTRMLPATKAIPKEMLPL---VDKPLIQYVVNECIAA---------------GIT-EIVLVTHSS-KNSIENHFDT 74 (302)
T ss_dssp CCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHHT---------------TCC-EEEEEECGG-GHHHHHHHSC
T ss_pred CcccCCccccCCCceeeEE---CCeEHHHHHHHHHHHC---------------CCC-EEEEEeCCC-HHHHHHHHhc
Confidence 8999985 569999998 5899999999887531 222 467777664 6778888764
No 35
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=89.75 E-value=0.48 Score=43.15 Aligned_cols=160 Identities=18% Similarity=0.232 Sum_probs=89.8
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
+|||||.+.||-++++ .|+++++..++++++. ..+ -.++|.|+....+...+++.+
T Consensus 17 ~g~Rmg~~~~K~l~~l---~Gkpll~~~l~~~~~~--------------~~~-~~ivVv~~~~~~~~~~~~~~~------ 72 (231)
T 3q80_A 17 SGERLAVGVPKAFYQL---DGQTLIERAVDGLLDS--------------GVV-DTVVVAVPADRTDEARQILGH------ 72 (231)
T ss_dssp CCTTTCSSSCGGGCEE---TTEEHHHHHHHHHHHT--------------SCC-CEEEEEECGGGHHHHHHHHGG------
T ss_pred CCccCCCCCCceEEEE---CCeEHHHHHHHHHHhC--------------CCC-CeEEEECChHHHHHHHHHhcC------
Confidence 8999998889999988 6999999998877432 011 247777777655666666543
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHH-CCceEEEEEecCCCcccccCHHHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT-RGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~-~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
.+.+.. .|. .. ...++.+|.. +.. .+.+++.|...|-++. +|..|
T Consensus 73 ---~v~~v~---------gg~------~r-------~~sv~~gl~~------~~~~~~~d~Vlv~~~d~Pli---~~~~i 118 (231)
T 3q80_A 73 ---RAMIVA---------GGS------NR-------TDTVNLALTV------LSGTAEPEFVLVHDAARALT---PPALV 118 (231)
T ss_dssp ---GCEEEE---------CCS------SH-------HHHHHHHHGG------GC---CCSEEEECCTTCTTC---CHHHH
T ss_pred ---CeEEEc---------CCC------ch-------HHHHHHHHHH------hhhcCCCCEEEEEcCCcCCC---CHHHH
Confidence 122111 111 00 1345555532 111 1357999999999995 56655
Q ss_pred HHHHh---cCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHH
Q 017059 169 GYFID---KGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLN 245 (378)
Q Consensus 169 G~~~~---~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~ 245 (378)
--... .+.+.++-+++-.++ ++. .+.+|. +.+. .+ +...+..|+ =..|+.+.|.
T Consensus 119 ~~li~~~~~~~~~~i~~~p~~dt---~~~---~~~~g~--v~~~---~~-----------r~~l~~~qT-Pq~F~~~~L~ 175 (231)
T 3q80_A 119 ARVVEALRDGYAAVVPVLPLSDT---IKA---VDANGV--VLGT---PE-----------RAGLRAVQT-PQGFTTDLLL 175 (231)
T ss_dssp HHHHHHHHTTCSEEEEEECCSSC---EEE---ECTTSB--EEEC---CC-----------GGGEEEECS-CEEEEHHHHH
T ss_pred HHHHHHHhhcCCeEEEEEeccCC---EEE---EcCCCc--EEEe---cc-----------hhheEEEcC-CcEEEHHHHH
Confidence 44432 224555444433222 222 222342 2222 11 112445666 3788999998
Q ss_pred HHhhc
Q 017059 246 QVANG 250 (378)
Q Consensus 246 ~~~~~ 250 (378)
++.+.
T Consensus 176 ~a~~~ 180 (231)
T 3q80_A 176 RSYQR 180 (231)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 36
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=88.57 E-value=0.52 Score=41.54 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=37.8
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 81 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l 81 (378)
+|||||...||.++|+ .|+++++..++++.... .+. .++|.|+..-.+...+++
T Consensus 12 ~g~R~~~~~~K~l~~~---~g~pli~~~l~~l~~~~--------------~~~-~i~vv~~~~~~~~~~~~~ 65 (223)
T 2xwl_A 12 SGERLRAGRPKAFVTL---GGTPLLEHALSGLRASG--------------VID-RIVIAVPPALTDESKLVF 65 (223)
T ss_dssp CCGGGTSSSCGGGSEE---TTEEHHHHHHHHHHHHS--------------CCS-EEEEEECGGGHHHHHHHT
T ss_pred cCcccCCCCCCeeeEE---CCeEHHHHHHHHHhcCC--------------CCC-eEEEEEcccHHHHHHHHh
Confidence 7999997789999988 58999999988875421 111 467777765444444444
No 37
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=87.07 E-value=0.5 Score=40.95 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=39.7
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHh
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEG 83 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~ 83 (378)
+.|||||- .||.++|+ .|+++++..++++++. ++ =.++|.|+.. ++.+.+++++
T Consensus 9 G~s~R~~~-~~K~l~~~---~g~pli~~~l~~l~~~---------------~~-~~v~vv~~~~-~~~i~~~~~~ 62 (196)
T 3rsb_A 9 GKGTRMGG-VEKPLIKL---CGRCLIDYVVSPLLKS---------------KV-NNIFIATSPN-TPKTKEYINS 62 (196)
T ss_dssp ---CGGGG-SCGGGCEE---TTEEHHHHHHHHHHSS---------------SC-CCEEEECCTT-CHHHHHHHHH
T ss_pred CCCCcCCC-CCccEEEE---CCEEHHHHHHHHHHHC---------------CC-CEEEEEeCCC-hHHHHHHHHh
Confidence 38999986 79999988 6999999998887421 21 2578888776 6778899887
No 38
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=86.17 E-value=0.28 Score=43.10 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.6
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERI 41 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i 41 (378)
+|||||. ||.++|+ .|+++++..++++
T Consensus 12 ~g~Rmg~--~K~l~~i---~g~pll~~~l~~l 38 (197)
T 3d5n_A 12 EGKRFGG--DKLLAKI---DNTPIIMRTIRIY 38 (197)
T ss_dssp CTTCCCS--SGGGSBS---SSSBHHHHHHHHT
T ss_pred CcccCCC--CeeeCEe---CceEHHHHHHHHH
Confidence 8999984 9999987 6899999888876
No 39
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=86.07 E-value=0.86 Score=41.13 Aligned_cols=179 Identities=17% Similarity=0.187 Sum_probs=95.2
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
.||||+- +.||.++|+ .|+++++..++++.+. ++ -.++|.|+.. ++.+.+++.+...
T Consensus 12 ~gtRl~~lt~~~pK~l~~i---~gkpli~~~l~~l~~~---------------g~-~~i~vv~~~~-~~~i~~~~~~~~~ 71 (259)
T 1tzf_A 12 LGTRLSEETIVKPKPMVEI---GGKPILWHIMKMYSVH---------------GI-KDFIICCGYK-GYVIKEYFANYFL 71 (259)
T ss_dssp CC--------CCCGGGCEE---TTEEHHHHHHHHHHHT---------------TC-CEEEEEECTT-HHHHHHHHHTHHH
T ss_pred CcccCCCccCCCCccccEE---CCEEHHHHHHHHHHHC---------------CC-CEEEEEcccC-HHHHHHHHhhccc
Confidence 8999986 679999998 4899999988877531 21 1478888764 4788899886421
Q ss_pred CCCCCCcEEEEEcCceeEEe-cCCcccccCCCccc----cccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCccc
Q 017059 87 FGLESDQVTFFQQGTIPCVS-KDGRFIMETPYKVA----KAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 161 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~-~~g~~~l~~~~~i~----~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~ 161 (378)
++ .++.+..|+. .++ ..+. ..++.+. ..+.|.|+....... .+. +-+++.+.+.|++..
T Consensus 72 ~~---~~~~~~~~~~--~~~~~~~~---~~~~~v~~~~~~~~~gt~~al~~a~~-----~~~--~~~~~lv~~~D~~~~- 135 (259)
T 1tzf_A 72 HM---SDVTFHMAEN--RMEVHHKR---VEPWNVTLVDTGDSSMTGGRLKRVAE-----YVK--DDEAFLFTYGDGVAD- 135 (259)
T ss_dssp HH---SCEEEEGGGT--EEEETTCC---CCCCEEEEEECCSSCCHHHHHHHTGG-----GTT--TSSCEEEEETTEEEC-
T ss_pred cc---cccccccccc--ceeeeecc---ccccceeeeecccccCcHHHHHHHHH-----hcC--CCCcEEEEECCEecc-
Confidence 10 1233333321 000 0000 0122111 135566654433321 111 236788889998542
Q ss_pred ccCH-HHhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEe
Q 017059 162 VADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFT 240 (378)
Q Consensus 162 ~~DP-~~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~ 240 (378)
.|. .++..+...+.++.+..++ +...-|++... +| .|+++.|-|.. + ....|++..+|+
T Consensus 136 -~~~~~~~~~~~~~~~~~t~~~~~---~~~~~g~v~~~--~g--~v~~~~ekp~~-------~-----~~~~~~Giy~~~ 195 (259)
T 1tzf_A 136 -LDIKATIDFHKAHGKKATLTATF---PPGRFGALDIQ--AG--QVRSFQEKPKG-------D-----GAMINGGFFVLN 195 (259)
T ss_dssp -CCHHHHHHHHHHHCCSEEEEEEC---CCCCSEEEEEE--TT--EEEEEEESCSC-------C-----SCCEECCCEEEC
T ss_pred -cCHHHHHHHHHHhCCeEEEEEec---CCCCccEEEEc--CC--EEEEEEecCCC-------C-----CceEEEEEEEeC
Confidence 332 3666776777776543332 23456776654 45 45555552211 0 113577788898
Q ss_pred HHHH
Q 017059 241 LDFL 244 (378)
Q Consensus 241 l~fl 244 (378)
-+++
T Consensus 196 ~~~l 199 (259)
T 1tzf_A 196 PSVI 199 (259)
T ss_dssp GGGG
T ss_pred HHHH
Confidence 8776
No 40
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=85.95 E-value=0.44 Score=41.02 Aligned_cols=103 Identities=18% Similarity=0.102 Sum_probs=62.2
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||| .||.++|+ .|+++++..++++... ++ -.++|.|+.. .+.+.+++++ +|+
T Consensus 15 ~~~R~g--~~K~l~~~---~g~pli~~~l~~l~~~---------------~~-~~i~vv~~~~-~~~~~~~~~~---~~~ 69 (199)
T 2waw_A 15 YSRRLG--TPKQLLPL---GDTTLLGATLAMARRC---------------PF-DQLIVTLGGA-ADEVLEKVEL---DGL 69 (199)
T ss_dssp CCTTTT--SCGGGCEE---TTEEHHHHHHHHHHTS---------------SC-SEEEEEECTT-HHHHHHHSCC---TTS
T ss_pred CCCCCC--CCEEeCEe---CccCHHHHHHHHHHhC---------------CC-CcEEEEeCCC-HHHHHHHhcc---CCC
Confidence 899998 79999988 5899999888877421 21 1567777654 3456665543 221
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCC-CchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDG-NGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G-hG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
.++. + ++ .+.| .++++.+|..- ..+.+++.+...|.++. ++..+
T Consensus 70 -----~~~~-------~-~~------------~~~g~~~~i~~al~~~-------~~~~~~vlv~~~D~P~~---~~~~i 114 (199)
T 2waw_A 70 -----DIVL-------V-DD------------AGLGCSSSLKSALTWV-------DPTAEGIVLMLGDQPGI---TASAV 114 (199)
T ss_dssp -----EEEE-------C-CC------------CCTTCCCHHHHHHHTS-------CTTCSEEEEEETTCTTC---CHHHH
T ss_pred -----EEEE-------C-CC------------cccCHHHHHHHHHHhh-------hccCCeEEEEeCCcccC---CHHHH
Confidence 1111 1 11 0123 35566666432 12568999999999984 45544
Q ss_pred HHHH
Q 017059 169 GYFI 172 (378)
Q Consensus 169 G~~~ 172 (378)
-...
T Consensus 115 ~~l~ 118 (199)
T 2waw_A 115 ASLI 118 (199)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 41
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=85.10 E-value=0.43 Score=42.54 Aligned_cols=30 Identities=30% Similarity=0.603 Sum_probs=26.6
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+|||||.+.||.++|+ .|+++++..+++++
T Consensus 23 ~s~Rm~~~~~K~l~~i---~Gkpli~~~i~~l~ 52 (234)
T 1vpa_A 23 KGERMSENVPKQFLEI---EGRMLFEYPLSTFL 52 (234)
T ss_dssp CCGGGCCSSCGGGCEE---TTEETTHHHHHHHH
T ss_pred chhhcCCCCCceEEEE---CCeEHHHHHHHHHH
Confidence 8999997779999988 69999999888874
No 42
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=85.02 E-value=1.1 Score=39.84 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=24.8
Q ss_pred cccccCCCCCCCcceeccCCCCCChhHHHHHHH
Q 017059 9 IQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERI 41 (378)
Q Consensus 9 ~qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i 41 (378)
++||||| .||.++|+ .|+++++..++++
T Consensus 9 G~s~Rmg--~~K~ll~~---~G~pli~~~~~~l 36 (208)
T 3ngw_A 9 GVGRRIG--MEKTEVML---CGKKLIEWVLEKY 36 (208)
T ss_dssp CCCTTTT--SCGGGCEE---TTEEHHHHHHHHH
T ss_pred CchhhCC--CCCcccEE---CCeeHHHHHHHHh
Confidence 3899999 79999988 7999999888877
No 43
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=84.44 E-value=0.41 Score=42.54 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=20.1
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
.|||||.+.||.++|+ .|+++++..++++.
T Consensus 14 ~g~R~~~~~~K~l~~i---~g~pli~~~l~~l~ 43 (228)
T 2yc3_A 14 QGKRMKMSMPKQYIPL---LGQPIALYSFFTFS 43 (228)
T ss_dssp CC-------CGGGSEE---TTEEHHHHHHHHHH
T ss_pred cccccCCCCCccEeEE---CCEEHHHHHHHHHH
Confidence 8999997789999988 68999999888774
No 44
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=84.06 E-value=0.49 Score=42.35 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=26.4
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+|||||.+.||.++|+ .|+++++..++++.
T Consensus 17 ~g~R~~~~~~K~l~~i---~g~pll~~~i~~l~ 46 (236)
T 1i52_A 17 FGRRMQTECPKQYLSI---GNQTILEHSVHALL 46 (236)
T ss_dssp CCGGGCCSSCGGGSEE---TTEEHHHHHHHHHH
T ss_pred CccccCCCCCcceeeE---CCEEHHHHHHHHHH
Confidence 8999997779999988 59999999888874
No 45
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=81.97 E-value=0.7 Score=39.74 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=61.2
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||| .||.++|+ .|+++++..++++... ++. .++|.|+.. .+.+.+++++ +|
T Consensus 15 ~~~R~g--~~K~l~~~---~g~pll~~~l~~l~~~---------------~~~-~i~vv~~~~-~~~~~~~~~~---~~- 68 (197)
T 2wee_A 15 RSNRLG--TPKQLLPY---RDTTVLGATLDVARQA---------------GFD-QLILTLGGA-ASAVRAAMAL---DG- 68 (197)
T ss_dssp CCTTTS--SCGGGSEE---TTEEHHHHHHHHHHHT---------------TCS-EEEEEECTT-HHHHHHHSCC---TT-
T ss_pred CcccCC--CCeEcCee---CCccHHHHHHHHHHhc---------------CCC-cEEEEeCCC-HHHHHHHhcc---CC-
Confidence 899998 79999988 5899999988877432 111 467777654 4555555543 22
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCC-CchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHHHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDG-NGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~G-hG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~~l 168 (378)
+.++.+ .++ +.| .++++.++..- ..+.+++.+...|.++. ++..+
T Consensus 69 ----~~~~~~-------~~~-------------~~g~~~~i~~al~~~-------~~~~~~vlv~~~D~P~~---~~~~i 114 (197)
T 2wee_A 69 ----TDVVVV-------EDV-------------ERGCAASLRVALARV-------HPRATGIVLMLGDQPQV---APATL 114 (197)
T ss_dssp ----SEEEEC-------C-----------------CCHHHHHHHHTTS-------CTTEEEEEEEETTCTTC---CHHHH
T ss_pred ----CEEEEC-------CCc-------------ccCHHHHHHHHHHHh-------cccCCeEEEEeCCcCCC---CHHHH
Confidence 112111 000 012 24456555321 12568999999999984 55555
Q ss_pred HHHH
Q 017059 169 GYFI 172 (378)
Q Consensus 169 G~~~ 172 (378)
-...
T Consensus 115 ~~l~ 118 (197)
T 2wee_A 115 RRII 118 (197)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 46
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=81.32 E-value=0.57 Score=41.59 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=30.0
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHh
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEG 83 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~ 83 (378)
.|||||.+.||.++|+ .|+++++..++++.+. ..+ -.++|.|+... +.+.+ +.+
T Consensus 16 ~g~R~~~~~~K~l~~~---~gkpli~~~l~~l~~~--------------~~~-~~ivvv~~~~~-~~~~~-~~~ 69 (231)
T 1vgw_A 16 IGVRFGADKPKQYVEI---GSKTVLEHVLGIFERH--------------EAV-DLTVVVVSPED-TFADK-VQT 69 (231)
T ss_dssp ---------CCSCCEE---TTEEHHHHHHHHHHTC--------------TTC-CEEEEECCTTC-STHHH-HHH
T ss_pred ccccCCCCCCceEeEE---CCeEHHHHHHHHHHcC--------------CCC-CeEEEEECccH-HHHHH-HHh
Confidence 8999997679999988 5999999988887421 012 24677776543 35555 554
No 47
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=81.28 E-value=0.87 Score=40.07 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=25.5
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+||||| ..||.++|+ .|+++++..++++.
T Consensus 16 ~s~Rmg-~~~K~ll~i---~G~pli~~~l~~l~ 44 (201)
T 1e5k_A 16 KARRMG-GVDKGLLEL---NGKPLWQHVADALM 44 (201)
T ss_dssp CCSSSC-SSCGGGSEE---TTEEHHHHHHHHHH
T ss_pred CCCcCC-CCCCceeeE---CceeHHHHHHHHHH
Confidence 899998 579999988 58999999988875
No 48
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=81.12 E-value=1.5 Score=38.82 Aligned_cols=166 Identities=18% Similarity=0.205 Sum_probs=88.8
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCCCCC
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGL 89 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~Fgl 89 (378)
.||||| ||.++|+ .|+++++..++++... +. .++|.|.. +.+.++++++ .
T Consensus 12 ~g~R~~---~K~l~~i---~g~pli~~~l~~~~~~----------------~~-~i~v~~~~---~~i~~~~~~~----~ 61 (234)
T 2y6p_A 12 GSTRLK---EKPLKNL---LGKPLIRWVVEGLVKT----------------GE-RVILATDS---ERVKEVVEDL----C 61 (234)
T ss_dssp CCTTTT---TGGGCEE---TTEEHHHHHHHHHHTT----------------TS-CEEEEESC---HHHHHHHTTT----S
T ss_pred CCCCCC---CCcceeE---CCEEHHHHHHHHHHHh----------------CC-EEEEECCh---HHHHHHHHhc----e
Confidence 899998 9999988 5899999998887532 11 35666654 6677777631 1
Q ss_pred CCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCH-HHh
Q 017059 90 ESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADP-TFL 168 (378)
Q Consensus 90 ~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP-~~l 168 (378)
++ +.. . ...+.|.|+++.++.. -+-+++.+.+.|.++....+- .++
T Consensus 62 ---~~--~~~-------~------------~~~~~g~~~~~~~~~~---------~~~~~vlv~~~D~P~~~~~~i~~l~ 108 (234)
T 2y6p_A 62 ---EV--FLT-------P------------SDLPSGSDRVLYVVRD---------LDVDLIINYQGDEPFVYEEDIKLIF 108 (234)
T ss_dssp ---EE--EEC-------C------------TTCCSHHHHHHHHHTT---------CCCSEEEECCTTCCCCCHHHHHHHH
T ss_pred ---EE--EEC-------C------------cccccchHHHHHHHHh---------CCCCEEEEecCCcCcCCHHHHHHHH
Confidence 11 110 0 0124455666654432 145799999999988532111 234
Q ss_pred HHHHhcCCcEEEEEeccc----CCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHH
Q 017059 169 GYFIDKGVSAGAKVVRKA----YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFL 244 (378)
Q Consensus 169 G~~~~~~~~~~~kvv~K~----~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl 244 (378)
-.+...+ +...-+.... .| ..++++. +.+|+ ++++.+-+.... .++ . ...+. .|....+|+.+.+
T Consensus 109 ~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~--~~~g~--v~~~~e~~~~~~--~~~-~-~~~~~-~~~giy~~~~~~l 177 (234)
T 2y6p_A 109 RELEKGE-RVVTLARKDKEAYERP-EDVKVVL--DREGY--ALYFSRSPIPYF--RKN-D-TFYPL-KHVGIYGFRKETL 177 (234)
T ss_dssp HHHHHTC-SEEEEEEECSGGGGCT-TSCEEEE--CTTSB--EEEEESSCCSCC--SSC-C-SSCCE-EEEEEEEEEHHHH
T ss_pred HHHHhCC-CeEEEecCCHHHhcCC-CceEEEE--cCCCC--EeeeecCCCCcc--ccc-c-cceee-EEEEEEEcCHHHH
Confidence 4444455 3322122111 22 2344422 23564 444444221100 010 0 11222 4888899999998
Q ss_pred HHHhh
Q 017059 245 NQVAN 249 (378)
Q Consensus 245 ~~~~~ 249 (378)
.++..
T Consensus 178 ~~~~~ 182 (234)
T 2y6p_A 178 MEFGA 182 (234)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77653
No 49
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=77.41 E-value=1.2 Score=40.71 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=26.8
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHH
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILC 43 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~ 43 (378)
.||||+ .+.||.++|+ .|+++++..++++..
T Consensus 35 ~gtRl~plt~~~pK~l~~i---~gkpli~~~l~~l~~ 68 (254)
T 1jyk_A 35 LGTRLRPLTENTPKALVQV---NQKPLIEYQIEFLKE 68 (254)
T ss_dssp CCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHH
T ss_pred CcccCCcccCCCCCEEeeE---CCEEHHHHHHHHHHH
Confidence 899998 5789999988 589999999888753
No 50
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=77.09 E-value=2.4 Score=39.31 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=39.8
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHh
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEG 83 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~ 83 (378)
.||||+- ..||.++|+ .|+++++..++++... ++. .++|.|... .+.+.+++.+
T Consensus 24 ~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~~---------------g~~-~i~vv~~~~-~~~i~~~~~~ 80 (297)
T 2ux8_A 24 LGTRFLPATKAMPKEMLPV---VDRPLIQYAVDEAVEA---------------GIE-QMIFVTGRG-KSALEDHFDI 80 (297)
T ss_dssp CCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHHT---------------TCC-EEEEEECTT-CHHHHHHTSC
T ss_pred CccccCccccCCCceeeeE---CCeEHHHHHHHHHHhC---------------CCC-EEEEEeCCC-HHHHHHHHhh
Confidence 8999984 679999998 4899999999887531 222 466777654 6778888764
No 51
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=76.84 E-value=1.1 Score=40.40 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=17.3
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAER 40 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~ 40 (378)
+|||||.+ ||.++|+ .|+++++..+++
T Consensus 35 ~s~Rm~~~-~K~l~~i---~gkpli~~~l~~ 61 (236)
T 2px7_A 35 NGLRLGRG-PKAFLQV---GGRTLLEWTLAA 61 (236)
T ss_dssp -------C-CGGGCBC---SSSBHHHHHHHH
T ss_pred CCccCCCC-CCeEEEE---CCEEHHHHHHHh
Confidence 89999976 9999987 699999988876
No 52
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=73.24 E-value=3 Score=37.02 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=18.9
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
.|||||-. ||.++|+ .|+++++..++++.
T Consensus 28 ~g~R~~~~-~K~l~~i---~g~pli~~~l~~l~ 56 (232)
T 2xme_A 28 LGTRLGGV-PKPLVRV---GGCEIILRTMKLLS 56 (232)
T ss_dssp ------CC-CGGGCEE---TTEEHHHHHHHHHG
T ss_pred CcCcCCCC-CcEEeEE---CCEEHHHHHHHHHH
Confidence 89999844 9999988 58999998888763
No 53
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=67.56 E-value=0.73 Score=40.45 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.3
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+||||| .||.++|+ .|+++++..++++.
T Consensus 24 ~g~Rmg--~~K~ll~i---~g~pll~~~l~~l~ 51 (201)
T 2e8b_A 24 KSKRFG--EDKLLYEI---KGKKVIERVYETAK 51 (201)
T ss_dssp SCCCCS--TTHHHHHH---HHHHHHHHHHHHHH
T ss_pred CCccCC--CCcccceE---CceEHHHHHHHHHH
Confidence 899999 79999988 58999998888774
No 54
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=63.44 E-value=3.3 Score=40.38 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=26.2
Q ss_pred ccccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 10 QGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 10 qGtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
+|||||.+.||.++|+ .|+++++..++++.
T Consensus 13 ~ssRmg~~~pK~ll~l---~GkPLi~~~l~~l~ 42 (371)
T 1w55_A 13 NSTRFNTKVKKQFLRL---GNDPLWLYATKNLS 42 (371)
T ss_dssp CCTTTCSSSCGGGCEE---BTEEHHHHHHHHHH
T ss_pred CCccCCCCCCcceEEE---CCeEHHHHHHHHHH
Confidence 8999997779999988 59999999888774
No 55
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=62.02 E-value=4 Score=38.45 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=38.1
Q ss_pred ccccCCC---CCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHH
Q 017059 10 QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 82 (378)
Q Consensus 10 qGtRLG~---~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~ 82 (378)
.||||+- ..||.++|+ .|+++++..++++... ++. .++|.|+.. .+.+.+++.
T Consensus 22 ~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~~---------------gi~-~iivv~~~~-~~~i~~~~~ 77 (323)
T 2pa4_A 22 LGTRFLPATKTVPKELLPV---VDTPGIELIAAEAAEL---------------GAT-RLAIITAPN-KAGVLAHFE 77 (323)
T ss_dssp CCGGGTTGGGTSCGGGCEE---TTEEHHHHHHHHHHHT---------------TCC-EEEEEECTT-CHHHHHTTS
T ss_pred CccccCccccCCCceeeeE---CCEEHHHHHHHHHHhC---------------CCC-EEEEEecCc-HHHHHHHHh
Confidence 8999985 679999998 4899999999887531 222 466777653 466666654
No 56
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=60.92 E-value=1 Score=41.32 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=26.2
Q ss_pred cccccCC---CCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 9 IQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 9 ~qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
++||||+ .+.||-++|+ .||++++..++++.
T Consensus 8 G~GtRl~plt~~~PK~llpv---~gkpli~~~l~~l~ 41 (255)
T 4evw_A 8 GMSSRFFKAGYTQPKYMLEA---HGQTLFEHSVNSFA 41 (255)
T ss_dssp SCCHHHHHTTCCSCGGGCEE---TTEEHHHHHHGGGG
T ss_pred CCCcccccCCCCCCccccEE---CCeEHHHHHHHHHh
Confidence 3899996 4789999998 68999999988774
No 57
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=60.15 E-value=4.1 Score=39.25 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=86.7
Q ss_pred ccccCC---CCCCCcceeccCCCCCChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhcCC
Q 017059 10 QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKY 86 (378)
Q Consensus 10 qGtRLG---~~~pKg~~~i~l~~~ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~~~ 86 (378)
+||||+ ...||.++|+ .|+++++..++++.+. +.. .++|.|+.. +.+++++..
T Consensus 10 ~g~R~~plt~~~~K~ll~i---~g~pli~~~l~~l~~~---------------~~~-~i~vv~~~~----i~~~~~~~~- 65 (401)
T 2ggo_A 10 SGERLEPITHTRPKAFVPI---LSKPLIEYQIEYLRKC---------------GIR-DITVIVSSK----NKEYFEKKL- 65 (401)
T ss_dssp CCGGGTTGGGTSCGGGCEE---TTEEHHHHHHHHHHHT---------------TCC-EEEEEECGG----GHHHHHHHC-
T ss_pred CccccCcccCCCCcceeeE---CCEeHHHHHHHHHHHC---------------CCC-EEEEEeCHH----HHHHhhccC-
Confidence 799997 4679999988 6899999999887532 111 467777665 667776531
Q ss_pred CCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHCCceEEEEEecCCCcccccCHH
Q 017059 87 FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPT 166 (378)
Q Consensus 87 Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~DP~ 166 (378)
..+.+..++ . .|.|-++......+ -+++.+.+.|.++. +|.
T Consensus 66 -----~~i~~~~~~---------------~-----~~~g~~~~l~~~~~-----------~~~~lv~~~D~~~~---~~~ 106 (401)
T 2ggo_A 66 -----KEISIVTQK---------------D-----DIKGTGAAILSAKF-----------NDEALIIYGDLFFS---NEK 106 (401)
T ss_dssp -----TTCEEEECC---------------T-----TCCBSTTTGGGCCC-----------SSEEEEEETTEEES---CSH
T ss_pred -----CcEEEEeCC---------------C-----CCCChHHHHHHhcc-----------CCCEEEEeCccccc---cHH
Confidence 123332221 0 12233322221111 36788999999863 344
Q ss_pred HhHHHHhcCCcEEEEEecccCCCccceeEEEecCCCCeEEEEecCCChhhhhhccCCCCccccccccceeeeEeHHHHHH
Q 017059 167 FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQ 246 (378)
Q Consensus 167 ~lG~~~~~~~~~~~kvv~K~~~~EkvGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~~~l~fl~~ 246 (378)
.+-...+ +.+..+-+.+... ..+-|++... .+|+ +.++.|=|.. + .. ...|++.++++-+.++.
T Consensus 107 ~~~~l~~-~~~~~i~~~~~~~-~~~~~~v~~~-~~g~--v~~~~ek~~~------~---~~--~~~~~Giy~~~~~~~~~ 170 (401)
T 2ggo_A 107 EICNIIT-LKENAIIGVKVSN-PKDYGVLVLD-NQNN--LSKIIEKPEI------P---PS--NLINAGIYKLNSDIFTY 170 (401)
T ss_dssp HHHHHTT-CSSEEEEEEECSC-CSSSCEEEEC-TTSS--EEEEECSCSS------C---SC--SEEEEEEEEEETHHHHH
T ss_pred HHHHHHH-hcCCEEEEEEcCC-CcceeEEEEC-CCCe--EEEEEECCCC------C---CC--cEEEEEEEEEcHHHHHH
Confidence 5544444 3444433333222 2345666543 2453 4445442211 0 01 12466778899887755
Q ss_pred H
Q 017059 247 V 247 (378)
Q Consensus 247 ~ 247 (378)
+
T Consensus 171 l 171 (401)
T 2ggo_A 171 L 171 (401)
T ss_dssp H
T ss_pred h
Confidence 3
No 58
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=53.44 E-value=6.8 Score=34.81 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=23.1
Q ss_pred cccCCCCCCCcceeccCCCCCChhHHHHHHHH
Q 017059 11 GTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 42 (378)
Q Consensus 11 GtRLG~~~pKg~~~i~l~~~ksllql~~e~i~ 42 (378)
|+||| ..||.++|+ .|+++++..++++.
T Consensus 16 ~~r~~-~~~K~l~~i---~g~pll~~~l~~l~ 43 (232)
T 2dpw_A 16 AERFG-VGSKALVPY---RGRPMVEWVLEALY 43 (232)
T ss_dssp GGTTT-CSBGGGSEE---TTEETHHHHHHHHH
T ss_pred ccccC-CCCceeeEE---CCEEHHHHHHHHHH
Confidence 67776 369999988 58999999888874
No 59
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=53.05 E-value=5.7 Score=37.90 Aligned_cols=176 Identities=16% Similarity=0.204 Sum_probs=90.0
Q ss_pred ccccCC----CCCCCcceeccCCCC-CChhHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEecCccchHHHHHHHHhc
Q 017059 10 QGTRLG----SSDPKGCVNIGLPSG-KSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGH 84 (378)
Q Consensus 10 qGtRLG----~~~pKg~~~i~l~~~-ksllql~~e~i~~l~~la~~~~~~~~~~~~~~iPl~IMTS~~T~~~t~~~l~~~ 84 (378)
.||||. ...||-++|+ .| ++++|..++++... .+.. .++|.|.....+.+.+++.+
T Consensus 12 ~GtRl~Pls~~~~pK~ll~l---~G~~pli~~~l~~l~~~--------------~~~~-~iiVvt~~~~~~~i~~~l~~- 72 (337)
T 2cu2_A 12 RGERLWPLSREDRPKPFLPL---FEGKTLLEATLERLAPL--------------VPPE-RTLLAVRRDQEAVARPYADG- 72 (337)
T ss_dssp CCGGGTTTCBTTBCGGGCBC---GGGCBHHHHHHHHHTTT--------------SCGG-GEEEEEEGGGHHHHGGGCSS-
T ss_pred CcccCCccCCCCCCceEEEc---CCCChHHHHHHHHHhCc--------------CCCC-CEEEEcChHHHHHHHHHhcc-
Confidence 899997 4679999987 35 99999999887432 0122 35666654323333332221
Q ss_pred CCCCCCCCcEEEEEcCceeEEecCCcccccCCCccccccCCCch-hhHHhhcCcHHHHHHHCCceEEEEEecCCCccccc
Q 017059 85 KYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGG-VYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVA 163 (378)
Q Consensus 85 ~~Fgl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~-i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~ 163 (378)
+ +. +++ + .|-|.|. +..+. . +... .+-+++.+.+.|.++.
T Consensus 73 ---------~--------~~-------i~e-~-----~~~gta~ai~~a~-~---l~~~--~~~~~~lvl~~D~~~~--- 113 (337)
T 2cu2_A 73 ---------I--------RL-------LLE-P-----LGRDTAGAVLLGV-A---EALK--EGAERLLVLPADHYVG--- 113 (337)
T ss_dssp ---------S--------EE-------EEE-S-----SCCHHHHHHHHHH-H---HHHH--HTCSEEEEEESSCEES---
T ss_pred ---------C--------ce-------Eec-C-----CCCCcHHHHHHHH-H---Hhcc--CCCCEEEEEECCccCC---
Confidence 0 11 111 1 1233333 22222 1 2211 1357899999999983
Q ss_pred CHH----HhHHH---HhcCCcEEEEEecccCCCccceeEEEecC-CCCeEEEEecCCChhh-hhhccCCCCccccccccc
Q 017059 164 DPT----FLGYF---IDKGVSAGAKVVRKAYPQEKVGVFVRRGK-GGPLTVVEYSELDPSL-ASAINQETGRLRFCWSNV 234 (378)
Q Consensus 164 DP~----~lG~~---~~~~~~~~~kvv~K~~~~EkvGvl~~~~~-~g~~~vvEYsel~~~~-~~~~~~~~g~l~f~~gNi 234 (378)
++. .+.-+ +..+..+.+-+.+ +.|...-|.+..... ++...|..+.|=|... +.+.- .+| | .-|.
T Consensus 114 ~~~~~~~~l~~~~~~~~~~~~vt~~i~p-~~~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~-~~g---~-~~n~ 187 (337)
T 2cu2_A 114 DDEAYREALATMLEAAEEGFVVALGLRP-TRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI-RKG---Y-VWNG 187 (337)
T ss_dssp CHHHHHHHHHHHHHHCCTTCEEEEEECC-SSCCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH-HTT---C-EEEE
T ss_pred CHHHHHHHHHHHHHHHHcCCeEEEeecc-CCCCCCceEEEECCcccccCeEEEEEeCCChHHHHHHh-hcC---C-EEEE
Confidence 332 12211 1235555444443 345556787754210 0113566666655422 11111 123 2 2588
Q ss_pred eeeeEeHHHHHHHhh
Q 017059 235 CLHMFTLDFLNQVAN 249 (378)
Q Consensus 235 ~~~~~~l~fl~~~~~ 249 (378)
..++|+.+.+.+.++
T Consensus 188 Giy~f~~~~ll~~l~ 202 (337)
T 2cu2_A 188 GVFAFAPATMAELFR 202 (337)
T ss_dssp EEEEECHHHHHHHHH
T ss_pred EEEEEeHHHHHHHHH
Confidence 899999988844443
No 60
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=24.25 E-value=1e+02 Score=23.77 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=26.9
Q ss_pred cCceeEEecCCcccccCCCccccccCCCchhhHHhhcCcHHHHHHHC
Q 017059 99 QGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR 145 (378)
Q Consensus 99 Q~~~P~~~~~g~~~l~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~ 145 (378)
+.++|.+--+|+.+ |.-+...+|+++|-|..+++.
T Consensus 68 ~~tvP~vfi~g~~i------------gG~d~l~~l~~~G~L~~~l~~ 102 (114)
T 3h8q_A 68 QKTVPNIFVNKVHV------------GGCDQTFQAYQSGLLQKLLQE 102 (114)
T ss_dssp CCSSCEEEETTEEE------------ESHHHHHHHHHHTHHHHHHHS
T ss_pred CCccCEEEECCEEE------------eCHHHHHHHHHCCCHHHHhcC
Confidence 46678877677543 556788889999999999984
Done!