BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017061
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166)
From Thermotoga Maritima At 2.10 A Resolution
Length = 442
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 145/264 (54%), Gaps = 27/264 (10%)
Query: 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
L R++ L+ +LGNPH ++KT+HI GT GKGS A +S+IL ++GY VG Y SPH+ T RE
Sbjct: 35 LERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRE 94
Query: 137 RMNVGRLNRP-VSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDI 195
R+ RLN +S + + ++ ++ +L+E + E + FEV+TAMAF FA+ +VDI
Sbjct: 95 RI---RLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDI 151
Query: 196 AVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLV 255
AV+E GLGG DATN++ S I T+ +H LG ++E IA KSGIIK PLV
Sbjct: 152 AVLEVGLGGRLDATNVVFP---LCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLV 208
Query: 256 LGG---PFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAE 312
G L +E + R ++S M D + L + +R C E
Sbjct: 209 TGERKREALKVMEDVARKKSSRMY-----VIDKDFSVKVKSLKLHENR-FDYC-----GE 257
Query: 313 RDLKLSIELLDVKLCMIGNHQLHN 336
+ D+ L M G HQ+ N
Sbjct: 258 NTFE------DLVLTMNGPHQIEN 275
>pdb|1FGS|A Chain A, Folylpolyglutamate Synthetase From Lactobacillus Casei
Length = 428
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 115/216 (53%), Gaps = 22/216 (10%)
Query: 46 MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
MN+ + Y+ S K+G D R+ L+ LGNP + + +H+ GT
Sbjct: 1 MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
GKGS A ++ +L A G +VG YTSP I ER+ + + P+ AL ++
Sbjct: 48 NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
L+ + + + +T FE +TA+A+ F Q VD+AVIE G+GG D+TN+I+ SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162
Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
+T + +H LG ++ IA K+GIIK G P+V G
Sbjct: 163 LTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTG 198
>pdb|2GCA|A Chain A, Apo Form Of L. Casei Fpgs
Length = 428
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 114/216 (52%), Gaps = 22/216 (10%)
Query: 46 MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
MN+ + Y+ S K+G D R+ L+ LGNP + + +H+ GT
Sbjct: 1 MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
GKGS A ++ +L A G +VG YTSP I ER+ + + P+ AL ++
Sbjct: 48 NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
L+ + + + +T FE +TA+ + F Q VD+AVIE G+GG D+TN+I+ SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162
Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
+T + +H LG ++ IA K+GIIK G P+V G
Sbjct: 163 LTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTG 198
>pdb|1JBV|A Chain A, Fpgs-Amppcp Complex
pdb|1JBW|A Chain A, Fpgs-Amppcp-Folate Complex
Length = 428
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 114/216 (52%), Gaps = 22/216 (10%)
Query: 46 MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
MN+ + Y+ S K+G D R+ L+ LGNP + + +H+ GT
Sbjct: 1 MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
GKGS A ++ +L A G +VG YTSP I ER+ + + P+ AL ++
Sbjct: 48 NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
L+ + + + +T FE +TA+A+ F Q VD+AVIE G+GG D+TN+I+ SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162
Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
+T + +H LG ++ IA +GIIK G P+V G
Sbjct: 163 LTEVALDHQKLLGHTITAIAKHXAGIIKRGIPVVTG 198
>pdb|2GCB|A Chain A, G51sS52T DOUBLE MUTANT OF L. CASEI FPGS
Length = 428
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 114/216 (52%), Gaps = 22/216 (10%)
Query: 46 MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
MN+ + Y+ S K+G D R+ L+ LGNP + + +H+ GT
Sbjct: 1 MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
GK + A ++ +L A G +VG YTSP I ER+ + + P+ AL ++
Sbjct: 48 NGKSTAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
L+ + + + +T FE +TA+ + F Q VD+AVIE G+GG D+TN+I+ SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162
Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
+T++ +H LG ++ IA K+GIIK G P+V G
Sbjct: 163 LTSVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTG 198
>pdb|2GC6|A Chain A, S73a Mutant Of L. Casei Fpgs
Length = 428
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 22/216 (10%)
Query: 46 MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
MN+ + Y+ S K+G D R+ L+ LGNP + + +H+ GT
Sbjct: 1 MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
GKGS A ++ +L A G +VG YT+P I ER+ + + P+ AL ++
Sbjct: 48 NGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
L+ + + + +T FE +TA+ + F Q VD+AVIE G+GG D+TN+I+ SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162
Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
+T + +H LG ++ IA +GIIK G P+V G
Sbjct: 163 LTEVALDHQKLLGHTITAIAKHXAGIIKRGIPVVTG 198
>pdb|2GC5|A Chain A, G51s Mutant Of L. Casei Fpgs
Length = 428
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 112/216 (51%), Gaps = 22/216 (10%)
Query: 46 MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
MN+ + Y+ S K+G D R+ L+ LGNP + + +H+ GT
Sbjct: 1 MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
GK S A ++ +L A G +VG YTSP I ER+ + + P+ AL ++
Sbjct: 48 NGKSSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
L+ + + + +T FE +TA+ + F Q VD+AVIE G+GG D+TN+I+ SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162
Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLG 257
+T + +H LG ++ IA +GIIK G P+V G
Sbjct: 163 LTEVALDHQKLLGHTITAIAKHXAGIIKRGIPVVTG 198
>pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp
pdb|1W7K|A Chain A, E.Coli Folc In Complex With Adp, Without Folate Substrate
Length = 422
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 108/204 (52%), Gaps = 14/204 (6%)
Query: 75 FDLG--RMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIK 132
DLG R++ + RLG +AGT GKG+T L SIL A GY VG Y+SPH+
Sbjct: 28 IDLGLERVSLVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLV 87
Query: 133 TIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNH 192
ER+ V P SA + F +I+ + +T+FE T A LF Q
Sbjct: 88 RYTERVRVQGQELPESAHTAS--FAEIESARGDI------SLTYFEYGTLSALWLFKQAQ 139
Query: 193 VDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252
+D+ ++E GLGG DATNI+ + +V+T+I +HT LG E+I +GI + +
Sbjct: 140 LDVVILEVGLGGRLDATNIVDAD---VAVVTSIALDHTDWLGPDRESIGREXAGIFRSEK 196
Query: 253 PLVLGGPFLPH-IEHILRDEASLM 275
P ++G P +P I + +++ +L+
Sbjct: 197 PAIVGEPEMPSTIADVAQEKGALL 220
>pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92
pdb|3NRS|A Chain A, Crystal Structure Of Ligand-Free Bifunctional
Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM
YERSINIA PESTIS C092
pdb|3PYZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE COMPLEXED WITH AMPPNP AND
MN ION FROM Yersinia Pestis C092
pdb|3QCZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE WITH MN, AMPPNP AND
L-Glutamate Bound
Length = 437
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 98/187 (52%), Gaps = 11/187 (5%)
Query: 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
L R+ ++ +RL K +AGT GKG+T L +IL A G VG Y+SPH+ E
Sbjct: 35 LERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTE 94
Query: 137 RMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIA 196
R+ + + L+ H EA R + +T+FE T A LF Q +D+
Sbjct: 95 RVR-------IQGQELSEAEHSHSFAQIEAGR-GDISLTYFEFGTLSALQLFKQAKLDVV 146
Query: 197 VIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVL 256
++E GLGG DATNI+ S + IT+I +HT LG E+I K+G+ + G+P V+
Sbjct: 147 ILEVGLGGRLDATNIVDSD---VAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVV 203
Query: 257 GGPFLPH 263
G P +P
Sbjct: 204 GEPDMPQ 210
>pdb|2VOR|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
Folylpolyglutamate Synthase Complexed With Adp And
Amppcp
Length = 487
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 105/179 (58%), Gaps = 12/179 (6%)
Query: 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
L R++ LMD LG+P + ++HIAGT GK S A + +++ A G TSPH+++ E
Sbjct: 47 LTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVE 106
Query: 137 RMNVGRLNRPVSAKALNCLFHKIK---GVLDEAIRLENG----CITHFEVLTAMAFALFA 189
R+++ +P+S + +I+ ++D+ + G ++ FEVLTAMAFA FA
Sbjct: 107 RISID--GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFA 164
Query: 190 QNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII 248
VD+AV+E G+GG DATN+I++ +VIT I +H LG + IA K+GII
Sbjct: 165 DAPVDVAVVEVGMGGRWDATNVINAP---VAVITPISIDHVDYLGADIAGIAGEKAGII 220
>pdb|2VOS|A Chain A, Mycobacterium Tuberculosis Folylpolyglutamate Synthase
Complexed With Adp
Length = 487
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 12/179 (6%)
Query: 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
L R++ L D LG+P + ++HIAGT GK S A + +++ A G TSPH+++ E
Sbjct: 47 LTRISALXDLLGSPQRSYPSIHIAGTNGKTSVARXVDALVTALHRRTGRTTSPHLQSPVE 106
Query: 137 RMNVGRLNRPVSAKALNCLFHKIK---GVLDEAIRLENG----CITHFEVLTAMAFALFA 189
R+++ +P+S + +I+ ++D+ + G + FEVLTA AFA FA
Sbjct: 107 RISID--GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAXSKFEVLTAXAFAAFA 164
Query: 190 QNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII 248
VD+AV+E G GG DATN+I++ +VIT I +H LG + IA K+GII
Sbjct: 165 DAPVDVAVVEVGXGGRWDATNVINAP---VAVITPISIDHVDYLGADIAGIAGEKAGII 220
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 66 GAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVH 98
GAGT S+ + NR ++ LG P ++T+H
Sbjct: 118 GAGTSSNMNANEVIANRALEHLGRPRGDYQTIH 150
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 66 GAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVH 98
GAGT S+ + NR ++ LG P ++T+H
Sbjct: 101 GAGTSSNMNANEVIANRALEHLGRPRGDYQTIH 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,987,216
Number of Sequences: 62578
Number of extensions: 397070
Number of successful extensions: 855
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 24
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)