Query 017061
Match_columns 378
No_of_seqs 283 out of 2489
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02913 dihydrofolate synthet 100.0 1.3E-68 2.9E-73 547.7 36.6 344 32-376 13-356 (510)
2 COG0285 FolC Folylpolyglutamat 100.0 1E-66 2.2E-71 516.2 31.5 274 74-377 24-298 (427)
3 PLN02881 tetrahydrofolylpolygl 100.0 3E-58 6.4E-63 466.2 33.3 292 43-377 14-317 (530)
4 TIGR01499 folC folylpolyglutam 100.0 4.5E-57 9.7E-62 451.5 30.6 274 77-377 1-274 (397)
5 KOG2525 Folylpolyglutamate syn 100.0 9.9E-58 2.2E-62 446.3 24.0 297 42-376 18-330 (496)
6 PRK10846 bifunctional folylpol 100.0 3.6E-54 7.8E-59 432.9 33.0 281 45-376 13-293 (416)
7 PRK00139 murE UDP-N-acetylmura 100.0 2.3E-36 5E-41 307.5 22.2 228 87-376 88-317 (460)
8 PRK11929 putative bifunctional 100.0 2.8E-34 6E-39 315.8 22.0 246 77-376 94-346 (958)
9 TIGR01143 murF UDP-N-acetylmur 100.0 2.3E-33 4.9E-38 282.3 19.8 217 87-375 69-292 (417)
10 TIGR01085 murE UDP-N-acetylmur 100.0 6.5E-33 1.4E-37 282.6 21.9 250 77-376 67-326 (464)
11 PRK14093 UDP-N-acetylmuramoyla 100.0 5.1E-33 1.1E-37 284.3 20.0 231 78-376 93-330 (479)
12 TIGR02068 cya_phycin_syn cyano 100.0 2.3E-32 5E-37 295.7 23.2 250 79-376 462-726 (864)
13 PRK01390 murD UDP-N-acetylmura 100.0 1.8E-32 4E-37 279.0 21.0 209 93-376 113-326 (460)
14 PRK14022 UDP-N-acetylmuramoyla 100.0 1.9E-32 4.2E-37 280.2 20.8 230 86-376 102-334 (481)
15 PRK10773 murF UDP-N-acetylmura 100.0 3.1E-32 6.8E-37 276.7 22.0 217 93-376 99-321 (453)
16 COG0771 MurD UDP-N-acetylmuram 100.0 3.8E-32 8.3E-37 270.6 21.0 206 93-376 109-315 (448)
17 PRK01438 murD UDP-N-acetylmura 100.0 3.2E-32 6.9E-37 278.6 20.7 224 86-376 114-339 (480)
18 COG0770 MurF UDP-N-acetylmuram 100.0 1.1E-31 2.3E-36 269.5 20.4 213 92-374 101-320 (451)
19 PRK03803 murD UDP-N-acetylmura 100.0 1.5E-31 3.2E-36 271.4 21.1 205 94-376 108-312 (448)
20 PRK02006 murD UDP-N-acetylmura 100.0 4.7E-31 1E-35 271.2 22.8 235 76-376 103-359 (498)
21 PRK04308 murD UDP-N-acetylmura 100.0 2.4E-31 5.2E-36 269.7 19.7 206 93-376 109-314 (445)
22 PRK03806 murD UDP-N-acetylmura 100.0 3.1E-31 6.7E-36 268.3 19.8 204 93-376 104-307 (438)
23 PRK02705 murD UDP-N-acetylmura 100.0 3.8E-31 8.2E-36 269.2 19.8 211 93-376 108-320 (459)
24 TIGR01087 murD UDP-N-acetylmur 100.0 7.3E-31 1.6E-35 265.2 20.7 200 93-376 101-303 (433)
25 PRK01368 murD UDP-N-acetylmura 100.0 1.2E-30 2.5E-35 264.8 20.0 209 93-376 103-314 (454)
26 PRK11930 putative bifunctional 100.0 9.7E-31 2.1E-35 283.3 19.2 231 78-376 92-325 (822)
27 PRK02472 murD UDP-N-acetylmura 100.0 4.8E-30 1E-34 260.2 20.3 205 93-376 107-314 (447)
28 PRK03369 murD UDP-N-acetylmura 100.0 5.3E-30 1.1E-34 262.5 20.2 204 95-376 118-322 (488)
29 PRK04663 murD UDP-N-acetylmura 100.0 4E-30 8.6E-35 260.3 19.0 201 94-376 108-308 (438)
30 TIGR01081 mpl UDP-N-acetylmura 100.0 5.2E-30 1.1E-34 260.2 19.7 207 95-376 103-317 (448)
31 PRK00421 murC UDP-N-acetylmura 100.0 8E-30 1.7E-34 259.7 20.1 205 94-376 107-318 (461)
32 PRK14106 murD UDP-N-acetylmura 100.0 8E-30 1.7E-34 258.8 20.0 208 94-376 108-318 (450)
33 COG0773 MurC UDP-N-acetylmuram 100.0 7.9E-30 1.7E-34 251.8 18.0 220 77-378 94-320 (459)
34 PRK04690 murD UDP-N-acetylmura 100.0 1.4E-29 3E-34 258.1 19.4 201 94-376 115-317 (468)
35 COG0769 MurE UDP-N-acetylmuram 100.0 3.6E-29 7.7E-34 253.7 22.0 247 80-377 77-329 (475)
36 PRK00141 murD UDP-N-acetylmura 100.0 5E-29 1.1E-33 254.5 21.6 205 95-376 122-328 (473)
37 PRK11929 putative bifunctional 100.0 4.9E-29 1.1E-33 274.3 21.0 221 93-376 602-830 (958)
38 PF08245 Mur_ligase_M: Mur lig 100.0 9.7E-29 2.1E-33 222.0 18.7 181 99-344 1-188 (188)
39 PRK14016 cyanophycin synthetas 100.0 1.4E-28 3E-33 261.8 22.4 248 79-375 463-726 (727)
40 PRK01710 murD UDP-N-acetylmura 100.0 2E-28 4.4E-33 249.1 20.1 202 93-376 116-321 (458)
41 TIGR01082 murC UDP-N-acetylmur 100.0 2E-28 4.4E-33 248.5 19.8 206 94-376 99-312 (448)
42 PRK14573 bifunctional D-alanyl 99.9 2E-26 4.4E-31 249.2 19.3 200 94-376 104-310 (809)
43 PRK00683 murD UDP-N-acetylmura 99.9 1.8E-25 3.8E-30 225.1 16.1 183 93-376 101-284 (418)
44 PRK03815 murD UDP-N-acetylmura 99.9 1.2E-23 2.7E-28 210.1 17.5 177 95-376 90-269 (401)
45 COG1703 ArgK Putative periplas 98.8 5.3E-08 1.2E-12 91.9 10.9 165 80-271 37-211 (323)
46 PF03308 ArgK: ArgK protein; 98.6 3.2E-08 6.9E-13 92.1 5.5 165 80-270 15-188 (266)
47 PRK09435 membrane ATPase/prote 97.4 0.0067 1.5E-07 59.4 15.4 151 81-260 43-205 (332)
48 TIGR00750 lao LAO/AO transport 97.1 0.0062 1.3E-07 58.9 12.2 48 80-127 20-69 (300)
49 PRK13705 plasmid-partitioning 96.9 0.003 6.5E-08 63.3 8.1 99 16-126 29-141 (388)
50 PRK01077 cobyrinic acid a,c-di 96.7 0.026 5.5E-07 57.8 12.9 34 94-127 3-39 (451)
51 PHA02519 plasmid partition pro 96.5 0.015 3.2E-07 58.3 9.8 53 74-126 81-141 (387)
52 PRK13869 plasmid-partitioning 95.9 0.033 7.1E-07 56.2 8.5 100 15-126 37-156 (405)
53 cd03114 ArgK-like The function 95.7 0.061 1.3E-06 46.4 8.4 60 188-258 87-146 (148)
54 TIGR03453 partition_RepA plasm 95.5 0.056 1.2E-06 54.1 8.3 35 92-126 102-139 (387)
55 COG1072 CoaA Panthothenate kin 95.2 0.22 4.7E-06 47.3 10.8 50 79-128 66-120 (283)
56 TIGR01007 eps_fam capsular exo 94.2 0.1 2.2E-06 47.1 5.9 45 79-126 5-52 (204)
57 TIGR03172 probable selenium-de 94.2 0.063 1.4E-06 49.9 4.5 37 96-132 1-37 (232)
58 PRK10416 signal recognition pa 94.2 1.3 2.7E-05 43.3 13.7 35 93-127 113-149 (318)
59 TIGR00064 ftsY signal recognit 93.7 4.3 9.2E-05 38.7 16.2 35 93-127 71-107 (272)
60 TIGR03018 pepcterm_TyrKin exop 93.7 0.22 4.7E-06 45.3 7.0 49 78-126 16-71 (207)
61 COG3367 Uncharacterized conser 93.5 4.1 8.8E-05 39.6 15.4 157 92-279 146-320 (339)
62 PRK11889 flhF flagellar biosyn 93.4 1.3 2.7E-05 44.7 12.2 35 94-128 241-277 (436)
63 COG1763 MobB Molybdopterin-gua 93.2 0.13 2.9E-06 45.0 4.5 37 94-130 2-40 (161)
64 PRK07667 uridine kinase; Provi 93.2 0.24 5.2E-06 44.5 6.4 50 77-129 3-54 (193)
65 COG1797 CobB Cobyrinic acid a, 92.8 2.6 5.7E-05 42.6 13.5 30 96-125 2-34 (451)
66 PRK15453 phosphoribulokinase; 92.5 0.21 4.5E-06 47.8 5.1 35 92-126 3-39 (290)
67 PF00448 SRP54: SRP54-type pro 92.4 4 8.6E-05 36.9 13.2 160 95-283 2-174 (196)
68 cd02040 NifH NifH gene encodes 92.0 0.24 5.1E-06 46.6 4.9 32 95-126 2-35 (270)
69 PRK05703 flhF flagellar biosyn 91.9 4.9 0.00011 40.9 14.5 34 95-128 222-259 (424)
70 PRK00652 lpxK tetraacyldisacch 91.9 0.44 9.6E-06 46.6 6.7 48 80-127 32-86 (325)
71 cd03109 DTBS Dethiobiotin synt 91.6 0.76 1.6E-05 38.8 7.2 30 97-126 3-33 (134)
72 PF03205 MobB: Molybdopterin g 91.5 0.29 6.4E-06 41.8 4.5 32 95-126 1-34 (140)
73 cd01983 Fer4_NifH The Fer4_Nif 91.3 0.33 7.3E-06 37.1 4.4 31 97-127 2-34 (99)
74 PF07755 DUF1611: Protein of u 91.3 2.7 5.9E-05 40.6 11.3 159 93-281 111-291 (301)
75 PRK06278 cobyrinic acid a,c-di 91.3 2.5 5.3E-05 43.6 11.7 27 93-119 237-266 (476)
76 PRK06761 hypothetical protein; 91.0 7 0.00015 37.5 13.8 66 95-164 4-71 (282)
77 PRK13232 nifH nitrogenase redu 91.0 0.33 7.3E-06 45.9 4.8 32 95-126 2-35 (273)
78 PRK13896 cobyrinic acid a,c-di 90.9 1.5 3.3E-05 44.6 9.7 31 96-126 3-36 (433)
79 COG2403 Predicted GTPase [Gene 90.7 0.33 7.3E-06 47.8 4.5 39 93-131 125-166 (449)
80 COG1663 LpxK Tetraacyldisaccha 90.6 0.61 1.3E-05 45.5 6.2 51 78-128 31-85 (336)
81 TIGR03029 EpsG chain length de 90.4 0.73 1.6E-05 43.6 6.6 50 77-126 84-138 (274)
82 COG4240 Predicted kinase [Gene 90.4 0.62 1.3E-05 43.2 5.6 33 94-126 50-85 (300)
83 PHA02518 ParA-like protein; Pr 90.2 0.46 9.9E-06 42.7 4.8 31 96-126 2-35 (211)
84 cd02117 NifH_like This family 90.0 0.48 1E-05 43.1 4.8 31 96-126 2-34 (212)
85 PRK14489 putative bifunctional 90.0 0.51 1.1E-05 47.0 5.3 39 90-128 201-241 (366)
86 COG0132 BioD Dethiobiotin synt 89.9 0.48 1E-05 43.8 4.6 33 94-126 2-37 (223)
87 PRK05439 pantothenate kinase; 89.9 0.93 2E-05 44.1 6.8 41 87-127 78-123 (311)
88 PRK14974 cell division protein 89.8 6.4 0.00014 38.7 12.7 34 94-127 140-175 (336)
89 PRK13235 nifH nitrogenase redu 89.6 0.52 1.1E-05 44.6 4.8 32 95-126 2-35 (274)
90 COG1618 Predicted nucleotide k 89.5 0.73 1.6E-05 40.5 5.1 39 95-133 6-46 (179)
91 COG2894 MinD Septum formation 89.4 0.45 9.8E-06 43.8 4.0 32 95-126 3-37 (272)
92 PRK10037 cell division protein 89.2 0.58 1.3E-05 43.7 4.8 32 95-126 2-36 (250)
93 PF13500 AAA_26: AAA domain; P 89.0 0.6 1.3E-05 41.9 4.6 32 95-126 1-35 (199)
94 PRK06696 uridine kinase; Valid 89.0 1.1 2.3E-05 41.3 6.3 48 78-125 5-55 (223)
95 PRK13230 nitrogenase reductase 88.9 0.62 1.3E-05 44.3 4.8 32 95-126 2-35 (279)
96 TIGR03371 cellulose_yhjQ cellu 88.9 0.64 1.4E-05 42.9 4.9 32 95-126 2-36 (246)
97 cd02029 PRK_like Phosphoribulo 88.8 0.57 1.2E-05 44.5 4.4 32 96-127 1-34 (277)
98 PRK13849 putative crown gall t 88.8 0.65 1.4E-05 43.1 4.8 32 95-126 2-36 (231)
99 cd03116 MobB Molybdenum is an 88.6 0.77 1.7E-05 40.1 4.9 33 95-127 2-36 (159)
100 PRK13185 chlL protochlorophyll 88.5 0.66 1.4E-05 43.7 4.7 32 95-126 3-36 (270)
101 PRK05632 phosphate acetyltrans 88.5 3.6 7.9E-05 44.4 10.9 33 95-127 3-38 (684)
102 cd02032 Bchl_like This family 88.5 0.68 1.5E-05 43.6 4.7 31 96-126 2-34 (267)
103 PRK14494 putative molybdopteri 88.4 0.76 1.7E-05 42.7 4.9 36 94-129 1-38 (229)
104 PF00485 PRK: Phosphoribulokin 88.4 0.57 1.2E-05 42.0 4.0 27 96-122 1-29 (194)
105 TIGR01287 nifH nitrogenase iro 88.3 0.68 1.5E-05 43.8 4.7 31 96-126 2-34 (275)
106 TIGR00176 mobB molybdopterin-g 88.3 0.7 1.5E-05 40.2 4.3 32 96-127 1-34 (155)
107 TIGR01968 minD_bact septum sit 88.2 0.7 1.5E-05 42.9 4.6 32 95-126 2-36 (261)
108 TIGR02016 BchX chlorophyllide 88.2 0.73 1.6E-05 44.4 4.8 31 96-126 2-34 (296)
109 PRK11670 antiporter inner memb 87.9 0.74 1.6E-05 45.9 4.8 33 94-126 107-142 (369)
110 PRK13236 nitrogenase reductase 87.6 0.9 1.9E-05 43.8 5.1 35 92-126 4-40 (296)
111 cd02028 UMPK_like Uridine mono 87.6 0.81 1.8E-05 40.6 4.5 32 96-127 1-34 (179)
112 TIGR03815 CpaE_hom_Actino heli 87.6 1.8 3.9E-05 42.1 7.2 51 76-126 74-128 (322)
113 cd02035 ArsA ArsA ATPase funct 87.6 9.3 0.0002 34.8 11.6 28 101-128 8-35 (217)
114 TIGR00682 lpxK tetraacyldisacc 87.4 1.8 3.9E-05 42.1 7.0 35 93-127 27-65 (311)
115 PRK13234 nifH nitrogenase redu 87.3 0.94 2E-05 43.6 5.0 38 93-130 3-43 (295)
116 cd02033 BchX Chlorophyllide re 87.3 1.1 2.4E-05 43.9 5.5 35 92-126 29-65 (329)
117 COG1936 Predicted nucleotide k 87.2 0.63 1.4E-05 41.2 3.3 26 95-124 1-28 (180)
118 KOG0780 Signal recognition par 86.8 2.8 6E-05 41.8 7.8 34 94-127 101-136 (483)
119 COG0541 Ffh Signal recognition 86.7 8.6 0.00019 39.0 11.3 85 95-200 101-190 (451)
120 TIGR01969 minD_arch cell divis 86.6 1.1 2.3E-05 41.5 4.8 31 96-126 2-35 (251)
121 PRK12374 putative dithiobiotin 86.6 1 2.2E-05 41.6 4.7 31 96-126 4-37 (231)
122 PRK13233 nifH nitrogenase redu 86.6 0.98 2.1E-05 42.7 4.6 32 95-126 3-37 (275)
123 PF09140 MipZ: ATPase MipZ; I 86.5 0.92 2E-05 42.6 4.2 31 96-126 2-35 (261)
124 PRK00784 cobyric acid synthase 86.2 0.87 1.9E-05 47.1 4.4 33 95-127 3-38 (488)
125 PRK00090 bioD dithiobiotin syn 86.2 1 2.2E-05 41.1 4.4 30 97-126 2-34 (222)
126 PF01656 CbiA: CobQ/CobB/MinD/ 86.1 0.89 1.9E-05 40.0 3.9 30 97-126 4-33 (195)
127 COG0003 ArsA Predicted ATPase 85.8 11 0.00024 36.9 11.5 107 95-201 3-134 (322)
128 TIGR00554 panK_bact pantothena 85.7 2.1 4.6E-05 41.2 6.4 40 87-126 54-98 (290)
129 CHL00175 minD septum-site dete 85.2 1.4 3E-05 41.8 5.0 33 94-126 15-50 (281)
130 KOG3022 Predicted ATPase, nucl 85.2 1.2 2.6E-05 42.3 4.3 32 95-126 48-82 (300)
131 PF06564 YhjQ: YhjQ protein; 84.9 1.1 2.3E-05 42.1 3.9 31 96-126 6-36 (243)
132 PRK01906 tetraacyldisaccharide 84.9 2.6 5.6E-05 41.5 6.7 49 79-127 38-93 (338)
133 KOG3347 Predicted nucleotide k 84.8 0.91 2E-05 39.4 3.0 27 90-116 3-31 (176)
134 TIGR00347 bioD dethiobiotin sy 84.7 1.2 2.6E-05 38.6 3.9 24 103-126 9-32 (166)
135 PRK00771 signal recognition pa 84.3 2.5 5.4E-05 43.1 6.5 34 94-127 95-130 (437)
136 COG0489 Mrp ATPases involved i 84.3 1.5 3.3E-05 41.6 4.7 34 93-126 56-92 (265)
137 cd02037 MRP-like MRP (Multiple 84.2 1.4 3.1E-05 38.3 4.2 26 101-126 9-34 (169)
138 TIGR00379 cobB cobyrinic acid 84.1 1.3 2.8E-05 45.4 4.4 31 97-127 2-35 (449)
139 PRK13231 nitrogenase reductase 83.9 0.81 1.7E-05 43.0 2.7 31 95-126 3-35 (264)
140 cd02036 MinD Bacterial cell di 83.9 1.4 3E-05 38.3 4.0 28 99-126 7-34 (179)
141 PRK14495 putative molybdopteri 83.9 1.7 3.7E-05 44.1 5.1 37 94-130 1-39 (452)
142 PRK10818 cell division inhibit 83.8 1.6 3.5E-05 41.0 4.7 32 95-126 3-37 (270)
143 PRK10751 molybdopterin-guanine 83.8 2 4.2E-05 38.2 4.9 35 93-127 5-41 (173)
144 PRK14493 putative bifunctional 83.7 1.7 3.7E-05 41.5 4.8 34 94-128 1-36 (274)
145 COG0552 FtsY Signal recognitio 83.3 1.8 3.8E-05 42.3 4.7 33 93-125 138-172 (340)
146 COG0125 Tmk Thymidylate kinase 83.3 1.3 2.8E-05 40.5 3.7 37 94-130 3-41 (208)
147 TIGR00150 HI0065_YjeE ATPase, 82.8 2.3 4.9E-05 36.1 4.7 53 76-132 4-58 (133)
148 cd01672 TMPK Thymidine monopho 82.8 2.4 5.1E-05 37.3 5.1 34 96-129 2-37 (200)
149 TIGR01425 SRP54_euk signal rec 82.8 2.3 5.1E-05 43.2 5.6 35 94-128 100-136 (429)
150 PLN02422 dephospho-CoA kinase 82.5 37 0.00079 31.6 13.0 25 95-123 2-28 (232)
151 TIGR01281 DPOR_bchL light-inde 82.5 1.4 3E-05 41.5 3.6 26 101-126 9-34 (268)
152 TIGR00313 cobQ cobyric acid sy 82.1 1.4 3.1E-05 45.4 3.8 31 98-128 2-35 (475)
153 PLN02796 D-glycerate 3-kinase 82.0 5.6 0.00012 39.3 7.7 32 95-126 101-134 (347)
154 PF02606 LpxK: Tetraacyldisacc 82.0 3.7 8.1E-05 40.2 6.5 39 91-129 32-74 (326)
155 TIGR02880 cbbX_cfxQ probable R 81.6 3.7 8.1E-05 39.3 6.3 41 81-122 44-88 (284)
156 COG0572 Udk Uridine kinase [Nu 81.4 2.6 5.7E-05 38.8 4.9 32 92-125 6-39 (218)
157 cd02025 PanK Pantothenate kina 81.2 2.1 4.5E-05 39.4 4.2 30 96-125 1-34 (220)
158 PF07015 VirC1: VirC1 protein; 81.2 2.6 5.7E-05 39.1 4.8 32 95-126 2-36 (231)
159 COG1192 Soj ATPases involved i 81.0 2.5 5.4E-05 39.4 4.8 30 97-126 8-38 (259)
160 CHL00072 chlL photochlorophyll 80.6 1.8 3.8E-05 41.6 3.7 30 97-126 3-34 (290)
161 TIGR00041 DTMP_kinase thymidyl 79.8 3.4 7.4E-05 36.6 5.1 32 95-126 4-37 (195)
162 COG0455 flhG Antiactivator of 79.6 12 0.00025 35.6 8.8 39 191-230 111-149 (262)
163 PLN02924 thymidylate kinase 79.5 3.9 8.5E-05 37.7 5.5 36 90-125 12-49 (220)
164 PRK07933 thymidylate kinase; V 79.4 3.4 7.5E-05 37.7 5.0 34 96-129 2-37 (213)
165 PRK12727 flagellar biosynthesi 79.0 46 0.001 35.0 13.5 37 92-128 348-388 (559)
166 PF13207 AAA_17: AAA domain; P 78.8 2.1 4.7E-05 34.6 3.2 27 96-125 1-29 (121)
167 PF02374 ArsA_ATPase: Anion-tr 78.6 3.7 8E-05 39.8 5.2 110 95-204 2-138 (305)
168 TIGR03499 FlhF flagellar biosy 78.6 5.2 0.00011 38.3 6.2 36 93-128 193-232 (282)
169 PRK00889 adenylylsulfate kinas 78.0 4.8 0.0001 35.1 5.4 33 93-125 3-37 (175)
170 COG1419 FlhF Flagellar GTP-bin 78.0 19 0.0004 36.3 9.9 37 93-129 202-242 (407)
171 cd02042 ParA ParA and ParB of 77.8 3.5 7.5E-05 32.5 4.1 30 97-126 5-34 (104)
172 PRK09841 cryptic autophosphory 77.7 5.5 0.00012 43.4 6.8 36 91-126 528-566 (726)
173 cd03115 SRP The signal recogni 76.0 5 0.00011 34.9 4.9 32 96-127 2-35 (173)
174 PRK10867 signal recognition pa 76.0 7.1 0.00015 39.8 6.6 34 94-127 100-136 (433)
175 PRK12377 putative replication 76.0 3.8 8.2E-05 38.5 4.3 36 94-129 101-138 (248)
176 PRK11519 tyrosine kinase; Prov 75.4 7.2 0.00016 42.4 6.9 49 78-126 508-561 (719)
177 cd02034 CooC The accessory pro 75.0 3.9 8.5E-05 33.6 3.7 30 97-126 2-33 (116)
178 PRK10646 ADP-binding protein; 75.0 5.5 0.00012 34.6 4.7 53 75-131 9-63 (153)
179 COG3640 CooC CO dehydrogenase 74.8 3.6 7.8E-05 38.3 3.7 33 96-128 2-37 (255)
180 PRK09270 nucleoside triphospha 74.6 7.8 0.00017 35.6 6.0 32 92-123 31-64 (229)
181 PF01121 CoaE: Dephospho-CoA k 74.5 3.2 6.8E-05 37.0 3.2 25 96-124 2-28 (180)
182 cd03113 CTGs CTP synthetase (C 74.5 9.2 0.0002 35.9 6.3 36 95-130 1-41 (255)
183 PLN03046 D-glycerate 3-kinase; 74.3 9.4 0.0002 38.8 6.8 33 94-126 212-246 (460)
184 cd02019 NK Nucleoside/nucleoti 74.0 5.5 0.00012 29.3 4.0 30 96-127 1-32 (69)
185 PF01583 APS_kinase: Adenylyls 73.8 6.6 0.00014 34.2 5.0 34 95-128 3-38 (156)
186 cd02038 FleN-like FleN is a me 73.6 53 0.0011 27.5 10.7 30 97-126 5-34 (139)
187 TIGR01005 eps_transp_fam exopo 73.4 7.3 0.00016 42.5 6.4 36 91-126 543-581 (754)
188 PF13614 AAA_31: AAA domain; P 72.9 6.1 0.00013 33.5 4.6 32 95-126 1-35 (157)
189 TIGR00959 ffh signal recogniti 72.4 9.6 0.00021 38.8 6.5 33 95-127 100-135 (428)
190 COG0237 CoaE Dephospho-CoA kin 72.4 4.2 9E-05 37.0 3.5 27 94-124 2-30 (201)
191 KOG0781 Signal recognition par 71.4 47 0.001 34.3 10.8 88 93-200 377-474 (587)
192 PRK13973 thymidylate kinase; P 70.9 4.7 0.0001 36.7 3.6 35 95-129 4-40 (213)
193 COG0504 PyrG CTP synthase (UTP 70.7 11 0.00023 38.8 6.2 32 95-126 2-37 (533)
194 PRK14491 putative bifunctional 70.6 7 0.00015 41.6 5.3 38 93-130 9-48 (597)
195 PRK06995 flhF flagellar biosyn 70.2 13 0.00028 38.5 6.9 34 94-127 256-293 (484)
196 PRK13768 GTPase; Provisional 70.2 7 0.00015 36.7 4.7 32 95-126 3-36 (253)
197 PRK12726 flagellar biosynthesi 70.0 8.3 0.00018 38.7 5.3 36 93-128 205-242 (407)
198 PRK00698 tmk thymidylate kinas 69.9 9 0.0002 34.0 5.2 31 95-125 4-36 (205)
199 PRK08233 hypothetical protein; 69.0 4.4 9.6E-05 35.2 2.9 24 94-117 3-28 (182)
200 cd03111 CpaE_like This protein 69.0 6.5 0.00014 31.5 3.7 27 100-126 8-35 (106)
201 cd02023 UMPK Uridine monophosp 68.9 6.6 0.00014 35.0 4.1 29 96-126 1-31 (198)
202 TIGR00455 apsK adenylylsulfate 68.6 11 0.00023 33.2 5.3 34 93-126 17-52 (184)
203 PRK06835 DNA replication prote 68.6 8 0.00017 37.9 4.8 35 95-129 184-220 (329)
204 COG3954 PrkB Phosphoribulokina 67.8 3.4 7.5E-05 37.3 1.9 32 92-123 3-36 (289)
205 TIGR00337 PyrG CTP synthase. C 66.9 14 0.0003 38.5 6.4 36 95-130 2-42 (525)
206 PF06418 CTP_synth_N: CTP synt 66.7 7.1 0.00015 37.0 3.8 32 95-126 2-37 (276)
207 PF13521 AAA_28: AAA domain; P 66.6 5.1 0.00011 34.5 2.8 23 97-123 2-26 (163)
208 PRK12723 flagellar biosynthesi 66.0 16 0.00035 36.7 6.5 34 94-127 174-213 (388)
209 PF03266 NTPase_1: NTPase; In 65.3 12 0.00026 32.8 4.9 42 97-138 2-45 (168)
210 PRK12724 flagellar biosynthesi 64.2 13 0.00027 37.9 5.3 34 94-127 223-259 (432)
211 PRK05380 pyrG CTP synthetase; 63.4 17 0.00037 37.9 6.2 37 94-130 2-43 (533)
212 cd02022 DPCK Dephospho-coenzym 63.2 7.3 0.00016 34.3 3.1 24 96-123 1-26 (179)
213 cd00477 FTHFS Formyltetrahydro 62.6 12 0.00026 38.7 4.9 47 74-125 23-75 (524)
214 COG0769 MurE UDP-N-acetylmuram 61.7 5.5 0.00012 41.1 2.3 97 92-234 62-160 (475)
215 PTZ00451 dephospho-CoA kinase; 61.6 7.7 0.00017 36.4 3.1 20 95-114 2-23 (244)
216 PLN02327 CTP synthase 61.5 19 0.0004 37.8 6.1 32 95-126 2-37 (557)
217 PF05378 Hydant_A_N: Hydantoin 61.2 30 0.00065 30.6 6.7 46 80-132 43-88 (176)
218 PTZ00301 uridine kinase; Provi 61.1 10 0.00022 34.6 3.8 25 94-118 3-29 (210)
219 PRK14734 coaE dephospho-CoA ki 61.1 9.8 0.00021 34.3 3.6 25 95-123 2-28 (200)
220 PRK03846 adenylylsulfate kinas 61.0 18 0.00039 32.4 5.3 34 93-126 23-58 (198)
221 PF13238 AAA_18: AAA domain; P 61.0 8.4 0.00018 31.0 3.0 20 97-116 1-22 (129)
222 COG4088 Predicted nucleotide k 60.0 19 0.0004 33.2 5.1 36 94-129 1-38 (261)
223 cd00550 ArsA_ATPase Oxyanion-t 59.9 14 0.00031 34.6 4.6 108 96-203 2-135 (254)
224 PRK05480 uridine/cytidine kina 58.2 18 0.00039 32.5 4.9 32 93-126 5-38 (209)
225 cd02024 NRK1 Nicotinamide ribo 58.2 7.9 0.00017 34.7 2.5 21 96-116 1-23 (187)
226 smart00053 DYNc Dynamin, GTPas 58.0 19 0.00042 33.6 5.1 39 77-115 8-49 (240)
227 cd02027 APSK Adenosine 5'-phos 57.7 17 0.00038 30.9 4.4 30 96-125 1-32 (149)
228 PRK13886 conjugal transfer pro 57.7 12 0.00026 35.0 3.7 26 101-126 12-37 (241)
229 COG3265 GntK Gluconate kinase 57.4 12 0.00026 32.5 3.3 21 98-119 2-22 (161)
230 PF02223 Thymidylate_kin: Thym 56.8 6.5 0.00014 34.6 1.7 23 103-125 7-29 (186)
231 TIGR00152 dephospho-CoA kinase 56.5 9 0.0002 33.9 2.6 21 96-116 1-23 (188)
232 COG2805 PilT Tfp pilus assembl 56.4 46 0.00099 32.5 7.3 25 95-119 126-153 (353)
233 PRK13976 thymidylate kinase; P 56.3 12 0.00025 34.2 3.3 34 96-129 2-39 (209)
234 PRK14722 flhF flagellar biosyn 56.3 22 0.00047 35.6 5.4 35 94-128 137-175 (374)
235 cd02026 PRK Phosphoribulokinas 56.3 8.4 0.00018 36.7 2.4 27 96-122 1-29 (273)
236 PRK04040 adenylate kinase; Pro 56.0 15 0.00033 32.8 3.9 31 95-126 3-35 (188)
237 PRK13695 putative NTPase; Prov 55.8 19 0.00042 31.3 4.6 29 96-124 2-32 (174)
238 KOG2749 mRNA cleavage and poly 55.4 23 0.00049 35.2 5.2 31 94-124 104-135 (415)
239 PF08433 KTI12: Chromatin asso 55.4 17 0.00038 34.5 4.4 34 94-127 1-36 (270)
240 COG1428 Deoxynucleoside kinase 55.0 12 0.00026 34.3 3.1 24 94-117 4-29 (216)
241 PRK07429 phosphoribulokinase; 54.5 13 0.00028 36.4 3.5 28 93-120 7-36 (327)
242 PRK14730 coaE dephospho-CoA ki 54.4 15 0.00034 32.9 3.7 26 95-123 2-29 (195)
243 PRK14490 putative bifunctional 54.2 18 0.00039 35.9 4.5 35 93-128 4-40 (369)
244 PRK14731 coaE dephospho-CoA ki 54.0 15 0.00031 33.4 3.5 25 95-123 6-32 (208)
245 PRK14723 flhF flagellar biosyn 53.4 35 0.00075 37.4 6.7 35 94-128 185-223 (767)
246 COG0529 CysC Adenylylsulfate k 52.7 54 0.0012 29.5 6.6 32 94-125 23-56 (197)
247 PRK05541 adenylylsulfate kinas 52.7 34 0.00074 29.7 5.6 34 92-125 5-40 (176)
248 PF01268 FTHFS: Formate--tetra 52.5 26 0.00057 36.6 5.4 42 83-125 44-91 (557)
249 COG2804 PulE Type II secretory 52.0 1.4E+02 0.0031 31.0 10.5 46 81-129 248-295 (500)
250 TIGR02475 CobW cobalamin biosy 51.6 34 0.00073 33.7 5.9 31 93-126 3-36 (341)
251 COG0523 Putative GTPases (G3E 51.4 1.3E+02 0.0027 29.6 9.7 161 94-282 1-182 (323)
252 cd01129 PulE-GspE PulE/GspE Th 51.4 95 0.0021 29.3 8.8 31 95-126 81-114 (264)
253 PRK06547 hypothetical protein; 51.2 27 0.0006 30.7 4.7 24 93-116 14-39 (172)
254 PLN02348 phosphoribulokinase 50.9 24 0.00053 35.4 4.8 27 93-119 48-76 (395)
255 COG0802 Predicted ATPase or ki 50.0 30 0.00065 29.9 4.6 52 75-130 6-59 (149)
256 TIGR00073 hypB hydrogenase acc 49.8 42 0.00091 30.1 5.9 34 92-126 20-55 (207)
257 PRK05986 cob(I)alamin adenolsy 49.7 25 0.00054 31.7 4.2 31 95-125 23-55 (191)
258 PRK10436 hypothetical protein; 49.6 87 0.0019 32.3 8.7 34 95-129 219-255 (462)
259 TIGR00708 cobA cob(I)alamin ad 48.9 29 0.00062 30.8 4.4 31 95-125 6-38 (173)
260 COG3172 NadR Predicted ATPase/ 48.6 17 0.00038 32.0 2.9 25 94-118 8-34 (187)
261 PRK13506 formate--tetrahydrofo 48.3 31 0.00067 36.2 5.1 46 74-124 39-90 (578)
262 TIGR03574 selen_PSTK L-seryl-t 47.9 26 0.00057 32.4 4.3 30 97-126 2-33 (249)
263 TIGR03600 phage_DnaB phage rep 47.6 65 0.0014 32.5 7.4 49 75-127 179-230 (421)
264 PTZ00386 formyl tetrahydrofola 47.6 42 0.0009 35.5 5.9 47 74-125 53-106 (625)
265 PRK03333 coaE dephospho-CoA ki 47.3 20 0.00044 36.0 3.6 25 95-123 2-28 (395)
266 TIGR01360 aden_kin_iso1 adenyl 47.2 22 0.00048 30.9 3.5 24 93-116 2-27 (188)
267 PRK13505 formate--tetrahydrofo 46.9 32 0.00069 36.1 5.0 34 93-126 54-93 (557)
268 PRK06217 hypothetical protein; 46.9 19 0.00041 31.7 3.1 21 96-116 3-25 (183)
269 PF00142 Fer4_NifH: 4Fe-4S iro 46.6 25 0.00053 33.5 3.8 174 97-282 3-208 (273)
270 PF13604 AAA_30: AAA domain; P 45.7 38 0.00082 30.3 4.9 32 95-126 19-52 (196)
271 PRK13507 formate--tetrahydrofo 45.4 32 0.0007 36.0 4.7 48 74-125 47-100 (587)
272 PF08303 tRNA_lig_kinase: tRNA 45.4 51 0.0011 29.1 5.4 19 103-121 10-28 (168)
273 PF02492 cobW: CobW/HypB/UreG, 45.1 31 0.00068 30.2 4.1 31 95-126 1-33 (178)
274 PRK14733 coaE dephospho-CoA ki 44.9 21 0.00045 32.6 3.0 26 95-123 7-34 (204)
275 PRK06851 hypothetical protein; 44.9 37 0.0008 33.9 5.0 33 94-126 30-64 (367)
276 PRK07414 cob(I)yrinic acid a,c 44.9 43 0.00092 29.9 4.9 32 95-126 22-55 (178)
277 COG1484 DnaC DNA replication p 44.4 49 0.0011 31.1 5.5 38 93-130 104-143 (254)
278 PRK00081 coaE dephospho-CoA ki 44.3 22 0.00048 31.8 3.1 25 95-123 3-29 (194)
279 cd00561 CobA_CobO_BtuR ATP:cor 44.0 39 0.00085 29.5 4.5 30 96-125 4-35 (159)
280 smart00178 SAR Sar1p-like memb 43.9 38 0.00082 29.6 4.5 34 79-113 3-38 (184)
281 PRK01184 hypothetical protein; 43.8 28 0.00061 30.4 3.7 25 95-123 2-28 (184)
282 PLN02974 adenosylmethionine-8- 43.7 37 0.0008 37.6 5.2 35 92-126 25-62 (817)
283 PLN02759 Formate--tetrahydrofo 43.6 43 0.00093 35.5 5.3 47 74-125 54-107 (637)
284 COG0378 HypB Ni2+-binding GTPa 43.2 1.6E+02 0.0034 26.9 8.2 33 94-127 13-47 (202)
285 TIGR03709 PPK2_rel_1 polyphosp 43.1 1E+02 0.0022 29.3 7.4 34 96-129 58-93 (264)
286 PF00580 UvrD-helicase: UvrD/R 42.6 18 0.0004 34.0 2.4 29 91-120 13-42 (315)
287 PRK08181 transposase; Validate 42.5 24 0.00053 33.5 3.2 31 97-127 109-141 (269)
288 cd02072 Glm_B12_BD B12 binding 42.4 1.5E+02 0.0032 24.9 7.6 43 96-155 3-45 (128)
289 COG1125 OpuBA ABC-type proline 42.4 26 0.00056 33.4 3.2 44 94-154 27-72 (309)
290 TIGR03707 PPK2_P_aer polyphosp 42.0 42 0.00092 31.2 4.6 49 77-129 18-68 (230)
291 PRK14709 hypothetical protein; 41.9 49 0.0011 34.1 5.5 43 77-119 184-232 (469)
292 COG4615 PvdE ABC-type sideroph 41.9 22 0.00049 35.9 2.9 46 93-155 348-395 (546)
293 PRK06756 flavodoxin; Provision 41.8 2.1E+02 0.0045 24.0 9.2 46 79-124 68-118 (148)
294 PRK06731 flhF flagellar biosyn 41.8 50 0.0011 31.4 5.2 35 94-128 75-111 (270)
295 TIGR00235 udk uridine kinase. 41.7 28 0.00061 31.2 3.4 26 93-118 5-32 (207)
296 PRK14721 flhF flagellar biosyn 41.4 79 0.0017 32.2 6.8 36 93-128 190-229 (420)
297 PRK10463 hydrogenase nickel in 41.1 79 0.0017 30.5 6.4 34 92-126 102-137 (290)
298 TIGR01650 PD_CobS cobaltochela 41.0 47 0.001 32.6 4.9 47 73-123 47-95 (327)
299 KOG3308 Uncharacterized protei 40.9 22 0.00047 32.5 2.4 26 94-119 4-31 (225)
300 PF03215 Rad17: Rad17 cell cyc 40.7 71 0.0015 33.5 6.5 51 77-130 28-80 (519)
301 PRK14732 coaE dephospho-CoA ki 40.7 22 0.00048 32.0 2.5 24 96-123 1-26 (196)
302 PF02572 CobA_CobO_BtuR: ATP:c 40.5 41 0.00089 29.8 4.1 31 96-126 5-37 (172)
303 PF02367 UPF0079: Uncharacteri 40.1 17 0.00037 30.3 1.6 36 92-131 13-50 (123)
304 TIGR01613 primase_Cterm phage/ 40.0 54 0.0012 31.5 5.2 20 100-119 84-103 (304)
305 TIGR01501 MthylAspMutase methy 39.9 1.7E+02 0.0036 24.8 7.6 43 96-155 5-47 (134)
306 PRK11860 bifunctional 3-phosph 39.5 39 0.00085 36.4 4.6 39 78-116 425-466 (661)
307 cd02020 CMPK Cytidine monophos 39.5 28 0.0006 28.8 2.8 21 96-116 1-23 (147)
308 PRK08118 topology modulation p 39.4 34 0.00073 29.8 3.4 23 95-117 2-26 (167)
309 cd02067 B12-binding B12 bindin 39.4 1.8E+02 0.0038 23.4 7.6 27 98-124 5-31 (119)
310 cd01120 RecA-like_NTPases RecA 39.3 51 0.0011 27.3 4.5 30 97-126 2-33 (165)
311 COG0857 Pta BioD-like N-termin 39.1 2.5E+02 0.0054 27.9 9.7 27 101-127 12-38 (354)
312 KOG1805 DNA replication helica 38.9 49 0.0011 37.0 5.0 29 96-125 690-718 (1100)
313 PRK13975 thymidylate kinase; P 38.9 32 0.0007 30.3 3.3 24 95-118 3-28 (196)
314 PRK08356 hypothetical protein; 38.6 43 0.00092 29.8 4.0 31 95-129 6-38 (195)
315 PRK13764 ATPase; Provisional 38.6 58 0.0013 34.7 5.5 35 95-129 258-294 (602)
316 TIGR00640 acid_CoA_mut_C methy 38.4 1.8E+02 0.0039 24.4 7.6 29 96-124 6-34 (132)
317 cd00009 AAA The AAA+ (ATPases 37.9 1.2E+02 0.0026 24.0 6.5 32 94-125 19-52 (151)
318 PRK04296 thymidine kinase; Pro 37.9 56 0.0012 29.0 4.7 33 95-127 3-37 (190)
319 PRK06762 hypothetical protein; 37.8 35 0.00076 29.2 3.3 22 95-116 3-26 (166)
320 COG1348 NifH Nitrogenase subun 37.2 28 0.0006 32.6 2.6 31 96-126 3-35 (278)
321 PRK13974 thymidylate kinase; P 37.0 36 0.00078 30.8 3.3 27 95-121 4-32 (212)
322 PF07693 KAP_NTPase: KAP famil 36.8 78 0.0017 30.2 5.9 39 81-119 6-47 (325)
323 PF07931 CPT: Chloramphenicol 36.8 27 0.00058 31.0 2.3 24 95-118 2-27 (174)
324 COG1855 ATPase (PilT family) [ 36.5 60 0.0013 33.4 4.9 46 82-130 254-301 (604)
325 PLN02674 adenylate kinase 36.5 79 0.0017 29.6 5.6 40 77-116 14-55 (244)
326 cd03110 Fer4_NifH_child This p 35.9 44 0.00095 29.0 3.6 26 97-126 2-30 (179)
327 PF03976 PPK2: Polyphosphate k 35.9 19 0.00041 33.4 1.3 49 77-129 18-68 (228)
328 cd03243 ABC_MutS_homologs The 35.8 49 0.0011 29.6 4.0 27 95-121 30-60 (202)
329 KOG3220 Similar to bacterial d 35.8 42 0.0009 30.7 3.4 25 95-123 2-28 (225)
330 COG4133 CcmA ABC-type transpor 35.7 36 0.00078 30.9 2.9 31 93-123 27-59 (209)
331 PF05673 DUF815: Protein of un 35.7 72 0.0016 30.0 5.1 28 97-124 55-84 (249)
332 COG2109 BtuR ATP:corrinoid ade 35.3 62 0.0013 29.2 4.4 32 95-126 29-62 (198)
333 KOG2387 CTP synthase (UTP-ammo 35.0 68 0.0015 32.8 5.0 32 95-126 2-37 (585)
334 COG0124 HisS Histidyl-tRNA syn 34.9 2.5E+02 0.0055 28.6 9.2 53 74-126 313-368 (429)
335 TIGR00665 DnaB replicative DNA 34.8 1.3E+02 0.0028 30.4 7.3 48 75-126 180-230 (434)
336 PRK12338 hypothetical protein; 34.8 39 0.00085 33.0 3.3 22 95-116 5-28 (319)
337 TIGR02173 cyt_kin_arch cytidyl 34.8 37 0.00081 28.9 2.9 24 96-122 2-27 (171)
338 TIGR03549 conserved hypothetic 34.4 39 0.00084 36.5 3.5 43 76-118 161-220 (718)
339 KOG2004 Mitochondrial ATP-depe 34.1 92 0.002 33.9 6.0 29 91-119 435-465 (906)
340 PRK04182 cytidylate kinase; Pr 34.0 38 0.00083 29.1 2.9 21 96-116 2-24 (180)
341 PRK10787 DNA-binding ATP-depen 33.7 1.2E+02 0.0025 33.6 7.1 28 92-119 347-376 (784)
342 COG1341 Predicted GTPase or GT 33.4 70 0.0015 32.2 4.9 33 94-126 73-107 (398)
343 TIGR02322 phosphon_PhnN phosph 32.8 43 0.00093 29.0 3.0 25 95-119 2-28 (179)
344 PRK14530 adenylate kinase; Pro 32.8 46 0.001 30.0 3.3 22 95-116 4-27 (215)
345 PRK05537 bifunctional sulfate 32.8 1.3E+02 0.0029 31.8 7.2 53 74-126 371-427 (568)
346 COG1105 FruK Fructose-1-phosph 32.8 3.7E+02 0.008 26.2 9.6 77 80-163 42-127 (310)
347 COG5623 CLP1 Predicted GTPase 32.6 82 0.0018 30.8 4.9 31 94-124 99-131 (424)
348 PRK08154 anaerobic benzoate ca 32.4 93 0.002 30.0 5.5 28 93-123 132-161 (309)
349 COG4555 NatA ABC-type Na+ tran 32.3 42 0.00092 30.9 2.9 39 80-118 14-54 (245)
350 COG1492 CobQ Cobyric acid synt 32.3 54 0.0012 33.9 3.9 57 97-156 4-63 (486)
351 PRK13947 shikimate kinase; Pro 32.2 50 0.0011 28.3 3.3 25 96-123 3-29 (171)
352 cd01131 PilT Pilus retraction 32.0 70 0.0015 28.6 4.3 32 96-127 3-37 (198)
353 TIGR03708 poly_P_AMP_trns poly 31.6 85 0.0018 32.6 5.3 81 77-161 26-134 (493)
354 COG2759 MIS1 Formyltetrahydrof 31.5 40 0.00087 34.5 2.8 47 74-125 37-89 (554)
355 PHA00729 NTP-binding motif con 31.4 1.5E+02 0.0032 27.5 6.4 35 81-117 6-42 (226)
356 PF03029 ATP_bind_1: Conserved 31.3 40 0.00088 31.3 2.7 24 103-126 7-30 (238)
357 COG4096 HsdR Type I site-speci 31.3 84 0.0018 34.6 5.3 45 75-120 169-213 (875)
358 PRK09361 radB DNA repair and r 31.0 1.4E+02 0.0029 27.0 6.2 35 93-127 22-58 (225)
359 COG1255 Uncharacterized protei 31.0 41 0.00089 27.9 2.3 81 195-282 15-101 (129)
360 COG0466 Lon ATP-dependent Lon 30.9 1E+02 0.0023 33.4 5.9 29 91-119 347-377 (782)
361 TIGR02012 tigrfam_recA protein 30.4 2E+02 0.0043 28.1 7.4 51 78-130 41-93 (321)
362 PRK07078 hypothetical protein; 30.4 82 0.0018 34.6 5.2 20 100-119 499-518 (759)
363 PRK08116 hypothetical protein; 30.4 1.2E+02 0.0026 28.6 5.9 31 96-126 116-148 (268)
364 COG1102 Cmk Cytidylate kinase 30.3 51 0.0011 29.1 2.9 25 96-123 2-28 (179)
365 COG5271 MDN1 AAA ATPase contai 30.2 81 0.0018 38.3 5.1 66 20-118 425-490 (4600)
366 PF01935 DUF87: Domain of unkn 30.2 76 0.0016 28.7 4.3 31 95-126 27-58 (229)
367 KOG0635 Adenosine 5'-phosphosu 30.1 3.8E+02 0.0083 23.6 11.0 31 93-123 30-62 (207)
368 PRK00023 cmk cytidylate kinase 30.1 54 0.0012 30.1 3.3 22 95-116 5-28 (225)
369 PRK10586 putative oxidoreducta 29.8 3.5E+02 0.0075 26.8 9.2 46 76-125 21-66 (362)
370 PRK06851 hypothetical protein; 29.5 1.4E+02 0.0031 29.8 6.3 36 95-130 215-252 (367)
371 PF01695 IstB_IS21: IstB-like 29.3 63 0.0014 28.5 3.5 37 94-130 47-85 (178)
372 PRK05800 cobU adenosylcobinami 29.3 2E+02 0.0042 25.2 6.6 19 96-114 3-23 (170)
373 PRK11448 hsdR type I restricti 29.1 85 0.0018 36.2 5.2 53 76-129 418-471 (1123)
374 PRK08760 replicative DNA helic 29.1 2.1E+02 0.0045 29.6 7.7 47 76-126 215-264 (476)
375 TIGR02538 type_IV_pilB type IV 29.0 4.2E+02 0.009 28.0 10.1 34 95-129 317-353 (564)
376 TIGR01420 pilT_fam pilus retra 29.0 87 0.0019 30.7 4.7 32 95-126 123-157 (343)
377 cd08187 BDH Butanol dehydrogen 28.9 4.4E+02 0.0096 26.1 9.9 45 77-126 17-63 (382)
378 TIGR03420 DnaA_homol_Hda DnaA 28.9 1.8E+02 0.004 25.9 6.7 42 77-123 26-69 (226)
379 PRK07952 DNA replication prote 28.5 1.1E+02 0.0025 28.5 5.2 33 95-127 100-134 (244)
380 KOG1145 Mitochondrial translat 28.5 1.2E+02 0.0025 32.1 5.5 23 92-114 151-175 (683)
381 KOG2743 Cobalamin synthesis pr 28.0 3.4E+02 0.0074 26.6 8.2 35 89-126 52-89 (391)
382 KOG2825 Putative arsenite-tran 27.9 71 0.0015 30.4 3.6 38 91-128 16-55 (323)
383 PRK05636 replicative DNA helic 27.8 2.4E+02 0.0052 29.4 7.9 33 94-126 265-300 (505)
384 TIGR00602 rad24 checkpoint pro 27.5 1.1E+02 0.0023 33.0 5.3 42 77-118 93-136 (637)
385 PF12780 AAA_8: P-loop contain 27.4 46 0.001 31.6 2.4 42 78-123 18-59 (268)
386 PRK00300 gmk guanylate kinase; 27.4 60 0.0013 28.7 3.1 25 93-117 4-30 (205)
387 PRK02261 methylaspartate mutas 27.3 3.5E+02 0.0076 22.7 7.6 42 97-155 8-49 (137)
388 cd00544 CobU Adenosylcobinamid 27.3 4.2E+02 0.0091 23.1 8.6 27 97-126 2-30 (169)
389 KOG3062 RNA polymerase II elon 27.2 1.1E+02 0.0024 28.7 4.6 33 94-126 1-36 (281)
390 cd01394 radB RadB. The archaea 26.9 1.7E+02 0.0037 26.2 6.0 33 95-127 20-54 (218)
391 PRK06904 replicative DNA helic 26.9 3.4E+02 0.0074 28.0 8.8 47 76-126 207-256 (472)
392 PF06309 Torsin: Torsin; Inte 26.9 1.9E+02 0.0041 24.3 5.7 45 78-122 35-83 (127)
393 COG1084 Predicted GTPase [Gene 26.7 1.1E+02 0.0024 30.1 4.8 26 90-115 164-191 (346)
394 PRK00131 aroK shikimate kinase 26.7 79 0.0017 26.8 3.6 23 94-116 4-28 (175)
395 COG2019 AdkA Archaeal adenylat 26.6 64 0.0014 28.7 2.9 23 94-116 4-28 (189)
396 PRK09860 putative alcohol dehy 26.6 5.8E+02 0.013 25.4 10.2 48 76-127 18-66 (383)
397 PF09707 Cas_Cas2CT1978: CRISP 26.4 29 0.00063 27.1 0.7 27 12-38 5-31 (86)
398 PRK03839 putative kinase; Prov 26.2 71 0.0015 27.8 3.3 21 96-116 2-24 (180)
399 COG1110 Reverse gyrase [DNA re 26.1 2E+02 0.0043 32.8 7.0 33 92-125 98-130 (1187)
400 KOG1970 Checkpoint RAD17-RFC c 26.1 1.2E+02 0.0025 32.1 5.1 50 77-129 91-144 (634)
401 PRK07261 topology modulation p 26.1 70 0.0015 27.8 3.2 21 96-116 2-24 (171)
402 cd02071 MM_CoA_mut_B12_BD meth 25.9 2.1E+02 0.0045 23.3 5.9 17 109-125 16-32 (122)
403 cd01124 KaiC KaiC is a circadi 25.9 1.1E+02 0.0025 26.3 4.5 31 97-127 2-34 (187)
404 cd01122 GP4d_helicase GP4d_hel 25.9 1.1E+02 0.0023 28.5 4.6 33 95-127 31-66 (271)
405 KOG0991 Replication factor C, 25.8 1.2E+02 0.0027 28.6 4.7 47 78-125 33-81 (333)
406 PRK08006 replicative DNA helic 25.8 7.5E+02 0.016 25.5 12.2 32 95-126 225-259 (471)
407 PF05729 NACHT: NACHT domain 25.8 92 0.002 25.9 3.8 27 95-121 1-29 (166)
408 PHA02575 1 deoxynucleoside mon 25.7 64 0.0014 29.9 2.9 18 96-113 2-21 (227)
409 cd00983 recA RecA is a bacter 25.7 2.6E+02 0.0057 27.4 7.3 52 77-130 40-93 (325)
410 PRK09183 transposase/IS protei 25.7 95 0.0021 29.2 4.2 32 95-126 103-136 (259)
411 COG3378 Phage associated DNA p 25.6 1.1E+02 0.0024 32.1 4.9 19 101-119 239-257 (517)
412 cd08171 GlyDH-like2 Glycerol d 25.4 4.3E+02 0.0093 25.7 9.0 45 77-126 11-55 (345)
413 TIGR02524 dot_icm_DotB Dot/Icm 25.4 1.5E+02 0.0031 29.5 5.6 23 95-117 135-159 (358)
414 PRK13949 shikimate kinase; Pro 25.4 74 0.0016 27.7 3.2 22 96-117 3-26 (169)
415 CHL00181 cbbX CbbX; Provisiona 25.4 1.7E+02 0.0036 28.0 5.9 38 84-121 48-88 (287)
416 PRK14528 adenylate kinase; Pro 25.3 80 0.0017 27.9 3.4 22 95-116 2-25 (186)
417 TIGR00017 cmk cytidylate kinas 25.3 75 0.0016 29.1 3.3 22 95-116 3-26 (217)
418 PRK08506 replicative DNA helic 25.2 2.5E+02 0.0055 28.9 7.5 47 76-126 178-226 (472)
419 cd08185 Fe-ADH1 Iron-containin 25.2 5.2E+02 0.011 25.5 9.6 46 76-126 13-60 (380)
420 PLN02318 phosphoribulokinase/u 25.2 74 0.0016 34.0 3.6 24 93-116 64-89 (656)
421 PRK12339 2-phosphoglycerate ki 25.2 72 0.0016 28.7 3.2 22 95-116 4-27 (197)
422 TIGR02881 spore_V_K stage V sp 25.1 1E+02 0.0023 28.7 4.4 29 93-121 41-71 (261)
423 cd08192 Fe-ADH7 Iron-containin 25.1 4.3E+02 0.0093 26.0 9.0 47 76-126 11-58 (370)
424 PRK09518 bifunctional cytidyla 25.1 64 0.0014 35.1 3.3 22 95-116 2-25 (712)
425 PHA02542 41 41 helicase; Provi 25.0 2.2E+02 0.0047 29.5 6.9 32 95-126 191-224 (473)
426 PRK14527 adenylate kinase; Pro 24.9 78 0.0017 27.9 3.3 24 93-116 5-30 (191)
427 smart00382 AAA ATPases associa 24.9 88 0.0019 24.5 3.4 29 95-123 3-33 (148)
428 PF00437 T2SE: Type II/IV secr 24.8 67 0.0014 30.0 3.0 45 78-125 114-160 (270)
429 PF03796 DnaB_C: DnaB-like hel 24.8 1.4E+02 0.0031 27.6 5.3 48 76-127 5-55 (259)
430 PLN02723 3-mercaptopyruvate su 24.8 2.3E+02 0.0049 27.5 6.8 47 76-126 253-300 (320)
431 PF00931 NB-ARC: NB-ARC domain 24.7 1E+02 0.0023 28.6 4.3 38 80-117 5-44 (287)
432 PRK08903 DnaA regulatory inact 24.7 2.5E+02 0.0053 25.3 6.7 32 95-126 43-76 (227)
433 COG0283 Cmk Cytidylate kinase 24.3 52 0.0011 30.4 2.0 30 95-124 5-36 (222)
434 PRK05595 replicative DNA helic 24.3 2.8E+02 0.0062 28.2 7.7 48 75-126 186-236 (444)
435 PRK05748 replicative DNA helic 24.0 2.8E+02 0.006 28.2 7.5 49 75-127 188-239 (448)
436 cd08190 HOT Hydroxyacid-oxoaci 24.0 4.9E+02 0.011 26.2 9.2 48 76-127 10-58 (414)
437 PRK08533 flagellar accessory p 24.0 2.1E+02 0.0046 26.2 6.1 31 95-126 25-58 (230)
438 PRK07179 hypothetical protein; 23.8 7.1E+02 0.015 24.5 10.4 83 80-165 315-398 (407)
439 PRK11921 metallo-beta-lactamas 23.8 4.9E+02 0.011 25.9 9.2 48 77-124 316-364 (394)
440 KOG0447 Dynamin-like GTP bindi 23.7 76 0.0016 33.4 3.2 25 91-115 305-331 (980)
441 PF10662 PduV-EutP: Ethanolami 23.5 4.7E+02 0.01 22.4 11.1 38 189-228 60-102 (143)
442 cd08193 HVD 5-hydroxyvalerate 23.4 6.2E+02 0.014 24.9 9.8 47 76-126 13-60 (376)
443 PF00005 ABC_tran: ABC transpo 23.4 61 0.0013 26.5 2.2 23 95-117 12-36 (137)
444 PF12846 AAA_10: AAA-like doma 23.3 1.2E+02 0.0026 28.1 4.4 30 97-126 4-35 (304)
445 TIGR01463 mtaA_cmuA methyltran 23.3 6.8E+02 0.015 24.1 10.0 58 187-249 250-307 (340)
446 TIGR03708 poly_P_AMP_trns poly 23.2 3E+02 0.0066 28.6 7.6 69 93-161 297-393 (493)
447 cd02021 GntK Gluconate kinase 23.0 67 0.0015 26.8 2.4 20 97-116 2-23 (150)
448 PRK06067 flagellar accessory p 23.0 2E+02 0.0044 26.1 5.8 38 88-127 21-60 (234)
449 TIGR01359 UMP_CMP_kin_fam UMP- 23.0 72 0.0016 27.6 2.7 21 96-116 1-23 (183)
450 PRK13507 formate--tetrahydrofo 22.9 4.1E+02 0.009 28.1 8.4 31 193-223 314-350 (587)
451 PRK08099 bifunctional DNA-bind 22.9 82 0.0018 31.8 3.3 36 81-116 204-243 (399)
452 PF03686 UPF0146: Uncharacteri 22.7 2.3E+02 0.0049 23.9 5.3 87 190-282 11-101 (127)
453 PF06048 DUF927: Domain of unk 22.7 1E+02 0.0022 29.5 3.8 35 80-117 182-218 (286)
454 PRK14189 bifunctional 5,10-met 22.6 2.9E+02 0.0063 26.5 6.9 53 191-249 200-256 (285)
455 PF08497 Radical_SAM_N: Radica 22.6 82 0.0018 30.3 3.0 48 82-131 7-57 (302)
456 PRK03731 aroL shikimate kinase 22.6 93 0.002 26.6 3.3 21 96-116 4-26 (171)
457 PRK08939 primosomal protein Dn 22.3 2.4E+02 0.0052 27.2 6.4 36 94-129 156-193 (306)
458 PRK06703 flavodoxin; Provision 22.1 4.7E+02 0.01 21.8 9.6 46 78-123 66-116 (151)
459 cd02070 corrinoid_protein_B12- 22.1 5.7E+02 0.012 22.8 9.2 30 109-155 99-128 (201)
460 PRK13477 bifunctional pantoate 22.0 85 0.0019 32.8 3.3 24 93-116 283-308 (512)
461 cd00227 CPT Chloramphenicol (C 21.6 1.1E+02 0.0024 26.5 3.5 23 95-117 3-27 (175)
462 PRK13946 shikimate kinase; Pro 21.6 1E+02 0.0022 27.1 3.3 25 95-122 11-37 (184)
463 TIGR02237 recomb_radB DNA repa 21.4 2.6E+02 0.0056 24.7 6.0 33 95-127 13-47 (209)
464 TIGR02768 TraA_Ti Ti-type conj 21.4 1.3E+02 0.0029 33.0 4.8 32 95-126 369-402 (744)
465 COG0556 UvrB Helicase subunit 21.4 1.2E+02 0.0025 32.0 4.0 45 76-124 17-61 (663)
466 PF04851 ResIII: Type III rest 21.4 1.2E+02 0.0026 25.7 3.7 38 79-117 11-51 (184)
467 TIGR02370 pyl_corrinoid methyl 21.2 2.5E+02 0.0053 25.2 5.8 30 109-155 101-130 (197)
468 PLN03210 Resistant to P. syrin 21.1 1.5E+02 0.0033 34.2 5.4 41 79-119 192-234 (1153)
469 COG1832 Predicted CoA-binding 21.1 1.1E+02 0.0023 26.2 3.1 40 78-124 7-47 (140)
470 COG4152 ABC-type uncharacteriz 21.1 45 0.00097 31.6 0.9 29 92-120 26-57 (300)
471 COG1149 MinD superfamily P-loo 21.1 1.1E+02 0.0024 29.3 3.5 30 96-126 3-35 (284)
472 cd03223 ABCD_peroxisomal_ALDP 21.0 72 0.0016 27.5 2.2 25 93-117 26-52 (166)
473 PRK07004 replicative DNA helic 21.0 2.7E+02 0.0058 28.6 6.7 47 76-126 199-248 (460)
474 KOG3824 Huntingtin interacting 21.0 2.7E+02 0.0057 27.4 6.1 31 95-125 368-400 (472)
475 PRK02496 adk adenylate kinase; 20.9 1.1E+02 0.0023 26.7 3.4 21 96-116 3-25 (184)
476 PF06888 Put_Phosphatase: Puta 20.9 4.7E+02 0.01 24.3 7.7 47 79-130 75-124 (234)
477 cd08550 GlyDH-like Glycerol_de 20.9 6.2E+02 0.013 24.7 9.1 42 76-122 10-51 (349)
478 TIGR01313 therm_gnt_kin carboh 20.8 71 0.0015 27.1 2.1 19 98-116 2-22 (163)
479 PF13191 AAA_16: AAA ATPase do 20.7 1.1E+02 0.0023 26.1 3.3 27 93-119 23-51 (185)
480 cd01130 VirB11-like_ATPase Typ 20.6 79 0.0017 27.8 2.4 36 80-118 14-51 (186)
481 PRK00625 shikimate kinase; Pro 20.4 1E+02 0.0022 27.1 3.0 20 97-116 3-24 (173)
482 PRK00105 cobT nicotinate-nucle 20.3 5.8E+02 0.013 25.1 8.6 42 76-117 22-80 (335)
483 PTZ00202 tuzin; Provisional 20.1 1.8E+02 0.0039 30.3 5.0 137 77-229 271-425 (550)
484 PF00009 GTP_EFTU: Elongation 20.1 92 0.002 27.2 2.8 24 93-116 2-27 (188)
485 PRK12269 bifunctional cytidyla 20.0 1.1E+02 0.0023 34.3 3.7 23 95-117 35-59 (863)
486 PRK05569 flavodoxin; Provision 20.0 2.6E+02 0.0057 23.0 5.5 46 78-123 67-114 (141)
487 KOG0365 Beta subunit of farnes 20.0 92 0.002 30.8 2.8 48 323-378 189-236 (423)
488 KOG0333 U5 snRNP-like RNA heli 20.0 1E+03 0.022 25.3 10.3 101 77-244 505-605 (673)
489 cd02069 methionine_synthase_B1 20.0 2.7E+02 0.0059 25.3 5.9 30 110-156 106-135 (213)
490 COG4586 ABC-type uncharacteriz 20.0 1E+02 0.0022 29.8 3.0 31 93-123 49-81 (325)
No 1
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=1.3e-68 Score=547.73 Aligned_cols=344 Identities=70% Similarity=1.081 Sum_probs=282.1
Q ss_pred ccccccCCCCCccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHH
Q 017061 32 KSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAF 111 (378)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~ 111 (378)
++--|+++.+.|+|++|++||++++.+++.|.|+++|.+.+..++|+||+++|++||+|+.++++||||||||||||++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gL~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~ 92 (510)
T PLN02913 13 RNLLFSSSTEEPELGDFLRYLDSLKNYEKSGVPKDAGTDSDDGFDLGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAF 92 (510)
T ss_pred HHHhccccccCcCHHHHHHHHHhhccccccCCccccccccccCCCHHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHH
Confidence 34456677789999999999999999988899998887666679999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhc
Q 017061 112 LSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQN 191 (378)
Q Consensus 112 l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~ 191 (378)
|++||+++||+||+||||||.+|+|||++|+.|.+|++++|.++++++++..+++.......+|+||++|++||++|.+.
T Consensus 93 l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~ 172 (510)
T PLN02913 93 LSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQE 172 (510)
T ss_pred HHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999988999999999999999999888765444557999999999999999999
Q ss_pred CCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHH
Q 017061 192 HVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDE 271 (378)
Q Consensus 192 ~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~ 271 (378)
++|++|+|+|+||++|+||++++..|+++|||||++||+++||+|+|+||++|+|||+++.++|++..+.+++..++.+.
T Consensus 173 ~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~g~pvV~~~~~~~~~~~vi~~~ 252 (510)
T PLN02913 173 NVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPFLPHIESILRDK 252 (510)
T ss_pred CCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccCCCCEEECCCCCHHHHHHHHHH
Confidence 99999999999999999999987778999999999999999999999999999999999999999843456777788888
Q ss_pred HHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhHHHHHHHHHHHHHHHHhcC
Q 017061 272 ASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQG 351 (378)
Q Consensus 272 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~ 351 (378)
|++.+++++.++..+.......+....+..+...++.+.............+++++|+|.||+.|+++|++++..|...+
T Consensus 253 a~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~~~~ 332 (510)
T PLN02913 253 ASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQG 332 (510)
T ss_pred HHHhCCCEEEeccccccceeecccccCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99899998876422111000000000000010000000000000000012347899999999999999999999885456
Q ss_pred CCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 352 GYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 352 ~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
++++.+.|++||+++ .||||++.+
T Consensus 333 ~~i~~~~I~~gL~~~-~~pGR~E~i 356 (510)
T PLN02913 333 WRISDASIRAGLENT-NLLGRSQFL 356 (510)
T ss_pred CCCCHHHHHHHHHhC-CCCCceEEe
Confidence 789999999999997 799999875
No 2
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1e-66 Score=516.24 Aligned_cols=274 Identities=39% Similarity=0.600 Sum_probs=238.6
Q ss_pred CCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHH
Q 017061 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALN 153 (378)
Q Consensus 74 ~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~ 153 (378)
+++|+||.++++.||+|++++++|||+|||||||||+|+++||+++||+||.||||||.+|+|||++| |.+|+++++.
T Consensus 24 ~~gL~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~in--g~~Isd~~~~ 101 (427)
T COG0285 24 DLGLERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRIN--GEPISDEELA 101 (427)
T ss_pred cCChHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEEC--CEECCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhc
Q 017061 154 CLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAAL 233 (378)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~l 233 (378)
++++++++..+..+ ..+||+||++|++||++|.+.++|++|+|||+|||+|+||+++ |.++|||||+.||+++|
T Consensus 102 ~~~~~ve~~~~~~~---~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNVi~---p~vsvIT~I~lDH~~~L 175 (427)
T COG0285 102 AAFERVEEAAGSLD---LISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNVIE---PDVSVITSIGLDHTAFL 175 (427)
T ss_pred HHHHHHHHHhcccc---cCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchhccC---CceEEEcccChhHHHHh
Confidence 99998776644322 4789999999999999999999999999999999999999998 57999999999999999
Q ss_pred CCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc
Q 017061 234 GGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER 313 (378)
Q Consensus 234 G~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (378)
|+|+|+||++|+||||++.|+|+...+.|++..++++.|.+.++++..+.... ...+. ...+.++.
T Consensus 176 G~tie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~~--------~~~~~----~~~~~~~~-- 241 (427)
T COG0285 176 GDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPDF--------QVLEE----GNGFSFQG-- 241 (427)
T ss_pred CCcHHHHHHHhhhhccCCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccch--------hhccc----cceEEEec--
Confidence 99999999999999999999999955678899999999999999988753110 00000 00111110
Q ss_pred cccccccccccccCCCchh-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEec
Q 017061 314 DLKLSIELLDVKLCMIGNH-QLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN 377 (378)
Q Consensus 314 ~~~~~~~~~~i~l~l~G~h-q~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~ 377 (378)
.....++.+|++|.| |+.||++|++++..+.. .++.+.|++||+++ .||||++.+.
T Consensus 242 ----~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l~~---~i~~~~i~~gl~~~-~wpGR~e~l~ 298 (427)
T COG0285 242 ----GGGLLDLPLPLLGGHHQIENAALAIAALEALGK---EISEEAIRKGLANV-DWPGRLERLS 298 (427)
T ss_pred ----CCeeeeeccccccchhHHHHHHHHHHHHHHhcc---cCCHHHHHHHHHhC-cCCceEEEec
Confidence 123456889999988 99999999999999932 48999999999996 8999999875
No 3
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=3e-58 Score=466.15 Aligned_cols=292 Identities=29% Similarity=0.401 Sum_probs=248.5
Q ss_pred ccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCC--CCCcEEEEeCCCChHHHHHHHHHHHHHcC
Q 017061 43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPH--SKFKTVHIAGTKGKGSTAAFLSSILRAEG 120 (378)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~--~~~~~I~VTGTnGKtSTt~~l~~iL~~~G 120 (378)
.+|+++++||+++..+..+..+ ...+++|+||+++|++||+|+ .++++|||||||||||||+|+++||+++|
T Consensus 14 ~~y~~a~~~L~sl~~~~~~~~~------~~~~~~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G 87 (530)
T PLN02881 14 DSYEEALDALSSLITKKSRADP------SNPGDQFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCG 87 (530)
T ss_pred cCHHHHHHHHHhcccchhhccc------cccCCChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence 3699999999998765322111 122488999999999999998 78899999999999999999999999999
Q ss_pred CceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEee
Q 017061 121 YSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA 200 (378)
Q Consensus 121 ~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv 200 (378)
+|||+||||||.+++|||++| |.+|+++.|.+++.++...++.........|++||++|++||.+|.+.++|++|+|+
T Consensus 88 ~rvGl~tSPhL~~~rERirin--g~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEv 165 (530)
T PLN02881 88 FRTGLFTSPHLIDVRERFRLD--GVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEV 165 (530)
T ss_pred CCEEEECCCccCcceeEEEEC--CEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999999999999999999999 999999999999988777766543223345999999999999999999999999999
Q ss_pred CCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEE
Q 017061 201 GLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVV 280 (378)
Q Consensus 201 g~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~ 280 (378)
|+||++|+||++.. |+++|||||+.||+++||+|+|+||++|++||+++.++|+. .++|++.+++++.|++.+++++
T Consensus 166 GlgGr~DaTnvi~~--p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~-~q~~ea~~vl~~~A~e~~a~l~ 242 (530)
T PLN02881 166 GLGGRLDATNVVQK--PVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTV-PQPDEAMRVLEERASELGVPLQ 242 (530)
T ss_pred cCCCCchhhhccCC--CCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEe-CCChHHHHHHHHHHHHhCCcEE
Confidence 99999999998743 78999999999999999999999999999999999999998 5788899999999999999988
Q ss_pred EecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhHHHHHHHHHHHHHHHHh-cC--------
Q 017061 281 SAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRD-QG-------- 351 (378)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~-~~-------- 351 (378)
.+... + .+. ...++++|.|.||..||++|++++..+.. .+
T Consensus 243 ~v~~~---------------~----~~~------------~~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~~~~~~ 291 (530)
T PLN02881 243 VVEPL---------------D----SYG------------LSGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEEFEALL 291 (530)
T ss_pred Eeccc---------------c----cce------------ecccCCCCCChhHHHhHHHHHHHHHHHHhhcccccccccc
Confidence 65310 0 000 01367899999999999999999988632 22
Q ss_pred -CCCCHHHHHHHHhcCCCCceeEEEec
Q 017061 352 -GYLMLSYFLSGFREEHFWRAEIFLMN 377 (378)
Q Consensus 352 -~gi~~~~I~~gL~~~~~~pgR~~~~~ 377 (378)
....++.|++||+++ .||||++.+.
T Consensus 292 ~~~~l~~~i~~GL~~~-~wpGR~e~v~ 317 (530)
T PLN02881 292 QAGTLPEQFIKGLSTA-SLQGRAQVVP 317 (530)
T ss_pred ccCCCHHHHHHHHHhC-CCCceEEEec
Confidence 134456999999996 8999999863
No 4
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=4.5e-57 Score=451.47 Aligned_cols=274 Identities=39% Similarity=0.609 Sum_probs=230.3
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (378)
|+||+++|++||+|+.++++||||||||||||++||++||+++|++||+|||||+.+|+|||++| |.+++++++.+++
T Consensus 1 l~r~~~~l~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~--g~~i~~~~~~~~~ 78 (397)
T TIGR01499 1 LERMKKLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRIN--GEPISDEELAQAF 78 (397)
T ss_pred ChHHHHHHHHcCCcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEEC--CEECCHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCC
Q 017061 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS 236 (378)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~t 236 (378)
+++++..+.+. .+||+||+.|++||.+|.+.++|++|+|+|++|++|++|+++ |+++|||||++||+++||+|
T Consensus 79 ~~v~~~~~~~~----~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i~---p~vaViTnI~~DHl~~lG~t 151 (397)
T TIGR01499 79 EQVRPILEKLS----QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVIE---PLVSVITSIGLDHTEILGDT 151 (397)
T ss_pred HHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCcccccccC---CCeEEEccccHHHHHHhCcc
Confidence 99987765322 379999999999999999999999999999999999999986 68999999999999999999
Q ss_pred HHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeeccccc
Q 017061 237 LETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLK 316 (378)
Q Consensus 237 le~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (378)
+|+|+++|++||+++.++|+| .|+|.+..++.+.+.+.+++++.++. +.. +....+ ..+.+...
T Consensus 152 ~e~ia~~Ka~I~k~~~~~v~~-~d~~~~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~-----~~~~~~~~---- 215 (397)
T TIGR01499 152 LEEIAWEKAGIIKEGVPIVTG-PQEPEALNVLKKKAQEKGAPLFVVGR-DFN-----YSETDE-----NYLSFSGA---- 215 (397)
T ss_pred HHHHHHHHhCccCCCCCEEEc-CCChHHHHHHHHHHHHcCCCEEEecc-cee-----eccccc-----ceEEeecc----
Confidence 999999999999999999999 57888878877777777777776642 110 000000 01111100
Q ss_pred ccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEec
Q 017061 317 LSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN 377 (378)
Q Consensus 317 ~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~ 377 (378)
......+.++++|.||++|+++|++++..|....+.++.+.|++||+++ .|||||+.++
T Consensus 216 -~~~~~~~~~~l~G~~~~~N~~~Aiaa~~~lg~~~~~i~~~~i~~~L~~~-~~pGR~e~i~ 274 (397)
T TIGR01499 216 -NLFLEPLALSLLGDHQAENAALALAALEVLGKQRPKLSEEAIRKGLANT-IWPGRLEILS 274 (397)
T ss_pred -cccccccCCCCCCHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhC-CCCceEEEEe
Confidence 0011346789999999999999999999983222246799999999998 6999998763
No 5
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=9.9e-58 Score=446.30 Aligned_cols=297 Identities=37% Similarity=0.543 Sum_probs=263.2
Q ss_pred CccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCC--CCCCcEEEEeCCCChHHHHHHHHHHHHHc
Q 017061 42 EPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNP--HSKFKTVHIAGTKGKGSTAAFLSSILRAE 119 (378)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p--~~~~~~I~VTGTnGKtSTt~~l~~iL~~~ 119 (378)
.++|+++..||+++........++++..+.+...+|.||+++|+++|+| +.++.+|||||||||||||+++++||++.
T Consensus 18 ~~~~~~~v~~lnsLqsn~~~i~~~~~~~~~~~~~~l~~m~~~L~~lg~p~d~~~l~iIHVAGTkGKGStcaF~~SILr~~ 97 (496)
T KOG2525|consen 18 SKTYEDAVRYLNSLQSNAALIEKLRRQDDNPQGLTLPRMRKLLERLGNPEDQNSLNIIHVAGTKGKGSTCAFTESILRQQ 97 (496)
T ss_pred chhHHHHHHHHHHHHhHHHhhhhhhhccCCccccCHHHHHHHHHHhCChhhhhheeEEEEecCCCCcchHHHHHHHHHhc
Confidence 4579999999999998877777777777777889999999999999999 88999999999999999999999999999
Q ss_pred CCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEe
Q 017061 120 GYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIE 199 (378)
Q Consensus 120 G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlE 199 (378)
|+|+|+||||||.+.+|||++| |+|||++.|.++|.++.+.+++....+...|++||++|++||.+|..++||++|+|
T Consensus 98 g~rtG~yTSPHLl~vrErIriN--GqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViE 175 (496)
T KOG2525|consen 98 GLRTGFYTSPHLLSVRERIRIN--GQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIE 175 (496)
T ss_pred ccccccccChhhcchhheEEEC--CEECCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEEEEE
Confidence 9999999999999999999999 99999999999999999998888777788899999999999999999999999999
Q ss_pred eCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeE
Q 017061 200 AGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQV 279 (378)
Q Consensus 200 vg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~ 279 (378)
||+||++|+||++. +|.++.||+|+.||++++|+|+++||++||||||.+.|+++. .++++++.++++.|.+..+++
T Consensus 176 vGlGG~~DaTNvI~--kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gvpaft~-~q~~e~~nvL~~ra~e~~~~L 252 (496)
T KOG2525|consen 176 VGLGGELDATNVIE--KPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGVPAFTV-PQPPEALNVLKERASELGVPL 252 (496)
T ss_pred eccccccccccccc--cceEEEEeecCCchHHHHhhHHHHHHHHhccccccCCceEEc-CCcHHHHHHHHHHHHhcCCCc
Confidence 99999999999995 489999999999999999999999999999999999999998 588999999999999999888
Q ss_pred EEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCC-------
Q 017061 280 VSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGG------- 352 (378)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~------- 352 (378)
....... ..+.....+.+.|.||..|+.+|+.++..+..+..
T Consensus 253 ~~v~p~~-------------------------------~~~ls~~~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~ 301 (496)
T KOG2525|consen 253 FVVPPLE-------------------------------AYELSGVNLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVL 301 (496)
T ss_pred eecCCch-------------------------------hhhhcCCcccccccchhhhhHHHHHHHHHHHHhcCcccccCC
Confidence 7642110 00122344889999999999999999987753211
Q ss_pred -----C--CCHHHHHHHHhcCCCCceeEEEe
Q 017061 353 -----Y--LMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 353 -----g--i~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
+ +++ .+..||+++ .||||.+.+
T Consensus 302 ~~~~~~~~i~~-~~l~GL~~~-~wPGR~qil 330 (496)
T KOG2525|consen 302 DALQTSGLIPP-AFLSGLAST-DWPGRLQIL 330 (496)
T ss_pred CccccccCCCH-HHhcchhhc-cCCCceEEE
Confidence 1 444 455699996 899999875
No 6
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=3.6e-54 Score=432.86 Aligned_cols=281 Identities=29% Similarity=0.382 Sum_probs=228.5
Q ss_pred HHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceE
Q 017061 45 LMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 45 ~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg 124 (378)
+.++++|++++..+ |+ +++|+||+++|+.||+|+++.++||||||||||||++||+++|+++|++||
T Consensus 13 ~~~~~~~l~~~~~~---~~----------~~~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG 79 (416)
T PRK10846 13 LASWLSYLENLHSK---TI----------DLGLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVG 79 (416)
T ss_pred HHHHHHHHHhcccc---CC----------CCChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCce
Confidence 57788888887755 22 378999999999999999999999999999999999999999999999999
Q ss_pred eeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCC
Q 017061 125 CYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGG 204 (378)
Q Consensus 125 ~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg 204 (378)
+|||||+.+++|||++| |.+++++++.+.++++.+.. +...||+||+.|++||.+|.+.++|++|+|+|+||
T Consensus 80 ~~tSphl~~~~eri~i~--g~~i~~~~~~~~~~~~~~~~------~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglgg 151 (416)
T PRK10846 80 VYSSPHLVRYTERVRIQ--GQELPESAHTASFAEIEAAR------GDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGG 151 (416)
T ss_pred EECCCCCCCcceEEEEC--CEECCHHHHHHHHHHHHHHh------cCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 99999999999999999 99999999999888876543 23369999999999999999999999999999999
Q ss_pred CcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecc
Q 017061 205 ARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYD 284 (378)
Q Consensus 205 ~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~ 284 (378)
++|+||+++ |+++|||||++||+++||+|+|+|+++|++||+.+.++|+| .++ ...++.+.+.+.+++++.++.
T Consensus 152 rld~tn~i~---p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~~~~~V~~-~~d--~~~~~~~~a~~~~~~~~~~~~ 225 (416)
T PRK10846 152 RLDATNIVD---ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVG-EPD--MPSTIADVAQEKGALLQRRGV 225 (416)
T ss_pred CchhhhccC---CCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcCCCeEEEC-Ccc--HhHHHHHHHHHhCCcEEEecc
Confidence 999999986 58999999999999999999999999999999999999998 333 123455666777788765421
Q ss_pred cccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q 017061 285 AGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFR 364 (378)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~ 364 (378)
. .. +... .. ++.+... ......++++ .||++|+++|++++..+ +++++.+.|++||+
T Consensus 226 ~-~~-----~~~~-~~-----~~~~~~~-------~~~~~~~~l~-~~~~~N~~~Aia~~~~~---~~~i~~~~i~~~L~ 282 (416)
T PRK10846 226 D-WN-----YSVT-DH-----DWAFSDG-------DGTLENLPLP-NVPLPNAATALAALRAS---GLEVSEQAIRDGIA 282 (416)
T ss_pred e-ee-----eecc-Cc-----eEEEecC-------ccccccCCcc-chHHHHHHHHHHHHHHc---CCCCCHHHHHHHHH
Confidence 1 00 0000 00 1111100 0001235555 47999999999998765 35899999999999
Q ss_pred cCCCCceeEEEe
Q 017061 365 EEHFWRAEIFLM 376 (378)
Q Consensus 365 ~~~~~pgR~~~~ 376 (378)
++ .||||++.+
T Consensus 283 ~~-~~~gR~e~~ 293 (416)
T PRK10846 283 SA-ILPGRFQIV 293 (416)
T ss_pred hC-CCCceEEEE
Confidence 98 599999875
No 7
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=2.3e-36 Score=307.52 Aligned_cols=228 Identities=20% Similarity=0.215 Sum_probs=170.4
Q ss_pred hCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 017061 87 LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA 166 (378)
Q Consensus 87 lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~ 166 (378)
+++|+.++++||||||||||||++||+++|+++|+++++++||+.. ++ +.+++.
T Consensus 88 ~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~-------i~--~~~~~~----------------- 141 (460)
T PRK00139 88 YGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNG-------IG--GELIPS----------------- 141 (460)
T ss_pred hcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccc-------cC--Ceeccc-----------------
Confidence 5788888999999999999999999999999999999999998742 34 433321
Q ss_pred HhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhc
Q 017061 167 IRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSG 246 (378)
Q Consensus 167 ~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~ 246 (378)
...|+|++.++.+|..|.+.++|++|+|+|+++. +. ..+...+|+++|||||++||+++|| |+|+|+++|++
T Consensus 142 -----~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~-~~-~~l~~~~p~iaViTnI~~dHl~~~g-t~e~i~~~K~~ 213 (460)
T PRK00139 142 -----GLTTPDALDLQRLLAELVDAGVTYAAMEVSSHAL-DQ-GRVDGLKFDVAVFTNLSRDHLDYHG-TMEDYLAAKAR 213 (460)
T ss_pred -----CCCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhH-hh-chhcCCcCCEEEEcCCCcccCCcCC-CHHHHHHHHHH
Confidence 2357788888888999999999999999996542 11 1123346899999999999999998 99999999999
Q ss_pred cccCCC-eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccccccccc
Q 017061 247 IIKYGR-PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLSIELLDV 324 (378)
Q Consensus 247 Iik~~~-~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i 324 (378)
|++... .+|+| .|++....+.. . +..+.+.. ...++...++.+...+ .+.+. ..+
T Consensus 214 i~~~~~~~~v~n-~dd~~~~~~~~----~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~---~~~ 270 (460)
T PRK00139 214 LFSELGLAAVIN-ADDEVGRRLLA----L--PDAYAVSM-------------AGADLRATDVEYTDSGQTFTLV---TEV 270 (460)
T ss_pred HHhcCCCeEEEE-cCcHhHHHHHh----h--cEEEEecC-------------CCCcEEEEEEEEecCceEEEEE---EEE
Confidence 998754 78999 57776544322 1 22222210 0111211122111111 11111 157
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 325 KLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 325 ~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
.++++|.||++|+++|++++..+ |++++.|+++|++|.++|||++.+
T Consensus 271 ~l~l~G~hn~~NalaAia~a~~l-----gi~~~~i~~~L~~~~~~~gR~e~~ 317 (460)
T PRK00139 271 ESPLIGRFNVSNLLAALAALLAL-----GVPLEDALAALAKLQGVPGRMERV 317 (460)
T ss_pred EecccchhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCcEEE
Confidence 78999999999999999999999 999999999999998899999875
No 8
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=2.8e-34 Score=315.79 Aligned_cols=246 Identities=17% Similarity=0.173 Sum_probs=170.1
Q ss_pred hHHHHHHHH-HhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061 77 LGRMNRLMD-RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (378)
Q Consensus 77 L~r~~~ll~-~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (378)
++.+..+.+ .+++|+.++++||||||||||||+.||+++|+.+|+++++++|. ++++ + +..+..
T Consensus 94 ~~al~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~-----~~~i--~--~~~i~~------ 158 (958)
T PRK11929 94 RKALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTL-----GARL--D--GRLIPG------ 158 (958)
T ss_pred HHHHHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCc-----cccC--C--Ceeeec------
Confidence 344555555 68899999999999999999999999999999999999998663 2222 2 221210
Q ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCC
Q 017061 156 FHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGG 235 (378)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~ 235 (378)
+...|..+|+.++ |..|.+.++|++|+|+|+++. +.. .+...+|+++|||||++||+++||
T Consensus 159 --------------~~t~~~~~~~~~~--l~~~~~~~~~~~VlE~ss~~l-~~~-rl~~~~p~iaviTnI~~dHl~~~g- 219 (958)
T PRK11929 159 --------------SLTTPDAIILHRI--LARMRAAGADAVAMEASSHGL-EQG-RLDGLRIAVAGFTNLTRDHLDYHG- 219 (958)
T ss_pred --------------CCCCCCHHHHHHH--HHHHHHCCCCEEEEEeccchH-hhC-cccccccCEEEEeCCCccccccCC-
Confidence 1123444444443 346778999999999986542 211 233346789999999999999998
Q ss_pred CHHHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeec
Q 017061 236 SLETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAE 312 (378)
Q Consensus 236 tle~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (378)
|+|+|+++|++||+ +++++|+| .|+|....++...+. ...+.++... ...++...++.....
T Consensus 220 t~e~i~~~K~~i~~~~~~~~~~Vln-~dd~~~~~~~~~~~~--~~~~~~~~~~------------~~~d~~~~~~~~~~~ 284 (958)
T PRK11929 220 TMQDYEEAKAALFSKLPGLGAAVIN-ADDPAAARLLAALPR--GLKVGYSPQN------------AGADVQARDLRATAH 284 (958)
T ss_pred CHHHHHHHHHHHhcCCccCCeEEEE-CCCHHHHHHHHHcCC--CceEEEEeeC------------CCccEEEEEEEEcCC
Confidence 99999999999997 67889999 578876555433211 1133333210 001111111111100
Q ss_pred c-ccccc--ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 313 R-DLKLS--IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 313 ~-~~~~~--~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
+ .+.+. .+...+.+|++|.||++|+++|++++..+ |++.+.|+++|++|.++||||+.+
T Consensus 285 ~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l-----gi~~~~I~~~L~~~~~~~gR~e~i 346 (958)
T PRK11929 285 GQVFTLATPDGSYQLVTRLLGRFNVSNLLLVAAALKKL-----GLPLAQIARALAAVSPVPGRMERV 346 (958)
T ss_pred ceEEEEEeCCceEEEEecCccHhhHHHHHHHHHHHHHc-----CCCHHHHHHHHhcCCCCCCCcEEe
Confidence 1 11111 12235789999999999999999999999 999999999999998899999876
No 9
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=2.3e-33 Score=282.29 Aligned_cols=217 Identities=25% Similarity=0.309 Sum_probs=155.9
Q ss_pred hCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 017061 87 LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA 166 (378)
Q Consensus 87 lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~ 166 (378)
+++| +.++|+||||||||||+.||+++|+..|+ .+.|+. +++++ +|.|.+
T Consensus 69 ~~~~--~~~vI~VTGTnGKTTt~~ll~~iL~~~g~---~~~t~g--n~n~~-----ig~p~~------------------ 118 (417)
T TIGR01143 69 RAKF--SGKVIGITGSSGKTTTKEMLAAILSHKYK---VFATPG--NFNNE-----IGLPLT------------------ 118 (417)
T ss_pred HhhC--CCCEEEEcCCCchhHHHHHHHHHHhccCc---EecCCC--cCCCc-----cchhHH------------------
Confidence 3444 36899999999999999999999999987 344553 33321 243332
Q ss_pred HhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhc
Q 017061 167 IRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSG 246 (378)
Q Consensus 167 ~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~ 246 (378)
.++.+.++|++|+|+|+++..++..++...+|+++|||||++||+|+|| |+|+|+++|+.
T Consensus 119 -------------------~l~~~~~~~~~VlE~g~s~~g~~~~~~~~~~p~vaviTNi~~dHld~~g-s~e~~~~aK~~ 178 (417)
T TIGR01143 119 -------------------LLRAPGDHDYAVLEMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFG-SLEGIAEAKGE 178 (417)
T ss_pred -------------------HhcCCCCCeEEEEEeCCCCCCcHHHHhCccCCCEEEEcCCcHHHhhhcC-CHHHHHHHHHH
Confidence 1245678999999999888887766666667899999999999999998 99999999999
Q ss_pred cccC---CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc--ccccc--c
Q 017061 247 IIKY---GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER--DLKLS--I 319 (378)
Q Consensus 247 Iik~---~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~ 319 (378)
||+. ++.+|+| .|||....+.. .+. ++++++|+... .++...++.....+ .+.+. .
T Consensus 179 l~~~~~~~~~~vln-~Dd~~~~~~~~-~~~--~~~~~~~g~~~-------------~~~~~~~i~~~~~~~~~~~~~~~~ 241 (417)
T TIGR01143 179 ILQGLKENGIAVIN-ADDPAFAKFAK-RLP--NKAILSFGFEG-------------GDFSAADISYSALGSTGFTLVAPG 241 (417)
T ss_pred HHcccCCCCEEEEe-CCcHHHHHHHH-hcc--CCcEEEECCCC-------------CcEEEEEEEEcCCCCEEEEEEeCC
Confidence 9964 6789999 57776543322 211 24566664211 01111111111000 11111 1
Q ss_pred cccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEE
Q 017061 320 ELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFL 375 (378)
Q Consensus 320 ~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~ 375 (378)
+..++.+|++|.||++|+++|++++..+ |++++.|.++|++|.++||||+.
T Consensus 242 ~~~~~~~~l~G~hn~~N~laAia~~~~l-----Gi~~~~i~~~l~~~~~~~gR~e~ 292 (417)
T TIGR01143 242 GEFEVSLPLLGRHNVMNALAAAALALEL-----GIPLEEIAEGLAELKLVKGRFEI 292 (417)
T ss_pred ceEEEEccCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceeE
Confidence 2235788999999999999999999999 99999999999999889999984
No 10
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=6.5e-33 Score=282.59 Aligned_cols=250 Identities=19% Similarity=0.196 Sum_probs=171.0
Q ss_pred hHHHHHHHH-HhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061 77 LGRMNRLMD-RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (378)
Q Consensus 77 L~r~~~ll~-~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (378)
+.-+.++.+ .+++|+.++++|+||||||||||++||+++|++.|++|++++|++..... .|.+|.|
T Consensus 67 ~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~----n~~ig~p--------- 133 (464)
T TIGR01085 67 RHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGG----NDLIKNP--------- 133 (464)
T ss_pred HHHHHHHHHHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECC----eeeecCc---------
Confidence 344555554 45667778899999999999999999999999999999999998742110 1111211
Q ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHH-HHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcC
Q 017061 156 FHKIKGVLDEAIRLENGCITHFEVLTAMA-FALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALG 234 (378)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~t~fE~~t~~a-~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG 234 (378)
..+|.||.+++.+ +..+.+.++|++|+|+|+++ ++...+. ..+|+++|||||++||++++|
T Consensus 134 ----------------~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~-~~~~~l~-~~~p~iaviTnI~~dHl~~~g 195 (464)
T TIGR01085 134 ----------------AALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHA-LAQGRVR-GVRFDAAVFTNLSRDHLDFHG 195 (464)
T ss_pred ----------------ccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHH-HhhCCcc-CceeCEEEEccCCCCCCcccC
Confidence 2467888888654 44566789999999999543 3333333 356899999999999999997
Q ss_pred CCHHHHHHHHhccccC---CCeEEEcCCCChhHHHHHHHHHHhhCCeE-EEecccccchhccccccCCCCCCcccceeEe
Q 017061 235 GSLETIAMAKSGIIKY---GRPLVLGGPFLPHIEHILRDEASLMCSQV-VSAYDAGIRATINGLSMFNDRPCQSCDIIVQ 310 (378)
Q Consensus 235 ~tle~ia~~Ka~Iik~---~~~~V~~~~d~~~~~~vl~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (378)
|+|+|+++|++|++. ++.+|+| .|+|....+.. .....+ +.+.....+ ....++...++.+.
T Consensus 196 -s~e~i~~~K~~i~~~~~~~g~~v~n-~dd~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 261 (464)
T TIGR01085 196 -TMENYFAAKASLFTELGLKRFAVIN-LDDEYGAQFVK----RLPKDITVSAITQPAD--------GRAQDIKITDSGYS 261 (464)
T ss_pred -CHHHHHHHHHHHhccccCCCeEEEE-cCCHHHHHHHH----hcCCCeEEEEecCCCc--------cccccEEEEEEEEe
Confidence 999999999999974 4578999 57776543322 111222 221111000 00011111111111
Q ss_pred ecc-ccccc--ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHhcCCCCceeEEEe
Q 017061 311 AER-DLKLS--IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGY-LMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 311 ~~~-~~~~~--~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~g-i~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
..+ .+.+. .+...+.+|++|.||++|+++|++++..+ + ++.+.|+++|++|.++|||++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l-----g~i~~e~i~~~L~~~~~~~gR~e~~ 326 (464)
T TIGR01085 262 FEGQQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHL-----GGIDLEDIVAALEKFRGVPGRMELV 326 (464)
T ss_pred cCceEEEEEeCCceEEEEecCccHhHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHhCCCCCCCcEEE
Confidence 111 11111 12235789999999999999999999999 8 99999999999998899999875
No 11
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=5.1e-33 Score=284.25 Aligned_cols=231 Identities=21% Similarity=0.200 Sum_probs=161.3
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHH
Q 017061 78 GRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFH 157 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~ 157 (378)
+.+..+.+.+- ...+.++|+||||||||||+.||+++|+..|.+++...+ + .|.+|.|.+
T Consensus 93 ~al~~la~~~~-~~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~-----~-----n~~iG~p~~--------- 152 (479)
T PRK14093 93 AALRDLGRAAR-ARLEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVAS-----F-----NNHWGVPLS--------- 152 (479)
T ss_pred HHHHHHHHHHH-HhcCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCcc-----C-----CCccchhHH---------
Confidence 34444443332 235678999999999999999999999999876543222 1 122344331
Q ss_pred HHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCH
Q 017061 158 KIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSL 237 (378)
Q Consensus 158 ~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tl 237 (378)
+. -...++|++|+|+|+++..|...++...+|+++|||||++||+++|| |+
T Consensus 153 ---------------------------l~-~~~~~~~~~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~g-t~ 203 (479)
T PRK14093 153 ---------------------------LA-RCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFS-GI 203 (479)
T ss_pred ---------------------------HH-cCCCCCcEEEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcC-CH
Confidence 01 12357899999999888878777777788999999999999999997 99
Q ss_pred HHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCC-eEEEecccccchhccccccCCCCCCcccceeEeecc
Q 017061 238 ETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCS-QVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER 313 (378)
Q Consensus 238 e~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (378)
|+|+++|..|++ +++.+|+| .|||....+... +...+. ++++|+... ..++...++.+...+
T Consensus 204 e~~~~aK~~l~~~~~~~g~~VlN-~Dd~~~~~l~~~-~~~~~~~~vi~~g~~~------------~~~~~~~~~~~~~~~ 269 (479)
T PRK14093 204 EAIADAKAEIFTGLEPGGAAVLN-RDNPQFDRLAAS-ARAAGIARIVSFGADE------------KADARLLDVALHADC 269 (479)
T ss_pred HHHHHHHHHHHccCCCCCEEEEe-CCcHHHHHHHHH-hhhccCCcEEEEeCCC------------CccEEEEEEEEcCCc
Confidence 999999999994 56789999 578876554322 222222 566665211 011111112111111
Q ss_pred -ccccc--ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 314 -DLKLS--IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 314 -~~~~~--~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
.+.+. .....+++|++|.||++|+++|++++..+ |++.+.|+++|++|.+.|||++.+
T Consensus 270 ~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l-----Gi~~~~i~~~l~~~~~~~gR~~~~ 330 (479)
T PRK14093 270 SAVHADILGHDVTYKLGMPGRHIAMNSLAVLAAAELA-----GADLALAALALSQVQPAAGRGVRH 330 (479)
T ss_pred eEEEEEECCceEEEEecCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCcCCcceEE
Confidence 11111 12245889999999999999999999999 999999999999998899997653
No 12
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=2.3e-32 Score=295.74 Aligned_cols=250 Identities=22% Similarity=0.230 Sum_probs=172.4
Q ss_pred HHHHHHHHh--CCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061 79 RMNRLMDRL--GNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (378)
Q Consensus 79 r~~~ll~~l--g~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (378)
-...+++.| +.|+.++|+|+||||||||||++||++||+.+|++||+++|+++ .+| +..+...+
T Consensus 462 v~~~Il~~lfp~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~-------~i~--~~~i~~g~----- 527 (864)
T TIGR02068 462 VARAIVDMLFPAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGV-------YIG--KYLVEKGD----- 527 (864)
T ss_pred HHHHHHHHhcccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCce-------EEC--CEEEecCC-----
Confidence 456677766 35677899999999999999999999999999999999999764 344 43332100
Q ss_pred HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcC-C
Q 017061 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALG-G 235 (378)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG-~ 235 (378)
+..| ..++.+|.+.++|++|+|+|++|+++.++.+. +|+++|||||+.||++++| +
T Consensus 528 --------------~t~p-------~sa~~~l~~~~vd~aVlE~~~ggil~~gl~~~--~pdvaVITNI~~DHL~~~g~~ 584 (864)
T TIGR02068 528 --------------NTGP-------ASARRILMDPTVDAAVLETARGGILREGLAFD--RCDVGVVTNIAGDHLGIGDIN 584 (864)
T ss_pred --------------CCCh-------HHHHHHhhCCCCCEEEEEccCCchhhccCCcc--cccEEEEecCCHHHcCCCCCC
Confidence 0001 22345678889999999999999988887765 3799999999999999876 7
Q ss_pred CHHHHHHHHhccc---cCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEeccc-ccchhccccccCCCCCCcc-cceeEe
Q 017061 236 SLETIAMAKSGII---KYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDA-GIRATINGLSMFNDRPCQS-CDIIVQ 310 (378)
Q Consensus 236 tle~ia~~Ka~Ii---k~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 310 (378)
|+|+|+.+|++|+ ++++++|+| .|||.+.. .++...+++++|+.. +.+....... ..+..+.. .+..+.
T Consensus 585 tlE~ia~~K~~i~~~i~~~g~~VlN-aDd~~~~~----~a~~~~~~vi~f~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~ 658 (864)
T TIGR02068 585 TIEDLADVKRVVVEVVLPDGYAVLN-ADDPMVAA----MAEKCKGKIAYFSMDPNNPTVAAHIA-DGGRAVYYENGYIVI 658 (864)
T ss_pred CHHHHHHHHHHHHHhhcCCCEEEEE-CCCHHHHH----HHHhCCCCEEEEecCCCChHHHHHHH-cCCcEEEEcCCEEEE
Confidence 9999999999995 678899999 57886543 333445677777521 1110000000 00000000 000000
Q ss_pred eccccccc-ccccccccCCCc--hhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCC----CceeEEEe
Q 017061 311 AERDLKLS-IELLDVKLCMIG--NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHF----WRAEIFLM 376 (378)
Q Consensus 311 ~~~~~~~~-~~~~~i~l~l~G--~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~----~pgR~~~~ 376 (378)
..+..... ....++++++.| .||++|+++|+++++.+ +++.+.|++||++|.+ +||||+.+
T Consensus 659 ~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAiaaa~~l-----gi~~e~I~~gL~~F~~~~~~~pGR~e~~ 726 (864)
T TIGR02068 659 ARGGDEVAIARIAAIPLTMGGRVAFQIENALAAVAAAWAL-----GVPIELIRAGIRTFDADAAQAPGRFNLF 726 (864)
T ss_pred EecCccccccceeeeccccCCcccchHHHHHHHHHHHHHc-----CCCHHHHHHHHHhccccccCCCCceEEE
Confidence 00000000 011234555555 89999999999999999 9999999999999965 99999875
No 13
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.8e-32 Score=278.98 Aligned_cols=209 Identities=21% Similarity=0.178 Sum_probs=150.0
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
+.++|+||||||||||++||+++|+.+|+++.+- +++|.|++.
T Consensus 113 ~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~--------------gnig~~~~~----------------------- 155 (460)
T PRK01390 113 DAPFIAITGTNGKSTTTALIAHILREAGRDVQMG--------------GNIGTAVLT----------------------- 155 (460)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEc--------------Cccchhhhh-----------------------
Confidence 5589999999999999999999999999887531 124555431
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCC-
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG- 251 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~- 251 (378)
.....+.|++|+|+|+++ +|.++.++ |+++|||||++||+++|| |+|+|+++|++|+++.
T Consensus 156 --------------~~~~~~~~~~V~E~~~~~-ld~t~~i~---P~iaVITNI~~DHld~lg-sle~ia~~K~~ii~~~~ 216 (460)
T PRK01390 156 --------------LEPPPAGRVYVLELSSYQ-IDLAPSLD---PDVGVLLNLTPDHLDRHG-TMEGYAAAKERLFAGQG 216 (460)
T ss_pred --------------cccCCCCCEEEEEcCccc-cccccccC---CCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCC
Confidence 112246899999999986 58888775 689999999999999998 8999999999999877
Q ss_pred -CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCccc-ceeEeeccccccccccccc--ccC
Q 017061 252 -RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSC-DIIVQAERDLKLSIELLDV--KLC 327 (378)
Q Consensus 252 -~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i--~l~ 327 (378)
+++|+| .|+|.+..+.. .+...++++++++..... ..++... ...+...... ......+ .++
T Consensus 217 ~~~~V~n-~dd~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 282 (460)
T PRK01390 217 PDTAVIG-VDDAYCRAIAD-RLEAAGRRVVRISAGKPL----------ADGVYADGGKLVDARGGR--QVEIADLRGIPS 282 (460)
T ss_pred CCEEEEe-CCCHHHHHHHH-hccccCceEEEEeCCCCC----------cCceEEeCCEEEEecCCC--cceeeeHHhhcc
Confidence 889999 57777655533 332345677776421100 0000000 0000000000 0000112 257
Q ss_pred CCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 328 MIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 328 l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
++|.||++|+++|++++..| +++.+.|++||++|..|||||+.+
T Consensus 283 l~G~hn~~Na~aAiaa~~~l-----gi~~~~i~~gL~~~~~~~gR~e~i 326 (460)
T PRK01390 283 LPGAHNAQNAAAAYAAARAL-----GLSPEEIAAGLASFPGLAHRMEQV 326 (460)
T ss_pred CCchhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence 99999999999999999999 999999999999998899999875
No 14
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=1.9e-32 Score=280.24 Aligned_cols=230 Identities=17% Similarity=0.144 Sum_probs=153.5
Q ss_pred HhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHH
Q 017061 86 RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDE 165 (378)
Q Consensus 86 ~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~ 165 (378)
.+++|+.++++|+||||||||||+.||+++|+..|+++++.++.... +.+....+.++.|.+
T Consensus 102 ~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~-ig~~~~~~~~~~p~~----------------- 163 (481)
T PRK14022 102 FYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTL-DGETFFKSALTTPES----------------- 163 (481)
T ss_pred HhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeec-cCCeeeeCCCCCchH-----------------
Confidence 46789999999999999999999999999999998766554332110 111111111122211
Q ss_pred HHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhc-CCCHHHHHHHH
Q 017061 166 AIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAAL-GGSLETIAMAK 244 (378)
Q Consensus 166 ~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~l-G~tle~ia~~K 244 (378)
++.|++.. .+.+.++|++|+|+|+++.. ...++..+|+++|||||++||++++ ++|+|+|+.+|
T Consensus 164 --------~~l~~~~~-----~~~e~g~~~~v~EvsS~~~~--~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK 228 (481)
T PRK14022 164 --------LDLFKMMA-----EAVDNGMTHLIMEVSSQAYL--VGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHK 228 (481)
T ss_pred --------HHHHHHHH-----HHHHCCCCEEEEEechhHHH--hccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHH
Confidence 12233221 24578999999999987641 2223344689999999999999994 25999999999
Q ss_pred hccccCCCeEEEcCCC-ChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCccc-ceeEeeccccccccccc
Q 017061 245 SGIIKYGRPLVLGGPF-LPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSC-DIIVQAERDLKLSIELL 322 (378)
Q Consensus 245 a~Iik~~~~~V~~~~d-~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 322 (378)
++||++++++|+| .| ++. ..... .+ ...++++|+... ..++... .+.+...+ ....
T Consensus 229 ~~i~~~~~~~Vln-~d~d~~-~~~~~-~~--~~~~~~~~g~~~------------~~~~~~~~~~~~~~~~-----~~~~ 286 (481)
T PRK14022 229 RLLMENSKAVVVN-SDMDHF-SELLE-QV--TPQEHDFYGIDS------------ENQIMASNAFSFEATG-----KLAG 286 (481)
T ss_pred HHHhcCCCEEEEE-cCCCHH-HHHHH-Hh--cCCCEEEEecCC------------ccceEEEEEEEEEEcc-----cCCc
Confidence 9999998999999 45 432 22222 11 123555554210 0011100 11111000 0012
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 323 DVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 323 ~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
.+.++++|.||++|+++|++++..| |++.+.|+++|++ ..|||||+.+
T Consensus 287 ~~~l~l~G~hnv~NalaAia~a~~l-----gi~~~~i~~~L~~-~~~~gR~e~i 334 (481)
T PRK14022 287 TYDIQLIGKFNQENAMAAGLACLRL-----GASLEDIQKGIAQ-TPVPGRMEVL 334 (481)
T ss_pred eEEEEEechhhHHHHHHHHHHHHHc-----CCCHHHHHHHhcc-CCCCCCeEEE
Confidence 3667899999999999999999999 9999999999999 7999999876
No 15
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=3.1e-32 Score=276.68 Aligned_cols=217 Identities=21% Similarity=0.250 Sum_probs=152.1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
..++|+||||||||||+.||+++|...|..++ ++. ++| |.+|.|.+.
T Consensus 99 ~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~---t~g--n~n-----~~~G~~~~~----------------------- 145 (453)
T PRK10773 99 PARVVALTGSSGKTSVKEMTAAILRQCGNTLY---TAG--NLN-----NDIGVPLTL----------------------- 145 (453)
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHHhcCcccc---cCc--ccc-----CCcccccHH-----------------------
Confidence 46899999999999999999999999987532 332 121 223544421
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK--- 249 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik--- 249 (378)
.....++|++|+|+|+....+....+...+|+++|||||++||+|+|| |+|+|+++|+.|++
T Consensus 146 --------------~~~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~g-s~e~~~~aK~~l~~~~~ 210 (453)
T PRK10773 146 --------------LRLTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIFSGLP 210 (453)
T ss_pred --------------hcCCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcC-CHHHHHHHHHHHHcccC
Confidence 122356899999999865555555566667899999999999999997 89999999999995
Q ss_pred CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc--cccccccc
Q 017061 250 YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS--IELLDVKL 326 (378)
Q Consensus 250 ~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~l 326 (378)
+++.+|+| .|||....+.. .. ....+++|+.... ...++...++.....+ .+.+. .+..++.+
T Consensus 211 ~~g~~vln-~Dd~~~~~~~~-~~--~~~~~~~~g~~~~----------~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l 276 (453)
T PRK10773 211 ENGIAIMN-ADSNDWLNWQS-VI--GSKTVWRFSPNAA----------NSVDFTATNIHVTSHGTEFTLHTPTGSVDVLL 276 (453)
T ss_pred CCCEEEEE-CCcHhHHHHHH-Hh--cCCcEEEEeCCCC----------CcCcEEEEEEEEeCCeeEEEEEecCceEEEEe
Confidence 45789999 57776543322 11 1224555542100 0112222222221111 11111 12235889
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 327 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 327 ~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
|++|.||++|+++|++++..+ |++.+.|+++|++|.++|||++.+
T Consensus 277 ~l~G~hnv~NalaAia~a~~l-----Gi~~~~i~~~L~~~~~~~gR~e~v 321 (453)
T PRK10773 277 PLPGRHNIANALAAAALAMSV-----GATLDAVKAGLANLKAVPGRLFPI 321 (453)
T ss_pred cCCcHhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceeEE
Confidence 999999999999999999999 999999999999998899999875
No 16
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.8e-32 Score=270.57 Aligned_cols=206 Identities=22% Similarity=0.213 Sum_probs=150.4
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
..|+|+|||||||||||+||+++|+++|+++.+ ..| ||.|..+-
T Consensus 109 ~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~l-------------gGN-IG~p~l~~---------------------- 152 (448)
T COG0771 109 EAPIVAITGTNGKTTTTSLIAHLLKAAGLDALL-------------GGN-IGTPALEL---------------------- 152 (448)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHHhcCCCcee-------------ccc-cCccHHHh----------------------
Confidence 557999999999999999999999999999876 233 77777531
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~ 252 (378)
.-.....|++|+|+++.+. +.+.-+ +|+++|||||++||+|||| |+|+|+..|..|+....
T Consensus 153 --------------~~~~~~~d~~VlElSSfQL-~~~~~~---~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~ 213 (448)
T COG0771 153 --------------LEQAEPADVYVLELSSFQL-ETTSSL---RPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQT 213 (448)
T ss_pred --------------hcccCCCCEEEEEcccccc-ccCccC---CccEEEEecCCHHHhhhcc-CHHHHHHHHHHHHcCCc
Confidence 0113578999999999985 444434 4789999999999999997 99999999999998777
Q ss_pred -eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCch
Q 017061 253 -PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGN 331 (378)
Q Consensus 253 -~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~ 331 (378)
.+|+| .||+++..+..+. ..+.+.+++...... .+....++. + .+....-...-.++++|.
T Consensus 214 ~~~Vin-~dd~~~~~~~~~~---~~~~~~~fs~~~~~~--~~~~~~~~~------~------~~~~~~i~~~~~l~l~G~ 275 (448)
T COG0771 214 EVAVIN-ADDAYLKTLADEA---TKARVIWFSFGEPLA--DGDYIYDGK------L------VFKGEKLLPADELKLPGA 275 (448)
T ss_pred cEEEEe-CCcHHHhhhhhhc---ccceeEEEEcccccc--ccceeecch------h------ccccccccchhhcCCcch
Confidence 89999 6788654433322 334555554211100 000000000 0 000000011236899999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 332 HQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 332 hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
||+.|+++|+++|+.+ |++.+.|.++|.+|...|+|++.+
T Consensus 276 hn~~N~lAa~a~a~~~-----gv~~e~i~~~L~~F~gl~HR~e~v 315 (448)
T COG0771 276 HNLENALAALALARAL-----GVPPEAILEALSSFTGLPHRLEFV 315 (448)
T ss_pred hhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence 9999999999999999 999999999999999999999875
No 17
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.2e-32 Score=278.61 Aligned_cols=224 Identities=21% Similarity=0.213 Sum_probs=154.2
Q ss_pred HhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHH
Q 017061 86 RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDE 165 (378)
Q Consensus 86 ~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~ 165 (378)
.+-.|..+.++|+||||||||||++||+++|+..|.++++. +++|.|+..
T Consensus 114 ~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~--------------Gnig~~~~~---------------- 163 (480)
T PRK01438 114 RLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAV--------------GNIGTPVLD---------------- 163 (480)
T ss_pred HhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEE--------------CCccHHHHH----------------
Confidence 33334456789999999999999999999999999987652 113554431
Q ss_pred HHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHh
Q 017061 166 AIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKS 245 (378)
Q Consensus 166 ~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka 245 (378)
.+....+.|++|+|+|+++. +..+++ +|+++|||||++||+++|| |+|+|+.+|+
T Consensus 164 --------------------~~~~~~~~~~~V~E~ss~~l-~~~~~i---~P~iaVITNI~~DHld~lg-t~e~ia~~K~ 218 (480)
T PRK01438 164 --------------------AVRDPEGYDVLAVELSSFQL-HWSPSV---SPHSAAVLNLAPDHLDWHG-SMEAYAAAKA 218 (480)
T ss_pred --------------------HHhcCCCCCEEEEEcChHHh-CcCccc---CCCEEEEecCChhhccccC-CHHHHHHHHH
Confidence 01234568999999999875 344444 4799999999999999998 9999999999
Q ss_pred ccccCC-CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeeccccccccccc-c
Q 017061 246 GIIKYG-RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELL-D 323 (378)
Q Consensus 246 ~Iik~~-~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 323 (378)
+|+++. ..+|+| .|+|.+..++.+.+...++++++++...... ..+..... . ..+..+.... ........ .
T Consensus 219 ~I~~~~~~~~v~n-~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~-~~~~~~~~~~-~~~~~~~~~~ 291 (480)
T PRK01438 219 RIYEGTTVACVYN-VADPATEDLVEEADVVEGARAIGFTLGTPGP--SQLGVVDG--I-LVDRAFVEDR-QTSALELATL 291 (480)
T ss_pred HHHhCCCceEEEe-CCcHHHHHHHhhhcccCCceEEEEeCCCCCC--CCceEECC--E-EEEEeecccc-ccccceeeeH
Confidence 999875 567888 5788877766655544567777664210000 00000000 0 0000000000 00000000 1
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 324 VKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 324 i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
.+++++|.||++|+++|++++..+ +++.+.|+++|++|.++|||++.+
T Consensus 292 ~~l~l~G~hn~~Na~aAia~~~~l-----gi~~~~i~~~L~~~~~~~gR~E~i 339 (480)
T PRK01438 292 EDLRPAAPHNIANALAAAALARSF-----GVPPAAVRDGLRAFRPDAHRIEHV 339 (480)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence 358999999999999999999988 999999999999997788999865
No 18
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=1.1e-31 Score=269.48 Aligned_cols=213 Identities=27% Similarity=0.330 Sum_probs=166.5
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 017061 92 SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN 171 (378)
Q Consensus 92 ~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~ 171 (378)
.+.++|+||||+|||||+.|+++||+..| +| +.||+. | +|++|.|.+
T Consensus 101 ~~~kvIaITGS~GKTTTKe~la~iL~~~~-~v--~~t~gn--~-----Nn~iGlPlt----------------------- 147 (451)
T COG0770 101 FNAKVIAITGSNGKTTTKEMLAAILSTKG-KV--HATPGN--F-----NNEIGLPLT----------------------- 147 (451)
T ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHhhcC-eE--ecCCCc--c-----CccccchhH-----------------------
Confidence 46789999999999999999999999975 44 677763 3 355788876
Q ss_pred CCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc--
Q 017061 172 GCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK-- 249 (378)
Q Consensus 172 ~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik-- 249 (378)
.+....+.|++|+|+|+.+..|...+....+|+++|||||+.+|++++| |.|.|+++|+.|+.
T Consensus 148 --------------ll~~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fg-s~e~Ia~aK~Ei~~~~ 212 (451)
T COG0770 148 --------------LLRLPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG-SREGIAEAKAEILAGL 212 (451)
T ss_pred --------------HHhCCCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcC-CHHHHHHHHHHHHhcc
Confidence 2345567999999999999999998888889999999999999999998 79999999999995
Q ss_pred -CCCeEEEcCCCChhHHHHHHHHHHhh-CCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc--cccccc
Q 017061 250 -YGRPLVLGGPFLPHIEHILRDEASLM-CSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS--IELLDV 324 (378)
Q Consensus 250 -~~~~~V~~~~d~~~~~~vl~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i 324 (378)
+++.+|+| .|++. +...+.+. ..++++|+.. .+.++...++.....+ .+.+. .....+
T Consensus 213 ~~~g~ai~n-~d~~~----~~~~~~~~~~~~v~~fg~~------------~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~ 275 (451)
T COG0770 213 RPEGIAILN-ADNPL----LKNWAAKIGNAKVLSFGLN------------NGGDFRATNIHLDEEGSSFTLDIEGGEAEF 275 (451)
T ss_pred CCCcEEEEE-CccHH----HHHHHhhcCCCcEEEEcCC------------CCCceeeEEEEEcCCceEEEEEecCceEEE
Confidence 56779999 56675 23333322 4678887632 1223334444433332 12221 223369
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEE
Q 017061 325 KLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIF 374 (378)
Q Consensus 325 ~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~ 374 (378)
.+|++|+||+.|+++|+++|+.+ |++.+.|+++|+.+.+.+||++
T Consensus 276 ~l~~~G~hn~~NalaA~a~a~~l-----G~~~e~i~~~L~~~~~~~gR~~ 320 (451)
T COG0770 276 ELPLPGRHNVTNALAAAALALEL-----GLDLEEIAAGLKELKPVKGRLE 320 (451)
T ss_pred EecCCcHhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhcCCCCccce
Confidence 99999999999999999999999 9999999999999999999998
No 19
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.98 E-value=1.5e-31 Score=271.43 Aligned_cols=205 Identities=16% Similarity=0.122 Sum_probs=146.4
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (378)
Q Consensus 94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (378)
.++|+||||||||||++||++||+.+|+++.+- .| +|.|..
T Consensus 108 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~g-------------gn-ig~p~~------------------------- 148 (448)
T PRK03803 108 APVIAITGSNGKSTVTTLVGEMAKAAGKRVAVG-------------GN-IGTPAL------------------------- 148 (448)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEe-------------cC-cCHHHH-------------------------
Confidence 479999999999999999999999999876541 11 343321
Q ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCe
Q 017061 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP 253 (378)
Q Consensus 174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~ 253 (378)
.....+.|++|+|+|+.+. |.++.++ |+++|||||++||+|+|| |+|+|+++|++|+++.+.
T Consensus 149 -------------~~~~~~~~~~V~E~ss~~l-~~~~~~~---P~iaVITNI~~DHld~~g-s~e~~~~~K~~i~~~~~~ 210 (448)
T PRK03803 149 -------------DLLSDDPELYVLELSSFQL-ETTHSLN---AEVATVLNISEDHMDRYS-DLEAYHQAKHRIYRGAKQ 210 (448)
T ss_pred -------------HHhcCCCCEEEEEcChhhh-CcCcccC---ccEEEEecCChhHcccCC-CHHHHHHHHHHHHhCCCe
Confidence 0112357999999999864 6677665 689999999999999998 899999999999998888
Q ss_pred EEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhH
Q 017061 254 LVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQ 333 (378)
Q Consensus 254 ~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq 333 (378)
+|+| .|++.+..+. . ...++++|+...... ..+..... +. ..+.+. +. ......+.++++|.||
T Consensus 211 ~V~n-~dd~~~~~~~----~-~~~~~~~~g~~~~~~--~~~~~~~~-~~--~~~~~~--~~---~~~~~~~~l~l~G~Hn 274 (448)
T PRK03803 211 VVFN-RDDALTRPLV----P-DNQPCLSFGLNAPDF--DEWGLREG-DG--ETYLAH--GF---ERLMPVRELKLRGSHN 274 (448)
T ss_pred EEEe-CCCHHHHHHh----h-cCCcEEEEeCCCCCc--CceEEEec-CC--eEEEEe--CC---ceEEehhccCCCCHHH
Confidence 9999 5777654432 1 234666664211000 00000000 00 000000 00 0001136789999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 334 LHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 334 ~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
++|+++|++++..+ |++++.|+++|++|..+|+||+.+
T Consensus 275 ~~NalaAia~a~~l-----gi~~~~i~~~L~~f~g~~~R~e~v 312 (448)
T PRK03803 275 LANALAALALGEAA-----GLPKEAMLEVLRTFTGLPHRCEWV 312 (448)
T ss_pred HHHHHHHHHHHHHc-----CCCHHHHHHHHhhCCCCCCceEEE
Confidence 99999999999999 999999999999998899999875
No 20
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.98 E-value=4.7e-31 Score=271.18 Aligned_cols=235 Identities=23% Similarity=0.200 Sum_probs=157.8
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (378)
..+.+.++++.+++|..+.++|+||||||||||++||++||+.+|+++++. | ++.+..+...
T Consensus 103 ~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~~-----------------G-ni~~~~~~~~ 164 (498)
T PRK02006 103 EIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVAVA-----------------G-NISPAALDKL 164 (498)
T ss_pred HHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEEE-----------------C-CCCHHHHHHH
Confidence 466677778888887666689999999999999999999999999998751 1 2222211110
Q ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhc--CCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhc
Q 017061 156 FHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQN--HVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAAL 233 (378)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~--~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~l 233 (378)
. -.... ..|++|+|+++.+. +..+.+ +|+++|||||++||+|+|
T Consensus 165 ~------------------------------~~~~~~~~~~~~V~E~ss~~l-~~~~~~---~p~iaviTNI~~DHld~~ 210 (498)
T PRK02006 165 M------------------------------EAIDAGALPDVWVLELSSFQL-ETTHTL---APDAATVLNITQDHLDWH 210 (498)
T ss_pred H------------------------------HhhccCCCCcEEEEEccHHHh-Cccccc---CCCEEEEcCCChhhhccc
Confidence 0 01112 24899999998764 344444 479999999999999999
Q ss_pred CCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc
Q 017061 234 GGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER 313 (378)
Q Consensus 234 G~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (378)
| |+|+|+.+|++|+++++.+|+| .|||.+..+.... ...++++|+....... ..+........ .+.+....
T Consensus 211 g-s~e~y~~aK~~i~~~~~~~Vln-~dd~~~~~~~~~~---~~~~~~~~g~~~~~~~-~~~~~~~~~~~---~~~~~~~~ 281 (498)
T PRK02006 211 G-SMAAYAAAKARIFGPRTVRVLN-RDDARVMAMAPPG---GAADAVTFGLDEPAAD-GDYGLLRDNGM---AWLVEAED 281 (498)
T ss_pred C-CHHHHHHHHHHHcCCCCEEEEe-CCCHHHHHHhhcc---CCccEEEEeCCCcccc-ccceEEecCCe---EEEEecCc
Confidence 7 8999999999999988899999 5788765443221 1235566642110000 00000000000 00000000
Q ss_pred -ccccc-------c-----------ccc-ccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeE
Q 017061 314 -DLKLS-------I-----------ELL-DVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEI 373 (378)
Q Consensus 314 -~~~~~-------~-----------~~~-~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~ 373 (378)
.+.+. . ... .++++++|.||++|+++|++++..+ |++.+.|+++|++|..+||||
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~l-----gi~~~~i~~aL~~f~~~~gR~ 356 (498)
T PRK02006 282 RDAADPAPSRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAANALAALALARAI-----GLPAAPLLHGLREYRGEPHRV 356 (498)
T ss_pred ccccccccccccccccccccccchhceeeHhhcCCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhCCCCCCce
Confidence 00000 0 001 2568999999999999999999999 999999999999998899999
Q ss_pred EEe
Q 017061 374 FLM 376 (378)
Q Consensus 374 ~~~ 376 (378)
+.+
T Consensus 357 e~~ 359 (498)
T PRK02006 357 ELV 359 (498)
T ss_pred EEE
Confidence 875
No 21
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=2.4e-31 Score=269.70 Aligned_cols=206 Identities=15% Similarity=0.099 Sum_probs=148.0
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
+.++|+||||||||||++||+++|+.+|.++.+ .+++|.|++...
T Consensus 109 ~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~--------------~GniG~~~~~~~--------------------- 153 (445)
T PRK04308 109 GDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVI--------------AGNIGTPVLEAE--------------------- 153 (445)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEE--------------eCCccHHHHHHH---------------------
Confidence 347999999999999999999999999987643 222566553210
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~ 252 (378)
..-...++|++|+|+|+++ +|.++.++ |+++|||||++||+++|| |+|+|+.+|++|+++++
T Consensus 154 -------------~~~~~~~~d~~VlE~~~~~-l~~~~~~~---p~iaviTNI~~DHld~~~-t~e~~~~~K~~i~~~~~ 215 (445)
T PRK04308 154 -------------LQREGKKADVWVLELSSFQ-LENTESLR---PTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDG 215 (445)
T ss_pred -------------HhhcCCCCcEEEEEeChHH-hCcCcccC---CCEEEEecCChHHhcccC-CHHHHHHHHHHHhcCCC
Confidence 0001246899999999764 46666654 789999999999999997 99999999999999988
Q ss_pred eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchh
Q 017061 253 PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNH 332 (378)
Q Consensus 253 ~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~h 332 (378)
.+|+| .|+|..... . +.++++++|+.... . .+....... .+.+. +. .....+++|++|.|
T Consensus 216 ~~i~n-~dd~~~~~~----~-~~~~~v~~~~~~~~-~---d~~~~~~~~----~~~~~--~~----~~~~~~~l~l~G~h 275 (445)
T PRK04308 216 VQVLN-ADDAFCRAM----K-RAGREVKWFSLEHE-A---DFWLERETG----RLKQG--NE----DLIATQDIPLQGLH 275 (445)
T ss_pred EEEEe-CCcHHHHHH----h-hcCCcEEEecCCCC-C---ceeEeccCC----EEEEc--Cc----eeeehhccCCcChh
Confidence 99999 577754332 2 23467777652110 0 000000000 01110 00 00123578999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 333 QLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 333 q~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
|++|+++|++++..+ |++.+.|+++|++|.+||+||+.+
T Consensus 276 n~~NalaAia~a~~l-----gi~~~~i~~~L~~f~~~~~R~e~~ 314 (445)
T PRK04308 276 NAANVMAAVALCEAV-----GLPREALLEHVKTFQGLPHRVEKI 314 (445)
T ss_pred hHHHHHHHHHHHHHc-----CCCHHHHHHHHhhCCCCCCceEEE
Confidence 999999999999999 999999999999998899999865
No 22
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=3.1e-31 Score=268.34 Aligned_cols=204 Identities=18% Similarity=0.124 Sum_probs=147.1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
+.++|+||||||||||++||++||+.+|++++.- .| +|.|..
T Consensus 104 ~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~-------------gn-ig~p~~------------------------ 145 (438)
T PRK03806 104 QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVG-------------GN-IGLPAL------------------------ 145 (438)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEe-------------CC-cchhHH------------------------
Confidence 3479999999999999999999999999987641 11 243320
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~ 252 (378)
.....+.|++|+|+|+++. +.++.++ |+++|||||++||+|+||+|+|+|+++|++|++..+
T Consensus 146 --------------~~~~~~~~~~V~E~ss~~l-~~~~~~~---p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~~~ 207 (438)
T PRK03806 146 --------------SLLDQECELYVLELSSFQL-ETTSSLK---AAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK 207 (438)
T ss_pred --------------HhhccCCCEEEEEccchhh-ccCcccC---CCEEEEecCcHHHhccccCCHHHHHHHHHHHHhCCC
Confidence 1234567999999999874 5666654 789999999999999997799999999999999888
Q ss_pred eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchh
Q 017061 253 PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNH 332 (378)
Q Consensus 253 ~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~h 332 (378)
.+|+| .|+|.+..+. +...++++++..... +....... ..+.+.. + ......++++++|.|
T Consensus 208 ~~v~n-~dd~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~-~----~~~~~~~~l~l~G~h 268 (438)
T PRK03806 208 VCVVN-ADDALTMPIR-----GADKRCVSFGVNMGD-----YHLNRQQG---ETWLRVK-G----EKVLNTKEMKLSGQH 268 (438)
T ss_pred eEEEe-CCCHHHHHHh-----cCCceEEEEecCCCc-----eEEEecCC---eEEEEec-C----ceeeehhhcCCcccc
Confidence 99999 5777654421 123455555421100 00000000 0000000 0 000124678999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 333 QLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 333 q~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
|++|+++|++++..+ +++.+.|+++|++|.+|||||+.+
T Consensus 269 n~~Na~aAia~a~~l-----gi~~~~i~~~L~~f~~~~gR~E~v 307 (438)
T PRK03806 269 NYTNALAALALADAV-----GIPRASSLKALTTFTGLPHRFQLV 307 (438)
T ss_pred cHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCeEEEE
Confidence 999999999999999 999999999999998999999865
No 23
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=3.8e-31 Score=269.15 Aligned_cols=211 Identities=20% Similarity=0.131 Sum_probs=147.4
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
+.++|+||||||||||++||+++|+.+|+++.. ..| +|.|++....
T Consensus 108 ~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~-------------~gn-iG~~~~~~~~-------------------- 153 (459)
T PRK02705 108 HIPWVGITGTNGKTTVTALLAHILQAAGLNAPA-------------CGN-IGYAACELAL-------------------- 153 (459)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEE-------------ecc-cChhHHHHHh--------------------
Confidence 457999999999999999999999999987654 112 4665542100
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~ 252 (378)
+......+.|++|+|+|++ .+|.++.+ +|+++|||||++||+++|| |+|+|+.+|++|+++++
T Consensus 154 ------------~~~~~~~~~d~~VlE~~s~-~l~~~~~~---~p~iaVITNI~~DHld~~g-t~e~~~~~K~~i~~~~~ 216 (459)
T PRK02705 154 ------------LRSGKAQKPDWIVAELSSY-QIESSPEL---APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSE 216 (459)
T ss_pred ------------hhhccCCCCCEEEEEcccc-ccccCccc---CCCEEEEecCChhhhcccC-CHHHHHHHHHHHhccCC
Confidence 0011245789999999986 46666664 4799999999999999998 99999999999999989
Q ss_pred eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccccccc-ccccCCCc
Q 017061 253 PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLSIELL-DVKLCMIG 330 (378)
Q Consensus 253 ~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~i~l~l~G 330 (378)
++|+| .|+|.+..+. .+.. ..++++..... .++...+..+...+ .+....... .+.++++|
T Consensus 217 ~~Vln-~dd~~~~~~~----~~~~-~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G 279 (459)
T PRK02705 217 IRILN-GDDPYLRQHR----SSWP-KGYWTSTQGKA-----------SLLGQADGWILEEGWVVERGEPLFPLSALKMPG 279 (459)
T ss_pred EEEEE-CCCHHHHHHH----hcCC-ceEEeccCCcc-----------ccccccceeEecCCEEEECCcceeeHHHcCCcc
Confidence 99999 5777654442 2222 22444311000 00000000000000 000000011 24689999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 331 NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 331 ~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
.||++|+++|++++..+ +++.+.|.++|++|..|||||+.+
T Consensus 280 ~hn~~NalaAia~a~~l-----gv~~~~i~~~L~~f~~~~gR~e~~ 320 (459)
T PRK02705 280 AHNLQNLLLAVAAARLA-----GLSAEAIAEALRSFPGVPHRLERI 320 (459)
T ss_pred HHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence 99999999999999999 999999999999998999999864
No 24
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=99.97 E-value=7.3e-31 Score=265.21 Aligned_cols=200 Identities=24% Similarity=0.237 Sum_probs=145.7
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
+.++|+||||||||||++||+++|+.+|+++.+- .| +|.|...
T Consensus 101 ~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~-------------gn-ig~~~~~----------------------- 143 (433)
T TIGR01087 101 PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLG-------------GN-IGTPALE----------------------- 143 (433)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEE-------------Cc-cCHHHHH-----------------------
Confidence 3579999999999999999999999999886431 11 3433210
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccC--
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-- 250 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~-- 250 (378)
.+...+.|++|+|+|+++ ++.++.+ +|+++|||||++||+|+|| |+|+|+.+|++|++.
T Consensus 144 --------------~~~~~~~~~~V~E~~~~~-l~~~~~~---~p~iaViTNI~~DHld~~g-s~e~~~~~K~~i~~~~~ 204 (433)
T TIGR01087 144 --------------VLDQEGAELYVLELSSFQ-LETTESL---RPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQT 204 (433)
T ss_pred --------------HHhccCCCEEEEEcChhH-hcCCccc---CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCC
Confidence 111157899999999775 3555555 4789999999999999998 899999999999974
Q ss_pred -CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCC
Q 017061 251 -GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMI 329 (378)
Q Consensus 251 -~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~ 329 (378)
++.+|+| .|++.. ...+...++++++|+... ..+. .+.... +...+ ...+++++++
T Consensus 205 ~~~~~i~n-~dd~~~----~~~~~~~~~~~~~~g~~~------------~~~~---~~~~~~-~~~~~--~~~~~~l~l~ 261 (433)
T TIGR01087 205 EGDVAVLN-ADDPRF----ARLAQKSKAQVIWFSVEK------------DAER---GLCIRD-GGLYL--KPNDLEGSLL 261 (433)
T ss_pred CCCEEEEE-CCCHHH----HHhhhhcCceEEEEeCCc------------cCCC---ceEEEC-CEEEE--eccccccCCC
Confidence 4588999 466643 333444466787775211 0000 011110 00001 0113778999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 330 GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 330 G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
|.||++|+++|++++..| |++.+.|+++|++|..+|+||+.+
T Consensus 262 G~hn~~Na~aAia~a~~l-----gi~~~~i~~~L~~f~g~~~R~e~v 303 (433)
T TIGR01087 262 GLHNAENILAAIALAKSL-----GLNLEAILEALRSFKGLPHRLEYV 303 (433)
T ss_pred cHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence 999999999999999999 999999999999998899999865
No 25
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=1.2e-30 Score=264.79 Aligned_cols=209 Identities=19% Similarity=0.158 Sum_probs=145.9
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
+.++|+||||||||||++||++||+.+|+++.+ . +++|.|...
T Consensus 103 ~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~-------------~-GniG~p~l~----------------------- 145 (454)
T PRK01368 103 NLKFIAITGTNGKSTTTALISHILNSNGLDYPV-------------A-GNIGVPALQ----------------------- 145 (454)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEE-------------E-ccCCHHHhc-----------------------
Confidence 457999999999999999999999999988654 1 224554321
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccC--
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-- 250 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~-- 250 (378)
...+.|++|+|+|+++. +.. ...+|+++|||||++||+|+|| |+|+|+.+|..|++.
T Consensus 146 ----------------~~~~~~~~VlE~ss~ql-~~~---~~~~P~iavitNI~~DHLd~~~-s~e~y~~aK~~i~~~~~ 204 (454)
T PRK01368 146 ----------------AKASKDGYVLELSSFQL-DLV---KTFTAKIAVLLNITPDHLDRHQ-DMDGYIAAKSKIFDRMD 204 (454)
T ss_pred ----------------ccCCCCEEEEEcCchhh-ccc---cccCCCEEEEecCChhHhhccC-CHHHHHHHHHHHHhcCC
Confidence 12346999999999985 222 3345899999999999999997 999999999999953
Q ss_pred -CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCC
Q 017061 251 -GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMI 329 (378)
Q Consensus 251 -~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~ 329 (378)
++.+|+| .||+....+.........+++++|+..... ..++.... ..+.+..... . .....+.++++
T Consensus 205 ~~~~~Vln-~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~--~~~~~~~~------~~~~~~~~~~--~-~~~~~~~~~l~ 272 (454)
T PRK01368 205 KDSYAVIN-IDNDYCREIFIKLQQEQRIKLIPFSVTKIL--ENGISVVD------DKISDNFFDD--I-SFKLPFNKNLQ 272 (454)
T ss_pred CCCEEEEe-CCcHHHHHHHHHhhcccCceEEEEeCCccc--CCCcEEEC------CEEEEEecCC--c-ceEEEecCCCC
Confidence 5678999 577866544332211123466666521100 00000000 0000000000 0 01234667899
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 330 GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 330 G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
|.||++|+++|++++..+ +++.+.|.++|++|.+|||||+.+
T Consensus 273 G~hn~~Na~aAia~~~~l-----gi~~~~i~~~L~~F~~~~~Rle~v 314 (454)
T PRK01368 273 GKHNCENIAASYAVAKII-----GVEPKKILESISSFQSLPHRMQYI 314 (454)
T ss_pred chhhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence 999999999999999999 999999999999999999999875
No 26
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.97 E-value=9.7e-31 Score=283.27 Aligned_cols=231 Identities=13% Similarity=0.169 Sum_probs=160.4
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHH
Q 017061 78 GRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFH 157 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~ 157 (378)
+.+..+.+.+ .++.+.++|+||||||||||+.||+++|+..|..++ ++. +++ +++|.|.+
T Consensus 92 ~al~~la~~~-~~~~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~---~~~--~~n-----~~ig~p~~--------- 151 (822)
T PRK11930 92 KALQELAAYH-RSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVR---SPR--SYN-----SQIGVPLS--------- 151 (822)
T ss_pred HHHHHHHHHH-HHhCCCCEEEEeCCCcHHHHHHHHHHHHhccCcEec---CCc--ccC-----cchhHHHH---------
Confidence 3344444333 256778999999999999999999999998775443 221 111 22344432
Q ss_pred HHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCH
Q 017061 158 KIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSL 237 (378)
Q Consensus 158 ~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tl 237 (378)
.+....++|++|+|+|+++..+...+....+|+++|||||++||+|+|| |+
T Consensus 152 ----------------------------~~~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~g-t~ 202 (822)
T PRK11930 152 ----------------------------VWQLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFR-SI 202 (822)
T ss_pred ----------------------------HhcCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcC-CH
Confidence 1123467899999999888777665544456899999999999999997 99
Q ss_pred HHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccc
Q 017061 238 ETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLK 316 (378)
Q Consensus 238 e~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (378)
|+|+++|+.||+..+.+|+| .|++....++.... ...++++|+... ...++...++.....+ .+.
T Consensus 203 e~y~~aK~~i~~~~~~~vin-~Dd~~~~~~~~~~~--~~~~~~~~g~~~-----------~~~d~~~~~i~~~~~~~~~~ 268 (822)
T PRK11930 203 KQKIMEKLKLFKDCDVIIYN-GDNELISSCITKSN--LTLKLISWSRKD-----------PEAPLYIPFVEKKEDHTVIS 268 (822)
T ss_pred HHHHHHHHHHhcCCCEEEEe-CCCHHHHHHHHhhh--cCCcEEEEcCCC-----------CCCcEEEEEEEEcCCceEEE
Confidence 99999999999887888999 57776654433221 123455554210 0011211122111111 111
Q ss_pred cc--ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 317 LS--IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 317 ~~--~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
+. .....+.+|++|.||++|+++|++++..+ |++.+.|.++|++|.++||||+.+
T Consensus 269 ~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l-----Gi~~~~i~~~L~~f~~~~gR~e~~ 325 (822)
T PRK11930 269 YTYKGEDFHFEIPFIDDASIENLIHCIAVLLYL-----GYSADQIQERMARLEPVAMRLEVK 325 (822)
T ss_pred EEeCCceEEEEecCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCeeEEE
Confidence 11 12245889999999999999999999999 999999999999998899999875
No 27
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=4.8e-30 Score=260.18 Aligned_cols=205 Identities=20% Similarity=0.151 Sum_probs=144.7
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
+.++|+||||||||||++||+++|+.+|+++.+. .| +|.|.+..
T Consensus 107 ~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~-------------Gn-ig~p~~~~---------------------- 150 (447)
T PRK02472 107 EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLA-------------GN-IGYPASEV---------------------- 150 (447)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEE-------------cc-cChhhHHH----------------------
Confidence 3579999999999999999999999999876431 12 46555320
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCC-
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG- 251 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~- 251 (378)
.-...+.|++|+|+++.+.. ... ..+|+++|||||++||+++|| |+|+|+.+|++|+++.
T Consensus 151 --------------~~~~~~~~~~V~E~ss~~~~-~~~---~~~P~iaVITnI~~DHld~~g-t~e~i~~~K~~i~~~~~ 211 (447)
T PRK02472 151 --------------AQKATADDTLVMELSSFQLM-GIE---TFRPHIAVITNIYPAHLDYHG-TFENYVAAKWNIQKNQT 211 (447)
T ss_pred --------------HhcCCCCCEEEEEcCchhhC-ccc---ccCCCEEEEeccChhhhcccC-CHHHHHHHHHHHHhcCC
Confidence 01124579999999988743 233 335799999999999999998 9999999999999754
Q ss_pred --CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCC
Q 017061 252 --RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMI 329 (378)
Q Consensus 252 --~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~ 329 (378)
+.+|+| .|+|.+. ..+++..+++++++.... .. .......+ .+.+. +. .....++++++
T Consensus 212 ~~~~~v~n-~dd~~~~----~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~------~~~~~--~~----~~~~~~~l~l~ 272 (447)
T PRK02472 212 EDDYLVIN-FDQEEVK----ELAKQTKATVVPFSTTEK-VE-DGAYIKDG------ALYFK--GE----KIMAADDIVLP 272 (447)
T ss_pred CCCEEEEe-CCcHHHH----HHHhhcCceEEEeecCCC-Cc-CceEEECC------EEEEC--Cc----eEEehhhcCCC
Confidence 458998 5677553 333344556776642110 00 00000000 01110 00 00112468999
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 330 GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 330 G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
|.||++|+++|++++..| |++.+.|+++|++|.+||+||+.+
T Consensus 273 G~hn~~Na~aAia~~~~l-----gi~~~~i~~~L~~f~~~~~R~e~~ 314 (447)
T PRK02472 273 GSHNLENALAAIAAAKLL-----GVSNEAIREVLSTFSGVKHRLQYV 314 (447)
T ss_pred CHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCcceEE
Confidence 999999999999999999 999999999999998899999865
No 28
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=5.3e-30 Score=262.48 Aligned_cols=204 Identities=18% Similarity=0.131 Sum_probs=141.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 017061 95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI 174 (378)
Q Consensus 95 ~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (378)
++|+||||||||||++||+++|+.+|+++.+. +++|.|+..
T Consensus 118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~--------------GniG~p~~~------------------------- 158 (488)
T PRK03369 118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLC--------------GNIGSPVLD------------------------- 158 (488)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHcCCceEEe--------------CCCchHHHH-------------------------
Confidence 69999999999999999999999999876542 225666521
Q ss_pred CHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeE
Q 017061 175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPL 254 (378)
Q Consensus 175 t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~ 254 (378)
....+.|++|+|+|+.+. +. +...+|+++|||||++||+|+|| |+|+|+.+|++||+. +++
T Consensus 159 -------------~~~~~~~~~VlE~ss~ql-~~---~~~~~P~vaVITNI~~DHLd~~g-t~e~ya~aK~~I~~~-~~~ 219 (488)
T PRK03369 159 -------------VLDEPAELLAVELSSFQL-HW---APSLRPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTG-RVA 219 (488)
T ss_pred -------------hccCCCCEEEEECChHHh-Cc---ccccCCCEEEEcCCCHHHhhhcC-CHHHHHHHHHHHhcC-CEE
Confidence 113578999999998864 22 33446899999999999999998 999999999999984 788
Q ss_pred EEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeeccccccccc-ccccccCCCchhH
Q 017061 255 VLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIE-LLDVKLCMIGNHQ 333 (378)
Q Consensus 255 V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~l~G~hq 333 (378)
|+| .||+.+..+.. .+. ....+.++.... ...++...+..... ..+..... ...++++++|.||
T Consensus 220 Vln-~dd~~~~~~~~-~~~--~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~l~G~hn 284 (488)
T PRK03369 220 VVG-LDDSRAAALLD-TAP--APVRVGFRLGEP----------AAGELGVRDGHLVD-RAFADDLRLAPVASIPVPGPVG 284 (488)
T ss_pred EEE-CCCHHHHHHHH-hCC--CcEEEEEeCCCC----------CcCCceEECCEEEE-eccCCccceechhhcCCCcHhH
Confidence 999 57776544322 111 112232211000 00000000000000 00000000 1136789999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 334 LHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 334 ~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
++|+++|++++..+ |++.+.|+++|++|.+.|||++.+
T Consensus 285 v~NalaAla~a~~l-----Gi~~e~i~~~L~~f~~~~gR~E~v 322 (488)
T PRK03369 285 VLDALAAAALARAV-----GVPAGAIADALASFRVGRHRAEVV 322 (488)
T ss_pred HHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCccEEE
Confidence 99999999999999 999999999999997669999865
No 29
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=4e-30 Score=260.29 Aligned_cols=201 Identities=15% Similarity=0.128 Sum_probs=143.7
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (378)
Q Consensus 94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (378)
.++|+||||||||||++||+++|+.+|.++++- .| +|.|..
T Consensus 108 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~-------------gn-iG~~~~------------------------- 148 (438)
T PRK04663 108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVG-------------GN-IGVPAL------------------------- 148 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEE-------------cc-cCHHHH-------------------------
Confidence 479999999999999999999999999887541 12 344321
Q ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCe
Q 017061 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP 253 (378)
Q Consensus 174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~ 253 (378)
.....+.|++|+|+|+.+. +.. ...+|+++|||||++||+|+|| |+|+|+++|..|++..+.
T Consensus 149 -------------~~~~~~~~~~V~E~ss~~l-~~~---~~~~p~iavitNi~~dHld~~g-s~e~y~~aK~~i~~~~~~ 210 (438)
T PRK04663 149 -------------DLLEQDAELYVLELSSFQL-ETT---SSLKLKAAAFLNLSEDHMDRYQ-GMEDYRQAKLRIFDHAEL 210 (438)
T ss_pred -------------hhhcCCCCEEEEEcChhhh-ccC---cccCCCEEEEecCChhhCcccC-CHHHHHHHHHHHHhCCCE
Confidence 1223567999999999975 222 3345899999999999999997 999999999999987678
Q ss_pred EEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhH
Q 017061 254 LVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQ 333 (378)
Q Consensus 254 ~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq 333 (378)
+|+| .|||..... .. ..++++|+..... +...... ...+.+.. + ......+.++++|.||
T Consensus 211 ~v~n-~dd~~~~~~----~~--~~~~~~~g~~~~~-----~~~~~~~---~~~~~~~~-~----~~~~~~~~l~l~G~hN 270 (438)
T PRK04663 211 AVVN-RDDKQTYPD----HA--ELQLVTFGFDQQD-----FGLAQHQ---GREWLADN-G----QPVLASAELKLVGRHN 270 (438)
T ss_pred EEEe-CCCHHHHhh----hc--CCcEEEEecCCCC-----CCeEecC---CeEEEEeC-C----ceeeehhhcCCcchhh
Confidence 8999 577754221 11 3456666521100 0000000 00011100 0 0011247789999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 334 LHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 334 ~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
++|+++|++++..+ |++.+.|+++|++|.++++|++.+
T Consensus 271 v~NalaAia~a~~l-----Gi~~~~i~~~L~~f~g~~~R~e~v 308 (438)
T PRK04663 271 VANVLVVLALLDAA-----GVDYRKALDALKSYTGLTHRCQVV 308 (438)
T ss_pred HHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEe
Confidence 99999999999999 999999999999998899998864
No 30
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=99.97 E-value=5.2e-30 Score=260.15 Aligned_cols=207 Identities=18% Similarity=0.151 Sum_probs=143.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 017061 95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI 174 (378)
Q Consensus 95 ~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (378)
++|+||||||||||++||+++|+.+|++++.++-. ..+++|.|..
T Consensus 103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~---------~~gn~G~~~~-------------------------- 147 (448)
T TIGR01081 103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGG---------VPGNFGVSAR-------------------------- 147 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCc---------ccccCccccc--------------------------
Confidence 49999999999999999999999999987532110 0111243331
Q ss_pred CHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCccccccccc--CCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc--C
Q 017061 175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISS--SGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK--Y 250 (378)
Q Consensus 175 t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~--~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik--~ 250 (378)
. .+.|++|+|+|+.+..+...+.+. .+|+++|||||++||+|+|+ |+|+|+.+|++|++ +
T Consensus 148 -------------~--~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~-t~e~~~~~K~~i~~~~~ 211 (448)
T TIGR01081 148 -------------L--GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFD-DLKAIQRQFHHLVRTVP 211 (448)
T ss_pred -------------c--CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccC-CHHHHHHHHHHHHHhCC
Confidence 1 347999999999987655444333 46899999999999999995 99999999999997 2
Q ss_pred -CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeeccccccc--c-ccccccc
Q 017061 251 -GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLS--I-ELLDVKL 326 (378)
Q Consensus 251 -~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~l 326 (378)
.+.+|+| .|++.+..++.+. ...++.+++... ++....+... ...+.+. . ....+.+
T Consensus 212 ~~~~~i~n-~dd~~~~~~~~~~---~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 272 (448)
T TIGR01081 212 GEGLILCP-GRDQSLKDTLAKG---CWSEQEFFGEQG--------------EWQAEKITAD-GSHFDVLLDGEKVGEVKW 272 (448)
T ss_pred CCCEEEEe-CCCHHHHHHHHhc---cCCCeEEECCCC--------------CEEEEEEecC-CcEEEEEECCceeEEEEe
Confidence 4578888 5777665443321 122344443110 0000000000 0000010 0 1124678
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 327 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 327 ~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
+++|.||+.|+++|++++..+ +++.+.|.++|++|.+||||++.+
T Consensus 273 ~l~G~hn~~Na~~A~a~~~~l-----gi~~~~i~~~L~~~~~~~~R~e~~ 317 (448)
T TIGR01081 273 SLVGRHNMHNALMAIAAARHV-----GVAIEDACEALGSFVNAKRRLELK 317 (448)
T ss_pred cCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence 999999999999999999999 999999999999998899999875
No 31
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.97 E-value=8e-30 Score=259.69 Aligned_cols=205 Identities=19% Similarity=0.162 Sum_probs=140.9
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (378)
Q Consensus 94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (378)
.++|+||||||||||++||++||+.+|+++..+..- .++.+|.+.
T Consensus 107 ~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg---------~~~~~~~~~-------------------------- 151 (461)
T PRK00421 107 RTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGG---------ILNAAGTNA-------------------------- 151 (461)
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECc---------eeccCCccc--------------------------
Confidence 379999999999999999999999999753332110 011112111
Q ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccc---cC
Q 017061 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII---KY 250 (378)
Q Consensus 174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Ii---k~ 250 (378)
...+.|++|+|+|+.+.. +...+|+++|||||++||+|+|| |+|+|+++|..++ ++
T Consensus 152 ---------------~~~~~~~~V~E~ss~q~~-----~~~~~p~vaViTNI~~DHld~~g-t~e~y~~ak~k~~~~~~~ 210 (461)
T PRK00421 152 ---------------RLGNSDYFVAEADESDRS-----FLKLHPDIAIVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPF 210 (461)
T ss_pred ---------------ccCCCCEEEEECCCccch-----HhhcCCCEEEEccCChhhccccC-CHHHHHHHHHHHHhcCCC
Confidence 114579999999988642 22345899999999999999998 9999998887765 55
Q ss_pred CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc--cc-cccccc
Q 017061 251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS--IE-LLDVKL 326 (378)
Q Consensus 251 ~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-~~~i~l 326 (378)
++.+|+| .|++.+..+.. +..+++++|+... ..++...++...... .+.+. .. ...+.+
T Consensus 211 ~~~~V~n-~dd~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l 273 (461)
T PRK00421 211 YGALVAC-GDDPELRELLP----RVSRPVITYGFSE------------DADFRAENIRQDGGGTHFDVLRRGEVLGDFTL 273 (461)
T ss_pred CCEEEEE-CCCHHHHHHHH----hcCCCEEEecCCC------------CCcEEEEEEEEcCCceEEEEEECCceEEEEEe
Confidence 6788999 57776654432 2345677765211 001111011000000 01110 01 114678
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 327 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 327 ~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
+++|.||++|+++|++++..+ +++.+.|.++|++|..|||||+.+
T Consensus 274 ~l~G~h~~~N~~aA~a~~~~l-----gv~~~~i~~~l~~f~~~~~R~e~~ 318 (461)
T PRK00421 274 PLPGRHNVLNALAAIAVALEL-----GIDDEAIREALATFKGVKRRFEEK 318 (461)
T ss_pred cCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCcccEEE
Confidence 999999999999999999999 999999999999998899999875
No 32
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=8e-30 Score=258.77 Aligned_cols=208 Identities=20% Similarity=0.162 Sum_probs=145.6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (378)
Q Consensus 94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (378)
.++|+||||||||||++||+++|+..|.++++. .| +|.|+...
T Consensus 108 ~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~-------------g~-ig~~~~~~----------------------- 150 (450)
T PRK14106 108 APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVA-------------GN-IGYPLIDA----------------------- 150 (450)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEe-------------Cc-ccHHHHHH-----------------------
Confidence 689999999999999999999999999776541 11 34443210
Q ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccC---
Q 017061 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--- 250 (378)
Q Consensus 174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~--- 250 (378)
.....+.|++|+|+|+.+... +...+|+++|||||++||+++|| |+|+|+.+|++|+++
T Consensus 151 -------------~~~~~~~~~~v~E~~~~~~~~----~~~~~P~i~VITnI~~dHl~~~g-t~e~ia~~K~~i~~~~~~ 212 (450)
T PRK14106 151 -------------VEEYGEDDIIVAEVSSFQLET----IKEFKPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRP 212 (450)
T ss_pred -------------HhcCCCCCEEEEEcChhhhcc----ccccCCCEEEEecCCcchhcccC-CHHHHHHHHHHHHhCCCC
Confidence 011236899999999875431 33445899999999999999998 999999999999975
Q ss_pred CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCc
Q 017061 251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIG 330 (378)
Q Consensus 251 ~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G 330 (378)
.+.+++| .|+|. +...+.+.++++++++.... ......+....+.+...+. ... ....+.+|++|
T Consensus 213 ~~~~vln-~d~~~----~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~G 277 (450)
T PRK14106 213 SDYTVLN-YDDPR----TRSLAKKAKARVIFFSRKSL--------LEEGVFVKNGKIVISLGGK-EEE-VIDIDEIFIPG 277 (450)
T ss_pred CCEEEEe-CCcHH----HHHHHhhcCceEEEEecCcc--------CcCceEEECCEEEEecCCC-cce-EEEHHHcCCCC
Confidence 4568888 56664 34445556778887763210 0000000000111110000 000 00124789999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 331 NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 331 ~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
.||++|+++|+++++.| |++++.|+++|++|.+|||||+.+
T Consensus 278 ~h~~~Na~aAia~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~i 318 (450)
T PRK14106 278 EHNLENALAATAAAYLL-----GISPDVIANTLKTFKGVEHRIEFV 318 (450)
T ss_pred HHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence 99999999999999999 999999999999998899999976
No 33
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=7.9e-30 Score=251.81 Aligned_cols=220 Identities=22% Similarity=0.221 Sum_probs=158.3
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (378)
+.|...|.+.+. ....|+|+||+||||||+||+++|.++|+.++.. ++ |. +....
T Consensus 94 ~~r~e~Laelm~----~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~-------------iG--G~-~~~~g----- 148 (459)
T COG0773 94 ISRAEMLAELMR----FRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFL-------------IG--GI-LKNFG----- 148 (459)
T ss_pred EcHHHHHHHHHh----CCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEE-------------EC--cc-cccCC-----
Confidence 344444444442 3578999999999999999999999999988763 22 21 11000
Q ss_pred HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCC
Q 017061 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS 236 (378)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~t 236 (378)
.-......+|.|+|++.. |...+ ..+|.++|||||+.||+|+|| +
T Consensus 149 -----------------------------~na~~g~~~~fV~EADEs---D~sFl--~~~P~~aIvTNid~DH~D~y~-~ 193 (459)
T COG0773 149 -----------------------------TNARLGSGDYFVAEADES---DSSFL--HYNPRVAIVTNIEFDHLDYYG-D 193 (459)
T ss_pred -----------------------------cccccCCCceEEEEeccc---ccccc--cCCCCEEEEeCCCcchhhhhC-C
Confidence 001123458999999844 44443 456999999999999999997 9
Q ss_pred HHHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc
Q 017061 237 LETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER 313 (378)
Q Consensus 237 le~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (378)
++++.+....+++ ..+.+|++ .|||..++++... .+.++++|+... ..++++.++.....+
T Consensus 194 ~~~i~~~F~~f~~~vp~~G~~v~~-~dd~~l~~l~~~~---~~~~v~tyG~~~------------~ad~~a~ni~~~~~~ 257 (459)
T COG0773 194 LEAIKQAFHHFVRNVPFYGRAVVC-GDDPNLRELLSRG---CWSPVVTYGFDD------------EADWRAENIRQDGSG 257 (459)
T ss_pred HHHHHHHHHHHHHhCCccceEEEE-CCCHHHHHHHhcc---cCCcEEeecCCC------------cCcEEEEEeEEeccc
Confidence 9999998877774 45667888 5889776665543 466788875321 134444444443332
Q ss_pred -cccc--c-ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEecC
Q 017061 314 -DLKL--S-IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG 378 (378)
Q Consensus 314 -~~~~--~-~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~g 378 (378)
.|.+ . ....++.+|++|+||+.||++|+++|..+ |++.+.|+++|++| .+.+|||+++|
T Consensus 258 ~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia~a~~~-----Gi~~~~i~~aL~~F-~GvkRRfe~~g 320 (459)
T COG0773 258 TTFDVLFRGEELGEVKLPLPGRHNVLNALAAIAVAREL-----GIDPEAIAEALASF-QGVKRRFELKG 320 (459)
T ss_pred cEEEEEEcCceeEEEEEcCCchhhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhC-CCcceeeEEee
Confidence 1222 1 13567999999999999999999999999 99999999999999 79999999765
No 34
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=1.4e-29 Score=258.10 Aligned_cols=201 Identities=21% Similarity=0.190 Sum_probs=144.6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (378)
Q Consensus 94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (378)
.++|+||||||||||++||++||+.+|.++.+ .+++|.|+.+.
T Consensus 115 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~--------------~GniG~p~~~~----------------------- 157 (468)
T PRK04690 115 PGTVCVTGTKGKSTTTALLAHLLRAAGHRTAL--------------VGNIGVPLLEV----------------------- 157 (468)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEE--------------cCCCCcchHHH-----------------------
Confidence 47999999999999999999999999987654 12246665320
Q ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCC--
Q 017061 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG-- 251 (378)
Q Consensus 174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~-- 251 (378)
.....+.|++|+|+|+++..+.... ..+|+++|||||++||+|+|| |+++|..+|++|++..
T Consensus 158 -------------~~~~~~~~~~VlE~ss~q~~~~~~~--~~~P~iaVItNI~~DHld~~g-s~e~y~~aK~~i~~~~~~ 221 (468)
T PRK04690 158 -------------LAPQPAPEYWAIELSSYQTGDVARS--GARPELAVVLNLFPEHLDWHG-GEARYYRDKLSLVTEGRP 221 (468)
T ss_pred -------------hccCCCCcEEEEEecCCcccccccc--cCCCCEEEEcCCCHHHhcccC-CHHHHHHHHHHHHhCCCC
Confidence 0112457999999999887554432 245899999999999999997 8999999999999753
Q ss_pred CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCch
Q 017061 252 RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGN 331 (378)
Q Consensus 252 ~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~ 331 (378)
..+|+| .|++..... .....++++|+... ++.. ..++.+.. .. .....+.++++|.
T Consensus 222 ~~~v~n-~dd~~~~~~-----~~~~~~v~~~~~~~------~~~~-------~~~~~~~~-~~----~~~~~~~~~l~G~ 277 (468)
T PRK04690 222 RIALLN-AADPRLAAL-----QLPDSEVVWFNHPD------GWHV-------RGDVVYRG-EQ----ALFDTALVPLPGR 277 (468)
T ss_pred CeEEEe-CccHHHHHH-----hcCCCeEEEeeCCc------ccee-------cceEEEcC-Cc----eEEeeccccCccH
Confidence 567888 567754322 12235666664210 0000 00111110 00 0112357889999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 332 HQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 332 hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
||+.|+++|++++..| +++.+.|+++|++|.+|||||+.+
T Consensus 278 h~~~Na~~A~a~~~~l-----gi~~~~i~~~l~~~~~~~gR~e~~ 317 (468)
T PRK04690 278 HNRGNLCAVLAALEAL-----GLDAVALAPAAAGFRPLPNRLQEL 317 (468)
T ss_pred hhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCcEEE
Confidence 9999999999999999 999999999999998899999875
No 35
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.6e-29 Score=253.68 Aligned_cols=247 Identities=19% Similarity=0.171 Sum_probs=176.5
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHH
Q 017061 80 MNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKI 159 (378)
Q Consensus 80 ~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~ 159 (378)
....+..+++|+.++++|+||||||||||++++.++++..|++++++++-.- .++ .|...
T Consensus 77 ~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~-------~~~-~~~~~------------ 136 (475)
T COG0769 77 TTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGD-------ELS-PGILE------------ 136 (475)
T ss_pred HHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEee-------ecc-CCccc------------
Confidence 4456677899998899999999999999999999999999999998765321 010 01111
Q ss_pred HHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHH
Q 017061 160 KGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLET 239 (378)
Q Consensus 160 ~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ 239 (378)
..+..+|..++++.. |.-+.+..++++|+|+++++. .+..+..+.++++++||++.||+|++| |+|+
T Consensus 137 --------~~~~tTP~~~~l~~~--~~~~~d~~~e~~vmEvssh~l--~~~Rv~~~~f~v~~ftnls~DHlD~h~-t~e~ 203 (475)
T COG0769 137 --------PTGLTTPEALDLQNL--LRDLLDRGAEIAVMEVSSHGL--VQGRVEGVTFDVGVFTNLSRDHLDYHG-TMEY 203 (475)
T ss_pred --------ccCCCCccHHHHHHH--HHHHHHcCCcEEEEEeehhHH--HhCCccCceEEEEeccccCchhhcccC-cHHH
Confidence 012334444444433 344678999999999999986 566677767889999999999999885 9999
Q ss_pred HHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc---
Q 017061 240 IAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER--- 313 (378)
Q Consensus 240 ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 313 (378)
|+..|..+|. ....+|+| .|++....... ........++.++........ ..+ ++.....+
T Consensus 204 Y~~aK~~lf~~~~~~~~~Vin-~dd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~--~i~~~~~g~~~ 270 (475)
T COG0769 204 YGAAKAVLFESLPHSGEAVIN-PDDGHGLDYKE-RLKNALGDYITYGCDFKRPDL---------DYR--GIEESSSGSDF 270 (475)
T ss_pred HHHHHHHHHhhcCCCccEEEc-cCCchHHHHHH-HHHhcCCCEEEeCCCCchhhh---------hhc--cceeeecccee
Confidence 9999999985 55678999 67887643322 222233356665421110000 000 11111111
Q ss_pred cccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEec
Q 017061 314 DLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN 377 (378)
Q Consensus 314 ~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~ 377 (378)
.+....+..++.+||+|.||++|+++|++++..| |+|.+.|+++|+++.+.||||+.+.
T Consensus 271 ~~~~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~l-----G~~~e~i~~~l~~~~~v~GRmE~v~ 329 (475)
T COG0769 271 VFEPSGGIGEYELPLPGLFNVYNALAAVAAALAL-----GVDLEDILAGLETLKPVPGRMELVN 329 (475)
T ss_pred EEEccCCceeEeccccchhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhcCCCCCcceEec
Confidence 1122234567899999999999999999999999 9999999999999988999999875
No 36
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.96 E-value=5e-29 Score=254.47 Aligned_cols=205 Identities=18% Similarity=0.183 Sum_probs=141.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 017061 95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI 174 (378)
Q Consensus 95 ~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (378)
++|+||||||||||++||+++|+..|+++.+. +++|.|++..
T Consensus 122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~--------------Gnig~p~~~~------------------------ 163 (473)
T PRK00141 122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAV--------------GNIGVPVSAA------------------------ 163 (473)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEe--------------ccCChhHHHH------------------------
Confidence 69999999999999999999999999987642 2246555420
Q ss_pred CHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeE
Q 017061 175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPL 254 (378)
Q Consensus 175 t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~ 254 (378)
+....+.|++|+|+|+.+. +... ..+|+++|||||++||+|+|| |+|+|+++|..|++. ..+
T Consensus 164 ------------l~~~~~~~~~V~E~ss~~l-~~~~---~~~pdiaViTNi~~dHLd~~~-s~e~y~~aK~~l~~~-~~~ 225 (473)
T PRK00141 164 ------------LVAQPRIDVLVAELSSFQL-HWSP---TLTPDVGVVLNLAEDHIDWHG-SMRDYAADKAKVLRG-PVA 225 (473)
T ss_pred ------------HhcCCCCCEEEEecCCccc-ccCc---ccCCCEEEEcCCChhhccccC-CHHHHHHHHHHHhhC-CEE
Confidence 1123568999999999885 2333 345899999999999999997 999999999999975 578
Q ss_pred EEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-cccccccccccccCCCchhH
Q 017061 255 VLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLSIELLDVKLCMIGNHQ 333 (378)
Q Consensus 255 V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~l~l~G~hq 333 (378)
|+| .|||....+..+. ...++++|+...... . ..++....+.....+ .+.+ ...+.+|++|.||
T Consensus 226 vln-~Dd~~~~~~~~~~---~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~hn 290 (473)
T PRK00141 226 VIG-ADDEYVVQLTSAA---DLSGLIGFTMGEPAA--G------QVGVRDGELVDNAFGQNVVL---ASAEGISPAGPAG 290 (473)
T ss_pred EEE-CCCHHHHHHHhhc---CCCcEEEEeCCCCCc--C------cceEECCEEEEecCCCceEE---eehhhcCCCcHhH
Confidence 899 5788654432211 123566664211000 0 000000011111000 0111 0125689999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCce-eEEEe
Q 017061 334 LHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRA-EIFLM 376 (378)
Q Consensus 334 ~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pg-R~~~~ 376 (378)
++|+++|++++..+ +++.+.|+++|++| .||+ |++.+
T Consensus 291 ~~Na~aA~a~~~~l-----gi~~~~i~~~l~~~-~~~~~R~e~~ 328 (473)
T PRK00141 291 VLDALAAAAVARSQ-----GVAPEAIARALSSF-EVAGHRGQVV 328 (473)
T ss_pred HHHHHHHHHHHHHc-----CCCHHHHHHHHhhC-CCCCCceEEE
Confidence 99999999999999 99999999999998 5666 66543
No 37
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=99.96 E-value=4.9e-29 Score=274.29 Aligned_cols=221 Identities=21% Similarity=0.198 Sum_probs=152.1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
+.++|+||||||||||+.||+++|+..|.+...+.+++. ++ +.+|.|++
T Consensus 602 ~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn--~n-----~~~g~~~~------------------------ 650 (958)
T PRK11929 602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGN--FN-----NEIGVPLT------------------------ 650 (958)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcc--cC-----CCcchHHH------------------------
Confidence 568999999999999999999999999766555555542 11 21243321
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK--- 249 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik--- 249 (378)
.+..+.+.|++|+|+|+++..+...+....+|+++|||||++||+|+|| |+|+|+++|+.|++
T Consensus 651 -------------l~~~~~~~~~~VlE~s~~~~g~~~~~~~~~~pdiaViTNI~~dHLd~~~-s~e~y~~aK~~i~~~~~ 716 (958)
T PRK11929 651 -------------LLRLRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMH-SVEAVARAKGEIIAALP 716 (958)
T ss_pred -------------HhcCCCCCcEEEEEeCCCCCccHHHHhCccCCCEEEEcCCcHHHhhhcC-CHHHHHHHHHHHHccCC
Confidence 0112467899999999987666554443346899999999999999997 89999999999994
Q ss_pred CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccc-cchhccccccCCCCCCcccceeEeecc--cccc--ccccccc
Q 017061 250 YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAG-IRATINGLSMFNDRPCQSCDIIVQAER--DLKL--SIELLDV 324 (378)
Q Consensus 250 ~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i 324 (378)
+++.+|+| .|+|....+.. .+. ..++++|+... ....... +. .++.....+ .+.+ ..+..++
T Consensus 717 ~~~~~Vln-~Dd~~~~~~~~-~~~--~~~~~~fg~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 783 (958)
T PRK11929 717 EDGVAVVN-GDDPYTAIWAK-LAG--ARRVLRFGLQPGADVYAEK--IA-------KDISVGEAGGTRCQVVTPAGSAEV 783 (958)
T ss_pred CCCEEEEE-CCcHHHHHHHH-hhc--CCcEEEEeCCCCcceEeee--cc-------cceeecCCCceEEEEEECCceEEE
Confidence 46789999 57776543322 211 23455554211 0000000 00 000000000 0111 1122457
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 325 KLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 325 ~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
++|++|.||++|+++|++++..+ |++.+.|.++|++|.++||||+.+
T Consensus 784 ~l~l~G~hnv~NalaAia~a~~l-----Gi~~~~i~~~L~~f~~~~gR~e~~ 830 (958)
T PRK11929 784 YLPLIGEHNLRNALAAIACALAA-----GASLKQIRAGLERFQPVAGRMQRR 830 (958)
T ss_pred EeCCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhCCCCCCCceEE
Confidence 89999999999999999999999 999999999999998899999875
No 38
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.96 E-value=9.7e-29 Score=222.01 Aligned_cols=181 Identities=29% Similarity=0.369 Sum_probs=121.7
Q ss_pred EeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHH
Q 017061 99 IAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFE 178 (378)
Q Consensus 99 VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE 178 (378)
||||||||||++||++||+++|++++.+++- +..+.
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~--------------~~~~~------------------------------ 36 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNT--------------NNQIG------------------------------ 36 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSC--------------HHHHH------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcccccccc--------------cchHH------------------------------
Confidence 8999999999999999999999988774320 00010
Q ss_pred HHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---CCCeEE
Q 017061 179 VLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---YGRPLV 255 (378)
Q Consensus 179 ~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik---~~~~~V 255 (378)
....+....+.++|++|+|+|+++..+ ..+....+|+++|||||++||+++++ |+++|+++|+.+++ +++.+|
T Consensus 37 --~~~~~~~~~~~~~~~~V~E~~~~~~~~-~~l~~~~~p~i~viTni~~dH~~~~~-s~~~~~~~k~~~~~~~~~~~~~v 112 (188)
T PF08245_consen 37 --LPLLLLNAREGGADIAVLEVSEGGLGD-ERLSFLLKPDIAVITNIGPDHLDRFG-SIEEYAEAKAKIFRGLKPGGVAV 112 (188)
T ss_dssp --HHHHHHHHHHTTSSEEEEEESSSCCCT-STTSGGSBESEEEE----SSSHCCTS-SHHHHHHHHHGGHTTTSTTSEEE
T ss_pred --HHHHHhhhcccccceeeeeccCCcccc-ceeeeeeehheeeeceecccccccCC-CHHHHHHHHHhhhhhcccceEEE
Confidence 011122344568999999999997665 33333256899999999999999995 99999999999997 467899
Q ss_pred EcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccc---ccccccccccCCCch
Q 017061 256 LGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLK---LSIELLDVKLCMIGN 331 (378)
Q Consensus 256 ~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~i~l~l~G~ 331 (378)
+| .|||.. ...+...++++++|+... ..++....+....++ .+. ......++.+|++|.
T Consensus 113 ~n-~dd~~~----~~~~~~~~~~v~~~~~~~------------~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~l~G~ 175 (188)
T PF08245_consen 113 LN-ADDPEL----AEIAANSKCKVITFGLDN------------SADIRASNISYSEEGGRFRIISYNGEEFEIELPLPGK 175 (188)
T ss_dssp EE-TTSHHH----HHHHHHHTTTEEEEESSS------------SSEEEEEEEEEETTEEEEEEEEETTEEEEEEESSSSH
T ss_pred ec-CCCHHH----HHHHHhcCCcEEEeccCc------------ccceeeeeEEEecCCcEEEEEEecCceEEEEecCCCH
Confidence 99 578843 333444566788876322 111222222221111 111 122345689999999
Q ss_pred hHHHHHHHHHHHH
Q 017061 332 HQLHNALTATCAA 344 (378)
Q Consensus 332 hq~~NalaAlaaa 344 (378)
||++|+++|+++|
T Consensus 176 hn~~NalaA~a~a 188 (188)
T PF08245_consen 176 HNVENALAAIAAA 188 (188)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999986
No 39
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.96 E-value=1.4e-28 Score=261.83 Aligned_cols=248 Identities=23% Similarity=0.254 Sum_probs=161.1
Q ss_pred HHHHHHHHhCC--CCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061 79 RMNRLMDRLGN--PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (378)
Q Consensus 79 r~~~ll~~lg~--p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (378)
....++..|-. +..+.|+|+||||||||||++||+++|+..|++||+.+|+++. +| +..+...+.
T Consensus 463 v~~~Iid~L~~~~~~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~-------i~--~~~i~~gd~---- 529 (727)
T PRK14016 463 VGEAIVDMLFPEGDDGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVY-------ID--GRLIDKGDC---- 529 (727)
T ss_pred HHHHHHHHhcccCCCCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEE-------EC--CEEeccccc----
Confidence 34566666543 3456799999999999999999999999999999999887643 33 322211000
Q ss_pred HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcC-C
Q 017061 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALG-G 235 (378)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG-~ 235 (378)
+.+.. +..++.+.++|++|+|+|+++..... +...+|+++|||||++||++++| +
T Consensus 530 ------------------t~p~s----~~~ll~~~~~d~aVlE~s~~~il~~g--l~~~~pdvaVvTNI~~DHL~~~~~~ 585 (727)
T PRK14016 530 ------------------TGPKS----ARRVLMNPDVEAAVLETARGGILREG--LAYDRCDVGVVTNIGEDHLGLGGIN 585 (727)
T ss_pred ------------------cCHHH----HHHHhcCCCCCEEEEEcCCCchhhcC--CcccccCeEEEcCCCHHHhhccCCC
Confidence 00000 00134567889999999988864322 22335899999999999999886 7
Q ss_pred CHHHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEeccc-ccchhccccccCCCCCCcc-c-ceeE
Q 017061 236 SLETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDA-GIRATINGLSMFNDRPCQS-C-DIIV 309 (378)
Q Consensus 236 tle~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~-~~~~ 309 (378)
|+|+|+.+|+.+++ +++.+|+| .|||.+.. .+....+++++|+.. +.+....... ..+..+.. . .+.+
T Consensus 586 t~E~~~~~K~~i~~~v~~~g~aVlN-aDD~~~~~----~~~~~~~~vi~fs~~~~~~~~~~~~~-~~~~~~~~~~~~i~~ 659 (727)
T PRK14016 586 TLEDLAKVKRVVVEAVKPDGYAVLN-ADDPMVAA----MAERCKGKVIFFSMDPDNPVIAEHRA-QGGRAVYVEGDYIVL 659 (727)
T ss_pred CHHHHHHHHHHHHhhhCCCCeEEEc-CCCHHHHH----HHHhCCCcEEEEeCCCCChHHHHHHH-hCCceEEEeCCEEEE
Confidence 99999999999984 56789999 57886533 334445677777522 1110000000 00000000 0 0011
Q ss_pred eeccccccc-ccccccccCCCc--hhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCC----CceeEEE
Q 017061 310 QAERDLKLS-IELLDVKLCMIG--NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHF----WRAEIFL 375 (378)
Q Consensus 310 ~~~~~~~~~-~~~~~i~l~l~G--~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~----~pgR~~~ 375 (378)
.. +..... ....++++.++| .||++|+++|+|+|+.+ |++.+.|+++|++|.+ .|||+..
T Consensus 660 ~~-g~~~~~~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~l-----Gi~~~~I~~~L~sF~~~~~~~pGR~n~ 726 (727)
T PRK14016 660 AE-GGWEIRIISLADIPLTLGGKAGFNIENALAAIAAAWAL-----GIDIELIRAGLRTFVSDAAQAPGRFNL 726 (727)
T ss_pred Ee-CCcceeeccccccceecCCcchhhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhcCCCccCCCccccc
Confidence 00 100000 011234554466 79999999999999999 9999999999999975 8999864
No 40
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.96 E-value=2e-28 Score=249.14 Aligned_cols=202 Identities=16% Similarity=0.131 Sum_probs=142.1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
+.++|+||||||||||+.||+++|+..|+++.. ..| +|.|+...
T Consensus 116 ~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~-------------~gn-iG~p~~~~---------------------- 159 (458)
T PRK01710 116 PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWV-------------GGN-IGTPLFSN---------------------- 159 (458)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEE-------------CCc-cChhHHHH----------------------
Confidence 457999999999999999999999999988642 112 45554310
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK--- 249 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik--- 249 (378)
+....+.|++|+|+|+.+..+.. .+|+++|||||++||+|+|| |+|+|+++|..|++
T Consensus 160 --------------~~~~~~~~~~VlE~~~~~~~~~~-----~~PdiaViTNI~~dHld~~~-s~e~~~~aK~~i~~~~~ 219 (458)
T PRK01710 160 --------------IEEIKEEDKVVLELSSFQLMTMD-----VSPEVAVVTNLSPNHLDVHK-DMEEYIDAKKNIFKYQS 219 (458)
T ss_pred --------------HhhCCCCCEEEEEcCccccccCC-----CCCCEEEEecCChhhccccC-CHHHHHHHHHHHHhcCC
Confidence 01123679999999998776432 35899999999999999997 99999999999985
Q ss_pred CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCc-ccceeEeecccccccccccccccCC
Q 017061 250 YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQ-SCDIIVQAERDLKLSIELLDVKLCM 328 (378)
Q Consensus 250 ~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~l~l 328 (378)
+++.+|+| .|||....+ +.....++++|+..... ....+. ...+.+. +. .-...+.+++
T Consensus 220 ~~~~~v~n-~Dd~~~~~~----~~~~~~~~~~fg~~~~~---------~~~~~~~~~~~~~~--~~----~~~~~~~l~l 279 (458)
T PRK01710 220 ENDLLVLN-KDNEITNGM----EKEAKGDVVKFSRKEKV---------YEGAYLKNGKLYIR--GK----EVCKKDDIKL 279 (458)
T ss_pred CCCEEEEe-CCcHHHHHH----HhhcCCcEEEEeCCCCC---------CCceEEeCCEEEEc--Cc----eEEEhhhcCC
Confidence 46789999 577755433 22223456666521100 000000 0001111 00 0012467899
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 329 IGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 329 ~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
+|.||++|+++|++++.. .++.+.|.++|++|.+.++||+.+
T Consensus 280 ~G~hnv~NalaA~a~a~~------~i~~~~i~~~L~~f~~~~~R~e~~ 321 (458)
T PRK01710 280 KGMHNVENLLAAFCAVND------DVSIESMKKVATTFSGVEHRCEFV 321 (458)
T ss_pred ccHhHHHHHHHHHHHHHh------CCCHHHHHHHHHhCCCCCcceEEE
Confidence 999999999999999864 499999999999998899999864
No 41
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=99.96 E-value=2e-28 Score=248.52 Aligned_cols=206 Identities=20% Similarity=0.197 Sum_probs=138.3
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (378)
Q Consensus 94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (378)
.++|+||||||||||++||++||+.+|+++..+. .+++|.+...
T Consensus 99 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~------------gg~~~~~~~~------------------------ 142 (448)
T TIGR01082 99 RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVV------------GGLVKEAGTN------------------------ 142 (448)
T ss_pred CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEE------------CcccccCCcc------------------------
Confidence 3799999999999999999999999998433221 0111222211
Q ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHh-hcCCCHHHHHHHHhccccC--
Q 017061 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTA-ALGGSLETIAMAKSGIIKY-- 250 (378)
Q Consensus 174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld-~lG~tle~ia~~Ka~Iik~-- 250 (378)
......|++|+|+++.+... ...+|+++|||||++||+| ++ +|+|+|+.+|..|++.
T Consensus 143 --------------~~~~~~~~~V~E~s~~q~~~-----~~~~p~vaVitNI~~DHld~~~-~s~e~y~~aK~~i~~~~~ 202 (448)
T TIGR01082 143 --------------ARLGSGEYLVAEADESDASF-----LHLQPNVAIVTNIEPDHLDTYG-SSFERLKAAFEKFIHNLP 202 (448)
T ss_pred --------------cccCCCCEEEEECCCccchH-----hhccCCEEEEecCChhhcchhc-CCHHHHHHHHHHHHHhCC
Confidence 01134699999999876531 2335799999999999999 65 5999999999999964
Q ss_pred -CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc--c-cccccc
Q 017061 251 -GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS--I-ELLDVK 325 (378)
Q Consensus 251 -~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~i~ 325 (378)
++.+|+| .|||....+. +....++++|+.... ..++....+...... .+.+. . ....+.
T Consensus 203 ~~~~~V~n-~dd~~~~~~~----~~~~~~~~~f~~~~~-----------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 266 (448)
T TIGR01082 203 FYGLAVIC-ADDPVLRELV----PKATEQVITYGGSGE-----------DADYRAENIQQSGAEGKFSVRGKGKLYLEFT 266 (448)
T ss_pred CCCEEEEE-CCCHHHHHHH----hhcCCCEEEeCCCCC-----------CCcEEEEEEEecCCeEEEEEEECCceEEEEE
Confidence 6789999 5777654432 222335555542100 001111001000000 01110 0 112467
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 326 LCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 326 l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
++++|.||++|+++|++++..+ +++.+.|.++|++|...++|++.+
T Consensus 267 ~~l~G~hn~~N~~aA~a~~~~l-----gi~~~~i~~~l~~f~~~~~R~e~~ 312 (448)
T TIGR01082 267 LNLPGRHNVLNALAAIAVALEL-----GIDFEAILRALANFQGVKRRFEIL 312 (448)
T ss_pred ecCccHhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCccceEE
Confidence 8999999999999999999999 999999999999996667777654
No 42
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.94 E-value=2e-26 Score=249.15 Aligned_cols=200 Identities=14% Similarity=0.108 Sum_probs=137.0
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (378)
Q Consensus 94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (378)
.++|+||||||||||++||++||+.+|+++..+.. .+ +|.++..
T Consensus 104 ~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~g----------G~--~g~~~~~------------------------ 147 (809)
T PRK14573 104 QISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIG----------GL--NQEGLNG------------------------ 147 (809)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEEC----------Cc--ccccccc------------------------
Confidence 37999999999999999999999999986433211 11 2444431
Q ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---C
Q 017061 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---Y 250 (378)
Q Consensus 174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik---~ 250 (378)
...+.|++|+|+|+.+ .+ +...+|+++|||||++||+|+|++|+|+|+.+|..+++ +
T Consensus 148 ---------------~~~~~d~~V~E~ss~~-~~----~~~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~ 207 (809)
T PRK14573 148 ---------------YSGSSEYFVAEADESD-GS----LKHYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQ 207 (809)
T ss_pred ---------------ccCCCCEEEEECCCCc-ch----hheeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCC
Confidence 1134799999999884 22 23445899999999999999995599999999988874 3
Q ss_pred CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc--c-ccccccc
Q 017061 251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS--I-ELLDVKL 326 (378)
Q Consensus 251 ~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~i~l 326 (378)
++.+|+| .||+.... .+ ....+.++.. .++....+...... .+.+. . ....+++
T Consensus 208 ~~~~V~N-~Dd~~~~~----~~---~~~~~g~~~~--------------~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l 265 (809)
T PRK14573 208 INKCFYN-GDCPRLKG----CL---QGHSYGFSSS--------------CDLHILSYYQEGWRSYFSAKFLGVVYQDIEL 265 (809)
T ss_pred CCEEEEe-CCCHHHHh----hc---ccEEEccCCC--------------CcEEEEEEEecCCeEEEEEEECCceEEEEEe
Confidence 5678999 57774322 11 1222222210 00000001000000 01110 0 1134778
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 327 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 327 ~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
+++|.||++|+++|++++..+ +++.+.|.++|++|..||||++.+
T Consensus 266 ~l~G~hn~~Na~aAia~~~~l-----gi~~~~i~~~L~~f~~~~~R~e~~ 310 (809)
T PRK14573 266 NLVGMHNVANAAAAMGIALTL-----GIDEGAIRNALKGFSGVQRRLERK 310 (809)
T ss_pred ccccHhhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCCEEE
Confidence 999999999999999999999 999999999999998899999865
No 43
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.93 E-value=1.8e-25 Score=225.13 Aligned_cols=183 Identities=19% Similarity=0.164 Sum_probs=126.1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
+.++|+||||||||||++||+++|+..|.++.+. +++|.|+..
T Consensus 101 ~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~--------------GniG~p~l~----------------------- 143 (418)
T PRK00683 101 RYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAM--------------GNIGIPILD----------------------- 143 (418)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEE--------------CCcCHHHHH-----------------------
Confidence 3579999999999999999999999999866542 224554310
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~ 252 (378)
...+.|++|+|+|+.+..+... ...+|+++|||||++||+|+|| |+|+|+++|..|+..
T Consensus 144 ----------------~~~~~~~~V~E~~s~~~~~~~~--~~~~~~iavitNi~~dHld~~~-s~e~y~~aK~~i~~~-- 202 (418)
T PRK00683 144 ----------------GMQQPGVRVVEISSFQLADQEK--SYPVLSGGMILNISDNHLDYHG-NLSAYFQAKQNIAKC-- 202 (418)
T ss_pred ----------------HhhcCCEEEEEechhhhCcCcc--cCCCccEEEEecCChhHhccCC-CHHHHHHHHHHHHHh--
Confidence 1124799999999997643222 2223589999999999999997 999999999999852
Q ss_pred eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchh
Q 017061 253 PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNH 332 (378)
Q Consensus 253 ~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~h 332 (378)
+.+ .++.. .. ....++.. + ......+ .+. .. ....++++|.|
T Consensus 203 --~~~-~~~~~----~~--------~~~~~~~~--------~-~~~~~~~--~~~---------~~---~~~~~~~~g~h 244 (418)
T PRK00683 203 --LRN-PDDLW----VG--------DERSYGHS--------Y-LEYVQEI--MRL---------LD---KGSALKPLYLH 244 (418)
T ss_pred --hhC-ccccc----cc--------ccCCcCce--------e-ecCcchh--hhh---------hc---cccccCCCccc
Confidence 122 12110 00 00111100 0 0000000 000 00 01346789999
Q ss_pred HHHHHHHHHHHHHH-HHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 333 QLHNALTATCAALC-LRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 333 q~~NalaAlaaa~~-L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
|++|+++|+++++. + +++.+.|+++|++|.+||||++.+
T Consensus 245 n~~Na~aA~a~~~~l~-----g~~~~~i~~~l~~~~~~~~R~e~v 284 (418)
T PRK00683 245 DRYNYCAAYALANEVF-----PISEESFLEAVATFEKPPHRMEYL 284 (418)
T ss_pred hHHHHHHHHHHHHHhc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence 99999999999998 6 999999999999998999999875
No 44
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.91 E-value=1.2e-23 Score=210.14 Aligned_cols=177 Identities=20% Similarity=0.169 Sum_probs=124.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 017061 95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI 174 (378)
Q Consensus 95 ~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (378)
++|+||||||||||++||+++|+++|..++ .| +|.|++.
T Consensus 90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~---------------gn-iG~p~~~------------------------- 128 (401)
T PRK03815 90 FSIWISGTNGKTTTTQMTTHLLEDFGAVSG---------------GN-IGTPLAE------------------------- 128 (401)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHCCCcEE---------------EE-ecHhHHh-------------------------
Confidence 489999999999999999999999984321 12 3655431
Q ss_pred CHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc---CC
Q 017061 175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---YG 251 (378)
Q Consensus 175 t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik---~~ 251 (378)
...+.|++|+|+|+.+ ++.+..+ +|+++|||||++||+|+|| |+|+|+++|..|++ ++
T Consensus 129 --------------~~~~~~~~V~E~ss~~-~~~~~~~---~p~iavitNi~~dHld~~~-s~e~~~~~k~~i~~~~~~~ 189 (401)
T PRK03815 129 --------------LDKNAKIWVLETSSFT-LHYTNKA---KPNIYLLLPITPDHLSWHG-SFENYVKAKLKPLKRMNEG 189 (401)
T ss_pred --------------cCCCCCEEEEECChHH-hhCCccC---CCcEEEEcCCcccchhhcC-CHHHHHHHHHHHHhCCCcC
Confidence 1345799999998876 2344444 4799999999999999997 99999999999985 35
Q ss_pred CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCch
Q 017061 252 RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGN 331 (378)
Q Consensus 252 ~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~ 331 (378)
+.+|+| .||+.. . ...++++|+... ++. ..+.+. .. .+.+.+.
T Consensus 190 ~~~v~n-~dd~~~----~-----~~~~~~~fg~~~--------------~~~-~~~~~~--------~~----~~~~~~~ 232 (401)
T PRK03815 190 DVAILP-KKFKNT----P-----TKAQKIFYEDEE--------------DLA-EKFGID--------SE----KINFKGP 232 (401)
T ss_pred CEEEEe-cccccc----c-----cCCcEEEEecCC--------------ccc-cceeEe--------hH----hcCCchH
Confidence 678888 466632 1 124555554110 000 001110 00 1223344
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 332 HQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 332 hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
| +.|+++|++++..+ |+ +.+.++|++|.+.++|++.+
T Consensus 233 ~-~~NalaA~a~a~~~-----G~--~~~~~~L~~f~~~~~R~e~~ 269 (401)
T PRK03815 233 F-LLDALLALAVYKIL-----FD--ELDYERLNAFKIGKHKLEEF 269 (401)
T ss_pred H-HHHHHHHHHHHHHh-----Cc--HHHHHHHHhCCCCCceEEEE
Confidence 4 99999999999999 74 56778999998888888764
No 45
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.77 E-value=5.3e-08 Score=91.94 Aligned_cols=165 Identities=20% Similarity=0.279 Sum_probs=109.1
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee----eCCcccc--cceEEeeCCCCcccCHHH
Q 017061 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY----TSPHIKT--IRERMNVGRLNRPVSAKA 151 (378)
Q Consensus 80 ~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~----tSp~l~~--~~eri~in~~G~~is~~~ 151 (378)
-++++..+-....+..+|+|||+ .||+|...-|..-|.+.|++|++. +||+-.. ..+|++++ .....+..
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~--~~~~~~~v 114 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQ--RLAVDPGV 114 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHH--hhccCCCe
Confidence 34566665444456679999998 889999999999999999999987 7786433 46677776 44433333
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEee-CCCCC-cccccccccCCCcEEEEccCChhh
Q 017061 152 LNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGA-RDATNIISSSGLAASVITTIGEEH 229 (378)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv-g~gg~-~D~t~~~~~~~p~vaVITNI~~DH 229 (378)
|.+.. ...+.++..---|.-+..++...++|++++|+ |.|+. -|..+.++. -+.|.+.
T Consensus 115 FiRs~------------~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt---~~~v~~p----- 174 (323)
T COG1703 115 FIRSS------------PSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADT---FLVVMIP----- 174 (323)
T ss_pred EEeec------------CCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcce---EEEEecC-----
Confidence 33221 12344555555566666778889999999999 77763 233444432 2333333
Q ss_pred HhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHH
Q 017061 230 TAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDE 271 (378)
Q Consensus 230 ld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~ 271 (378)
-.| +++-..|+|++.=+..+|+|+.|.+.+....+..
T Consensus 175 --g~G---D~~Q~iK~GimEiaDi~vINKaD~~~A~~a~r~l 211 (323)
T COG1703 175 --GAG---DDLQGIKAGIMEIADIIVINKADRKGAEKAAREL 211 (323)
T ss_pred --CCC---cHHHHHHhhhhhhhheeeEeccChhhHHHHHHHH
Confidence 233 4445569999998889999987766665544443
No 46
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.65 E-value=3.2e-08 Score=92.15 Aligned_cols=165 Identities=21% Similarity=0.297 Sum_probs=95.5
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee----eCCcccc--cceEEeeCCCCcccCHHH
Q 017061 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY----TSPHIKT--IRERMNVGRLNRPVSAKA 151 (378)
Q Consensus 80 ~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~----tSp~l~~--~~eri~in~~G~~is~~~ 151 (378)
-..+|+.+-....+..+|+|||+ .||+|...-+...|.+.|++|++. |||.-.. ..+|++++ ...-.+..
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~--~~~~d~~v 92 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQ--ELSRDPGV 92 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCH--HHHTSTTE
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhc--CcCCCCCE
Confidence 45666666544456789999998 889999999999999999999987 6775322 34555554 11111111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEee-CCCCCcccccccccCCCcEEEEccCChhhH
Q 017061 152 LNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGARDATNIISSSGLAASVITTIGEEHT 230 (378)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv-g~gg~~D~t~~~~~~~p~vaVITNI~~DHl 230 (378)
|.+.+ ...+++.-.--.|.-+..++...++|++++|+ |.|+. .+.+.+..+..+-|++.=.-|-+
T Consensus 93 fIRS~------------atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQs--E~~I~~~aD~~v~v~~Pg~GD~i 158 (266)
T PF03308_consen 93 FIRSM------------ATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQS--EVDIADMADTVVLVLVPGLGDEI 158 (266)
T ss_dssp EEEEE---------------SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTH--HHHHHTTSSEEEEEEESSTCCCC
T ss_pred EEeec------------CcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCcc--HHHHHHhcCeEEEEecCCCccHH
Confidence 11000 01233333333444455667778999999999 88873 23333333345667777655655
Q ss_pred hhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHH
Q 017061 231 AALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRD 270 (378)
Q Consensus 231 d~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~ 270 (378)
+.. |+||+.-...+|+|+.|.|.+.....+
T Consensus 159 Q~~----------KaGimEiaDi~vVNKaD~~gA~~~~~~ 188 (266)
T PF03308_consen 159 QAI----------KAGIMEIADIFVVNKADRPGADRTVRD 188 (266)
T ss_dssp CTB-----------TTHHHH-SEEEEE--SHHHHHHHHHH
T ss_pred HHH----------hhhhhhhccEEEEeCCChHHHHHHHHH
Confidence 544 888888778899998777766655544
No 47
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.37 E-value=0.0067 Score=59.41 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=80.6
Q ss_pred HHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHH
Q 017061 81 NRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHK 158 (378)
Q Consensus 81 ~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~ 158 (378)
..+++.+-....+..+|+|+|. .||||.+..+...|+..|++|++++- + ...+.+...+..-..+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~------------D-p~s~~~~gallgd~~r 109 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAV------------D-PSSTRTGGSILGDKTR 109 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe------------C-CCccccchhhhchHhH
Confidence 4555554322345579999998 68999999999999999999988521 0 0111111111100000
Q ss_pred HHHHHHHHHhh---------cCCCcCHHHHHHHHHHHHHHhcCCCEEEEee-CCCCCcccccccccCCCcEEEEccCChh
Q 017061 159 IKGVLDEAIRL---------ENGCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGARDATNIISSSGLAASVITTIGEE 228 (378)
Q Consensus 159 ~~~~~~~~~~~---------~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv-g~gg~~D~t~~~~~~~p~vaVITNI~~D 228 (378)
+. ++... +.+.+....-.+.-+...+...+.|++++|+ |.++. .+.+.... |+.++..
T Consensus 110 ~~----~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs--~~~i~~~a--D~vlvv~---- 177 (332)
T PRK09435 110 ME----RLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQS--ETAVAGMV--DFFLLLQ---- 177 (332)
T ss_pred HH----hhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccc--hhHHHHhC--CEEEEEe----
Confidence 00 00000 0111221122233344456667899999999 55532 23344433 4444431
Q ss_pred hHhhcCCCHHHHHHHHhccccCCCeEEEcCCC
Q 017061 229 HTAALGGSLETIAMAKSGIIKYGRPLVLGGPF 260 (378)
Q Consensus 229 Hld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d 260 (378)
+ . .+-+++-..|++++.-...+|+|+.|
T Consensus 178 --~-p-~~gd~iq~~k~gi~E~aDIiVVNKaD 205 (332)
T PRK09435 178 --L-P-GAGDELQGIKKGIMELADLIVINKAD 205 (332)
T ss_pred --c-C-CchHHHHHHHhhhhhhhheEEeehhc
Confidence 0 1 24455555677777655678889765
No 48
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.13 E-value=0.0062 Score=58.87 Aligned_cols=48 Identities=29% Similarity=0.373 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 80 ~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
.+.+++.+-......++|+|+|. .||||++..+...|...|++|+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46677777555556789999996 7899999999999999999998753
No 49
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=96.91 E-value=0.003 Score=63.33 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=67.3
Q ss_pred eCCCchhhhhhcccccc--cccccCCCCCccHHHHHHHHHhcchhhhcCCCCCCCCCC----CCCCChHHHHHHHHHhCC
Q 017061 16 YSPTSRGYFKKFSIGSK--SCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDS----DDGFDLGRMNRLMDRLGN 89 (378)
Q Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~----~~~~~L~r~~~ll~~lg~ 89 (378)
++|..|..+..|++..= -|-. . .+.+.|.+...... ++..+.+. ..++.|+.++++++.++.
T Consensus 29 ~~p~~~k~~r~~~i~e~A~~~gv----s----~~tiR~ye~~gll~----~~~~~~~gr~~~~~~ftL~ei~~lr~~~~~ 96 (388)
T PRK13705 29 DSPEARKITRRWRIGEAADLVGV----S----SQAIRDAEKAGRLP----HPDMEMRGRVEQRVGYTIEQINHMRDVFGT 96 (388)
T ss_pred CCCccccccCCCCHHHHHHHHCc----C----HHHHHHHHHcCCCC----CCCcCCCCcchhhcCcCHHHHHHHHHhhcc
Confidence 47999999988877432 2221 1 24566665543221 11011111 125889999999988865
Q ss_pred CC-----CCCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 90 PH-----SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 90 p~-----~~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+. ...++|+|+ |-.|||||+.-|++.|...|+||.+.
T Consensus 97 ~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 97 RLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred cccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 43 346789999 88999999999999999999999886
No 50
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=96.67 E-value=0.026 Score=57.80 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=29.7
Q ss_pred CcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061 94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
++.|-|||| .|||+++..|...|++.|++|+.|-
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK 39 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFK 39 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceee
Confidence 467888887 5699999999999999999998874
No 51
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=96.52 E-value=0.015 Score=58.29 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=46.0
Q ss_pred CCChHHHHHHHHHhCCCC-----CCCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 74 GFDLGRMNRLMDRLGNPH-----SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 74 ~~~L~r~~~ll~~lg~p~-----~~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+.|+.+.++.+.++.+. .+.++|+|+ |-.|||||+.-|++.|...|+||.+.
T Consensus 81 ~ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI 141 (387)
T PHA02519 81 GYTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI 141 (387)
T ss_pred eEcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 488999999999987653 346799999 78899999999999999999999876
No 52
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=95.88 E-value=0.033 Score=56.21 Aligned_cols=100 Identities=23% Similarity=0.405 Sum_probs=60.6
Q ss_pred eeCCCchhhhhhcccccc--cccccCCCCCccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCC---
Q 017061 15 FYSPTSRGYFKKFSIGSK--SCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGN--- 89 (378)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~--- 89 (378)
-++|.+|.-+..|.+..= -|-+ . ...+.|++.-. . +.++....+....+.++.+.++-+.++.
T Consensus 37 ~~~p~~~k~~r~ft~~e~A~~lgv----s----~~tlr~~~~~g-~---~~~~~~~~~grR~yt~~di~~lr~~l~~~~~ 104 (405)
T PRK13869 37 LFPPTSHKSLRKFTSGEAARLMKI----S----DSTLRKMTLAG-E---GPQPELASNGRRFYTLGQINEIRQMLAGSTR 104 (405)
T ss_pred cCCCCCCCCCCCCCHHHHHHHhCc----C----HHHHHHHHHcC-C---CCCCccCCCCceeecHHHHHHHHHHHHhhcc
Confidence 468999988877755322 2222 1 12344433211 0 1111111112223777776666665541
Q ss_pred --------CC----CCCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 90 --------PH----SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 90 --------p~----~~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|. .+.++|+|+ |-.|||||+.-|++.|...|+||.+.
T Consensus 105 ~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 105 GRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred ccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 22 356899999 77899999999999999999999876
No 53
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.71 E-value=0.061 Score=46.42 Aligned_cols=60 Identities=20% Similarity=0.371 Sum_probs=39.9
Q ss_pred HHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcC
Q 017061 188 FAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGG 258 (378)
Q Consensus 188 f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~ 258 (378)
....+.|++++++ .|-..+....+...+ .+-|+|+-+ -.+.|+-.|..++.....+++|+
T Consensus 87 ~~~~~~D~iiIDt-aG~~~~~~~~~~~Ad-~~ivv~tpe---------~~D~y~~~k~~~~~~~~~~~~~k 146 (148)
T cd03114 87 LDAAGFDVIIVET-VGVGQSEVDIASMAD-TTVVVMAPG---------AGDDIQAIKAGIMEIADIVVVNK 146 (148)
T ss_pred HHhcCCCEEEEEC-CccChhhhhHHHhCC-EEEEEECCC---------chhHHHHhhhhHhhhcCEEEEeC
Confidence 3346899999999 443333334443332 255666643 35788899999999888888884
No 54
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=95.45 E-value=0.056 Score=54.13 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=30.7
Q ss_pred CCCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 92 SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+.++|.|+ |-.|||||+.-|+..|...|++|.+.
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 456789888 66899999999999999999999876
No 55
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.23 E-value=0.22 Score=47.27 Aligned_cols=50 Identities=30% Similarity=0.334 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCCCCCc-EEEEeCC--CChHHHHHHHHHHHHHcCCc--eEeeeC
Q 017061 79 RMNRLMDRLGNPHSKFK-TVHIAGT--KGKGSTAAFLSSILRAEGYS--VGCYTS 128 (378)
Q Consensus 79 r~~~ll~~lg~p~~~~~-~I~VTGT--nGKtSTt~~l~~iL~~~G~~--vg~~tS 128 (378)
....+++.|+....+.| +|+|+|+ .||+||+..+..+|...+-. |-++++
T Consensus 66 ~~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpm 120 (283)
T COG1072 66 LFAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTM 120 (283)
T ss_pred HHHHHHHHhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEec
Confidence 34566667765544444 8999998 89999999999999998765 555544
No 56
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=94.24 E-value=0.1 Score=47.14 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 79 RMNRLMDRLGNPHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 79 r~~~ll~~lg~p~~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+++.-|..- ..+.++|.|+++ .||||++..|+..|...|++|.+.
T Consensus 5 ~l~~~l~~~---~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllI 52 (204)
T TIGR01007 5 AIRTNIQFS---GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLI 52 (204)
T ss_pred HHHHHHhhh---cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 344444433 345788999965 689999999999999999999764
No 57
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=94.18 E-value=0.063 Score=49.91 Aligned_cols=37 Identities=32% Similarity=0.452 Sum_probs=34.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCccc
Q 017061 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIK 132 (378)
Q Consensus 96 ~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~ 132 (378)
+|+|+|.-||||+..-|+.-|+..|++|.+.||-|+.
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m~ 37 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRMF 37 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECCcccc
Confidence 5899999999999999999999999999999998874
No 58
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.16 E-value=1.3 Score=43.34 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+..+|++.|- .|||||+..|+..|...|.+|.+.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3468888886 5799999999999999999998754
No 59
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.75 E-value=4.3 Score=38.68 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=30.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+.++|.++|. .|||||++-|+..|...|++|++.+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4568888886 6899999999999999999998854
No 60
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=93.70 E-value=0.22 Score=45.27 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=36.0
Q ss_pred HHHHHHHHHhC---CCCCCCcEEEEe---CCCChHHHHHHHHHHHHH-cCCceEee
Q 017061 78 GRMNRLMDRLG---NPHSKFKTVHIA---GTKGKGSTAAFLSSILRA-EGYSVGCY 126 (378)
Q Consensus 78 ~r~~~ll~~lg---~p~~~~~~I~VT---GTnGKtSTt~~l~~iL~~-~G~~vg~~ 126 (378)
.+++.-|.... ++....++|+|+ |-.||||++..|++.|.. .|++|.+.
T Consensus 16 ~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv 71 (207)
T TIGR03018 16 RKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLI 71 (207)
T ss_pred HHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 34444444333 344567899999 568999999999999986 69999774
No 61
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=4.1 Score=39.59 Aligned_cols=157 Identities=18% Similarity=0.126 Sum_probs=84.1
Q ss_pred CCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCcc--cccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 017061 92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPHI--KTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA 166 (378)
Q Consensus 92 ~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~l--~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~ 166 (378)
.+.++|.|-|| -||=||+..|...+++.|+++++..+-.. .-..+.+.++ -. ..+|... +++.
T Consensus 146 ~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgil~~~~gvvvd--av---~~DfaAG------ave~- 213 (339)
T COG3367 146 VDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGILIADDGVVVD--AV---VMDFAAG------AVES- 213 (339)
T ss_pred cCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceeeEEecCceEec--ch---hHHHHHH------HHHH-
Confidence 45789999999 79999999999999999999998755331 1122223333 11 2222221 1111
Q ss_pred HhhcCCCcCHHHHHHHHHHHHHH-hcCCCEEEEee--CCCCCc--ccccccccCCCcEEEEccCChhhHhhcC-----CC
Q 017061 167 IRLENGCITHFEVLTAMAFALFA-QNHVDIAVIEA--GLGGAR--DATNIISSSGLAASVITTIGEEHTAALG-----GS 236 (378)
Q Consensus 167 ~~~~~~~~t~fE~~t~~a~~~f~-~~~~d~~VlEv--g~gg~~--D~t~~~~~~~p~vaVITNI~~DHld~lG-----~t 236 (378)
..+-. ++++|+.++|- |+-+.. =.+.++....|+..|+- =.++|.-+.| +.
T Consensus 214 ------------------~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~-H~P~r~~~~g~P~~ip~ 274 (339)
T COG3367 214 ------------------AVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLC-HDPNRKYRDGFPEPIPP 274 (339)
T ss_pred ------------------HHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEE-ecCCCccccCCCCcCCC
Confidence 12223 35899999996 211111 12344555567754443 3555544332 35
Q ss_pred HHHHHHHHhccccCCCe-EEEcC--CCChhHHHHHHHHHHhhCCeE
Q 017061 237 LETIAMAKSGIIKYGRP-LVLGG--PFLPHIEHILRDEASLMCSQV 279 (378)
Q Consensus 237 le~ia~~Ka~Iik~~~~-~V~~~--~d~~~~~~vl~~~a~~~~~~~ 279 (378)
++++..--.-+-..... +.+|. -|++++++...+...+.+.|+
T Consensus 275 leevi~l~e~l~~a~Vvgi~lNtr~~dE~~are~~a~l~~efglP~ 320 (339)
T COG3367 275 LEEVIALYELLSNAKVVGIALNTRNLDEEEARELCAKLEAEFGLPV 320 (339)
T ss_pred HHHHHHHHHHccCCcEEEEEecccccChHHHHHHHHHHhhccCCcc
Confidence 67665543333222222 33441 244555555555555555443
No 62
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.40 E-value=1.3 Score=44.69 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=29.6
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
.++|++.|- .|||||...|+..|...|++|++++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 357888875 68999999999999999999998654
No 63
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.17 E-value=0.13 Score=45.02 Aligned_cols=37 Identities=32% Similarity=0.462 Sum_probs=32.5
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
.++++|+|. .||||...-|-..|++.||+|+..-..|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 479999997 7999999999999999999999875443
No 64
>PRK07667 uridine kinase; Provisional
Probab=93.16 E-value=0.24 Score=44.53 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
++.+-.++.... .+..+|+|+|- .||||++..|...|...|.++.++...
T Consensus 3 ~~~~~~~~~~~~---~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 3 TNELINIMKKHK---ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred HHHHHHHHHhcC---CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 344444443332 34479999995 899999999999999999988776544
No 65
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=92.84 E-value=2.6 Score=42.56 Aligned_cols=30 Identities=40% Similarity=0.424 Sum_probs=25.3
Q ss_pred EEEEeCC---CChHHHHHHHHHHHHHcCCceEe
Q 017061 96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 96 ~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
-|.|+|| .||||+|.-|...|++.|++|--
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqp 34 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQP 34 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccc
Confidence 4677887 79999999999999999877743
No 66
>PRK15453 phosphoribulokinase; Provisional
Probab=92.49 E-value=0.21 Score=47.85 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=29.5
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+.++|+|||+ .||||++..++.+|...|.++.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi 39 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVV 39 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEE
Confidence 45689999998 789999999999999877766554
No 67
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.42 E-value=4 Score=36.88 Aligned_cols=160 Identities=16% Similarity=0.110 Sum_probs=79.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC-
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN- 171 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~- 171 (378)
++|.+.|- .|||||++=|++.+...|.+|++.+.-. | |++ ++++++...+.+.-.-.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~---~----R~g-------------a~eQL~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT---Y----RIG-------------AVEQLKTYAEILGVPFYV 61 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST---S----STH-------------HHHHHHHHHHHHTEEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC---C----Ccc-------------HHHHHHHHHHHhccccch
Confidence 35556654 6899999999999998899999875421 1 111 33444444444331100
Q ss_pred --CCcCHHHHHHHHHHHHHHhcCCCEEEEee-CCCCCccc------ccccccCC-CcEEEEccCChhhHhhcCCCHHHHH
Q 017061 172 --GCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGARDA------TNIISSSG-LAASVITTIGEEHTAALGGSLETIA 241 (378)
Q Consensus 172 --~~~t~fE~~t~~a~~~f~~~~~d~~VlEv-g~gg~~D~------t~~~~~~~-p~vaVITNI~~DHld~lG~tle~ia 241 (378)
.....-++. .-++..+..+++|++++-+ |... .|. ..++.... .++-++.+-....- .++ .+
T Consensus 62 ~~~~~~~~~~~-~~~l~~~~~~~~D~vlIDT~Gr~~-~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-----~~~-~~ 133 (196)
T PF00448_consen 62 ARTESDPAEIA-REALEKFRKKGYDLVLIDTAGRSP-RDEELLEELKKLLEALNPDEVHLVLSATMGQE-----DLE-QA 133 (196)
T ss_dssp SSTTSCHHHHH-HHHHHHHHHTTSSEEEEEE-SSSS-THHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-----HHH-HH
T ss_pred hhcchhhHHHH-HHHHHHHhhcCCCEEEEecCCcch-hhHHHHHHHHHHhhhcCCccceEEEecccChH-----HHH-HH
Confidence 000111111 1134456678899999999 4333 221 12222111 23555555444332 233 23
Q ss_pred HHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEec
Q 017061 242 MAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAY 283 (378)
Q Consensus 242 ~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~ 283 (378)
..+...+...+.+++- -|.-.....+-..+.+.+.|+.+++
T Consensus 134 ~~~~~~~~~~~lIlTK-lDet~~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 134 LAFYEAFGIDGLILTK-LDETARLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp HHHHHHSSTCEEEEES-TTSSSTTHHHHHHHHHHTSEEEEEE
T ss_pred HHHhhcccCceEEEEe-ecCCCCcccceeHHHHhCCCeEEEE
Confidence 3343444455555554 4442222233445556688888765
No 68
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=91.96 E-value=0.24 Score=46.57 Aligned_cols=32 Identities=31% Similarity=0.334 Sum_probs=27.3
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|+|. |-.||||++.-|+..|.+.|+||.+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 345555 67899999999999999999999875
No 69
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.91 E-value=4.9 Score=40.89 Aligned_cols=34 Identities=26% Similarity=0.190 Sum_probs=27.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH--HcCCceEeeeC
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILR--AEGYSVGCYTS 128 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~--~~G~~vg~~tS 128 (378)
++|.+.|- .|||||+..|+..+. ..|++|++++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 57888885 689999999998886 56899998754
No 70
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=91.86 E-value=0.44 Score=46.61 Aligned_cols=48 Identities=27% Similarity=0.443 Sum_probs=37.0
Q ss_pred HHHHHHHhCCC---CCCCcEEEE----eCCCChHHHHHHHHHHHHHcCCceEeee
Q 017061 80 MNRLMDRLGNP---HSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 80 ~~~ll~~lg~p---~~~~~~I~V----TGTnGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+++.+=+.|.. ....|+|.| .|-.|||.++.+|+..|++.|++|++.+
T Consensus 32 ~R~~~y~~~~~~~~~~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils 86 (325)
T PRK00652 32 LRRLLYRLGLKKPYRAPVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS 86 (325)
T ss_pred HHHHHHHhCCCcccCCCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC
Confidence 44444444432 235678998 7999999999999999999999999864
No 71
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=91.64 E-value=0.76 Score=38.76 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=25.5
Q ss_pred EEEeCC-CChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIAGT-KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VTGT-nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+-|||+ .|||+++.-+...|++.|++|+.|
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~ 33 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPL 33 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEE
Confidence 345554 799999999999999999999875
No 72
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.52 E-value=0.29 Score=41.78 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=26.3
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|+|+|.|- .||||.+..|-..|.+.|++|+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 57899996 799999999999999999999965
No 73
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.34 E-value=0.33 Score=37.08 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=26.4
Q ss_pred EEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 97 I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
|.|+|. .||||++..++..|.+.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 566665 6999999999999999999997753
No 74
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=91.27 E-value=2.7 Score=40.59 Aligned_cols=159 Identities=21% Similarity=0.167 Sum_probs=75.7
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCcc--cccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPHI--KTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAI 167 (378)
Q Consensus 93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~l--~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~ 167 (378)
+.++|++-|| -||=||+.+|...|++.|+++++..|-.. .--.. |.++..
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~-------Gv~iDa------------------ 165 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGY-------GVPIDA------------------ 165 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSE-------C--GGG------------------
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecC-------Ceeccc------------------
Confidence 6689999998 79999999999999999999998765431 10222 222210
Q ss_pred hhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEee--CCCCCcc---cccccccCCCcEEEE-ccCChhhHhhcC----CCH
Q 017061 168 RLENGCITHFEVLTAMAFALFAQNHVDIAVIEA--GLGGARD---ATNIISSSGLAASVI-TTIGEEHTAALG----GSL 237 (378)
Q Consensus 168 ~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv--g~gg~~D---~t~~~~~~~p~vaVI-TNI~~DHld~lG----~tl 237 (378)
-++.|=...+-.+..-..++.||.|+|- ++....- ...++...+|+.-|+ ..-++-|++-|- .++
T Consensus 166 -----v~~DFvaGavE~~v~~~~~~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l 240 (301)
T PF07755_consen 166 -----VPSDFVAGAVEALVPEAAEEHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYPIPPL 240 (301)
T ss_dssp -----SBGGGHHHHHHHHHHHHCCC-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC---H
T ss_pred -----hhhhhHHHHHHHHHHhhCcCCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCCCCCH
Confidence 0111111111111222232449999996 2222211 123444456775444 344445554321 466
Q ss_pred HHHHHHHhccccC--CCeEE---EcC--CCChhHHHHHHHHHHhhCCeEEE
Q 017061 238 ETIAMAKSGIIKY--GRPLV---LGG--PFLPHIEHILRDEASLMCSQVVS 281 (378)
Q Consensus 238 e~ia~~Ka~Iik~--~~~~V---~~~--~d~~~~~~vl~~~a~~~~~~~~~ 281 (378)
++..+.-..+-.. ...+| +|. .+++++...+++..++.+.|+..
T Consensus 241 ~~~I~l~e~la~~~~~~~VvgIslNt~~l~~~e~~~~~~~~~~e~glPv~D 291 (301)
T PF07755_consen 241 EEEIELIEALAGTKPPAKVVGISLNTSGLSEEEAKAAIERIEEELGLPVTD 291 (301)
T ss_dssp HHHHHHHHHCCCGC---EEEEEECC-TTS-HHHHHHHHHHHHHHH-S-EE-
T ss_pred HHHHHHHHHhhccCCCccEEEEEEECCCCCHHHHHHHHHHHHHHHCCCeee
Confidence 6666644444332 22222 341 23455667777788888887763
No 75
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=91.25 E-value=2.5 Score=43.63 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.9
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHHc
Q 017061 93 KFKTVHIAGT---KGKGSTAAFLSSILRAE 119 (378)
Q Consensus 93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~ 119 (378)
+.+.|-|||| .|||+++..|.+.|+..
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 4677999998 79999999999999974
No 76
>PRK06761 hypothetical protein; Provisional
Probab=91.03 E-value=7 Score=37.51 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=45.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLD 164 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~ 164 (378)
++|.|+|- .||||++..|+.-|...|+++..+.-+......+ ... +..++++++...+.......+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d--~~~--~~~~~~eer~~~l~~~~~f~~ 71 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPAD--YDG--VACFTKEEFDRLLSNYPDFKE 71 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchh--hcc--ccCCCHHHHHHHHHhhhHHHH
Confidence 57899984 8999999999999998899887764432111111 112 456788888888777666443
No 77
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=90.96 E-value=0.33 Score=45.94 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=28.3
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|+|+ |-.|||||+.-|+..|.+.|+||.+.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 567777 45899999999999999999999886
No 78
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=90.92 E-value=1.5 Score=44.60 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=27.2
Q ss_pred EEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.|-|||| .|||+++..|.+.|++.|++|..|
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~ 36 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPA 36 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEE
Confidence 4667776 799999999999999999999765
No 79
>COG2403 Predicted GTPase [General function prediction only]
Probab=90.70 E-value=0.33 Score=47.78 Aligned_cols=39 Identities=26% Similarity=0.518 Sum_probs=34.9
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCcc
Q 017061 93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPHI 131 (378)
Q Consensus 93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~l 131 (378)
..|+|.|+|| .|||+++++++.+|++.||++....=|-+
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmi 166 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMI 166 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCce
Confidence 4589999998 89999999999999999999998877754
No 80
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=90.65 E-value=0.61 Score=45.51 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCCCCCcEEEE----eCCCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 78 GRMNRLMDRLGNPHSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~~~~I~V----TGTnGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
...++.+.+.|...-..|+|.| .|-||||-++-+|+..|++.|+++|.++=
T Consensus 31 ~~~r~~~~~~g~~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSR 85 (336)
T COG1663 31 AGLRRKLAKKGSYRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSR 85 (336)
T ss_pred HHHHHHHhccccccCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEec
Confidence 4466666666633456788876 59999999999999999999999998753
No 81
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=90.39 E-value=0.73 Score=43.58 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhCC--CCCCCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 77 LGRMNRLMDRLGN--PHSKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 77 L~r~~~ll~~lg~--p~~~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.|.++.+...+.. .....++|.|| |--||||++..++..|.+.|++|.++
T Consensus 84 ~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 84 VEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3556666666543 34567899999 55899999999999999999999774
No 82
>COG4240 Predicted kinase [General function prediction only]
Probab=90.36 E-value=0.62 Score=43.20 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=28.7
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcC-CceEee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEG-YSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G-~~vg~~ 126 (378)
.-+++|.|. .||||++..|..+|.+.| ++|+.+
T Consensus 50 Pli~gisGpQGSGKStls~~i~~~L~~kg~ert~~l 85 (300)
T COG4240 50 PLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL 85 (300)
T ss_pred ceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEe
Confidence 358999997 899999999999999988 688764
No 83
>PHA02518 ParA-like protein; Provisional
Probab=90.23 E-value=0.46 Score=42.66 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=26.5
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+|+|+ |-.||||++..|+..|.+.|++|.+.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlli 35 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLV 35 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 45555 66889999999999999999999874
No 84
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=90.01 E-value=0.48 Score=43.06 Aligned_cols=31 Identities=32% Similarity=0.297 Sum_probs=27.1
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+|+|+| -.||||++..|+..|.+.|+||.+.
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 577775 5799999999999999999999876
No 85
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=90.01 E-value=0.51 Score=46.97 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=33.3
Q ss_pred CCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 90 PHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 90 p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
+..+.++|+|+|. .||||...-|-..|++.|++|+..-.
T Consensus 201 ~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh 241 (366)
T PRK14489 201 TTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKH 241 (366)
T ss_pred cCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 3346789999995 89999999999999999999998643
No 86
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=89.90 E-value=0.48 Score=43.82 Aligned_cols=33 Identities=39% Similarity=0.643 Sum_probs=30.0
Q ss_pred CcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+.+-|||| -|||.+++.|.+.|+..|++|+.|
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~ 37 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGY 37 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEE
Confidence 367899999 699999999999999999999876
No 87
>PRK05439 pantothenate kinase; Provisional
Probab=89.86 E-value=0.93 Score=44.08 Aligned_cols=41 Identities=32% Similarity=0.306 Sum_probs=30.5
Q ss_pred hCCCCC-CCcEEEEeCC--CChHHHHHHHHHHHHHc--CCceEeee
Q 017061 87 LGNPHS-KFKTVHIAGT--KGKGSTAAFLSSILRAE--GYSVGCYT 127 (378)
Q Consensus 87 lg~p~~-~~~~I~VTGT--nGKtSTt~~l~~iL~~~--G~~vg~~t 127 (378)
|+.+.. ..-+|+|||+ .||||++..|..+|... |.+|.+.+
T Consensus 78 l~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 78 LGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred hcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 453333 3348999997 88999999999999864 66776653
No 88
>PRK14974 cell division protein FtsY; Provisional
Probab=89.79 E-value=6.4 Score=38.72 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=29.8
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..+|.++|. .|||||++.++..|...|++|++.+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~ 175 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA 175 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 468999997 6799999999999999999998754
No 89
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=89.55 E-value=0.52 Score=44.63 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=27.8
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|+|+ |-.|||||+.-|+..|.+.|+||.+.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 467777 45789999999999999999999886
No 90
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.50 E-value=0.73 Score=40.45 Aligned_cols=39 Identities=28% Similarity=0.595 Sum_probs=33.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcccc
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKT 133 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~ 133 (378)
--|+|||- .||||.+.-|+..|+..||+||=|-+|.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 46999996 8899999999999999999998887776543
No 91
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=89.37 E-value=0.45 Score=43.79 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=28.9
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|.|| |--|||||++-|...|...|+||.+.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~li 37 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLI 37 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEE
Confidence 578888 67899999999999999999999875
No 92
>PRK10037 cell division protein; Provisional
Probab=89.23 E-value=0.58 Score=43.72 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=28.1
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|+|+ |-.|||||+.-|+..|.+.|+||.+.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 467777 56899999999999999999999876
No 93
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=89.05 E-value=0.6 Score=41.89 Aligned_cols=32 Identities=38% Similarity=0.582 Sum_probs=28.3
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.|-|+|| .|||+++..|.+.|++.|.+|+.|
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~ 35 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYF 35 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 35778888 799999999999999999999976
No 94
>PRK06696 uridine kinase; Validated
Probab=88.98 E-value=1.1 Score=41.26 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCC-CCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 78 GRMNRLMDRLGN-PHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 78 ~r~~~ll~~lg~-p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+.+.++.+.+.. ...+..+|+|+|- .||||.+..|+..|.+.|.++..
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 344555555432 1234569999984 89999999999999998877654
No 95
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=88.94 E-value=0.62 Score=44.27 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=27.8
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|+|+ |-.|||||+.-|+..|.+.|+||.+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 466676 56899999999999999999999776
No 96
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=88.93 E-value=0.64 Score=42.89 Aligned_cols=32 Identities=34% Similarity=0.361 Sum_probs=28.0
Q ss_pred cEEEEeC---CCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTG---TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|.|++ -.||||++.-|+..|.+.|+||.+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli 36 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI 36 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 5677764 6899999999999999999999875
No 97
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=88.82 E-value=0.57 Score=44.54 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=28.1
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+|+|||. .||||++..+.++|...|.++.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~ 34 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 5899997 7899999999999999998887654
No 98
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=88.80 E-value=0.65 Score=43.13 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=27.8
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|.|+ |-.|||||+..|+..|.+.|++|.+.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vlli 36 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALF 36 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 567777 55789999999999999999999874
No 99
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=88.62 E-value=0.77 Score=40.11 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=29.3
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
++|+|+|. .||||.+..|...|...|++|+.+-
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK 36 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIK 36 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 68999994 8999999999999999999998853
No 100
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=88.54 E-value=0.66 Score=43.71 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=27.7
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|+|+ |-.|||||+.-|++.|.+.|+||.+.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLli 36 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQI 36 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 466666 56899999999999999999999875
No 101
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=88.49 E-value=3.6 Score=44.43 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=28.3
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+.|-|+|| .|||+++.-|.+.|++.|++||.|-
T Consensus 3 k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 3 RSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 34666665 8999999999999999999999874
No 102
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=88.46 E-value=0.68 Score=43.62 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=26.6
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+|+|+ |-.||||++.-|++.|.+.|+||.+.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 45666 56899999999999999999999775
No 103
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=88.40 E-value=0.76 Score=42.69 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=31.0
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
+++|.|+| -.||||++.-|...|+..|++|+.+-..
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 36899999 5899999999999999999999997543
No 104
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=88.40 E-value=0.57 Score=42.00 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=24.7
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHHcCCc
Q 017061 96 TVHIAG--TKGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 96 ~I~VTG--TnGKtSTt~~l~~iL~~~G~~ 122 (378)
+|+|+| ..||||++..|..+|.+.|.+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 689998 489999999999999998877
No 105
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=88.30 E-value=0.68 Score=43.79 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=27.2
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+|+|. |-.||||+|.-|+..|.+.|++|.+.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 56666 46899999999999999999999886
No 106
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=88.25 E-value=0.7 Score=40.16 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=27.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+|+|+|. .||||++..|...|+..|++|+.+-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4778884 7899999999999999999998864
No 107
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=88.22 E-value=0.7 Score=42.91 Aligned_cols=32 Identities=28% Similarity=0.275 Sum_probs=28.1
Q ss_pred cEEEEeC---CCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTG---TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|+|++ -.||||++..++..|.+.|++|.++
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLI 36 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence 5777875 5889999999999999999999886
No 108
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=88.18 E-value=0.73 Score=44.43 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=26.7
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+|+|. |--|||||+..|+..|.+.|+||.+.
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlI 34 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQL 34 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45555 56899999999999999999999775
No 109
>PRK11670 antiporter inner membrane protein; Provisional
Probab=87.88 E-value=0.74 Score=45.90 Aligned_cols=33 Identities=39% Similarity=0.471 Sum_probs=29.7
Q ss_pred CcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.++|+|+ |-.|||||+.-|+..|.+.|+||++.
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLI 142 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL 142 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4689998 56899999999999999999999886
No 110
>PRK13236 nitrogenase reductase; Reviewed
Probab=87.65 E-value=0.9 Score=43.77 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=30.5
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061 92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.++++|.|.| -.|||||+.-|+..|.+.|+||.++
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4567788874 5899999999999999999999987
No 111
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=87.64 E-value=0.81 Score=40.62 Aligned_cols=32 Identities=38% Similarity=0.405 Sum_probs=27.7
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+|+|+|. .||||.+..|...|...|.++..+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~ 34 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4889986 8999999999999999898887653
No 112
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=87.60 E-value=1.8 Score=42.07 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHhC-CCCCCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 76 DLGRMNRLMDRLG-NPHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 76 ~L~r~~~ll~~lg-~p~~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+-+.+..++..+. .+..+.++|+|+|. -||||++.-|+..|.+.|++|.+.
T Consensus 74 ~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLv 128 (322)
T TIGR03815 74 AEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLV 128 (322)
T ss_pred CHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 4455566666664 44556789999865 789999999999999999999875
No 113
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=87.58 E-value=9.3 Score=34.82 Aligned_cols=28 Identities=32% Similarity=0.279 Sum_probs=24.4
Q ss_pred CCCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 101 GTKGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 101 GTnGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
|-.||||++..++..+.+.|++|.++..
T Consensus 8 ~g~Gkt~~~~~la~~~a~~g~~~~l~~~ 35 (217)
T cd02035 8 GGVGKTTIAAATAVRLAEEGKKVLLVST 35 (217)
T ss_pred CCchHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3479999999999999999999988743
No 114
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=87.39 E-value=1.8 Score=42.11 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=31.3
Q ss_pred CCcEEEEe----CCCChHHHHHHHHHHHHHcCCceEeee
Q 017061 93 KFKTVHIA----GTKGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VT----GTnGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..|+|.|- |-.|||.++.+|+..|++.|+++++.+
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 65 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS 65 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC
Confidence 56788884 889999999999999999999999865
No 115
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=87.35 E-value=0.94 Score=43.61 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCcEEEEe--CCCChHHHHHHHHHHHHHcCCceEee-eCCc
Q 017061 93 KFKTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY-TSPH 130 (378)
Q Consensus 93 ~~~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~-tSp~ 130 (378)
++++|+|. |--|||||+.-|+..|.+.|+||.++ .-|+
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 45677776 46889999999999999999999887 4443
No 116
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=87.32 E-value=1.1 Score=43.93 Aligned_cols=35 Identities=31% Similarity=0.279 Sum_probs=31.2
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061 92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++.++|.|+| .-||||++..|+..|.+.|++|++.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4678898885 6899999999999999999999886
No 117
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=87.19 E-value=0.63 Score=41.23 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceE
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg 124 (378)
+.|+|||| .||||+|..|+ ..|+++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH----HhCCcee
Confidence 36999999 78999998887 4467663
No 118
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.80 E-value=2.8 Score=41.81 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=28.5
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..+|-+.|- .||||||.-++..++..||++++..
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc 136 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC 136 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe
Confidence 346777774 5799999999999999999999854
No 119
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.66 E-value=8.6 Score=38.98 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=52.5
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh---
Q 017061 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL--- 169 (378)
Q Consensus 95 ~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~--- 169 (378)
.+|-..| -.||||||.=|+.-|+..|++|++...-. =.| .++++++...++..-.
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~-------------~Rp-------AA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADT-------------YRP-------AAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEeccc-------------CCh-------HHHHHHHHHHHHcCCceec
Confidence 4677777 38999999999999999999999854311 111 1334444443333221
Q ss_pred cCCCcCHHHHHHHHHHHHHHhcCCCEEEEee
Q 017061 170 ENGCITHFEVLTAMAFALFAQNHVDIAVIEA 200 (378)
Q Consensus 170 ~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEv 200 (378)
.....+..|+ .--|+..+....+|++++-+
T Consensus 161 ~~~~~~Pv~I-ak~al~~ak~~~~DvvIvDT 190 (451)
T COG0541 161 SGTEKDPVEI-AKAALEKAKEEGYDVVIVDT 190 (451)
T ss_pred CCCCCCHHHH-HHHHHHHHHHcCCCEEEEeC
Confidence 1112334443 23466677778888888777
No 120
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=86.62 E-value=1.1 Score=41.48 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=26.9
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+|+|+ |-.||||++.-|+..|.+.|++|.++
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vlli 35 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLAL 35 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 55565 56899999999999999999999886
No 121
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=86.59 E-value=1 Score=41.62 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=27.6
Q ss_pred EEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.|-|||| .|||+++..|.+.|++.|++|+.|
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~ 37 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGY 37 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4667766 899999999999999999999986
No 122
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=86.57 E-value=0.98 Score=42.72 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=27.2
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHH-cCCceEee
Q 017061 95 KTVHIA--GTKGKGSTAAFLSSILRA-EGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT--GTnGKtSTt~~l~~iL~~-~G~~vg~~ 126 (378)
++|+|+ |-.|||||+.-|+..|.+ .|+||.++
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 567777 567899999999999997 69999886
No 123
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=86.52 E-value=0.92 Score=42.61 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=25.1
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+|.|+ |-.|||||+.=|+..|...|++||+.
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~l 35 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLL 35 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45665 67899999999999999999999985
No 124
>PRK00784 cobyric acid synthase; Provisional
Probab=86.22 E-value=0.87 Score=47.14 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=29.4
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+.|-|||| .|||+++..|...|++.|++|+.|-
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K 38 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK 38 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence 46888888 8999999999999999999998763
No 125
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=86.18 E-value=1 Score=41.13 Aligned_cols=30 Identities=43% Similarity=0.675 Sum_probs=26.3
Q ss_pred EEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|-|||| .|||+++..|.+.|++.|++|+.|
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~ 34 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGY 34 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEE
Confidence 456665 799999999999999999999876
No 126
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=86.12 E-value=0.89 Score=40.03 Aligned_cols=30 Identities=30% Similarity=0.223 Sum_probs=25.0
Q ss_pred EEEeCCCChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+.-|-.||||++..|+..|...|++|.++
T Consensus 4 ~~~kGG~GKTt~a~~la~~la~~g~~Vlli 33 (195)
T PF01656_consen 4 TSGKGGVGKTTIAANLAQALARKGKKVLLI 33 (195)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred EcCCCCccHHHHHHHHHhcccccccccccc
Confidence 344467899999999999999999999885
No 127
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=85.80 E-value=11 Score=36.86 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=62.1
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCcccccce-----------EEeeCCCCcccCHH-HHHHHHHHHH
Q 017061 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE-----------RMNVGRLNRPVSAK-ALNCLFHKIK 160 (378)
Q Consensus 95 ~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~e-----------ri~in~~G~~is~~-~~~~~~~~~~ 160 (378)
++|-++| --||||+++.++.-|.+.|.+|-+.++.--.+... +|.-|-.+..++.. .+.+..+++.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v~ 82 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEVK 82 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHHH
Confidence 5667774 69999999999999999998887775432222222 12212123334333 3444445555
Q ss_pred HHHHHHHhhc----------CCCcCHHHHHHHHHHHHH-HhcCCCEEEEeeC
Q 017061 161 GVLDEAIRLE----------NGCITHFEVLTAMAFALF-AQNHVDIAVIEAG 201 (378)
Q Consensus 161 ~~~~~~~~~~----------~~~~t~fE~~t~~a~~~f-~~~~~d~~VlEvg 201 (378)
.......... ...|..=|+....++.-+ .....|++|+-+-
T Consensus 83 ~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~Dta 134 (322)
T COG0003 83 DYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTA 134 (322)
T ss_pred HHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 4433332211 124666666666555543 4566899999984
No 128
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=85.70 E-value=2.1 Score=41.21 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=27.9
Q ss_pred hCCCC-CCCcEEEEeCC--CChHHHHHHHHHHHHHc--CCceEee
Q 017061 87 LGNPH-SKFKTVHIAGT--KGKGSTAAFLSSILRAE--GYSVGCY 126 (378)
Q Consensus 87 lg~p~-~~~~~I~VTGT--nGKtSTt~~l~~iL~~~--G~~vg~~ 126 (378)
++.+. +..-+|+|+|. .||||++.+|..+|... +-+|.++
T Consensus 54 ~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi 98 (290)
T TIGR00554 54 LGTNGAKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELI 98 (290)
T ss_pred HhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEE
Confidence 44443 23458999997 58999999999999853 2245443
No 129
>CHL00175 minD septum-site determining protein; Validated
Probab=85.25 E-value=1.4 Score=41.84 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=29.2
Q ss_pred CcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.++|.|++. .||||++.-|+..|.+.|++|.++
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 468888864 799999999999999999999886
No 130
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=85.18 E-value=1.2 Score=42.29 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.5
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+|.|+ |--|||||+..|+..|...|++||++
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglL 82 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLL 82 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEE
Confidence 367776 77999999999999999999999986
No 131
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=84.90 E-value=1.1 Score=42.07 Aligned_cols=31 Identities=32% Similarity=0.196 Sum_probs=26.1
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++++.|-.||||+++-|++.|...|.+|-..
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVLAI 36 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4455566899999999999999999999664
No 132
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=84.87 E-value=2.6 Score=41.53 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=37.1
Q ss_pred HHHHHHHHhCC---CCCCCcEEEE----eCCCChHHHHHHHHHHHHHcCCceEeee
Q 017061 79 RMNRLMDRLGN---PHSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 79 r~~~ll~~lg~---p~~~~~~I~V----TGTnGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
++++.+-+.|. .....|+|.| .|-.|||-++.+|+..|++.|++|++.+
T Consensus 38 ~lR~~~y~~g~~~~~~~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 93 (338)
T PRK01906 38 ALRRAAYARGWKKSVRLGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS 93 (338)
T ss_pred HHHHHHHhhcccccccCCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEe
Confidence 34555544442 2235678887 4889999999999999999999999865
No 133
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=84.79 E-value=0.91 Score=39.37 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=21.9
Q ss_pred CCCCCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 90 PHSKFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 90 p~~~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
|.+..|-|.|||| .||||++..|+..+
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4455678999999 78999999999554
No 134
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=84.66 E-value=1.2 Score=38.60 Aligned_cols=24 Identities=42% Similarity=0.706 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHHHHHcCCceEee
Q 017061 103 KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 103 nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.|||+++.-|+..|++.|++|+++
T Consensus 9 ~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 9 VGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred ccHHHHHHHHHHHHHHCCCcEEEE
Confidence 799999999999999999999885
No 135
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=84.27 E-value=2.5 Score=43.13 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=29.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..+|.++|- .|||||++-|+..|.+.|++|++.+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 457888885 7899999999999999999998753
No 136
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.27 E-value=1.5 Score=41.58 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=29.8
Q ss_pred CCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
..++|.|+ |--|||||+..|+..|.+.|+||++.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlli 92 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLL 92 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence 45678888 45799999999999999999999986
No 137
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=84.24 E-value=1.4 Score=38.31 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=23.8
Q ss_pred CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 101 GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 101 GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|--||||++.-|+..|.+.|++|.+.
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllv 34 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLL 34 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEE
Confidence 66899999999999999999999874
No 138
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=84.06 E-value=1.3 Score=45.40 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=26.8
Q ss_pred EEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061 97 VHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 97 I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
|-|||| .|||+++..|...|++.|++|+.|-
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK 35 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFK 35 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence 456665 8999999999999999999998873
No 139
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=83.90 E-value=0.81 Score=43.02 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=26.2
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|+|. |-.|||||+.-|++.|.+.| +|.+.
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEE
Confidence 456665 66899999999999999999 99775
No 140
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=83.89 E-value=1.4 Score=38.27 Aligned_cols=28 Identities=36% Similarity=0.351 Sum_probs=24.9
Q ss_pred EeCCCChHHHHHHHHHHHHHcCCceEee
Q 017061 99 IAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 99 VTGTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
-.|-.||||++..|+..|.+.|++|.+.
T Consensus 7 ~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 7 GKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3467899999999999999999999875
No 141
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=83.86 E-value=1.7 Score=44.10 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=31.9
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
+++|+|+| -.||||.+.-|-..|+..||+|+++-..|
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 46899999 58999999999999999999999975443
No 142
>PRK10818 cell division inhibitor MinD; Provisional
Probab=83.84 E-value=1.6 Score=41.02 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=27.6
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|+|+ |-.||||++..|+..|.+.|++|.+.
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllv 37 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 567776 45899999999999999999999774
No 143
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=83.78 E-value=2 Score=38.19 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=30.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..++|+|+|- .||||...-|...|...|++||..-
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence 5679999994 7999999999999999999998864
No 144
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=83.66 E-value=1.7 Score=41.46 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=29.6
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
+++|+|+| -.||||.+.-|...|++.| +|++.-.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 36899999 6899999999999999999 8988643
No 145
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.28 E-value=1.8 Score=42.32 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=28.7
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHHcCCceEe
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+.-+|.+.|.| |||||.+=|++.|.+.|++|-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll 172 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL 172 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE
Confidence 35578888886 6999999999999999999966
No 146
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=83.25 E-value=1.3 Score=40.50 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=32.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
...|.|-|- .||||.+.+|...|++.|++|.+..-|.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~ 41 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG 41 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 357999996 8999999999999999999998776664
No 147
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=82.83 E-value=2.3 Score=36.08 Aligned_cols=53 Identities=26% Similarity=0.298 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCccc
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIK 132 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~ 132 (378)
+.+.+.++.+.++.--..-.+|.+.|. .||||.+..+...| |.. ...+||...
T Consensus 4 s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l---g~~-~~v~SPTf~ 58 (133)
T TIGR00150 4 DEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL---GIQ-GNVTSPTFT 58 (133)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc---CCC-CcccCCCee
Confidence 467788888888765455578999997 78999888888777 432 246888743
No 148
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=82.82 E-value=2.4 Score=37.33 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=28.7
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
+|.|.|. .||||.+..|+..|...|+++.....|
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 6888885 799999999999999999998665444
No 149
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=82.78 E-value=2.3 Score=43.16 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=30.0
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
..+|.++|- .|||||++-|+..|+..|++|++.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 458899985 78999999999999999999988643
No 150
>PLN02422 dephospho-CoA kinase
Probab=82.49 E-value=37 Score=31.61 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=20.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
++|+|||. .||||++.++. +.|+.+
T Consensus 2 ~~igltG~igsGKstv~~~l~----~~g~~~ 28 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK----SSGIPV 28 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH----HCCCeE
Confidence 47999996 89999999887 357765
No 151
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=82.47 E-value=1.4 Score=41.50 Aligned_cols=26 Identities=31% Similarity=0.252 Sum_probs=23.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 101 GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 101 GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|-.||||||.-|+..|.+.|+||.+.
T Consensus 9 GGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 9 GGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 67899999999999999999999775
No 152
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=82.10 E-value=1.4 Score=45.44 Aligned_cols=31 Identities=39% Similarity=0.563 Sum_probs=27.1
Q ss_pred EEeCC---CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 98 HIAGT---KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 98 ~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
-|||| .|||.++..|..+|++.|++|+-|-.
T Consensus 2 ~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 2 MVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 46666 89999999999999999999997754
No 153
>PLN02796 D-glycerate 3-kinase
Probab=81.99 E-value=5.6 Score=39.26 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=27.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
-+|+|+|. .||||++..|..+|...|++++.+
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~I 134 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASL 134 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEE
Confidence 47999996 789999999999998888877764
No 154
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=81.95 E-value=3.7 Score=40.21 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=33.3
Q ss_pred CCCCcEEEE----eCCCChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 91 HSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 91 ~~~~~~I~V----TGTnGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
....|+|.| +|-.|||-++.+|+..|++.|+++++.+-.
T Consensus 32 ~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRG 74 (326)
T PF02606_consen 32 RLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRG 74 (326)
T ss_pred CCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCC
Confidence 346788887 488999999999999999999999987543
No 155
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=81.62 E-value=3.7 Score=39.27 Aligned_cols=41 Identities=34% Similarity=0.477 Sum_probs=27.6
Q ss_pred HHHHHHhCCCCC----CCcEEEEeCCCChHHHHHHHHHHHHHcCCc
Q 017061 81 NRLMDRLGNPHS----KFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 81 ~~ll~~lg~p~~----~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~ 122 (378)
.++...+|.+.. .+-+.|=+|| |||+++..++..|...|+.
T Consensus 44 ~~~r~~~g~~~~~~~~~vll~G~pGT-GKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 44 ERLRQRLGLASAAPTLHMSFTGNPGT-GKTTVALRMAQILHRLGYV 88 (284)
T ss_pred HHHHHHhCCCcCCCCceEEEEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence 344445665432 2224455677 9999999999999988764
No 156
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=81.40 E-value=2.6 Score=38.76 Aligned_cols=32 Identities=38% Similarity=0.358 Sum_probs=25.8
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEe
Q 017061 92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 92 ~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
.+.-+|+|+| ..||||.+..|...|... ++++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~ 39 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVV 39 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceE
Confidence 4556899998 489999999999999855 4544
No 157
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=81.21 E-value=2.1 Score=39.40 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=24.0
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHH--cCCceEe
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRA--EGYSVGC 125 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~--~G~~vg~ 125 (378)
+|+|+|. .||||++..|...|.. .+.++.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 5899996 6899999999999986 4455554
No 158
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=81.20 E-value=2.6 Score=39.10 Aligned_cols=32 Identities=34% Similarity=0.393 Sum_probs=27.8
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|.++ |-.||||.+.+|++.|.+.|.+|.++
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lI 36 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALI 36 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 455555 67899999999999999999999987
No 159
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.96 E-value=2.5 Score=39.44 Aligned_cols=30 Identities=30% Similarity=0.265 Sum_probs=24.6
Q ss_pred EEEeCCCChHHHHHHHHHHHH-HcCCceEee
Q 017061 97 VHIAGTKGKGSTAAFLSSILR-AEGYSVGCY 126 (378)
Q Consensus 97 I~VTGTnGKtSTt~~l~~iL~-~~G~~vg~~ 126 (378)
+..-|-.|||||+-.++..|. ..|+||-+.
T Consensus 8 ~n~KGGvGKTT~a~nLa~~La~~~~~kVLli 38 (259)
T COG1192 8 ANQKGGVGKTTTAVNLAAALAKRGGKKVLLI 38 (259)
T ss_pred EecCCCccHHHHHHHHHHHHHHhcCCcEEEE
Confidence 334478999999999999999 566999775
No 160
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=80.61 E-value=1.8 Score=41.64 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=26.0
Q ss_pred EEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|+|+ |-.|||||+.-|+..|.+.|+||-+.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 5555 57899999999999999999999765
No 161
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=79.82 E-value=3.4 Score=36.61 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=28.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|.|.|. .||||.+.+|+.-|...|+++...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 57999996 899999999999999999988543
No 162
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=79.58 E-value=12 Score=35.60 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=25.9
Q ss_pred cCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhH
Q 017061 191 NHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHT 230 (378)
Q Consensus 191 ~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHl 230 (378)
...|++++-+|.|-..|....+...+ .+.++|+-..+-.
T Consensus 111 ~~~D~iliD~~aGl~~~~~~~~~~sd-~~viVt~pe~~si 149 (262)
T COG0455 111 ELYDYILIDTGAGLSRDTLSFILSSD-ELVIVTTPEPTSI 149 (262)
T ss_pred hcCCEEEEeCCCCccHHHHHHHHhcC-cEEEEeCCCcchH
Confidence 44599999998876666654443332 4677787766544
No 163
>PLN02924 thymidylate kinase
Probab=79.54 E-value=3.9 Score=37.65 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=31.0
Q ss_pred CCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 90 PHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 90 p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
|+...+.|.|.|- .||||-+.+|+.-|+..|++|-.
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~ 49 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAEL 49 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCcee
Confidence 4455678999995 89999999999999999999854
No 164
>PRK07933 thymidylate kinase; Validated
Probab=79.40 E-value=3.4 Score=37.72 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=29.6
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
+|.|-|. .||||.+.+|+.-|+..|++|.+..=|
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6888885 899999999999999999999876545
No 165
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=79.03 E-value=46 Score=34.99 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=27.7
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHc--CCceEeeeC
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAE--GYSVGCYTS 128 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~--G~~vg~~tS 128 (378)
.+..+|+|.|- .|||||+..|+..+... |.+|++++.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt 388 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT 388 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 34568888874 78999999998876553 578887654
No 166
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=78.82 E-value=2.1 Score=34.60 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=22.0
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+|.|+|. .||||++..|+.-| |+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i~ 29 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVIS 29 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEEE
Confidence 5889996 89999999999877 676543
No 167
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=78.64 E-value=3.7 Score=39.80 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=63.5
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHHcCCceEeeeC-C--cccc-c-----ceEEeeC--C--CCcccCH-HHHHHHHHH
Q 017061 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCYTS-P--HIKT-I-----RERMNVG--R--LNRPVSA-KALNCLFHK 158 (378)
Q Consensus 95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~tS-p--~l~~-~-----~eri~in--~--~G~~is~-~~~~~~~~~ 158 (378)
++|-++ |-.||||+++.++--+.+.|++|.+.++ | .|.+ + ++...+. . ....++. ..+.+...+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~~~ 81 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYWEE 81 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHHHH
Confidence 456666 5799999999999999999999988765 2 1111 1 1111222 0 0122333 234444444
Q ss_pred HHHHH---------HHHHhhcC-CCcCHHHHHHHHHHHHHH-hcCCCEEEEeeCCCC
Q 017061 159 IKGVL---------DEAIRLEN-GCITHFEVLTAMAFALFA-QNHVDIAVIEAGLGG 204 (378)
Q Consensus 159 ~~~~~---------~~~~~~~~-~~~t~fE~~t~~a~~~f~-~~~~d~~VlEvg~gg 204 (378)
+.... +++..... .-|..-|+..+..+.-.. ..+.|++|+-+...|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg 138 (305)
T PF02374_consen 82 VQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTG 138 (305)
T ss_dssp HHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSH
T ss_pred HHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcH
Confidence 44321 11111222 338888888887776554 588999999996544
No 168
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=78.64 E-value=5.2 Score=38.25 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=28.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHc-C-CceEeeeC
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAE-G-YSVGCYTS 128 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~-G-~~vg~~tS 128 (378)
+..+|.+.|- .|||||+..|+.-+... | ++|++++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 3458888885 78999999999988765 5 89988653
No 169
>PRK00889 adenylylsulfate kinase; Provisional
Probab=78.00 E-value=4.8 Score=35.14 Aligned_cols=33 Identities=36% Similarity=0.464 Sum_probs=27.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+..+|.|+|. .||||++..|+..|...|.++.+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~ 37 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEV 37 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3458999996 89999999999999988877754
No 170
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=77.98 E-value=19 Score=36.31 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=29.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHH--HcCCceEeeeCC
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILR--AEGYSVGCYTSP 129 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~--~~G~~vg~~tSp 129 (378)
+-++|..-|. .|||||.+=|++.+. ..-++||+.|+-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD 242 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD 242 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec
Confidence 3578888885 789999999999988 445799998763
No 171
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=77.80 E-value=3.5 Score=32.52 Aligned_cols=30 Identities=30% Similarity=0.275 Sum_probs=25.5
Q ss_pred EEEeCCCChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++--|--||||++..++..|.+.|.+|.+.
T Consensus 5 ~~~kgG~Gkst~~~~la~~~~~~~~~vl~~ 34 (104)
T cd02042 5 ANQKGGVGKTTTAVNLAAALARRGKRVLLI 34 (104)
T ss_pred EeCCCCcCHHHHHHHHHHHHHhCCCcEEEE
Confidence 444578899999999999999999998763
No 172
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=77.73 E-value=5.5 Score=43.37 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=31.7
Q ss_pred CCCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 91 ~~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
....++|.||++ .||||++.-|+..|...|+||.+.
T Consensus 528 ~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlI 566 (726)
T PRK09841 528 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 566 (726)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 346689999987 599999999999999999999875
No 173
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=76.02 E-value=5 Score=34.91 Aligned_cols=32 Identities=31% Similarity=0.348 Sum_probs=27.2
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
++.++|- .||||++..++..|.+.|.+|.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5677774 7999999999999999999998754
No 174
>PRK10867 signal recognition particle protein; Provisional
Probab=75.96 E-value=7.1 Score=39.82 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=28.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHc-CCceEeee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAE-GYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~-G~~vg~~t 127 (378)
..+|.++|- .|||||+.-|+..|... |++|.+.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~ 136 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA 136 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 457888885 78999999999999888 99998754
No 175
>PRK12377 putative replication protein; Provisional
Probab=75.96 E-value=3.8 Score=38.55 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=28.4
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
...+.+.|. .|||..+..|+..|...|++|..++.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 356777774 699999999999999999988654433
No 176
>PRK11519 tyrosine kinase; Provisional
Probab=75.38 E-value=7.2 Score=42.44 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=37.2
Q ss_pred HHHHHHHHHhC--CCCCCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 78 GRMNRLMDRLG--NPHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 78 ~r~~~ll~~lg--~p~~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|.++.+-..|. .+....++|.||++ -||||++.-|+..|...|.||.+.
T Consensus 508 Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlI 561 (719)
T PRK11519 508 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLI 561 (719)
T ss_pred HHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 44444444432 24456689999985 799999999999999999999875
No 177
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=75.02 E-value=3.9 Score=33.61 Aligned_cols=30 Identities=33% Similarity=0.441 Sum_probs=25.2
Q ss_pred EEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|.++ |..||||++..++..|.+.|++|.++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~i 33 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAI 33 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4555 46899999999999999999998764
No 178
>PRK10646 ADP-binding protein; Provisional
Probab=74.98 E-value=5.5 Score=34.63 Aligned_cols=53 Identities=21% Similarity=0.180 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcc
Q 017061 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHI 131 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l 131 (378)
.+.+.+.++.+.|+.--+.-.+|...|. .||||.+..|...| |.+ ...+||..
T Consensus 9 ~s~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~L---g~~-~~V~SPTF 63 (153)
T PRK10646 9 PDEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQAL---GHQ-GNVKSPTY 63 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCC-CCCCCCCE
Confidence 3577888888888765555568999997 89999888777766 543 34689963
No 179
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=74.79 E-value=3.6 Score=38.33 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=26.4
Q ss_pred EEEEeC--CCChHHHHHH-HHHHHHHcCCceEeeeC
Q 017061 96 TVHIAG--TKGKGSTAAF-LSSILRAEGYSVGCYTS 128 (378)
Q Consensus 96 ~I~VTG--TnGKtSTt~~-l~~iL~~~G~~vg~~tS 128 (378)
.|+||| -.||||.+++ +..++...||+|-..-+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDa 37 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDA 37 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 588995 6999999999 77777777799977543
No 180
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=74.61 E-value=7.8 Score=35.62 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=26.2
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
.+..+|+|+|- .||||.+..|...|...+-.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 45579999997 679999999999999866443
No 181
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=74.50 E-value=3.2 Score=37.04 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=19.7
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceE
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg 124 (378)
+|+|||. .||||++.+++. .|++|.
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~vi 28 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPVI 28 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EEE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCEE
Confidence 6999996 899999888765 687763
No 182
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=74.46 E-value=9.2 Score=35.87 Aligned_cols=36 Identities=39% Similarity=0.551 Sum_probs=29.2
Q ss_pred cEEEEeCC----CChHHHHHHHHHHHHHcCCceEee-eCCc
Q 017061 95 KTVHIAGT----KGKGSTAAFLSSILRAEGYSVGCY-TSPH 130 (378)
Q Consensus 95 ~~I~VTGT----nGKtSTt~~l~~iL~~~G~~vg~~-tSp~ 130 (378)
|.|-|||. =|||-|++-|..+|++.|++|... -.|+
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpY 41 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPY 41 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeeccc
Confidence 35778874 799999999999999999999653 3444
No 183
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=74.33 E-value=9.4 Score=38.82 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=28.5
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.-+|+|+|- .||||.+..|..+|+..|++++.+
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvI 246 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATL 246 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEE
Confidence 358999996 789999999999999888888764
No 184
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=73.96 E-value=5.5 Score=29.27 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=23.7
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+|.|+|. .||||.+..|+..| .|.++...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~ 32 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLD 32 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEe
Confidence 3778885 78999999999999 567776543
No 185
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=73.76 E-value=6.6 Score=34.21 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=28.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
.+|-+||. .||||.+..|..-|.+.|++|.+.-+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG 38 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC
Confidence 47889996 78999999999999999999977533
No 186
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=73.62 E-value=53 Score=27.48 Aligned_cols=30 Identities=27% Similarity=0.139 Sum_probs=25.2
Q ss_pred EEEeCCCChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
....|-.|||+++..++.-|...|.+|.++
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~v 34 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLL 34 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 334577899999999999999999998763
No 187
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=73.41 E-value=7.3 Score=42.54 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=31.0
Q ss_pred CCCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 91 ~~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
....++|.||++ -||||++.-|+..|...|++|.+.
T Consensus 543 ~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlI 581 (754)
T TIGR01005 543 VAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLI 581 (754)
T ss_pred CCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence 345678999965 799999999999999999999875
No 188
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=72.93 E-value=6.1 Score=33.47 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=26.1
Q ss_pred cEEEEeC---CCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTG---TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|+|+|.| .-|||+++..++..|.+.|.+|.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vlli 35 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLI 35 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 4677766 5799999999999999999998763
No 189
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=72.44 E-value=9.6 Score=38.80 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=27.3
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH-HcCCceEeee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILR-AEGYSVGCYT 127 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~-~~G~~vg~~t 127 (378)
.+|.++|. .|||||+.-|+..|. ..|++|.+.+
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~ 135 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA 135 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 47788885 789999999999987 5799998753
No 190
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=72.35 E-value=4.2 Score=37.00 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=21.4
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceE
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg 124 (378)
..+|+|||. .||||++.+++. .|++|.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~----~G~~vi 30 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE----LGFPVI 30 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH----cCCeEE
Confidence 358999996 999999887765 577763
No 191
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.37 E-value=47 Score=34.30 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=56.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhc
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLE 170 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~ 170 (378)
+.-+|.+.|-| ||+|.-+-|+--|.+.+++|-+- -++.+|-+ ++++++.+++.+....
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIA-------ACDTFRsG-------------AvEQLrtHv~rl~~l~ 436 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIA-------ACDTFRSG-------------AVEQLRTHVERLSALH 436 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhCCceEEEE-------eccchhhh-------------HHHHHHHHHHHHHHhc
Confidence 44578888876 69999999999999999998442 11222222 4567777777775443
Q ss_pred CCCcCHHHHH--------HHHHHHHHHhcCCCEEEEee
Q 017061 171 NGCITHFEVL--------TAMAFALFAQNHVDIAVIEA 200 (378)
Q Consensus 171 ~~~~t~fE~~--------t~~a~~~f~~~~~d~~VlEv 200 (378)
...+-.||-. .--|..+..+.+.|++.+.+
T Consensus 437 ~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDT 474 (587)
T KOG0781|consen 437 GTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDT 474 (587)
T ss_pred cchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEec
Confidence 3444445432 11245566778888888877
No 192
>PRK13973 thymidylate kinase; Provisional
Probab=70.93 E-value=4.7 Score=36.71 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=29.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
++|.|-|. .||||.+.+|+.-|...|++|-...=|
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p 40 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREP 40 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 57888996 899999999999999999998654334
No 193
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=70.74 E-value=11 Score=38.79 Aligned_cols=32 Identities=41% Similarity=0.582 Sum_probs=28.3
Q ss_pred cEEEEeC----CCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAG----TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTG----TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.|-||| +=|||-|++-|..+|++.|++|.+.
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~ 37 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQ 37 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEE
Confidence 5688887 5899999999999999999999764
No 194
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=70.62 E-value=7 Score=41.56 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=32.7
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 93 ~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
..++|+|.| -.||||...-|-..|++.|++|+.+-..|
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 468999999 48999999999999999999999976533
No 195
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=70.21 E-value=13 Score=38.46 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=26.5
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH-HcC-CceEeee
Q 017061 94 FKTVHIAGTK--GKGSTAAFLSSILR-AEG-YSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGTn--GKtSTt~~l~~iL~-~~G-~~vg~~t 127 (378)
..+|++.|-| |||||+..|+..+. ..| .+|++.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4688888874 79999999999884 455 5888754
No 196
>PRK13768 GTPase; Provisional
Probab=70.17 E-value=7 Score=36.71 Aligned_cols=32 Identities=34% Similarity=0.459 Sum_probs=27.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+|.|+|. .||||++.-++..|...|++|.++
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 35677764 899999999999999999999875
No 197
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.02 E-value=8.3 Score=38.73 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=30.7
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 93 ~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
+.++|.++| -.|||||+.-|+..+...|++|++++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIta 242 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITT 242 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 456889998 478999999999999888999998754
No 198
>PRK00698 tmk thymidylate kinase; Validated
Probab=69.88 E-value=9 Score=34.00 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=26.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
++|.|.|- .||||.+..|+.-|...|+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 58999995 89999999999999988876644
No 199
>PRK08233 hypothetical protein; Provisional
Probab=69.04 E-value=4.4 Score=35.22 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.7
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
..+|+|+|. .||||.+..|+..|.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 368999997 789999999998874
No 200
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=69.02 E-value=6.5 Score=31.52 Aligned_cols=27 Identities=33% Similarity=0.265 Sum_probs=23.7
Q ss_pred eCCCChHHHHHHHHHHHHHc-CCceEee
Q 017061 100 AGTKGKGSTAAFLSSILRAE-GYSVGCY 126 (378)
Q Consensus 100 TGTnGKtSTt~~l~~iL~~~-G~~vg~~ 126 (378)
-|.-||||++.-|+..+.+. |++|.+.
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~ 35 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLV 35 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEE
Confidence 36689999999999999998 9999874
No 201
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=68.91 E-value=6.6 Score=34.99 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=22.4
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+|+|+|- .||||++..|..+| .+.++.++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~ 31 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVII 31 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEE
Confidence 4889984 79999999999999 34455544
No 202
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=68.59 E-value=11 Score=33.25 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=28.1
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
...+|.|+| ..||||.+..|...|...|..+..+
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l 52 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVL 52 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 346899999 6999999999999998888765544
No 203
>PRK06835 DNA replication protein DnaC; Validated
Probab=68.58 E-value=8 Score=37.93 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=26.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
..+.+.|. .|||..+..|+.-|...|++|..++.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 44556553 599999999999888889988665443
No 204
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=67.83 E-value=3.4 Score=37.33 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=22.4
Q ss_pred CCCcEEEEeCCCChHHHH--HHHHHHHHHcCCce
Q 017061 92 SKFKTVHIAGTKGKGSTA--AFLSSILRAEGYSV 123 (378)
Q Consensus 92 ~~~~~I~VTGTnGKtSTt--~~l~~iL~~~G~~v 123 (378)
.+.|+|+|||+.|-|||+ .....|++....+.
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~a 36 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHA 36 (289)
T ss_pred CCCceEEEecCCCCCcccHHHHHHHHHHhcCccH
Confidence 467999999998876655 45556776654443
No 205
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=66.87 E-value=14 Score=38.52 Aligned_cols=36 Identities=36% Similarity=0.540 Sum_probs=30.2
Q ss_pred cEEEEeCC----CChHHHHHHHHHHHHHcCCceEee-eCCc
Q 017061 95 KTVHIAGT----KGKGSTAAFLSSILRAEGYSVGCY-TSPH 130 (378)
Q Consensus 95 ~~I~VTGT----nGKtSTt~~l~~iL~~~G~~vg~~-tSp~ 130 (378)
|.|-|||. =|||.|++-|..+|++.||+|... -.|+
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPY 42 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccc
Confidence 67889984 799999999999999999999763 3454
No 206
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=66.71 E-value=7.1 Score=36.98 Aligned_cols=32 Identities=38% Similarity=0.622 Sum_probs=26.1
Q ss_pred cEEEEeCC----CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT----KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT----nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|.|-|||- =|||-|++-|..+|++.|++|...
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~ 37 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMI 37 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeee
Confidence 57888884 799999999999999999999764
No 207
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=66.57 E-value=5.1 Score=34.49 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=16.6
Q ss_pred EEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 97 VHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 97 I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
|+|+|+ .||||++..|+.. |+.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~----g~~~ 26 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR----GYPV 26 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH----T-EE
T ss_pred EEEECCCCCCHHHHHHHHHHc----CCeE
Confidence 789996 8999999888866 7664
No 208
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.00 E-value=16 Score=36.69 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=26.1
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHH----cCCceEeee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRA----EGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~----~G~~vg~~t 127 (378)
..+|.+.|. .|||||++-|++.+.. .|.+|++.+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit 213 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT 213 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 346666765 6899999999998874 478898754
No 209
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=65.34 E-value=12 Score=32.84 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=30.9
Q ss_pred EEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcccccceEE
Q 017061 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERM 138 (378)
Q Consensus 97 I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri 138 (378)
|.|||- .||||...-+...|+..|++++=|.+|.+..-..|+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~ 45 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRI 45 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceE
Confidence 678996 799999999999999989988665555444444443
No 210
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.16 E-value=13 Score=37.89 Aligned_cols=34 Identities=35% Similarity=0.389 Sum_probs=27.1
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH-HHcCCceEeee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSIL-RAEGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL-~~~G~~vg~~t 127 (378)
..+|.|.|- .|||||+.-|+.-+ ...|++|++++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit 259 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT 259 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec
Confidence 357888885 78999999999754 56799998864
No 211
>PRK05380 pyrG CTP synthetase; Validated
Probab=63.39 E-value=17 Score=37.94 Aligned_cols=37 Identities=38% Similarity=0.525 Sum_probs=30.8
Q ss_pred CcEEEEeC----CCChHHHHHHHHHHHHHcCCceEee-eCCc
Q 017061 94 FKTVHIAG----TKGKGSTAAFLSSILRAEGYSVGCY-TSPH 130 (378)
Q Consensus 94 ~~~I~VTG----TnGKtSTt~~l~~iL~~~G~~vg~~-tSp~ 130 (378)
.|.|-||| +=|||-|++-|..+|++.|++|.+. -.|+
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpY 43 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 43 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccc
Confidence 46788998 4799999999999999999999763 3444
No 212
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=63.17 E-value=7.3 Score=34.31 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=20.0
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
+|+|||. .||||.+.+++. .|+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~ 26 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPV 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCE
Confidence 4899996 899999999887 47765
No 213
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=62.65 E-value=12 Score=38.66 Aligned_cols=47 Identities=26% Similarity=0.295 Sum_probs=34.9
Q ss_pred CCChHHHHHHHHHhCCCCCCCcEEEEeC------CCChHHHHHHHHHHHHHcCCceEe
Q 017061 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAG------TKGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 74 ~~~L~r~~~ll~~lg~p~~~~~~I~VTG------TnGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+.+++-+. ++.. .+..++|.||. --|||||+.-|+..|.+.|.+|.+
T Consensus 23 Ki~~~~~~----~~~~-~~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~ 75 (524)
T cd00477 23 KVDLDVLK----RLEK-RPDGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIA 75 (524)
T ss_pred eecHHHHh----hhcc-CCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEE
Confidence 45666544 3322 12457899999 359999999999999999998865
No 214
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=61.74 E-value=5.5 Score=41.12 Aligned_cols=97 Identities=15% Similarity=0.072 Sum_probs=58.5
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 017061 92 SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN 171 (378)
Q Consensus 92 ~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~ 171 (378)
...++|.|+|||||++++++.-..+...++++... + |.+--. ....++.++
T Consensus 62 ~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigv--------------T--GTNgKT-t~t~~~~~~------------ 112 (475)
T COG0769 62 AGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGV--------------T--GTNGKT-TTTSLLAQI------------ 112 (475)
T ss_pred cCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEE--------------c--CCCcHH-HHHHHHHHH------------
Confidence 34568999999999999999999987755666432 2 333311 111111110
Q ss_pred CCcCHHHHHHHHHHHHHHhcCCCEEEEeeC-C-CCCcccccccccCCCcEEEEccCChhhHhhcC
Q 017061 172 GCITHFEVLTAMAFALFAQNHVDIAVIEAG-L-GGARDATNIISSSGLAASVITTIGEEHTAALG 234 (378)
Q Consensus 172 ~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg-~-gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG 234 (378)
+-.....+.+++.|.- . -+..+.+... .|+...++|+..|++|..+
T Consensus 113 --------------~~~~g~~~~~~gT~g~~~~~~~~~~~~~t---TP~~~~l~~~~~~~~d~~~ 160 (475)
T COG0769 113 --------------LKKLGKKTALIGTEGDELSPGILEPTGLT---TPEALDLQNLLRDLLDRGA 160 (475)
T ss_pred --------------HHhcCCceEEEEEEeeeccCCcccccCCC---CccHHHHHHHHHHHHHcCC
Confidence 0112344666666662 2 2443322233 4678899999999999776
No 215
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=61.62 E-value=7.7 Score=36.36 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=17.4
Q ss_pred cEEEEeCC--CChHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSS 114 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~ 114 (378)
.+|+|||. .||||++.++..
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~ 23 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILRE 23 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 47999997 999999988875
No 216
>PLN02327 CTP synthase
Probab=61.51 E-value=19 Score=37.84 Aligned_cols=32 Identities=38% Similarity=0.498 Sum_probs=28.4
Q ss_pred cEEEEeCC----CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT----KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT----nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|.|-|||. =|||.|++-|..+|++.||+|.+.
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~ 37 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSI 37 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeee
Confidence 67888984 799999999999999999999663
No 217
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=61.20 E-value=30 Score=30.62 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCccc
Q 017061 80 MNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIK 132 (378)
Q Consensus 80 ~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~ 132 (378)
++++++..+....++..|.+ +||..+..+++..|-+||++++.+..
T Consensus 43 l~~l~~~~~~~~~~i~~v~~-------gTT~~tNAl~e~~g~~v~li~~~G~~ 88 (176)
T PF05378_consen 43 LDALLEESGIDPSDIDRVRH-------GTTVATNALLERKGARVGLITTGGFG 88 (176)
T ss_pred HHhhhcccCCChhhCcEEEe-------ccHHHHHHHHhccCCCceEEeccCcH
Confidence 34444444433344554544 24688999999999999999886543
No 218
>PTZ00301 uridine kinase; Provisional
Probab=61.15 E-value=10 Score=34.63 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=20.2
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHH
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRA 118 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~ 118 (378)
..+|+|+| ..||||.+..|..-|..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 46899999 48999999988766643
No 219
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=61.08 E-value=9.8 Score=34.34 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=20.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
.+|+|||. .||||.+.++.. .|+.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~v 28 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFLI 28 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 47999997 899999999874 57754
No 220
>PRK03846 adenylylsulfate kinase; Provisional
Probab=61.04 E-value=18 Score=32.36 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=27.8
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+..+|.|+| -.||||.+..|+..|...|..+.++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 446899999 5899999999999998878766543
No 221
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=60.99 E-value=8.4 Score=31.02 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=17.1
Q ss_pred EEEeCC--CChHHHHHHHHHHH
Q 017061 97 VHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 97 I~VTGT--nGKtSTt~~l~~iL 116 (378)
|.|+|. .||||++..|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 567776 79999999999987
No 222
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=59.98 E-value=19 Score=33.25 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=30.5
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
++.|.+|| ..||||.+.-|+.+|++.+.+|...++-
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 36788999 6999999999999999999988665553
No 223
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=59.88 E-value=14 Score=34.61 Aligned_cols=108 Identities=13% Similarity=0.169 Sum_probs=57.7
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHHcCCceEeeeC-C--cccc-cceEE-------ee--CCCCcccCHHH-HHHHHHHH
Q 017061 96 TVHIA--GTKGKGSTAAFLSSILRAEGYSVGCYTS-P--HIKT-IRERM-------NV--GRLNRPVSAKA-LNCLFHKI 159 (378)
Q Consensus 96 ~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~tS-p--~l~~-~~eri-------~i--n~~G~~is~~~-~~~~~~~~ 159 (378)
+|.++ |--||||++.-++..+.+.|++|-+... | .+.+ |+-.+ .+ |-....++... +.+....+
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~~ 81 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQEV 81 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHHH
Confidence 45555 4579999999999999999999987644 2 1111 11100 00 00011122222 22222222
Q ss_pred HHHHHHH---------HhhcCCCcCHHHHHHHHHHHHHH-hcCCCEEEEeeCCC
Q 017061 160 KGVLDEA---------IRLENGCITHFEVLTAMAFALFA-QNHVDIAVIEAGLG 203 (378)
Q Consensus 160 ~~~~~~~---------~~~~~~~~t~fE~~t~~a~~~f~-~~~~d~~VlEvg~g 203 (378)
....... .......|..-|+.....|.-+. ..+.|++|+-+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPt 135 (254)
T cd00550 82 LEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPT 135 (254)
T ss_pred HHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCc
Confidence 2222111 11112347888887777776544 45789999998653
No 224
>PRK05480 uridine/cytidine kinase; Provisional
Probab=58.22 E-value=18 Score=32.46 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=24.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+..+|+|+|- .||||.+..|...|. +..+..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i 38 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVI 38 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEE
Confidence 4568999995 799999999999882 3345443
No 225
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=58.18 E-value=7.9 Score=34.74 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=18.4
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+|+|+|. .||||.+..|+..|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 5899985 89999999999887
No 226
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=57.99 E-value=19 Score=33.62 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCCC-CCCcEEEEeC--CCChHHHHHHHHHH
Q 017061 77 LGRMNRLMDRLGNPH-SKFKTVHIAG--TKGKGSTAAFLSSI 115 (378)
Q Consensus 77 L~r~~~ll~~lg~p~-~~~~~I~VTG--TnGKtSTt~~l~~i 115 (378)
|+++.++...+|..+ -.+|.|+|.| +.||||+...|...
T Consensus 8 ~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 8 VNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred HHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCC
Confidence 566777776777543 4778899999 68999999998875
No 227
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=57.74 E-value=17 Score=30.94 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=24.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+|.|+|- .||||.+..|+..|...|.++..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~ 32 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYV 32 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3667774 79999999999999988877644
No 228
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=57.74 E-value=12 Score=35.01 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 101 GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 101 GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|-.|||+++..++..|...|.+|.++
T Consensus 12 GGvGKSt~a~~la~~l~~~g~~vl~i 37 (241)
T PRK13886 12 GGVGKSFIAATIAQYKASKGQKPLCI 37 (241)
T ss_pred CCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 67999999999999999999999876
No 229
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=57.44 E-value=12 Score=32.49 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=16.8
Q ss_pred EEeCCCChHHHHHHHHHHHHHc
Q 017061 98 HIAGTKGKGSTAAFLSSILRAE 119 (378)
Q Consensus 98 ~VTGTnGKtSTt~~l~~iL~~~ 119 (378)
+|+|+ ||||+..+|++-|...
T Consensus 2 GVsG~-GKStvg~~lA~~lg~~ 22 (161)
T COG3265 2 GVSGS-GKSTVGSALAERLGAK 22 (161)
T ss_pred CCCcc-CHHHHHHHHHHHcCCc
Confidence 46664 9999999999988643
No 230
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=56.79 E-value=6.5 Score=34.60 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHHHHHcCCceEe
Q 017061 103 KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 103 nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
.||||.+.+|..-|...|+++..
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~~~ 29 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKVII 29 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCcccc
Confidence 69999999999999999998544
No 231
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=56.48 E-value=9 Score=33.90 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=17.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+|+|||+ .||||++.+++...
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~ 23 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY 23 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 4899997 89999999887653
No 232
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.35 E-value=46 Score=32.47 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=17.7
Q ss_pred cEEEEeCC--CChHHHH-HHHHHHHHHc
Q 017061 95 KTVHIAGT--KGKGSTA-AFLSSILRAE 119 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt-~~l~~iL~~~ 119 (378)
-.|-|||- .|||||- +||..|=+..
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~ 153 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHK 153 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccC
Confidence 47999994 8898885 5666665544
No 233
>PRK13976 thymidylate kinase; Provisional
Probab=56.34 E-value=12 Score=34.20 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=26.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHc-C-CceEeeeCC
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAE-G-YSVGCYTSP 129 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~-G-~~vg~~tSp 129 (378)
.|.|-|- .||||.+.+|+.-|+.. | ++|.+..-|
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP 39 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREP 39 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCC
Confidence 5777774 79999999999999986 6 577554444
No 234
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=56.30 E-value=22 Score=35.57 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=26.6
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH-HcC-CceEeeeC
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILR-AEG-YSVGCYTS 128 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~-~~G-~~vg~~tS 128 (378)
-.+|.+.|. .|||||...|+.-+. ..| .+|++++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 458888886 579999999998764 446 58887654
No 235
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=56.26 E-value=8.4 Score=36.70 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.4
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCc
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~ 122 (378)
+|+|+|. .||||.+.+|..+|...|..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~ 29 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVT 29 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceE
Confidence 4889996 68999999999999876543
No 236
>PRK04040 adenylate kinase; Provisional
Probab=55.96 E-value=15 Score=32.83 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=24.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|.|+|. .||||.+..+..-|. .|+++..+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~ 35 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNF 35 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEec
Confidence 57999997 899999999998885 25665443
No 237
>PRK13695 putative NTPase; Provisional
Probab=55.83 E-value=19 Score=31.25 Aligned_cols=29 Identities=34% Similarity=0.662 Sum_probs=23.8
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceE
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg 124 (378)
.|+|+|. .||||....+..-|...|++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3788887 6899999999988888888754
No 238
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=55.41 E-value=23 Score=35.16 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=23.3
Q ss_pred CcEEEEeCCC-ChHHHHHHHHHHHHHcCCceE
Q 017061 94 FKTVHIAGTK-GKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 94 ~~~I~VTGTn-GKtSTt~~l~~iL~~~G~~vg 124 (378)
.+++.|-+|+ ||||.|.+|-+-.-+.|+++-
T Consensus 104 Prv~vVGp~d~GKsTl~r~L~nyavk~gr~Pl 135 (415)
T KOG2749|consen 104 PRVMVVGPTDVGKSTLCRILLNYAVKQGRRPL 135 (415)
T ss_pred CEEEEECCCccchHHHHHHHHHHHHHcCCcce
Confidence 3455555676 999999998877666788873
No 239
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=55.39 E-value=17 Score=34.51 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=25.9
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeee
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+|.|.|+| ..||||.+.-|...|.+.+++|....
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 36789999 69999999999999999999987654
No 240
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=55.01 E-value=12 Score=34.26 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
..+|+|+|+ .||||.+.+|+.=|.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 468999998 899999999997765
No 241
>PRK07429 phosphoribulokinase; Provisional
Probab=54.47 E-value=13 Score=36.44 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=23.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcC
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEG 120 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G 120 (378)
+..+|+|+|. .||||++..|+.+|...+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~ 36 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEEL 36 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCc
Confidence 4458999995 789999999999997653
No 242
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=54.40 E-value=15 Score=32.90 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=20.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
+.|+|||. .||||++.+++..+ |+.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~ 29 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPI 29 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeE
Confidence 47999996 89999999988653 5544
No 243
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=54.24 E-value=18 Score=35.91 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
+.-+|+|+|- .||||....|...|+.. ++|+.+..
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~ 40 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKH 40 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEe
Confidence 3458999995 79999999999999999 99998753
No 244
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=53.99 E-value=15 Score=33.37 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=19.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
.+|+|||. .||||.+.++.. .|+.|
T Consensus 6 ~~igitG~igsGKSt~~~~l~~----~g~~v 32 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE----MGCEL 32 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 47999997 899999988875 35554
No 245
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=53.37 E-value=35 Score=37.41 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=26.7
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHH-HcC-CceEeeeC
Q 017061 94 FKTVHIAGTK--GKGSTAAFLSSILR-AEG-YSVGCYTS 128 (378)
Q Consensus 94 ~~~I~VTGTn--GKtSTt~~l~~iL~-~~G-~~vg~~tS 128 (378)
-.+|++.|-| |||||...|+..+. ..| ++|++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~ 223 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT 223 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC
Confidence 3588888874 79999999998884 566 58877543
No 246
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=52.75 E-value=54 Score=29.47 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=28.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
..+|=.||= .||||.+..++..|.+.|++|-+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~ 56 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYL 56 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 358889984 79999999999999999999866
No 247
>PRK05541 adenylylsulfate kinase; Provisional
Probab=52.65 E-value=34 Score=29.65 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
.+..+|.++|- .||||.+..|+.-|...+..+.+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~ 40 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIY 40 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 34568999995 78999999999999877665543
No 248
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=52.46 E-value=26 Score=36.63 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=29.7
Q ss_pred HHHHhCCCCCCCcEEEEeCCC------ChHHHHHHHHHHHHHcCCceEe
Q 017061 83 LMDRLGNPHSKFKTVHIAGTK------GKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 83 ll~~lg~p~~~~~~I~VTGTn------GKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+++++.. .++-+.|.||+.| |||||+-=|++.|...|+++..
T Consensus 44 ~~~~~~~-~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~ 91 (557)
T PF01268_consen 44 VLERLKD-KPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIA 91 (557)
T ss_dssp HHHHTTT-S---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEE
T ss_pred HHhhccc-cCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEE
Confidence 4445532 3466889999974 9999999999999999998854
No 249
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.00 E-value=1.4e+02 Score=31.00 Aligned_cols=46 Identities=24% Similarity=0.284 Sum_probs=28.0
Q ss_pred HHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 81 NRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 81 ~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
..+.+.+..| .-.|-|||. .|||||-.-+-+-|.....++...--|
T Consensus 248 ~~~~~~~~~p---~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDP 295 (500)
T COG2804 248 ARLLRLLNRP---QGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDP 295 (500)
T ss_pred HHHHHHHhCC---CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCC
Confidence 3444444433 348999996 788888765555555566665554334
No 250
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=51.56 E-value=34 Score=33.73 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=22.5
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHH-cCCceEee
Q 017061 93 KFKTVHIAG--TKGKGSTAAFLSSILRA-EGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTG--TnGKtSTt~~l~~iL~~-~G~~vg~~ 126 (378)
++|+..||| -.||||.. .++|+. .|.+++++
T Consensus 3 ~ipv~iltGFLGaGKTTll---~~ll~~~~~~~iavi 36 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLI---RHLLQNAAGRRIAVI 36 (341)
T ss_pred ccCEEEEEECCCCCHHHHH---HHHHhccCCCcEEEE
Confidence 578999999 58999764 444543 68888773
No 251
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=51.40 E-value=1.3e+02 Score=29.56 Aligned_cols=161 Identities=19% Similarity=0.284 Sum_probs=76.7
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHH-cCCceEeeeCCcccccceEEeeCCCC-cccCHHHHHHHHHHHHHHHHHHHhh
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRA-EGYSVGCYTSPHIKTIRERMNVGRLN-RPVSAKALNCLFHKIKGVLDEAIRL 169 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~-~G~~vg~~tSp~l~~~~eri~in~~G-~~is~~~~~~~~~~~~~~~~~~~~~ 169 (378)
+|+..||| -.||||+ |.++|+. .|.|+++.- -.|.| |.++ | ..+... -+++.+.
T Consensus 1 ipVtvitGFLGsGKTTl---L~~lL~~~~g~kiAVIV----NEfGE-vgID--~~~~l~~~------------~e~~~El 58 (323)
T COG0523 1 IPVTVITGFLGSGKTTL---LNHLLANRDGKKIAVIV----NEFGE-VGID--GGALLSDT------------GEEVVEL 58 (323)
T ss_pred CCEEEEeecCCCCHHHH---HHHHHhccCCCcEEEEE----ecCcc-cccc--CCCccccC------------CccEEEe
Confidence 47888999 6899965 6677765 578988731 11222 2333 2 112111 0112222
Q ss_pred cCCC--cC----HHHHHHHHHHHHHHhcCCCEEEEee-CCCCCc-ccccccc--cCCCc---EEEEccCChhhHhhcCCC
Q 017061 170 ENGC--IT----HFEVLTAMAFALFAQNHVDIAVIEA-GLGGAR-DATNIIS--SSGLA---ASVITTIGEEHTAALGGS 236 (378)
Q Consensus 170 ~~~~--~t----~fE~~t~~a~~~f~~~~~d~~VlEv-g~gg~~-D~t~~~~--~~~p~---vaVITNI~~DHld~lG~t 236 (378)
.++| .| ..+... .+.- .+..+|++|+|. |+.... =+..... ...+. -+|||=|..-|..-.-.+
T Consensus 59 ~nGCICCT~r~dl~~~~~--~L~~-~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~ 135 (323)
T COG0523 59 TNGCICCTVRDDLLPALE--RLLR-RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDA 135 (323)
T ss_pred CCceEEEeccchhHHHHH--HHHh-ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHH
Confidence 3443 23 112111 1222 466799999999 665541 0111111 00011 268999998887633222
Q ss_pred HHHHHHHHhccccCCCeEEEcCCCCh--hHHHHHHHHHHhh--CCeEEEe
Q 017061 237 LETIAMAKSGIIKYGRPLVLGGPFLP--HIEHILRDEASLM--CSQVVSA 282 (378)
Q Consensus 237 le~ia~~Ka~Iik~~~~~V~~~~d~~--~~~~vl~~~a~~~--~~~~~~~ 282 (378)
+.+.+. .-+.-...+|+|+.|-- +..+.+++...+. .++++..
T Consensus 136 ~~~~~~---~Qia~AD~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~ 182 (323)
T COG0523 136 IAELAE---DQLAFADVIVLNKTDLVDAEELEALEARLRKLNPRARIIET 182 (323)
T ss_pred HHHHHH---HHHHhCcEEEEecccCCCHHHHHHHHHHHHHhCCCCeEEEc
Confidence 333333 22333456777854432 2222333333333 3566654
No 252
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=51.39 E-value=95 Score=29.28 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=20.3
Q ss_pred cEEEEeCC--CChHHHHHHH-HHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFL-SSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l-~~iL~~~G~~vg~~ 126 (378)
..|.|+|. .|||||...+ ..+. ..+.++..+
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~-~~~~~iiti 114 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN-TPEKNIITV 114 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC-CCCCeEEEE
Confidence 46889986 6899988644 4443 345566554
No 253
>PRK06547 hypothetical protein; Provisional
Probab=51.23 E-value=27 Score=30.68 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=19.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
...+|+|+|. .||||++..|+..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999986 78999999998764
No 254
>PLN02348 phosphoribulokinase
Probab=50.86 E-value=24 Score=35.44 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=23.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHc
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAE 119 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~ 119 (378)
+..+|+|+|- .||||.+..|..+|...
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3468999995 89999999999999764
No 255
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=50.04 E-value=30 Score=29.92 Aligned_cols=52 Identities=25% Similarity=0.216 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
.+.+.+.++-+.|+..-..-.+|...|- .||||.+.-|...| |. .+..+||.
T Consensus 6 ~~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~L---g~-~~~V~SPT 59 (149)
T COG0802 6 PDEEATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGL---GV-DGNVKSPT 59 (149)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHc---CC-CCcccCCC
Confidence 3577788888888877667789999996 89998887766555 43 45678886
No 256
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=49.79 E-value=42 Score=30.13 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=21.1
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
...++|+++|. .||||+..-+..-+. .+.+++++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~ 55 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVI 55 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEE
Confidence 46789999997 556655444433332 34677764
No 257
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=49.69 E-value=25 Score=31.74 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=26.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHHc--CCceEe
Q 017061 95 KTVHIAGTKGKGSTAAFLSSILRAE--GYSVGC 125 (378)
Q Consensus 95 ~~I~VTGTnGKtSTt~~l~~iL~~~--G~~vg~ 125 (378)
..|+|=+-+|||.|++.+...++++ |++|.+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~i 55 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGV 55 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEE
Confidence 5789999999999999999999985 677765
No 258
>PRK10436 hypothetical protein; Provisional
Probab=49.60 E-value=87 Score=32.27 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=21.4
Q ss_pred cEEEEeCC--CChHHHH-HHHHHHHHHcCCceEeeeCC
Q 017061 95 KTVHIAGT--KGKGSTA-AFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt-~~l~~iL~~~G~~vg~~tSp 129 (378)
-.|.|||. .|||||. ++|.++.. .+.++..+-.|
T Consensus 219 GliLvtGpTGSGKTTtL~a~l~~~~~-~~~~i~TiEDP 255 (462)
T PRK10436 219 GLILVTGPTGSGKTVTLYSALQTLNT-AQINICSVEDP 255 (462)
T ss_pred CeEEEECCCCCChHHHHHHHHHhhCC-CCCEEEEecCC
Confidence 47889985 7899987 55555433 35555554333
No 259
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=48.93 E-value=29 Score=30.83 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=24.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHHc--CCceEe
Q 017061 95 KTVHIAGTKGKGSTAAFLSSILRAE--GYSVGC 125 (378)
Q Consensus 95 ~~I~VTGTnGKtSTt~~l~~iL~~~--G~~vg~ 125 (378)
..|+|=+-+|||.|++.+...++++ |++|.+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~i 38 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGV 38 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEE
Confidence 3566666699999999999999875 678754
No 260
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=48.63 E-value=17 Score=31.99 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=21.7
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHH
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRA 118 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~ 118 (378)
.|+|.|.| |.||||.+.-|+.++..
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCC
Confidence 47899998 69999999999998864
No 261
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=48.28 E-value=31 Score=36.18 Aligned_cols=46 Identities=30% Similarity=0.292 Sum_probs=34.0
Q ss_pred CCChHHHHHHHHHhCCCCCCCcEEEEeCC------CChHHHHHHHHHHHHHcCCceE
Q 017061 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGT------KGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 74 ~~~L~r~~~ll~~lg~p~~~~~~I~VTGT------nGKtSTt~~l~~iL~~~G~~vg 124 (378)
+.+|+- ++++.. .+..++|.||.+ -|||||+.-|++.|.+.|.++.
T Consensus 39 Ki~~~~----~~~~~~-~~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~i 90 (578)
T PRK13506 39 KVSLSV----LKRLAD-KPKGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKVC 90 (578)
T ss_pred ecCHHH----HHhhcc-CCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCceE
Confidence 455654 444432 134589999993 5999999999999999999863
No 262
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=47.86 E-value=26 Score=32.44 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=24.8
Q ss_pred EEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|.++| ..||||.+..|+.-|...|+++..+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i 33 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIIL 33 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 56676 4799999999999999888887654
No 263
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=47.60 E-value=65 Score=32.46 Aligned_cols=49 Identities=24% Similarity=0.326 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHH-HHHHHcCCceEeee
Q 017061 75 FDLGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLS-SILRAEGYSVGCYT 127 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~-~iL~~~G~~vg~~t 127 (378)
.++..+.+++. |.. .-..|.|+| ..|||+.+.-++ ++....|++|.+|+
T Consensus 179 tG~~~LD~~~~--G~~--~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS 230 (421)
T TIGR03600 179 TGLPKLDRLTN--GLV--KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS 230 (421)
T ss_pred CCChhHHHHhc--CCC--CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34555666554 543 334677777 579999998777 44446799997764
No 264
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=47.57 E-value=42 Score=35.47 Aligned_cols=47 Identities=28% Similarity=0.226 Sum_probs=34.4
Q ss_pred CCChHHHHHHHHHhCCCCCCCcEEEEeCCC------ChHHHHHHHHHHHH-HcCCceEe
Q 017061 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGTK------GKGSTAAFLSSILR-AEGYSVGC 125 (378)
Q Consensus 74 ~~~L~r~~~ll~~lg~p~~~~~~I~VTGTn------GKtSTt~~l~~iL~-~~G~~vg~ 125 (378)
+.+|+-+ +++.+ .++-+.|.||+.| |||||+-=|.+.|. ..|+++..
T Consensus 53 Kv~l~~~----~~~~~-~~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~~ 106 (625)
T PTZ00386 53 KVKLSVL----KRLEN-SPNGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTFA 106 (625)
T ss_pred ecCHHHH----Hhhcc-CCCCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceEE
Confidence 4666643 34432 1345789999874 99999999999999 68988754
No 265
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=47.26 E-value=20 Score=36.01 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=20.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
..|+|||. .||||++.+|+. .|+.|
T Consensus 2 ~~IgltG~igsGKStv~~~L~~----~G~~v 28 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE----LGAVV 28 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 46999996 999999998875 36654
No 266
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=47.17 E-value=22 Score=30.89 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=19.9
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+.++|.|.|. .||||.+..|+.-+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999997 78999999998654
No 267
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=46.94 E-value=32 Score=36.08 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=29.6
Q ss_pred CCcEEEEeCC------CChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAGT------KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTGT------nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.++|.||.+ -|||||+.=|+..|.+.|.+|.+.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli 93 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA 93 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 5689999983 499999999999999999998754
No 268
>PRK06217 hypothetical protein; Validated
Probab=46.88 E-value=19 Score=31.66 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.0
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.|.|+|. .||||.+..|+..|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 4788885 79999999999877
No 269
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=46.56 E-value=25 Score=33.49 Aligned_cols=174 Identities=20% Similarity=0.256 Sum_probs=82.6
Q ss_pred EEEe--CCCChHHHHHHHHHHHHHcCCceEee-eCCcccccceEEeeCCCCcccCHHHHHHHHHHHHH----HHHHHHhh
Q 017061 97 VHIA--GTKGKGSTAAFLSSILRAEGYSVGCY-TSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKG----VLDEAIRL 169 (378)
Q Consensus 97 I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~-tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~----~~~~~~~~ 169 (378)
|+|= |--|||||++=|+..|...|+||-.. ..|.-- .-|...+ |..++. .+ ..+.+-.. .++.+...
T Consensus 3 IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~D--ST~~ll~--g~~~~T-vl-d~~~~~~~~e~~~ledvv~~ 76 (273)
T PF00142_consen 3 IAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKAD--STRLLLG--GKAIPT-VL-DLLREKGSVEDLELEDVVKE 76 (273)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSST--SSCHHHT--TSS-SB-HH-HHHHHHCTGGGS-HHHHSEE
T ss_pred EEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCc--cceeccC--Cccchh-HH-HHHhhccccccCCCCcEEEe
Confidence 5554 56899999999999999999999765 344311 1122334 444321 11 11111110 01111111
Q ss_pred c--------CCCcC------HHHHHHHHHHHH---HHhcCCCEEEEee-C---CCCCcccccccccCCCcEEEEccCChh
Q 017061 170 E--------NGCIT------HFEVLTAMAFAL---FAQNHVDIAVIEA-G---LGGARDATNIISSSGLAASVITTIGEE 228 (378)
Q Consensus 170 ~--------~~~~t------~fE~~t~~a~~~---f~~~~~d~~VlEv-g---~gg~~D~t~~~~~~~p~vaVITNI~~D 228 (378)
+ .+.|. -=-+.+++-++- ..+.++|+++.-| | -||. +..+-+..--++-++|+=+.
T Consensus 77 G~~gi~CvEsGGPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGF--amPir~g~a~evyIVtSge~- 153 (273)
T PF00142_consen 77 GFKGILCVESGGPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGF--AMPIREGYAQEVYIVTSGEF- 153 (273)
T ss_dssp EGGGEEEEE---SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTT--THHHHTTS-SEEEEEEBSSH-
T ss_pred ccCCceeeccCCCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeee--ehhhhhccCCEEEEEecCcH-
Confidence 1 11111 112222222221 1235689999988 1 1222 11111111135888998543
Q ss_pred hHhhcCCCHHHHHHHHhccccCCC----eEEEcCCCChhHHHHHHHHHHhhCCeEEEe
Q 017061 229 HTAALGGSLETIAMAKSGIIKYGR----PLVLGGPFLPHIEHILRDEASLMCSQVVSA 282 (378)
Q Consensus 229 Hld~lG~tle~ia~~Ka~Iik~~~----~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~ 282 (378)
+..+ ---+|++.-...-+.+. -+|+|..+.+.-.+++.+.|.+.+.+++.+
T Consensus 154 -msly--AANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~~~v~~fa~~~g~~i~~~ 208 (273)
T PF00142_consen 154 -MSLY--AANNICKAIKNFADRGGARLGGIICNSRNVDDEEEIVEDFAERIGTPIIAF 208 (273)
T ss_dssp -HHHH--HHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHHHHHHHHHHHHTSEEEEE
T ss_pred -HHHH--HHHHHHHHHHHHhccCCCceEEEEecCCCCCCchHHHHHHHHHcCCcEEEe
Confidence 3333 23334433222222222 277884444556678899999999998875
No 270
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=45.68 E-value=38 Score=30.33 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=23.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+++.|+|- .|||++...+...+.+.|++|...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ 52 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGL 52 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 45556554 579999999999999999888653
No 271
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=45.44 E-value=32 Score=36.04 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=35.0
Q ss_pred CCChHHHHHHHHHhCCCCCCCcEEEEeCCC------ChHHHHHHHHHHHHHcCCceEe
Q 017061 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGTK------GKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 74 ~~~L~r~~~ll~~lg~p~~~~~~I~VTGTn------GKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+.+|+ .+++++.+ .++-+.|.||+.| |||||+-=|...|.+.|+++..
T Consensus 47 Ki~l~---~~l~~~~~-~~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~ 100 (587)
T PRK13507 47 KVDFR---KVLDRLKD-RPDGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSG 100 (587)
T ss_pred eecHH---HHHHhhcc-CCCCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEE
Confidence 45555 23344433 2345789999874 9999999999999999998854
No 272
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=45.39 E-value=51 Score=29.06 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=16.5
Q ss_pred CChHHHHHHHHHHHHHcCC
Q 017061 103 KGKGSTAAFLSSILRAEGY 121 (378)
Q Consensus 103 nGKtSTt~~l~~iL~~~G~ 121 (378)
.||||++..|++++-+.|.
T Consensus 10 CGKTTva~aL~~LFg~wgH 28 (168)
T PF08303_consen 10 CGKTTVALALSNLFGEWGH 28 (168)
T ss_pred cCHHHHHHHHHHHcCCCCc
Confidence 7999999999999976653
No 273
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=45.07 E-value=31 Score=30.24 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=21.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|++.|||- .||||+-.-+-. ....|.++++.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI 33 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVI 33 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEE
Confidence 67889994 899988655544 45678999884
No 274
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=44.92 E-value=21 Score=32.55 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=20.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
.+|+|||. .||||++.+++.- .|+.+
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~---lg~~v 34 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEK---LNLNV 34 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---cCCeE
Confidence 47999995 9999999988753 36654
No 275
>PRK06851 hypothetical protein; Provisional
Probab=44.90 E-value=37 Score=33.87 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=28.2
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
-+++.|+| ..||||+..-|...+.+.|+.|..+
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~ 64 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFL 64 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 36799999 4899999999999999889987654
No 276
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=44.87 E-value=43 Score=29.88 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=26.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHHc--CCceEee
Q 017061 95 KTVHIAGTKGKGSTAAFLSSILRAE--GYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGTnGKtSTt~~l~~iL~~~--G~~vg~~ 126 (378)
-.|+|==-+|||.|++.+...|+++ |+||.++
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~ii 55 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIV 55 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEE
Confidence 4688866699999999999999996 5788763
No 277
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=44.42 E-value=49 Score=31.11 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=31.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
+...+.+.|.- |||-.+..|+.-|...|.+|.+++.|.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~e 143 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPD 143 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 55678888875 699999999998888899998877664
No 278
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=44.33 E-value=22 Score=31.77 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=20.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
.+|+|||. .||||++.+++. .|+.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~----~g~~~ 29 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE----LGAPV 29 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----cCCEE
Confidence 47999995 899999998886 36654
No 279
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=44.00 E-value=39 Score=29.49 Aligned_cols=30 Identities=43% Similarity=0.625 Sum_probs=24.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHc--CCceEe
Q 017061 96 TVHIAGTKGKGSTAAFLSSILRAE--GYSVGC 125 (378)
Q Consensus 96 ~I~VTGTnGKtSTt~~l~~iL~~~--G~~vg~ 125 (378)
.|+|=+.+|||.|++.+...++++ |++|.+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 577866669999999999999875 678766
No 280
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=43.88 E-value=38 Score=29.63 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHH
Q 017061 79 RMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLS 113 (378)
Q Consensus 79 r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~ 113 (378)
-+.+++..+|.|++..+++ |.| -.||||....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~i~-ivG~~~~GKTsli~~l~ 38 (184)
T smart00178 3 WFYDILASLGLWNKHAKIL-FLGLDNAGKTTLLHMLK 38 (184)
T ss_pred HHHHHHHHhccccccCEEE-EECCCCCCHHHHHHHHh
Confidence 4566777888777776544 444 389999866553
No 281
>PRK01184 hypothetical protein; Provisional
Probab=43.83 E-value=28 Score=30.40 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=19.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
++|+|+|- .||||.+. ++++.|+.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~----~~~~~g~~~ 28 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK----IAREMGIPV 28 (184)
T ss_pred cEEEEECCCCCCHHHHHH----HHHHcCCcE
Confidence 58999996 88999765 567788765
No 282
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=43.69 E-value=37 Score=37.60 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=31.1
Q ss_pred CCCcEEEEeCCC---ChHHHHHHHHHHHHHcCCceEee
Q 017061 92 SKFKTVHIAGTK---GKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VTGTn---GKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
-+++.+-||||| |||-++..|.+.+++.|++|+.+
T Consensus 25 ~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~y~ 62 (817)
T PLN02974 25 LSCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVLYV 62 (817)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 467899999995 99999999999999999988654
No 283
>PLN02759 Formate--tetrahydrofolate ligase
Probab=43.62 E-value=43 Score=35.45 Aligned_cols=47 Identities=30% Similarity=0.190 Sum_probs=34.2
Q ss_pred CCChHHHHHHHHHhCCCCCCCcEEEEeCCC------ChHHHHHHHHHHHHH-cCCceEe
Q 017061 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGTK------GKGSTAAFLSSILRA-EGYSVGC 125 (378)
Q Consensus 74 ~~~L~r~~~ll~~lg~p~~~~~~I~VTGTn------GKtSTt~~l~~iL~~-~G~~vg~ 125 (378)
+.+|+. ++++.+ .++-+.|.||+.| |||||+-=|.+.|.+ .|+++..
T Consensus 54 Ki~l~~----l~~~~~-~~~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~ 107 (637)
T PLN02759 54 KVLLSV----RDRLAG-APDGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVT 107 (637)
T ss_pred EEcHHH----Hhhhcc-CCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEE
Confidence 455654 344432 2345789999864 999999999999997 8988754
No 284
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=43.20 E-value=1.6e+02 Score=26.87 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=26.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
...|.|.|+ .|||+...-+-..|+.. |++++.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~ 47 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVIT 47 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEe
Confidence 568999998 78998887777777766 8988754
No 285
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=43.12 E-value=1e+02 Score=29.32 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=30.6
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 96 TVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 96 ~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
+|.+.| +.|||.+..-|..-|.-.|++|..|..|
T Consensus 58 lIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~P 93 (264)
T TIGR03709 58 LLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAP 93 (264)
T ss_pred EEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCC
Confidence 577888 7999999999999999999999998776
No 286
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=42.60 E-value=18 Score=33.99 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=18.0
Q ss_pred CCCCcEEEEeCCCChHHHH-HHHHHHHHHcC
Q 017061 91 HSKFKTVHIAGTKGKGSTA-AFLSSILRAEG 120 (378)
Q Consensus 91 ~~~~~~I~VTGTnGKtSTt-~~l~~iL~~~G 120 (378)
...+.+.+.+|| |||||. .-+..+|...+
T Consensus 13 ~~~~lV~a~AGS-GKT~~l~~ri~~ll~~~~ 42 (315)
T PF00580_consen 13 EGPLLVNAGAGS-GKTTTLLERIAYLLYEGG 42 (315)
T ss_dssp SSEEEEEE-TTS-SHHHHHHHHHHHHHHTSS
T ss_pred CCCEEEEeCCCC-CchHHHHHHHHHhhcccc
Confidence 344556777775 999976 44556666554
No 287
>PRK08181 transposase; Validated
Probab=42.49 E-value=24 Score=33.53 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=23.7
Q ss_pred EEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 97 I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+.+.|. .|||-.+..|+.-+...|++|..++
T Consensus 109 lll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 555553 5999999999988888899986543
No 288
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=42.41 E-value=1.5e+02 Score=24.91 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=30.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (378)
Q Consensus 96 ~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (378)
+++..|.-+-.-=..+++.+|+.+||+|.- +|..++++.+.+.
T Consensus 3 vigtv~gD~HdiGkniv~~~L~~~GfeVid-----------------LG~~v~~e~~v~a 45 (128)
T cd02072 3 VLGVIGSDCHAVGNKILDHAFTEAGFNVVN-----------------LGVLSPQEEFIDA 45 (128)
T ss_pred EEEEeCCchhHHHHHHHHHHHHHCCCEEEE-----------------CCCCCCHHHHHHH
Confidence 355566655555568899999999999842 3888888766543
No 289
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=42.36 E-value=26 Score=33.36 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=30.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNC 154 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~ 154 (378)
-.++.+-|+ .|||||-.||..+++..- | .|.+| |.++++.+...
T Consensus 27 gef~vliGpSGsGKTTtLkMINrLiept~---G------------~I~i~--g~~i~~~d~~~ 72 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINRLIEPTS---G------------EILID--GEDISDLDPVE 72 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCCC---c------------eEEEC--CeecccCCHHH
Confidence 346667776 689999999999887521 1 24778 88887654443
No 290
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=41.98 E-value=42 Score=31.16 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
|..++..|...+. .-+|.+.| +.|||.+..-|..-|--.|++|..|..|
T Consensus 18 L~~lQ~~l~~~~~----~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~p 68 (230)
T TIGR03707 18 LVKLQAWVKETGA----RVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKP 68 (230)
T ss_pred HHHHHHHHHHcCC----CEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCC
Confidence 4455555555442 23678888 7999999999999999999999877655
No 291
>PRK14709 hypothetical protein; Provisional
Probab=41.90 E-value=49 Score=34.14 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhCC---CCCC-CcEEEEe--CCCChHHHHHHHHHHHHHc
Q 017061 77 LGRMNRLMDRLGN---PHSK-FKTVHIA--GTKGKGSTAAFLSSILRAE 119 (378)
Q Consensus 77 L~r~~~ll~~lg~---p~~~-~~~I~VT--GTnGKtSTt~~l~~iL~~~ 119 (378)
-+.+..+.+.+|. +... -..+.+. |-||||+...+|..+|-..
T Consensus 184 ~e~~~~lq~~lGy~L~g~~~~q~~~~l~G~G~NGKSt~~~~i~~llG~~ 232 (469)
T PRK14709 184 DELIRFLQQWCGYCLTGDTREHALVFVFGGGGNGKSVFLNVLAGILGDY 232 (469)
T ss_pred HHHHHHHHHHhhHhhcCCCccceEEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 3445555555543 1122 1334444 5699999999999999753
No 292
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=41.86 E-value=22 Score=35.88 Aligned_cols=46 Identities=24% Similarity=0.418 Sum_probs=30.6
Q ss_pred CCcEEEEeCCCC--hHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061 93 KFKTVHIAGTKG--KGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (378)
Q Consensus 93 ~~~~I~VTGTnG--KtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (378)
+-.+|-++|.|| |||.+.++..+.+-. .-+|..| |.|++++.+.++
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~Pq---------------sG~I~ld--g~pV~~e~ledY 395 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQ---------------SGEILLD--GKPVSAEQLEDY 395 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCC---------------CCceeEC--CccCCCCCHHHH
Confidence 445789999875 777776665443321 1246889 999988766554
No 293
>PRK06756 flavodoxin; Provisional
Probab=41.84 E-value=2.1e+02 Score=23.95 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeCCCCh-----HHHHHHHHHHHHHcCCceE
Q 017061 79 RMNRLMDRLGNPHSKFKTVHIAGTKGK-----GSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 79 r~~~ll~~lg~p~~~~~~I~VTGTnGK-----tSTt~~l~~iL~~~G~~vg 124 (378)
.+..+++.+.....+-+.+++=||-|+ +.....+...|.+.|.++.
T Consensus 68 ~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v 118 (148)
T PRK06756 68 DFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVV 118 (148)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEc
Confidence 477788777544444566777777554 3667888899999998763
No 294
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=41.82 E-value=50 Score=31.42 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=28.8
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
...|++.|- .||||+...|+..+...|.++++.+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~ 111 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 111 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEec
Confidence 368888874 78999999999999888889987643
No 295
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=41.74 E-value=28 Score=31.23 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=21.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRA 118 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~ 118 (378)
...+|+|+|- .||||.+..|...|..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3368999995 7999999999998864
No 296
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.38 E-value=79 Score=32.17 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=25.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH--HcCCceEeeeC
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLSSILR--AEGYSVGCYTS 128 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~~iL~--~~G~~vg~~tS 128 (378)
+-.+|++.|-| |||||.+.|+..+. ..+.++++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~ 229 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTT 229 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 34688999975 79999999987543 33457776544
No 297
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=41.08 E-value=79 Score=30.49 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=23.5
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+..+|.|+|+ .||||....+...|... .+++++
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEE
Confidence 45689999998 56777776666666543 466664
No 298
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=41.04 E-value=47 Score=32.61 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=32.7
Q ss_pred CCCChHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 73 DGFDLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 73 ~~~~L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
..++-+-.+.++..+.. .. -|.+.|. .||||.+..++..|...-+++
T Consensus 47 y~f~~~~~~~vl~~l~~-~~---~ilL~G~pGtGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 47 YLFDKATTKAICAGFAY-DR---RVMVQGYHGTGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred ccCCHHHHHHHHHHHhc-CC---cEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence 44666777778888743 22 3666665 689999999999986544444
No 299
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=40.87 E-value=22 Score=32.53 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=21.3
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHHc
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRAE 119 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~ 119 (378)
.-+|+|+| ..||||.+..+..+|..+
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~ 31 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGC 31 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCC
Confidence 34899999 379999999999988653
No 300
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=40.69 E-value=71 Score=33.45 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
++.++.+|+..-.+....+++.+||- .|||||...|+.-| |+.+--+..|-
T Consensus 28 v~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~np~ 80 (519)
T PF03215_consen 28 VEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWINPV 80 (519)
T ss_pred HHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh---CCeeEEecCCC
Confidence 67888888875444444568999995 78999988887554 77776665553
No 301
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=40.67 E-value=22 Score=32.00 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=17.8
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
+|+|||. .||||++.++.. .|..+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~----~g~~~ 26 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE----LGAFG 26 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH----CCCEE
Confidence 4899997 689998887763 36544
No 302
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=40.53 E-value=41 Score=29.79 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=21.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHcC--CceEee
Q 017061 96 TVHIAGTKGKGSTAAFLSSILRAEG--YSVGCY 126 (378)
Q Consensus 96 ~I~VTGTnGKtSTt~~l~~iL~~~G--~~vg~~ 126 (378)
.|+|=--+|||.||+.+...|+++| +||.++
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~iv 37 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIV 37 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEE
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 3666556899999999999999965 677653
No 303
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=40.06 E-value=17 Score=30.30 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=22.4
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcc
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHI 131 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l 131 (378)
+.-.+|...|- .||||.+..+...| |.+- ..+||..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l---g~~~-~V~SPTF 50 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL---GIDE-EVTSPTF 50 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT---T--S-----TTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc---CCCC-CcCCCCe
Confidence 45578999996 89999988777766 4432 4678863
No 304
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=39.96 E-value=54 Score=31.49 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=17.2
Q ss_pred eCCCChHHHHHHHHHHHHHc
Q 017061 100 AGTKGKGSTAAFLSSILRAE 119 (378)
Q Consensus 100 TGTnGKtSTt~~l~~iL~~~ 119 (378)
.|.|||||...+|..++-..
T Consensus 84 ~g~nGKStl~~~l~~l~G~~ 103 (304)
T TIGR01613 84 NGGNGKSTFQNLLSNLLGDY 103 (304)
T ss_pred CCCCcHHHHHHHHHHHhChh
Confidence 46799999999999999654
No 305
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=39.93 E-value=1.7e+02 Score=24.79 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=31.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (378)
Q Consensus 96 ~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (378)
+++..|.-+-.-=..+++.+|+.+||+|.- +|..++++.+.+.
T Consensus 5 vigtv~~D~HdiGk~iv~~~l~~~GfeVi~-----------------LG~~v~~e~~v~a 47 (134)
T TIGR01501 5 VLGVIGSDCHAVGNKILDHAFTNAGFNVVN-----------------LGVLSPQEEFIKA 47 (134)
T ss_pred EEEEecCChhhHhHHHHHHHHHHCCCEEEE-----------------CCCCCCHHHHHHH
Confidence 356667666666668899999999999842 3778887766543
No 306
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=39.49 E-value=39 Score=36.39 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCCC-CcEEEEeCC--CChHHHHHHHHHHH
Q 017061 78 GRMNRLMDRLGNPHSK-FKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~-~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
....+.|+.||.|+.+ .++|.|.|. .||||++..|+..|
T Consensus 425 P~F~~~l~~Lg~~~~~~~~~i~i~g~~~~gks~~~~~l~~~~ 466 (661)
T PRK11860 425 PDYFEALFSVAQADADRVPVICIDGPTASGKGTVAARVAEAL 466 (661)
T ss_pred CChHHHHHHhcCCcccCcceEEeeCCCCCCHHHHHHHHHHHh
Confidence 3456677777877544 678999995 89999999999887
No 307
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=39.47 E-value=28 Score=28.76 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=17.1
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+|.|+|. .||||.+..|+.-|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 4789987 67999998888665
No 308
>PRK08118 topology modulation protein; Reviewed
Probab=39.41 E-value=34 Score=29.84 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=17.9
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
+-|.|.|. .||||.+..|+..|.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35778775 789999999887763
No 309
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=39.39 E-value=1.8e+02 Score=23.36 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=19.7
Q ss_pred EEeCCCChHHHHHHHHHHHHHcCCceE
Q 017061 98 HIAGTKGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 98 ~VTGTnGKtSTt~~l~~iL~~~G~~vg 124 (378)
+-.+...-+-=..|++.+|+..|++|.
T Consensus 5 ~~~~~e~H~lG~~~~~~~l~~~G~~V~ 31 (119)
T cd02067 5 ATVGGDGHDIGKNIVARALRDAGFEVI 31 (119)
T ss_pred EeeCCchhhHHHHHHHHHHHHCCCEEE
Confidence 333445555556899999999999984
No 310
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=39.30 E-value=51 Score=27.26 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=23.3
Q ss_pred EEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.|+|- .|||+.+..+...+...|.++..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 33 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 456665 689999999988888878777654
No 311
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=39.13 E-value=2.5e+02 Score=27.92 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCCChHHHHHHHHHHHHHcCCceEeee
Q 017061 101 GTKGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 101 GTnGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
.-.||||++--|.+.|++.|.++++|.
T Consensus 12 ~~~G~tsi~lgLl~~l~~k~~kva~~k 38 (354)
T COG0857 12 TGVGKTSISLGLLRALEQKGLKVAYFK 38 (354)
T ss_pred CCccHHHHHHHHHHHHHHcCceeEEEe
Confidence 348999999989999999999999874
No 312
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=38.93 E-value=49 Score=36.99 Aligned_cols=29 Identities=38% Similarity=0.423 Sum_probs=25.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHcCCceEe
Q 017061 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 96 ~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+.|.-|| |||||...|-.+|-+.|++|-+
T Consensus 690 I~GMPGT-GKTTtI~~LIkiL~~~gkkVLL 718 (1100)
T KOG1805|consen 690 ILGMPGT-GKTTTISLLIKILVALGKKVLL 718 (1100)
T ss_pred eecCCCC-CchhhHHHHHHHHHHcCCeEEE
Confidence 5566676 9999999999999999999955
No 313
>PRK13975 thymidylate kinase; Provisional
Probab=38.91 E-value=32 Score=30.26 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRA 118 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~ 118 (378)
.+|.|.|. .||||.+..|+..|..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999997 8999999999999864
No 314
>PRK08356 hypothetical protein; Provisional
Probab=38.64 E-value=43 Score=29.78 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=23.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
.+|+|+|. .||||.+..|. +.|+.+..++++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~----~~g~~~is~~~~ 38 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE----EKGFCRVSCSDP 38 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH----HCCCcEEeCCCc
Confidence 47899996 89999999994 358876555543
No 315
>PRK13764 ATPase; Provisional
Probab=38.62 E-value=58 Score=34.75 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=27.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
..|.|+|. .||||+.+.+...+...|+.+..+-.|
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp 294 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESP 294 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 45888884 899999988888887888777565555
No 316
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.45 E-value=1.8e+02 Score=24.37 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=22.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHcCCceE
Q 017061 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 96 ~I~VTGTnGKtSTt~~l~~iL~~~G~~vg 124 (378)
+++..|--+-.-=+.+++.+|+.+||.|.
T Consensus 6 ~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi 34 (132)
T TIGR00640 6 LVAKMGQDGHDRGAKVIATAYADLGFDVD 34 (132)
T ss_pred EEEeeCCCccHHHHHHHHHHHHhCCcEEE
Confidence 35555667777777999999999999984
No 317
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=37.93 E-value=1.2e+02 Score=24.02 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=23.8
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
.+.+.|+|- .|||+++..+..-+...+.++..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~ 52 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLY 52 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEE
Confidence 356888885 78999998888888665665543
No 318
>PRK04296 thymidine kinase; Provisional
Probab=37.87 E-value=56 Score=29.04 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=21.5
Q ss_pred cEEEEeCCCChHHHHHHHHHH--HHHcCCceEeee
Q 017061 95 KTVHIAGTKGKGSTAAFLSSI--LRAEGYSVGCYT 127 (378)
Q Consensus 95 ~~I~VTGTnGKtSTt~~l~~i--L~~~G~~vg~~t 127 (378)
.++-|||--|+|-|+.++..+ +..+|.+|.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 367889985555555555444 445788887763
No 319
>PRK06762 hypothetical protein; Provisional
Probab=37.84 E-value=35 Score=29.19 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
++|.|+|. .||||.+..|+.-|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899995 89999999998777
No 320
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=37.25 E-value=28 Score=32.62 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=25.8
Q ss_pred EEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.|+|= |-=||+||++=+++.|.+.|++|-..
T Consensus 3 ~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~v 35 (278)
T COG1348 3 QIAIYGKGGIGKSTTSQNLAAALAELGKKVLIV 35 (278)
T ss_pred eEEEecCCCcCcchhHHHHHHHHHHcCCeEEEE
Confidence 45665 45799999999999999999999654
No 321
>PRK13974 thymidylate kinase; Provisional
Probab=36.97 E-value=36 Score=30.80 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCC
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGY 121 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~ 121 (378)
.+|++-|. .||||.+.+|...|...|.
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~ 32 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGL 32 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 47888885 7999999999999998875
No 322
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=36.85 E-value=78 Score=30.20 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=30.5
Q ss_pred HHHHHHhCCCC-CCCcEEEEeCC--CChHHHHHHHHHHHHHc
Q 017061 81 NRLMDRLGNPH-SKFKTVHIAGT--KGKGSTAAFLSSILRAE 119 (378)
Q Consensus 81 ~~ll~~lg~p~-~~~~~I~VTGT--nGKtSTt~~l~~iL~~~ 119 (378)
..+.+.+-+++ ...-+|+|.|- .||||...++..-|+..
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34455555554 44568999996 99999999999999987
No 323
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=36.83 E-value=27 Score=30.99 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=19.3
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHH
Q 017061 95 KTVHIAG--TKGKGSTAAFLSSILRA 118 (378)
Q Consensus 95 ~~I~VTG--TnGKtSTt~~l~~iL~~ 118 (378)
++|-+.| +.||||.+..|...|..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~ 27 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPE 27 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcC
Confidence 4778887 59999999999998753
No 324
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=36.48 E-value=60 Score=33.44 Aligned_cols=46 Identities=30% Similarity=0.461 Sum_probs=36.5
Q ss_pred HHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 82 RLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 82 ~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
++.++|- .+..-|.|+|. .||||.++.++.-+.+.|+-|-.+-||-
T Consensus 254 kl~eRL~---eraeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsPR 301 (604)
T COG1855 254 KLKERLE---ERAEGILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESPR 301 (604)
T ss_pred HHHHHHH---hhhcceEEecCCCCChhHHHHHHHHHHHhcCcEEeeccCcc
Confidence 4445543 24456999997 7899999999999999999887788884
No 325
>PLN02674 adenylate kinase
Probab=36.47 E-value=79 Score=29.62 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+.+..+++++-.+....+.|.|.|- .||||.+.+|+.-+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 14 VDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred HHHHHHHHHHHhhccccCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45556666666443444456777775 89999999988744
No 326
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=35.93 E-value=44 Score=28.98 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|+|+ |-.||||++.-|+..| ++|.+.
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l----~~vlli 30 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLA 30 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH----hCcEEE
Confidence 4555 5589999999999999 677664
No 327
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=35.92 E-value=19 Score=33.39 Aligned_cols=49 Identities=29% Similarity=0.519 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
|..+++.+...+.| -+|.+.| +.|||.+...|..-|--.|++|..|..|
T Consensus 18 L~~lQ~~l~~~~~~----vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~p 68 (228)
T PF03976_consen 18 LAELQRRLREAGIP----VLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKP 68 (228)
T ss_dssp HHHHHHHHHHHHHE----EEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS-
T ss_pred HHHHHHHHHHcCCc----EEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCC
Confidence 44455555555532 4678888 8999999999999999999999887665
No 328
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=35.84 E-value=49 Score=29.55 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=19.9
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHH--HHcCC
Q 017061 95 KTVHIAGTK--GKGSTAAFLSSIL--RAEGY 121 (378)
Q Consensus 95 ~~I~VTGTn--GKtSTt~~l~~iL--~~~G~ 121 (378)
.+++|||.| ||||...+|+... ...|.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~ 60 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGC 60 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCC
Confidence 589999986 6888888888433 34553
No 329
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=35.81 E-value=42 Score=30.74 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=19.3
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
.+|++||. .||||++. .|++.|+.|
T Consensus 2 ~iVGLTGgiatGKStVs~----~f~~~G~~v 28 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQ----VFKALGIPV 28 (225)
T ss_pred eEEEeecccccChHHHHH----HHHHcCCcE
Confidence 47999996 89999765 556777765
No 330
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=35.72 E-value=36 Score=30.88 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=24.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHHcCCce
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~v 123 (378)
.--.+.|+|-| ||||.-++|+.+++...=.|
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v 59 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPDAGEV 59 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE
Confidence 34579999987 59999999999998754344
No 331
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=35.72 E-value=72 Score=30.04 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=22.7
Q ss_pred EEEeCC--CChHHHHHHHHHHHHHcCCceE
Q 017061 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 97 I~VTGT--nGKtSTt~~l~~iL~~~G~~vg 124 (378)
+-+.|. .||||+...+-.-+...|+++.
T Consensus 55 vLL~G~rGtGKSSlVkall~~y~~~GLRlI 84 (249)
T PF05673_consen 55 VLLWGARGTGKSSLVKALLNEYADQGLRLI 84 (249)
T ss_pred eEEecCCCCCHHHHHHHHHHHHhhcCceEE
Confidence 555665 6899999999999989998863
No 332
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=35.29 E-value=62 Score=29.23 Aligned_cols=32 Identities=38% Similarity=0.446 Sum_probs=25.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHHc--CCceEee
Q 017061 95 KTVHIAGTKGKGSTAAFLSSILRAE--GYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGTnGKtSTt~~l~~iL~~~--G~~vg~~ 126 (378)
-.|.|==.||||-||+.+.-+|++. |++|+++
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vv 62 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGHGLRVGVV 62 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEE
Confidence 3455555589999999999999984 6888774
No 333
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=35.04 E-value=68 Score=32.75 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=27.6
Q ss_pred cEEEEeCC----CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT----KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT----nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|-|.|||- -|||-|++-+..+|+..|++|..+
T Consensus 2 KYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTsI 37 (585)
T KOG2387|consen 2 KYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSI 37 (585)
T ss_pred eEEEEeCcEeecccCceeehhHHHHHHhcCceeEEE
Confidence 56778875 799999999999999999998653
No 334
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.90 E-value=2.5e+02 Score=28.65 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHhCC--C-CCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEee
Q 017061 74 GFDLGRMNRLMDRLGN--P-HSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 74 ~~~L~r~~~ll~~lg~--p-~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+|++|+-.+|+..|. | ....++..|+-..+...-+.-++..|+++|++|-++
T Consensus 313 aiGveRl~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~ 368 (429)
T COG0124 313 AIGVERLILALEEEGKEDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVD 368 (429)
T ss_pred ehHHHHHHHHHHHcCCCCCcCCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEE
Confidence 3789999999999983 3 334566666655555688899999999999988664
No 335
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=34.83 E-value=1.3e+02 Score=30.44 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHH-HHHHHcCCceEee
Q 017061 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLS-SILRAEGYSVGCY 126 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~-~iL~~~G~~vg~~ 126 (378)
.+++.+..++. |.+. -..+.|+|. .|||+.+.-++ ++....|.+|..|
T Consensus 180 tG~~~LD~~~~--G~~~--G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~ 230 (434)
T TIGR00665 180 TGFTDLDKLTS--GLQP--SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFF 230 (434)
T ss_pred CCchhhHhhcC--CCCC--CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 34555555553 5533 346777774 68999887554 4555678888765
No 336
>PRK12338 hypothetical protein; Provisional
Probab=34.76 E-value=39 Score=33.03 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+|.|+|+ .||||.+..|+.-|
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
Confidence 58999997 78999999999876
No 337
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=34.75 E-value=37 Score=28.90 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=19.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCc
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~ 122 (378)
+|.|+|. .||||++..|+..| |+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g~~ 27 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---SLK 27 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCc
Confidence 6899997 78999999887755 554
No 338
>TIGR03549 conserved hypothetical protein TIGR03549. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. This family has an OsmC-like N-terminal domain. It shares a central domain, modeled by pfam02624 and TIGR00702, with other families of smaller proteins. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may be fortuitous.
Probab=34.45 E-value=39 Score=36.54 Aligned_cols=43 Identities=30% Similarity=0.405 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHhCC---------CCCCCcEEEEe-------CCCChHHHH-HHHHHHHHH
Q 017061 76 DLGRMNRLMDRLGN---------PHSKFKTVHIA-------GTKGKGSTA-AFLSSILRA 118 (378)
Q Consensus 76 ~L~r~~~ll~~lg~---------p~~~~~~I~VT-------GTnGKtSTt-~~l~~iL~~ 118 (378)
.+.||+..|+.+|. |.+.+-++|+. +|||||.|. +.+++.|.+
T Consensus 161 TI~~~~~~L~~lg~~i~~~s~~~~vp~~~Sv~~~d~~~~~~~tnGKGas~~~AlASAlgE 220 (718)
T TIGR03549 161 TIANMTAILADLGMKIEIASWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGE 220 (718)
T ss_pred HHHHHHHHHHHcCCCeEEeeccCCCCcEEEEEecccCCCcccCCCCcCCHHHHHHHHHHH
Confidence 36799999999884 33333366776 699998765 445555543
No 339
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=34.10 E-value=92 Score=33.95 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHHHHc
Q 017061 91 HSKFKTVHIAGT--KGKGSTAAFLSSILRAE 119 (378)
Q Consensus 91 ~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~ 119 (378)
..+-++++..|- -||||.+.-|+..|...
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk 465 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRK 465 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCc
Confidence 456789999995 89999999999888654
No 340
>PRK04182 cytidylate kinase; Provisional
Probab=33.99 E-value=38 Score=29.07 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.1
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+|.|+|. .||||.+..|+.-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 6889996 89999999998765
No 341
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=33.71 E-value=1.2e+02 Score=33.59 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=22.0
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHc
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAE 119 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~ 119 (378)
.+.+++.+.|- .||||++..|+..+...
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34567888885 78999999999887544
No 342
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=33.45 E-value=70 Score=32.18 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=27.6
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
..+|.|-|= .||||.+++|+.-|-+.|++++..
T Consensus 73 ~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~ii 107 (398)
T COG1341 73 VGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAII 107 (398)
T ss_pred CcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEE
Confidence 346666663 899999999999999999998875
No 343
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=32.82 E-value=43 Score=29.03 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=20.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHc
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAE 119 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~ 119 (378)
++|.|+|. .||||+...|+..|...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 36889996 68999999998887543
No 344
>PRK14530 adenylate kinase; Provisional
Probab=32.82 E-value=46 Score=30.04 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=18.3
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+.|.|.|. .||||.+..|+..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 46888886 79999999998776
No 345
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=32.80 E-value=1.3e+02 Score=31.76 Aligned_cols=53 Identities=25% Similarity=0.216 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHhCCCC-CCCcEEEEeC--CCChHHHHHHHHHHHHH-cCCceEee
Q 017061 74 GFDLGRMNRLMDRLGNPH-SKFKTVHIAG--TKGKGSTAAFLSSILRA-EGYSVGCY 126 (378)
Q Consensus 74 ~~~L~r~~~ll~~lg~p~-~~~~~I~VTG--TnGKtSTt~~l~~iL~~-~G~~vg~~ 126 (378)
.+.-..+.+.|..+-.|. ++-.+|.++| -.||||.+..|+..|.. .|.++-++
T Consensus 371 ~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~l 427 (568)
T PRK05537 371 WFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLL 427 (568)
T ss_pred hhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEe
Confidence 355556666777765443 3444899999 48999999999999987 66655543
No 346
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=32.77 E-value=3.7e+02 Score=26.20 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=50.2
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCccc-------cc--ceEEeeCCCCcccCHH
Q 017061 80 MNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIK-------TI--RERMNVGRLNRPVSAK 150 (378)
Q Consensus 80 ~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~-------~~--~eri~in~~G~~is~~ 150 (378)
+.++|+.+|.|.. ..+..|- -|..++...|+..|.+..++.-+.-. +- ++.-.+|.-|-.|++.
T Consensus 42 Va~vL~~lG~~~~---a~GflGg----~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~ 114 (310)
T COG1105 42 VARVLKDLGIPVT---ALGFLGG----FTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPEISEA 114 (310)
T ss_pred HHHHHHHcCCCce---EEEecCC----ccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCCCCCHH
Confidence 7789999998543 4555542 23467999999999988776443311 11 0123345558899999
Q ss_pred HHHHHHHHHHHHH
Q 017061 151 ALNCLFHKIKGVL 163 (378)
Q Consensus 151 ~~~~~~~~~~~~~ 163 (378)
++..+.+.+...+
T Consensus 115 ~~~~~l~~~~~~l 127 (310)
T COG1105 115 ELEQFLEQLKALL 127 (310)
T ss_pred HHHHHHHHHHHhc
Confidence 9888887666533
No 347
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=32.60 E-value=82 Score=30.78 Aligned_cols=31 Identities=29% Similarity=0.105 Sum_probs=22.1
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHHcCCceE
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg 124 (378)
.|.+.|-| .|||||.+..|.+-.-+.|+++-
T Consensus 99 gp~v~vvGgsq~Gkts~~~tL~syalk~~~~pl 131 (424)
T COG5623 99 GPTVMVVGGSQNGKTSFCFTLISYALKLGKKPL 131 (424)
T ss_pred CCEEEEECCCcCCceeHHHHHHHHHHHhcCCce
Confidence 45555555 59999999877776555688874
No 348
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=32.37 E-value=93 Score=30.02 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
....|.++|- .||||++.+|+..| |+++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L---g~~~ 161 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL---GVPF 161 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc---CCCE
Confidence 3457888884 79999999998776 5553
No 349
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=32.35 E-value=42 Score=30.88 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCCC--ChHHHHHHHHHHHHH
Q 017061 80 MNRLMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRA 118 (378)
Q Consensus 80 ~~~ll~~lg~p~~~~~~I~VTGTn--GKtSTt~~l~~iL~~ 118 (378)
..++++.+-.--.+-.++++=|-| ||||+-.||+.+|.-
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 345555555544566799999986 699999999999985
No 350
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=32.33 E-value=54 Score=33.88 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=43.5
Q ss_pred EEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061 97 VHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (378)
Q Consensus 97 I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (378)
|-|-|| .|||..++-+-.+|...|++|.=|-+.+ .+.|..|..+ |..|..+.+.++.
T Consensus 4 iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~QN-MsLNs~it~~--G~EIgraQ~~QA~ 63 (486)
T COG1492 4 IMVQGTTSDAGKSFLVAGLCRILARRGYRVAPFKSQN-MSLNSAITPG--GGEIGRAQALQAL 63 (486)
T ss_pred cEEEeccCCcchhhhhhhhhHHHHhcCCccCCCchhh-cccccEECCC--CcEEehhhhHHHH
Confidence 444454 8999999999999999999998776654 5677777777 8878766554443
No 351
>PRK13947 shikimate kinase; Provisional
Probab=32.20 E-value=50 Score=28.27 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
.|.|.|. .||||++..|+..| |++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCE
Confidence 4777774 89999999999887 5553
No 352
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=32.01 E-value=70 Score=28.59 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=20.0
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHc-CCceEeee
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAE-GYSVGCYT 127 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~-G~~vg~~t 127 (378)
.|.|+|- .||||+...+..-+... +.++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 5788886 57999988655555432 33444433
No 353
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=31.59 E-value=85 Score=32.65 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=54.0
Q ss_pred hHHHHHHHHH-hCCCCCCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCcc----------------------
Q 017061 77 LGRMNRLMDR-LGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPHI---------------------- 131 (378)
Q Consensus 77 L~r~~~ll~~-lg~p~~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~l---------------------- 131 (378)
|..++..|.. .+ ...+|.+-| +.||+++...|..-|...|++|..++.|.-
T Consensus 26 L~~LQ~~l~~~~~----~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~~~~flwRfw~~lP~~G~I~ 101 (493)
T TIGR03708 26 LLDLQYELLESAG----FPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERERPPMWRFWRRLPPKGKIG 101 (493)
T ss_pred HHHHHHHHHHccC----CeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHhcCcHHHHHHHhCCCCCeEE
Confidence 4445555544 33 224688888 699999999999999999999999988731
Q ss_pred ---cccceEEeeCCCCcccCHHHHHHHHHHHHH
Q 017061 132 ---KTIRERMNVGRLNRPVSAKALNCLFHKIKG 161 (378)
Q Consensus 132 ---~~~~eri~in~~G~~is~~~~~~~~~~~~~ 161 (378)
.++-+++.+..+...++++.+.+.+++|..
T Consensus 102 IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~ 134 (493)
T TIGR03708 102 IFFGSWYTRPLIERLEGRIDEAKLDSHIEDINR 134 (493)
T ss_pred EEcCcccchhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 111222222223345678888888877753
No 354
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=31.54 E-value=40 Score=34.48 Aligned_cols=47 Identities=23% Similarity=0.220 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHhCCCCCCCcEEEEeCC------CChHHHHHHHHHHHHHcCCceEe
Q 017061 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGT------KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 74 ~~~L~r~~~ll~~lg~p~~~~~~I~VTGT------nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+.+++-+++ +.+ .++-+.|.||+- -|||||+-=|.+.|.+.|+++..
T Consensus 37 Ki~~~~~~~----l~~-k~~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i~ 89 (554)
T COG2759 37 KISLEVIKR----LKN-KPDGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAII 89 (554)
T ss_pred hcCHHHHHh----hcc-CCCceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchheE
Confidence 355554443 332 234578999885 49999999999999999998743
No 355
>PHA00729 NTP-binding motif containing protein
Probab=31.39 E-value=1.5e+02 Score=27.51 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=24.2
Q ss_pred HHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHH
Q 017061 81 NRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 81 ~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
++.++.+... ....|.|+|| .|||+.+..|+.-|.
T Consensus 6 k~~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 6 KKIVSAYNNN--GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444444332 3357999998 789999988887654
No 356
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=31.32 E-value=40 Score=31.32 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=19.7
Q ss_pred CChHHHHHHHHHHHHHcCCceEee
Q 017061 103 KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 103 nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.||||-|+-+.+.+...|.++...
T Consensus 7 SGKTT~~~~~~~~~~~~~~~~~~v 30 (238)
T PF03029_consen 7 SGKTTFCKGLSEWLESNGRDVYIV 30 (238)
T ss_dssp SSHHHHHHHHHHHHTTT-S-EEEE
T ss_pred CCHHHHHHHHHHHHHhccCCceEE
Confidence 699999999999999999888654
No 357
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=31.27 E-value=84 Score=34.61 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcC
Q 017061 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEG 120 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G 120 (378)
.....++++.+.+-.-+.+.-++-=||| |||-|+--|-..|..+|
T Consensus 169 yQ~~AI~rv~Eaf~~g~~raLlvMATGT-GKTrTAiaii~rL~r~~ 213 (875)
T COG4096 169 YQIIAIRRVIEAFSKGQNRALLVMATGT-GKTRTAIAIIDRLIKSG 213 (875)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEecCC-CcceeHHHHHHHHHhcc
Confidence 3467788999998776666555666666 99999977777777666
No 358
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=31.02 E-value=1.4e+02 Score=26.99 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=25.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
.-.++.|+|. .|||+.+.-++.-+...|.+|..++
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4468899985 7899988766665556788886654
No 359
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.95 E-value=41 Score=27.88 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=53.3
Q ss_pred EEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccC------CCeEEEcCCCChhHHHHH
Q 017061 195 IAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY------GRPLVLGGPFLPHIEHIL 268 (378)
Q Consensus 195 ~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~------~~~~V~~~~d~~~~~~vl 268 (378)
-=|+|+|.|-.+|....+...-++ .+.|-|..+|.. .| +...+-.|++| +..+|+.-...|+....+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~~a~-~g-----~~~v~DDitnP~~~iY~~A~lIYSiRpppEl~~~i 87 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFD-VLATDINEKTAP-EG-----LRFVVDDITNPNISIYEGADLIYSIRPPPELQSAI 87 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCc-EEEEecccccCc-cc-----ceEEEccCCCccHHHhhCccceeecCCCHHHHHHH
Confidence 379999999988887776543344 366778777644 22 22223344544 344666644567777778
Q ss_pred HHHHHhhCCeEEEe
Q 017061 269 RDEASLMCSQVVSA 282 (378)
Q Consensus 269 ~~~a~~~~~~~~~~ 282 (378)
.+.+++.+++++..
T Consensus 88 ldva~aVga~l~I~ 101 (129)
T COG1255 88 LDVAKAVGAPLYIK 101 (129)
T ss_pred HHHHHhhCCCEEEE
Confidence 88899999998864
No 360
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=30.94 E-value=1e+02 Score=33.45 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=23.5
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHHHHc
Q 017061 91 HSKFKTVHIAGT--KGKGSTAAFLSSILRAE 119 (378)
Q Consensus 91 ~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~ 119 (378)
..+-++++..|= -||||...-|+..|...
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk 377 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRK 377 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCC
Confidence 345689999995 89999999999888654
No 361
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=30.40 E-value=2e+02 Score=28.13 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 78 GRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
..+..+|..=|.|.. .++-|.|. .||||.+.-+..-....|.+|..+...|
T Consensus 41 ~~LD~~Lg~GGlp~G--~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 41 LSLDLALGVGGLPRG--RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred HHHHHHhcCCCCcCC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 334444432255533 57888884 8999997655544555687887765554
No 362
>PRK07078 hypothetical protein; Validated
Probab=30.36 E-value=82 Score=34.61 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.6
Q ss_pred eCCCChHHHHHHHHHHHHHc
Q 017061 100 AGTKGKGSTAAFLSSILRAE 119 (378)
Q Consensus 100 TGTnGKtSTt~~l~~iL~~~ 119 (378)
+|-||||+...+|..+|-..
T Consensus 499 ~G~NGKSt~l~~l~~llG~y 518 (759)
T PRK07078 499 TGANGKSVFVNTLATILGDY 518 (759)
T ss_pred CCCCCchHHHHHHHHHhhhh
Confidence 57799999999999999763
No 363
>PRK08116 hypothetical protein; Validated
Probab=30.36 E-value=1.2e+02 Score=28.62 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=24.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+-+.|. .|||..+..|++-|...|++|...
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4677775 799999999999888888887543
No 364
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=30.28 E-value=51 Score=29.15 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=20.1
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
+|.|+|- .||||++.+|+..| |++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~ 28 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL 28 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce
Confidence 5788884 79999999999776 6764
No 365
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=30.20 E-value=81 Score=38.26 Aligned_cols=66 Identities=20% Similarity=0.158 Sum_probs=0.0
Q ss_pred chhhhhhcccccccccccCCCCCccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEE
Q 017061 20 SRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHI 99 (378)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~V 99 (378)
+|.-|++..+...||++-+-+.... +.|+ +.+++..+-+..+-+ .||=
T Consensus 425 gRc~L~k~~~~i~s~s~nsfAfTs~-sl~l------------------------------leql~~~Iq~nep~L-LVGe 472 (4600)
T COG5271 425 GRCALTKTEIPIISLSGNSFAFTSC-SLWL------------------------------LEQLLWNIQNNEPTL-LVGE 472 (4600)
T ss_pred hhhhhhhccccceeecccceeehhh-HHHH------------------------------HHHHHHHhccCCceE-EEec
Q ss_pred eCCCChHHHHHHHHHHHHH
Q 017061 100 AGTKGKGSTAAFLSSILRA 118 (378)
Q Consensus 100 TGTnGKtSTt~~l~~iL~~ 118 (378)
||| ||||+...|+-.|..
T Consensus 473 TGt-GKTT~IQ~La~~l~~ 490 (4600)
T COG5271 473 TGT-GKTTMIQYLALKLHF 490 (4600)
T ss_pred CCC-chhhHHHHHHHHhhh
No 366
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=30.16 E-value=76 Score=28.73 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=20.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHHH-HcCCceEee
Q 017061 95 KTVHIAGTKGKGSTAAFLSSILR-AEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGTnGKtSTt~~l~~iL~-~~G~~vg~~ 126 (378)
-++|-|| .|||.|+..|-.=+. ..|.++.+|
T Consensus 27 ~I~G~TG-sGKS~~~~~ll~~l~~~~~~~~ii~ 58 (229)
T PF01935_consen 27 AIFGTTG-SGKSNTVKVLLEELLKKKGAKVIIF 58 (229)
T ss_pred EEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3444455 499999876666555 777777654
No 367
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=30.10 E-value=3.8e+02 Score=23.56 Aligned_cols=31 Identities=32% Similarity=0.308 Sum_probs=26.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
+--+|=|||- .||+|.+..|.+.|.+.|.-+
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~ 62 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLT 62 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceE
Confidence 3468999994 799999999999999999755
No 368
>PRK00023 cmk cytidylate kinase; Provisional
Probab=30.06 E-value=54 Score=30.10 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.3
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+|+|+|. .||||++.+|+.-|
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 68999997 79999999998766
No 369
>PRK10586 putative oxidoreductase; Provisional
Probab=29.84 E-value=3.5e+02 Score=26.80 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEe
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
-++++..+++.+|. -+++.|+|....-.+...+...|++.|..+..
T Consensus 21 a~~~l~~~~~~~g~----~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~~ 66 (362)
T PRK10586 21 SIDHLHDFFTDEQL----SRAVWIYGERAIAAAQPYLPPAFELPGAKHIL 66 (362)
T ss_pred HHHHHHHHHHhcCC----CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEE
Confidence 37888888888874 25788999877766667778889998876543
No 370
>PRK06851 hypothetical protein; Provisional
Probab=29.48 E-value=1.4e+02 Score=29.75 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=31.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
+.+.|+|- .||||....+...+.+.|++|..|-.|.
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~ 252 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF 252 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 57999984 8999999999999999999999986663
No 371
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=29.30 E-value=63 Score=28.50 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=26.0
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
..-+.+.|+ .|||-.+..|..-+...|++|-.++.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~ 85 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD 85 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc
Confidence 346778886 7899999999887878999987655443
No 372
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=29.28 E-value=2e+02 Score=25.17 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.6
Q ss_pred EEEEeCC--CChHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSS 114 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~ 114 (378)
+|.|+|. .|||+.+..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 6889987 899999887754
No 373
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=29.09 E-value=85 Score=36.16 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHH-HHHHHHHHHcCCceEeeeCC
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTA-AFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt-~~l~~iL~~~G~~vg~~tSp 129 (378)
..+.+.++.+.+.+.+++.-+++=||| |||=|+ .++..+++....+-.+|..|
T Consensus 418 Q~~AI~ai~~a~~~g~r~~Ll~maTGS-GKT~tai~li~~L~~~~~~~rVLfLvD 471 (1123)
T PRK11448 418 QEDAIQAVEKAIVEGQREILLAMATGT-GKTRTAIALMYRLLKAKRFRRILFLVD 471 (1123)
T ss_pred HHHHHHHHHHHHHhccCCeEEEeCCCC-CHHHHHHHHHHHHHhcCccCeEEEEec
Confidence 356677777776543444445555665 999775 45566666544444455443
No 374
>PRK08760 replicative DNA helicase; Provisional
Probab=29.07 E-value=2.1e+02 Score=29.58 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHHH-HHHHcCCceEee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSS-ILRAEGYSVGCY 126 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~~-iL~~~G~~vg~~ 126 (378)
|+..+.++.. |. ..-..|.|+| ..|||+.+.-++. +....|.+|++|
T Consensus 215 G~~~LD~~t~--G~--~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~f 264 (476)
T PRK08760 215 GYNDFDAMTA--GL--QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVF 264 (476)
T ss_pred CcHHHHHHhc--CC--CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEE
Confidence 4555555442 43 2334677776 5799999977664 555678888776
No 375
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=29.02 E-value=4.2e+02 Score=28.03 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=19.4
Q ss_pred cEEEEeCC--CChHHHH-HHHHHHHHHcCCceEeeeCC
Q 017061 95 KTVHIAGT--KGKGSTA-AFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt-~~l~~iL~~~G~~vg~~tSp 129 (378)
-.|.|||. .|||||- +++..+- ..+.++...-.|
T Consensus 317 Glilv~G~tGSGKTTtl~a~l~~~~-~~~~~i~tiEdp 353 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSLYTALNILN-TEEVNISTAEDP 353 (564)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhC-CCCceEEEecCC
Confidence 46889985 7898886 4444432 223454443333
No 376
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=28.97 E-value=87 Score=30.74 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=20.9
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHH-cCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRA-EGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~-~G~~vg~~ 126 (378)
..|.|+|. .|||||...+..-+.. .+.++..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti 157 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI 157 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE
Confidence 57999997 4599999766554443 23455443
No 377
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=28.92 E-value=4.4e+02 Score=26.08 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCC-CCh-HHHHHHHHHHHHHcCCceEee
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGT-KGK-GSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGT-nGK-tSTt~~l~~iL~~~G~~vg~~ 126 (378)
++.+...++.++ -+++.|||. ..+ +-...-+...|+..|..+..|
T Consensus 17 ~~~l~~~~~~~~-----~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~ 63 (382)
T cd08187 17 ESELGKELKKYG-----KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVEL 63 (382)
T ss_pred HHHHHHHHHHhC-----CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEE
Confidence 666777777764 267778874 333 334567888899999887765
No 378
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=28.90 E-value=1.8e+02 Score=25.87 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
++++++++. ....+.|.+.|- .|||+.+..+..-+...|.++
T Consensus 26 ~~~l~~~~~-----~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~ 69 (226)
T TIGR03420 26 LAALRQLAA-----GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSA 69 (226)
T ss_pred HHHHHHHHh-----cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcE
Confidence 455555543 123457888885 789999999988887766654
No 379
>PRK07952 DNA replication protein DnaC; Validated
Probab=28.46 E-value=1.1e+02 Score=28.49 Aligned_cols=33 Identities=30% Similarity=0.280 Sum_probs=26.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..+.+.|. .|||..+..|+.-|...|++|..++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 35666663 7999999999999988898886543
No 380
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=28.46 E-value=1.2e+02 Score=32.15 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=18.3
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHH
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSS 114 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~ 114 (378)
++.|+|-|-|= |||||.--.+..
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRk 175 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRK 175 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhh
Confidence 47899999995 999997666543
No 381
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=28.04 E-value=3.4e+02 Score=26.62 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=26.0
Q ss_pred CCCCCCcEEEEeCC--CChHHHHHHHHHHHH-HcCCceEee
Q 017061 89 NPHSKFKTVHIAGT--KGKGSTAAFLSSILR-AEGYSVGCY 126 (378)
Q Consensus 89 ~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~-~~G~~vg~~ 126 (378)
.|..++|+-.|||= .||||. |.+||. .+|+|+++.
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTL---Ln~Il~~~hgKRIAVI 89 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTL---LNYILTGQHGKRIAVI 89 (391)
T ss_pred CCCCccceEEEEecccCChHHH---HHHHHccCCCceEEEE
Confidence 34568899999994 788864 556665 589999884
No 382
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=27.93 E-value=71 Score=30.37 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 91 HSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 91 ~~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
+..+|+|-|-| -.||||++.-|+--|...+.+|-++++
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiIST 55 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIIST 55 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeec
Confidence 35678888875 599999999999999988888876655
No 383
>PRK05636 replicative DNA helicase; Provisional
Probab=27.84 E-value=2.4e+02 Score=29.43 Aligned_cols=33 Identities=15% Similarity=0.038 Sum_probs=22.9
Q ss_pred CcEEEEeC--CCChHHHHHHHH-HHHHHcCCceEee
Q 017061 94 FKTVHIAG--TKGKGSTAAFLS-SILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~-~iL~~~G~~vg~~ 126 (378)
-..|.|+| ..|||+.+--++ ++....|.+|++|
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~f 300 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIF 300 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 34677787 479999776544 4455668888776
No 384
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.46 E-value=1.1e+02 Score=33.03 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHH
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRA 118 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~ 118 (378)
++.++.++...-.+...-+++.++|- .||||++.+++..+..
T Consensus 93 i~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 93 IEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred HHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45566666665554445567999997 6899999999987753
No 385
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=27.43 E-value=46 Score=31.60 Aligned_cols=42 Identities=29% Similarity=0.456 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCce
Q 017061 78 GRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~v 123 (378)
+.+-++.+.|..|..+.-.||+.| .||.|.+.+.+++. |+++
T Consensus 18 ~hi~ri~RvL~~~~Gh~LLvG~~G-sGr~sl~rLaa~i~---~~~~ 59 (268)
T PF12780_consen 18 EHIARISRVLSQPRGHALLVGVGG-SGRQSLARLAAFIC---GYEV 59 (268)
T ss_dssp HHHHHHHHHHCSTTEEEEEECTTT-SCHHHHHHHHHHHT---TEEE
T ss_pred HHHHHHHHHHcCCCCCeEEecCCC-ccHHHHHHHHHHHh---ccce
Confidence 445555566777776777888878 79999999999876 4555
No 386
>PRK00300 gmk guanylate kinase; Provisional
Probab=27.39 E-value=60 Score=28.74 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=20.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
...+|+|.|. .||||.+.+|...+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3468999997 589999999988765
No 387
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.34 E-value=3.5e+02 Score=22.74 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=28.8
Q ss_pred EEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061 97 VHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (378)
Q Consensus 97 I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (378)
++..|.-+-.-=..+++.+|+.+||+|.. +|..++.+++.+.
T Consensus 8 ~~~~~gD~H~lG~~iv~~~lr~~G~eVi~-----------------LG~~vp~e~i~~~ 49 (137)
T PRK02261 8 LGVIGADCHAVGNKILDRALTEAGFEVIN-----------------LGVMTSQEEFIDA 49 (137)
T ss_pred EEeCCCChhHHHHHHHHHHHHHCCCEEEE-----------------CCCCCCHHHHHHH
Confidence 34445555555557899999999999854 2777887766543
No 388
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=27.26 E-value=4.2e+02 Score=23.07 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=17.7
Q ss_pred EEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.|+|. .|||+.+..+.. ..|.++..+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~---~~~~~~~y~ 30 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAA---ELGGPVTYI 30 (169)
T ss_pred EEEECCCCCCHHHHHHHHHH---hcCCCeEEE
Confidence 567764 899999877643 356566443
No 389
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=27.25 E-value=1.1e+02 Score=28.66 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=27.7
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHHcCCc-eEee
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYS-VGCY 126 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~-vg~~ 126 (378)
+|.|.|+| ..|||+-+.-|...|.+.|.| +..+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~i 36 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRI 36 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEE
Confidence 46799999 699999999999999999965 4443
No 390
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=26.95 E-value=1.7e+02 Score=26.16 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=26.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
.++.|+|- .|||+.+..++.-+...|.+|..++
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 56888874 8999999888877777788886654
No 391
>PRK06904 replicative DNA helicase; Validated
Probab=26.94 E-value=3.4e+02 Score=27.98 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHH-HHHHHcCCceEee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLS-SILRAEGYSVGCY 126 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~-~iL~~~G~~vg~~ 126 (378)
|+..+.+++. |.. .-..|.|+| .-|||+.+--++ ++....|.+|++|
T Consensus 207 G~~~LD~~t~--Gl~--~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~f 256 (472)
T PRK06904 207 GFTDLDKKTA--GLQ--PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVF 256 (472)
T ss_pred ChHHHHHHHh--ccC--CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEE
Confidence 4555555553 442 334577777 469999885444 4445568888776
No 392
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=26.94 E-value=1.9e+02 Score=24.34 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=29.8
Q ss_pred HHHHHHH-HHhCCCCCCCc-EEEEeCC--CChHHHHHHHHHHHHHcCCc
Q 017061 78 GRMNRLM-DRLGNPHSKFK-TVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 78 ~r~~~ll-~~lg~p~~~~~-~I~VTGT--nGKtSTt~~l~~iL~~~G~~ 122 (378)
+.+-.++ ..+.+|..+.| ++..-|. .||+-++.||+.-|-..|.+
T Consensus 35 ~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~ 83 (127)
T PF06309_consen 35 EVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMK 83 (127)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccC
Confidence 3333333 34566554444 5566665 58999999999998877754
No 393
>COG1084 Predicted GTPase [General function prediction only]
Probab=26.74 E-value=1.1e+02 Score=30.11 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=20.6
Q ss_pred CCCCCcEEEEeC--CCChHHHHHHHHHH
Q 017061 90 PHSKFKTVHIAG--TKGKGSTAAFLSSI 115 (378)
Q Consensus 90 p~~~~~~I~VTG--TnGKtSTt~~l~~i 115 (378)
-+.+.++|.|+| -.||||..+-|+..
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~A 191 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTA 191 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcC
Confidence 356889999999 58999987776643
No 394
>PRK00131 aroK shikimate kinase; Reviewed
Probab=26.71 E-value=79 Score=26.80 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.4
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHH
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSIL 116 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL 116 (378)
.+.|.++| ..||||++..|+..|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 35788888 489999999999887
No 395
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=26.59 E-value=64 Score=28.74 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=19.7
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.++|.|||- .||||++......|
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 478888885 78999999999888
No 396
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=26.56 E-value=5.8e+02 Score=25.36 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCCCChH-HHHHHHHHHHHHcCCceEeee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKG-STAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKt-STt~~l~~iL~~~G~~vg~~t 127 (378)
.++++...++.+|. -+++.|||..=|. -...-+...|++.|..+..|.
T Consensus 18 ~~~~l~~~~~~~g~----~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~ 66 (383)
T PRK09860 18 SLTDAMNMMADYGF----TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYD 66 (383)
T ss_pred HHHHHHHHHHhcCC----CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeC
Confidence 47788888888873 2667788753232 245578888888898776653
No 397
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=26.41 E-value=29 Score=27.08 Aligned_cols=27 Identities=11% Similarity=0.347 Sum_probs=23.8
Q ss_pred eeeeeCCCchhhhhhcccccccccccC
Q 017061 12 TTTFYSPTSRGYFKKFSIGSKSCFFST 38 (378)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (378)
+++..||.-||+|++|..+.+.=+|-+
T Consensus 5 v~~~vP~~lRG~Ltrwl~Ei~~GVyVg 31 (86)
T PF09707_consen 5 VLEAVPPRLRGFLTRWLLEIRPGVYVG 31 (86)
T ss_pred EEecCChhHhchhhheeEecCCCcEEc
Confidence 577889999999999999999877755
No 398
>PRK03839 putative kinase; Provisional
Probab=26.19 E-value=71 Score=27.75 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=17.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.|.|+|. .||||.+..|+.-|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 3777775 79999999998877
No 399
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=26.11 E-value=2e+02 Score=32.76 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=27.1
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEe
Q 017061 92 SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 92 ~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+.+.+|+=||+ ||||.-.+.+.-+...|.++-.
T Consensus 98 ~SFaiiAPTGv-GKTTfg~~~sl~~a~kgkr~yi 130 (1187)
T COG1110 98 KSFAIIAPTGV-GKTTFGLLMSLYLAKKGKRVYI 130 (1187)
T ss_pred CceEEEcCCCC-chhHHHHHHHHHHHhcCCeEEE
Confidence 45667777775 9999999999999999988754
No 400
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.10 E-value=1.2e+02 Score=32.10 Aligned_cols=50 Identities=22% Similarity=0.433 Sum_probs=37.2
Q ss_pred hHHHHHHHHHh--CCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 77 LGRMNRLMDRL--GNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 77 L~r~~~ll~~l--g~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
++.++.+|..+ -.|....++.-|||= .|||||...|+.+| |+.+-=+.-|
T Consensus 91 I~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel---g~~~~Ew~Np 144 (634)
T KOG1970|consen 91 ISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL---GYQLIEWSNP 144 (634)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh---CceeeeecCC
Confidence 67788888843 345555569999995 78999999998776 7777655544
No 401
>PRK07261 topology modulation protein; Provisional
Probab=26.09 E-value=70 Score=27.85 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=16.2
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.|.|.|. .||||.+..|+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 3677776 68999999887654
No 402
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.92 E-value=2.1e+02 Score=23.31 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCceEe
Q 017061 109 AAFLSSILRAEGYSVGC 125 (378)
Q Consensus 109 t~~l~~iL~~~G~~vg~ 125 (378)
..|++.+|+.+|++|..
T Consensus 16 ~~~~~~~l~~~G~~vi~ 32 (122)
T cd02071 16 AKVIARALRDAGFEVIY 32 (122)
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 37888999999999853
No 403
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=25.91 E-value=1.1e+02 Score=26.27 Aligned_cols=31 Identities=23% Similarity=0.057 Sum_probs=21.2
Q ss_pred EEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 97 I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+.|+|. .|||+.+.-+..-....|.+|..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 567775 5799988765554446788886553
No 404
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=25.85 E-value=1.1e+02 Score=28.49 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=22.6
Q ss_pred cEEEEeCC--CChHHHHHHHHH-HHHHcCCceEeee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSS-ILRAEGYSVGCYT 127 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~-iL~~~G~~vg~~t 127 (378)
.++.|+|. .|||+.+.-++. +....|.+|..++
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 46788884 689997765544 4444588887653
No 405
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=25.83 E-value=1.2e+02 Score=28.61 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 78 GRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+..-..|+.++. +.+.|-+.++|- .||||....|++.|---.|+-|+
T Consensus 33 e~tv~rl~via~-~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~v 81 (333)
T KOG0991|consen 33 EDTVERLSVIAK-EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAV 81 (333)
T ss_pred HHHHHHHHHHHH-cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHh
Confidence 333344444432 356788899985 78999999999988644466554
No 406
>PRK08006 replicative DNA helicase; Provisional
Probab=25.78 E-value=7.5e+02 Score=25.50 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=22.4
Q ss_pred cEEEEeC--CCChHHHHHHHH-HHHHHcCCceEee
Q 017061 95 KTVHIAG--TKGKGSTAAFLS-SILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTG--TnGKtSTt~~l~-~iL~~~G~~vg~~ 126 (378)
..|.|+| ..|||+.+--++ ++....|++|++|
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~f 259 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIF 259 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4677777 469999876554 4444568888776
No 407
>PF05729 NACHT: NACHT domain
Probab=25.77 E-value=92 Score=25.90 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=21.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCC
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGY 121 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~ 121 (378)
+++.|+|- .|||+++..+..-+...+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 35677775 7999999999998888763
No 408
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=25.75 E-value=64 Score=29.93 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.4
Q ss_pred EEEEeCC--CChHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLS 113 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~ 113 (378)
+|+|||- .||+|++.++.
T Consensus 2 iI~i~G~~gsGKstva~~~~ 21 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFII 21 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 7999996 89999988774
No 409
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=25.73 E-value=2.6e+02 Score=27.39 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
...+..+|.-=|.|.. .++-|.| ..||||.+..+..-....|-++..+.+.|
T Consensus 40 i~~LD~~Lg~GGlp~G--~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 40 SLSLDIALGIGGYPKG--RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred CHHHHHHhcCCCccCC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 3344444432245544 5677887 58999999877666666787887665544
No 410
>PRK09183 transposase/IS protein; Provisional
Probab=25.68 E-value=95 Score=29.18 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=25.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
..+.+.|- .|||+.+..|...+...|++|..+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45677775 689999999988888889988654
No 411
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=25.64 E-value=1.1e+02 Score=32.06 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.7
Q ss_pred CCCChHHHHHHHHHHHHHc
Q 017061 101 GTKGKGSTAAFLSSILRAE 119 (378)
Q Consensus 101 GTnGKtSTt~~l~~iL~~~ 119 (378)
|-|||||...+|..||-..
T Consensus 239 G~nGKstf~~li~~llG~~ 257 (517)
T COG3378 239 GGNGKSTFVDLISNLLGRY 257 (517)
T ss_pred CCCChHHHHHHHHHHhccc
Confidence 6699999999999999654
No 412
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.40 E-value=4.3e+02 Score=25.75 Aligned_cols=45 Identities=16% Similarity=0.322 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEee
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++.+...++.+| -+++.|||.+........+...|+++|..+..|
T Consensus 11 ~~~l~~~~~~~~-----~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~ 55 (345)
T cd08171 11 YKKIPEVCEKYG-----KKVVVIGGKTALAAAKDKIKAALEQSGIEITDF 55 (345)
T ss_pred HHHHHHHHHhcC-----CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 666666666654 267889987655556777888898888876544
No 413
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=25.38 E-value=1.5e+02 Score=29.51 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=17.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
..|.|+|- .|||||...+...+.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57999986 689999877766654
No 414
>PRK13949 shikimate kinase; Provisional
Probab=25.38 E-value=74 Score=27.71 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=18.4
Q ss_pred EEEEeCC--CChHHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
.|.|.|. .||||++.+|+..|.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 4778886 789999999998883
No 415
>CHL00181 cbbX CbbX; Provisional
Probab=25.36 E-value=1.7e+02 Score=27.99 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=26.4
Q ss_pred HHHhCCCCCC-CcEEEEeCC--CChHHHHHHHHHHHHHcCC
Q 017061 84 MDRLGNPHSK-FKTVHIAGT--KGKGSTAAFLSSILRAEGY 121 (378)
Q Consensus 84 l~~lg~p~~~-~~~I~VTGT--nGKtSTt~~l~~iL~~~G~ 121 (378)
.+.+|.+..+ ...|.+.|- .|||+++..++.++...|+
T Consensus 48 ~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 48 RKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred HHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3446654332 223566664 7999999999999988776
No 416
>PRK14528 adenylate kinase; Provisional
Probab=25.34 E-value=80 Score=27.90 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=18.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+.|.|.|. .||||.+..|+.-+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 46788887 79999999997665
No 417
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=25.32 E-value=75 Score=29.06 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+|+|+|. .||||++.+|+.-|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 47999996 78999999998755
No 418
>PRK08506 replicative DNA helicase; Provisional
Probab=25.22 E-value=2.5e+02 Score=28.90 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++..+..++. |.. .-..|.|+| ..|||+.+.-++.=....|.+|.+|
T Consensus 178 G~~~LD~~~~--G~~--~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~f 226 (472)
T PRK08506 178 GFVELNKMTK--GFN--KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFF 226 (472)
T ss_pred ChHHHHhhcC--CCC--CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEE
Confidence 4555555542 443 234677777 4699998876654444568888776
No 419
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=25.21 E-value=5.2e+02 Score=25.53 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCCCC--hHHHHHHHHHHHHHcCCceEee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKG--KGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTnG--KtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.++++...++.+| -+++.|||.+- |+-...-+...|++.|..+..|
T Consensus 13 ~l~~l~~~~~~~g-----~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~ 60 (380)
T cd08185 13 KLNELGEEALKPG-----KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVF 60 (380)
T ss_pred HHHHHHHHHHhcC-----CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEe
Confidence 3778888887765 26889998664 5666677888889889877655
No 420
>PLN02318 phosphoribulokinase/uridine kinase
Probab=25.20 E-value=74 Score=34.02 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
...+|+|+|- .||||.+..|...+
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 4568999995 68999999999887
No 421
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=25.16 E-value=72 Score=28.71 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=18.3
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+|.|+|+ .||||.+..|+.-+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 58999997 78999998887764
No 422
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=25.13 E-value=1e+02 Score=28.69 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCC
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGY 121 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~ 121 (378)
....+.+.|- .||||++..++..|...|.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~ 71 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNV 71 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCc
Confidence 3445667774 7999999999999977653
No 423
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=25.10 E-value=4.3e+02 Score=26.00 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCCCChHH-HHHHHHHHHHHcCCceEee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGS-TAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtS-Tt~~l~~iL~~~G~~vg~~ 126 (378)
.++++...++.+|. -+++.|||.+=+.+ ...-+...|++.|..+..|
T Consensus 11 ~~~~l~~~l~~~g~----~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~ 58 (370)
T cd08192 11 AIKELPAECAELGI----KRPLIVTDPGLAALGLVARVLALLEDAGLAAALF 58 (370)
T ss_pred HHHHHHHHHHHcCC----CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEe
Confidence 37778888888763 25677887543333 5667888899989887665
No 424
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=25.07 E-value=64 Score=35.09 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=19.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+|+|+|+ .||||++..|+..|
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l 25 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYL 25 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 37999998 78999999999987
No 425
>PHA02542 41 41 helicase; Provisional
Probab=24.98 E-value=2.2e+02 Score=29.49 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=24.0
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
..|.|+| .-|||+.+.-++.-....|++|.+|
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~f 224 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYI 224 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 3567777 4799999987775555679999776
No 426
>PRK14527 adenylate kinase; Provisional
Probab=24.92 E-value=78 Score=27.87 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=19.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+.++|.|.|. .||||.+..|+.-+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999996 79999999887655
No 427
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=24.86 E-value=88 Score=24.51 Aligned_cols=29 Identities=31% Similarity=0.382 Sum_probs=21.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
..+.|.|. .|||+++..++..+...+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~ 33 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGV 33 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCE
Confidence 45777776 679999888888887765333
No 428
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=24.85 E-value=67 Score=30.01 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 78 GRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+.+.++|... -+....|.|+|. .||||+...+..-+.....++..
T Consensus 114 ~~~~~~l~~~---v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~ 160 (270)
T PF00437_consen 114 EEIAEFLRSA---VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVT 160 (270)
T ss_dssp HHHHHHHHHC---HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEE
T ss_pred HHHHHHHhhc---cccceEEEEECCCccccchHHHHHhhhccccccceEE
Confidence 4455555554 123357888875 78888887766655555455544
No 429
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=24.83 E-value=1.4e+02 Score=27.59 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHHH-HHHHcCCceEeee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSS-ILRAEGYSVGCYT 127 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~~-iL~~~G~~vg~~t 127 (378)
++..+.+++. |.... ..+.|+| ..|||+.+.-++. ++...|++|..|+
T Consensus 5 G~~~LD~~lg--G~~~g--~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S 55 (259)
T PF03796_consen 5 GFPALDRLLG--GLRPG--ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS 55 (259)
T ss_dssp STHHHHHHHS--SB-TT---EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred ChHHHHHHhc--CCCcC--cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc
Confidence 3455555553 43222 3566665 3699998855544 5555578887764
No 430
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=24.79 E-value=2.3e+02 Score=27.52 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCc-eEee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS-VGCY 126 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~-vg~~ 126 (378)
+.+.+++++..+|.+.. -++|..+|+ +-+++++..+|+..||+ |-+|
T Consensus 253 ~~~el~~~~~~~gi~~~-~~iv~yC~s---G~~A~~~~~~L~~~G~~~v~~Y 300 (320)
T PLN02723 253 PAEELKKRFEQEGISLD-SPIVASCGT---GVTACILALGLHRLGKTDVPVY 300 (320)
T ss_pred CHHHHHHHHHhcCCCCC-CCEEEECCc---HHHHHHHHHHHHHcCCCCeeEe
Confidence 45778888888886543 367777666 55677788889999985 5554
No 431
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=24.75 E-value=1e+02 Score=28.63 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHH
Q 017061 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 80 ~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
+.++.+.|-....+.++|.|.|- .|||+.+..+.+=..
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc
Confidence 34444444433356678888864 899999987775543
No 432
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=24.66 E-value=2.5e+02 Score=25.30 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=25.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.+.+.|. .|||+.+..++.-+...|.++..+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i 76 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYL 76 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 46778885 799999999998887777766543
No 433
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=24.29 E-value=52 Score=30.37 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=22.8
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHHcCCceE
Q 017061 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 95 ~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg 124 (378)
.+|+|=| ..||||++..|+.-|.-.-+.+|
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTG 36 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTG 36 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeeccc
Confidence 6899998 58999999999987754433333
No 434
>PRK05595 replicative DNA helicase; Provisional
Probab=24.26 E-value=2.8e+02 Score=28.16 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHH-HHHHcCCceEee
Q 017061 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSS-ILRAEGYSVGCY 126 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~-iL~~~G~~vg~~ 126 (378)
.++..+..++. |.. .-..|.|+|- .|||+.+.-++. +....|++|.+|
T Consensus 186 tg~~~ld~~~~--G~~--~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~f 236 (444)
T PRK05595 186 SGFRELDAKTS--GFQ--KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIF 236 (444)
T ss_pred CChHHHHHhcC--CCC--CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEE
Confidence 34555555542 442 3346777874 689999877765 445679999776
No 435
>PRK05748 replicative DNA helicase; Provisional
Probab=24.02 E-value=2.8e+02 Score=28.23 Aligned_cols=49 Identities=12% Similarity=0.225 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHH-HHHHHcCCceEeee
Q 017061 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLS-SILRAEGYSVGCYT 127 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~-~iL~~~G~~vg~~t 127 (378)
.++..+..++. |.+ .-..|.|+|- .|||+.+.-++ ++....|.+|.+|+
T Consensus 188 TG~~~LD~~~~--G~~--~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fS 239 (448)
T PRK05748 188 TGFTDLDKMTS--GLQ--PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFS 239 (448)
T ss_pred CChHHHHHhcC--CCC--CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEe
Confidence 34555655553 543 3346788874 68999886554 45556788887763
No 436
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=24.02 E-value=4.9e+02 Score=26.20 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCCCChHH-HHHHHHHHHHHcCCceEeee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGS-TAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtS-Tt~~l~~iL~~~G~~vg~~t 127 (378)
.++++...++.+|. -+++.|||.+=+.+ ...-+...|++.|..+..|.
T Consensus 10 ~~~~l~~~l~~~g~----~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~ 58 (414)
T cd08190 10 VTAEVGMDLKNLGA----RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYD 58 (414)
T ss_pred HHHHHHHHHHHcCC----CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeC
Confidence 37788888888873 26788888654443 34667778888898877653
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=23.97 E-value=2.1e+02 Score=26.18 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=23.0
Q ss_pred cEEEEeCC--CChHHHH-HHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTA-AFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt-~~l~~iL~~~G~~vg~~ 126 (378)
.++.|+|. .||||.+ .++...++ .|.++..+
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi 58 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYV 58 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEE
Confidence 48999998 5899995 67777665 57777543
No 438
>PRK07179 hypothetical protein; Provisional
Probab=23.85 E-value=7.1e+02 Score=24.54 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=47.2
Q ss_pred HHHHHHHhCCCC-CCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHH
Q 017061 80 MNRLMDRLGNPH-SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHK 158 (378)
Q Consensus 80 ~~~ll~~lg~p~-~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~ 158 (378)
+++.|+.+|..- ....++.|. -|....+..+...|.+.|.-+..+.+|........+|+. .+..++++++..+++.
T Consensus 315 l~~~L~~~g~~v~~~~~i~~l~--~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis-~~~~~t~edi~~~~~~ 391 (407)
T PRK07179 315 LREGLSELGYNIRSESQIIALE--TGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLS-LNADLTASDLDRVLEV 391 (407)
T ss_pred HHHHHHHcCCCCCCCCCEEEEE--eCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEE-ECCCCCHHHHHHHHHH
Confidence 445555555421 123466665 122223456667777888766556666432223455554 3566788888888877
Q ss_pred HHHHHHH
Q 017061 159 IKGVLDE 165 (378)
Q Consensus 159 ~~~~~~~ 165 (378)
++..+++
T Consensus 392 l~~~~~~ 398 (407)
T PRK07179 392 CREARDE 398 (407)
T ss_pred HHHHHHh
Confidence 7655443
No 439
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=23.83 E-value=4.9e+02 Score=25.90 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCCCCh-HHHHHHHHHHHHHcCCceE
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGK-GSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGK-tSTt~~l~~iL~~~G~~vg 124 (378)
+..+..+++.+.....+-|.+++=||-|- +.....+...|+..|.++.
T Consensus 316 ~~~~~~~l~~l~~~~~~~K~~a~FGsygw~g~a~~~~~~~l~~~g~~~v 364 (394)
T PRK11921 316 LSSTAAILEEIKGLGFKNKKAAAFGSYGWSGESVKIITERLKKAGFEIV 364 (394)
T ss_pred cHHHHHHHHHhhccCcCCCEEEEEecCCCccHHHHHHHHHHHHCCCEEc
Confidence 46678888887665556788999999876 5566788899999998863
No 440
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=23.67 E-value=76 Score=33.42 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=21.2
Q ss_pred CCCCcEEEEeC--CCChHHHHHHHHHH
Q 017061 91 HSKFKTVHIAG--TKGKGSTAAFLSSI 115 (378)
Q Consensus 91 ~~~~~~I~VTG--TnGKtSTt~~l~~i 115 (378)
+.++|-|.|.| +.||||+-.||++.
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHh
Confidence 46788888888 79999999999874
No 441
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=23.48 E-value=4.7e+02 Score=22.36 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=24.2
Q ss_pred HhcCCCEEEEeeCCCCCc-----ccccccccCCCcEEEEccCChh
Q 017061 189 AQNHVDIAVIEAGLGGAR-----DATNIISSSGLAASVITTIGEE 228 (378)
Q Consensus 189 ~~~~~d~~VlEvg~gg~~-----D~t~~~~~~~p~vaVITNI~~D 228 (378)
...++|++++=.+..... --.+.+. +|.++|||-++.+
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa~~f~--~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFASMFN--KPVIGVITKIDLP 102 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhhcccC--CCEEEEEECccCc
Confidence 346788888877543321 1233443 4789999998776
No 442
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=23.45 E-value=6.2e+02 Score=24.92 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCCC-ChHHHHHHHHHHHHHcCCceEee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTK-GKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTn-GKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.++++...++.+|. -+++.|||.+ -|+-...-+...|++.|..+..|
T Consensus 13 ~l~~l~~~l~~~~~----~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~ 60 (376)
T cd08193 13 SLARLGELLAALGA----KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVF 60 (376)
T ss_pred HHHHHHHHHHHcCC----CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEE
Confidence 37778788887763 2567788753 24335566777888888877654
No 443
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=23.39 E-value=61 Score=26.47 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=18.0
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHH
Q 017061 95 KTVHIAGTK--GKGSTAAFLSSILR 117 (378)
Q Consensus 95 ~~I~VTGTn--GKtSTt~~l~~iL~ 117 (378)
.+++|.|-| ||||...+|...+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 579999987 78888777776655
No 444
>PF12846 AAA_10: AAA-like domain
Probab=23.35 E-value=1.2e+02 Score=28.14 Aligned_cols=30 Identities=27% Similarity=0.234 Sum_probs=21.7
Q ss_pred EEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.|.|+ .|||++...+..-+...|..+..+
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~ 35 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF 35 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE
Confidence 445554 589988887777777778887665
No 445
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=23.26 E-value=6.8e+02 Score=24.11 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=28.5
Q ss_pred HHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhcccc
Q 017061 187 LFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK 249 (378)
Q Consensus 187 ~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik 249 (378)
.+.+.++|.+-++.... ..++...+. -.+++.-||.+..+-..| |.|+|.++=..+++
T Consensus 250 ~l~~~g~d~ls~d~~~~-l~~~~~~~g---~~~~i~Gnidp~~ll~~g-t~eeI~~~v~~~l~ 307 (340)
T TIGR01463 250 DIANNGCFGFSVDMKPG-MDHAKRVIG---GQASLVGNLSPFSTLMNG-TPEKVKKLAKEVLY 307 (340)
T ss_pred HHHHhCCCEEeecCCCC-HHHHHHHcC---CceEEEecCChHHHhcCC-CHHHHHHHHHHHHH
Confidence 34555666654443321 112222222 135667777665554444 66766665444444
No 446
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=23.24 E-value=3e+02 Score=28.65 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=47.9
Q ss_pred CCc-EEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCc--------c-----------------cccceEEeeCCCC
Q 017061 93 KFK-TVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH--------I-----------------KTIRERMNVGRLN 144 (378)
Q Consensus 93 ~~~-~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~--------l-----------------~~~~eri~in~~G 144 (378)
+.+ +|..-| +.|||.+..-|..-|.-.|++|..|..|. | .++-+|+.+..+.
T Consensus 297 ~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt~~E~~~~~lwRf~~~lP~~G~i~iFdRSwY~~vlverv~ 376 (493)
T TIGR03708 297 KRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAPTDEEKAQHYLWRFWRHIPRRGRITIFDRSWYGRVLVERVE 376 (493)
T ss_pred CCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCcCHHHHcCcHHHHHHHhCCCCCeEEEEcCCccCCcceeeec
Confidence 344 566677 89999999999999999999999998873 1 1222333333333
Q ss_pred cccCHHHHHHHHHHHHH
Q 017061 145 RPVSAKALNCLFHKIKG 161 (378)
Q Consensus 145 ~~is~~~~~~~~~~~~~ 161 (378)
..+++.++.+.+.+|..
T Consensus 377 g~~~~~~~~~~~~~I~~ 393 (493)
T TIGR03708 377 GFCSEAEWLRAYGEIND 393 (493)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 44678888888776653
No 447
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=23.01 E-value=67 Score=26.82 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=15.9
Q ss_pred EEEeCC--CChHHHHHHHHHHH
Q 017061 97 VHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 97 I~VTGT--nGKtSTt~~l~~iL 116 (378)
|.++|. .||||++..|+..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 566775 69999999998875
No 448
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=22.97 E-value=2e+02 Score=26.08 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=24.0
Q ss_pred CCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 88 GNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 88 g~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
|.|.. .++.|+|. .|||+.+..+..-....|.+|..++
T Consensus 21 G~~~g--~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 21 GIPFP--SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CCcCC--cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 55533 57999997 5677777665433234688886654
No 449
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=22.97 E-value=72 Score=27.61 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=16.7
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+|.|.|. .||||.+..|+.-+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 3677775 79999999988755
No 450
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=22.92 E-value=4.1e+02 Score=28.14 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=19.3
Q ss_pred CCEEEEeeCCCCCc------ccccccccCCCcEEEEc
Q 017061 193 VDIAVIEAGLGGAR------DATNIISSSGLAASVIT 223 (378)
Q Consensus 193 ~d~~VlEvg~gg~~------D~t~~~~~~~p~vaVIT 223 (378)
.||+|-|.|-|.-+ |..-......|+++|+.
T Consensus 314 adyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlV 350 (587)
T PRK13507 314 ADYHVTESGFGADIGFEKFWNLKCRLSGLKPDCAVIV 350 (587)
T ss_pred CCeEEeccccCCCCChhheeeeeccccCCCCCEEEEE
Confidence 59999999866533 33333334567766553
No 451
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=22.90 E-value=82 Score=31.78 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=23.9
Q ss_pred HHHHHHhCCCCC--CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 81 NRLMDRLGNPHS--KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 81 ~~ll~~lg~p~~--~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+.++.+..|-+ -.+.|+|+|. .||||.+..|+..+
T Consensus 204 ~~~w~~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 204 FRYWEYIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred HHHHHhcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344455544432 3567999984 89999998777643
No 452
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=22.72 E-value=2.3e+02 Score=23.86 Aligned_cols=87 Identities=15% Similarity=0.241 Sum_probs=43.5
Q ss_pred hcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChh----hHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHH
Q 017061 190 QNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEE----HTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIE 265 (378)
Q Consensus 190 ~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~D----Hld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~ 265 (378)
..+.+ -|+|+|.|...+....+...-.+ .+.|-|.+. ++.+. .+++..=...|.+ +.-+|+...-.++..
T Consensus 11 ~~~~~-kiVEVGiG~~~~vA~~L~~~G~d-V~~tDi~~~~a~~g~~~v---~DDif~P~l~iY~-~a~lIYSiRPP~El~ 84 (127)
T PF03686_consen 11 LNNYG-KIVEVGIGFNPEVAKKLKERGFD-VIATDINPRKAPEGVNFV---VDDIFNPNLEIYE-GADLIYSIRPPPELQ 84 (127)
T ss_dssp HS-SS-EEEEET-TT--HHHHHHHHHS-E-EEEE-SS-S----STTEE------SSS--HHHHT-TEEEEEEES--TTSH
T ss_pred hCCCC-cEEEECcCCCHHHHHHHHHcCCc-EEEEECcccccccCccee---eecccCCCHHHhc-CCcEEEEeCCChHHh
Confidence 34445 89999999988877666532223 356666665 33222 1111111111112 445666533456777
Q ss_pred HHHHHHHHhhCCeEEEe
Q 017061 266 HILRDEASLMCSQVVSA 282 (378)
Q Consensus 266 ~vl~~~a~~~~~~~~~~ 282 (378)
.-+.+.|++.+++++..
T Consensus 85 ~~il~lA~~v~adlii~ 101 (127)
T PF03686_consen 85 PPILELAKKVGADLIIR 101 (127)
T ss_dssp HHHHHHHHHHT-EEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 77888999999998864
No 453
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.65 E-value=1e+02 Score=29.45 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHHHHHH
Q 017061 80 MNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILR 117 (378)
Q Consensus 80 ~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~~iL~ 117 (378)
..-+|+.++. .--++|+.| |.||||+..+.+++.-
T Consensus 182 a~pLL~~l~~---~~~~~hl~G~Ss~GKTt~~~~a~Sv~G 218 (286)
T PF06048_consen 182 AAPLLSLLGV---EGFGFHLYGQSSSGKTTALQLAASVWG 218 (286)
T ss_pred HHHHHHHhCC---CceEEEEEeCCCCCHHHHHHHhhhhCc
Confidence 3445555663 334899998 5899988888877654
No 454
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.60 E-value=2.9e+02 Score=26.53 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=32.4
Q ss_pred cCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhH---hhcCCCHH-HHHHHHhcccc
Q 017061 191 NHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHT---AALGGSLE-TIAMAKSGIIK 249 (378)
Q Consensus 191 ~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHl---d~lG~tle-~ia~~Ka~Iik 249 (378)
++.|++|.-+|.-+..+... ++ |. +++-+++.... ...| +.+ +-+.+|++.+.
T Consensus 200 ~~ADIVV~avG~~~~i~~~~-ik---~g-avVIDVGin~~~~gkl~G-DVd~~~v~~~a~~iT 256 (285)
T PRK14189 200 RQADIVVAAVGKRNVLTADM-VK---PG-ATVIDVGMNRDDAGKLCG-DVDFAGVKEVAGYIT 256 (285)
T ss_pred hhCCEEEEcCCCcCccCHHH-cC---CC-CEEEEccccccCCCCeeC-CccHHHHHhhceEec
Confidence 57899999999877765433 33 33 57777776653 2445 333 44455665554
No 455
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=22.60 E-value=82 Score=30.33 Aligned_cols=48 Identities=25% Similarity=0.430 Sum_probs=35.1
Q ss_pred HHHHHhCCCCCCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCcc
Q 017061 82 RLMDRLGNPHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPHI 131 (378)
Q Consensus 82 ~ll~~lg~p~~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~l 131 (378)
+=++.+|- .++-+|-|||= .==+-=+++|..+|++.||+||+..-|-.
T Consensus 7 ~em~~rGW--d~lDvilVtGDAYVDHPsFG~AiIgR~Le~~GyrVgIiaQPdw 57 (302)
T PF08497_consen 7 EEMKARGW--DELDVILVTGDAYVDHPSFGAAIIGRVLEAHGYRVGIIAQPDW 57 (302)
T ss_pred HHHHHcCC--ccccEEEEeCcccccCcchhHHHHHHHHHHcCCeEEEEeCCCC
Confidence 33456665 35568999984 22233368999999999999999988864
No 456
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=22.60 E-value=93 Score=26.64 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=17.4
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.|.|+|. .||||++..|+.-|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 4777774 79999999999877
No 457
>PRK08939 primosomal protein DnaI; Reviewed
Probab=22.28 E-value=2.4e+02 Score=27.24 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=28.8
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
.+-+-+.|. .|||..+..|+.-|...|++|.+++.|
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 356777775 699999999999999999998766554
No 458
>PRK06703 flavodoxin; Provisional
Probab=22.09 E-value=4.7e+02 Score=21.82 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEeCCCChH-----HHHHHHHHHHHHcCCce
Q 017061 78 GRMNRLMDRLGNPHSKFKTVHIAGTKGKG-----STAAFLSSILRAEGYSV 123 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~~~~I~VTGTnGKt-----STt~~l~~iL~~~G~~v 123 (378)
+.+..+++.+.....+-+.++|-||-|.+ -....+...|++.|.++
T Consensus 66 ~~~~~f~~~l~~~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~ 116 (151)
T PRK06703 66 YEAEDFHEDLENIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAEL 116 (151)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEE
Confidence 35666666664322233457777776654 44556899999999875
No 459
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=22.09 E-value=5.7e+02 Score=22.76 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061 109 AAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (378)
Q Consensus 109 t~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (378)
..|++.+|+.+|++|.. +|..++.+++.+.
T Consensus 99 ~~~v~~~l~~~G~~vi~-----------------lG~~~p~~~l~~~ 128 (201)
T cd02070 99 KNLVATMLEANGFEVID-----------------LGRDVPPEEFVEA 128 (201)
T ss_pred HHHHHHHHHHCCCEEEE-----------------CCCCCCHHHHHHH
Confidence 58999999999999842 2777777766543
No 460
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=21.99 E-value=85 Score=32.80 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.9
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
...+|+|.|. .||||.+..|+..|
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999996 78999999999888
No 461
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=21.61 E-value=1.1e+02 Score=26.50 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
++|.++|- .||||.+..|...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57888884 899999999988764
No 462
>PRK13946 shikimate kinase; Provisional
Probab=21.58 E-value=1e+02 Score=27.09 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=20.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCc
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~ 122 (378)
+.|.++|- .||||+..+|+.-| |++
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L---g~~ 37 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML---GLP 37 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCC
Confidence 46888884 89999999999888 655
No 463
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=21.39 E-value=2.6e+02 Score=24.72 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=23.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
.++.|+|. .|||+.+.-+..-....|.+|..++
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 67999986 6788888666555556687876543
No 464
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=21.37 E-value=1.3e+02 Score=32.96 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=25.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+++.|+|- .||||+...+..+++..|++|...
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ 402 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGA 402 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 34555553 699999999999999999988654
No 465
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=21.36 E-value=1.2e+02 Score=31.99 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceE
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg 124 (378)
.-+.++++.+.+.+-.+.-...||||| |||=|. +.+..+.+.++-
T Consensus 17 QP~AI~~Lv~gi~~g~~~QtLLGvTGS-GKTfT~---AnVI~~~~rPtL 61 (663)
T COG0556 17 QPEAIAELVEGIENGLKHQTLLGVTGS-GKTFTM---ANVIAKVQRPTL 61 (663)
T ss_pred cHHHHHHHHHHHhcCceeeEEeeeccC-CchhHH---HHHHHHhCCCeE
Confidence 467788888888765555567999997 999764 455566665553
No 466
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=21.35 E-value=1.2e+02 Score=25.67 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCC--CCCCcEEEEeCCCChHHHHHH-HHHHHH
Q 017061 79 RMNRLMDRLGNP--HSKFKTVHIAGTKGKGSTAAF-LSSILR 117 (378)
Q Consensus 79 r~~~ll~~lg~p--~~~~~~I~VTGTnGKtSTt~~-l~~iL~ 117 (378)
-+.++++.+... ....-+.+.|| .|||=+... +..++.
T Consensus 11 ai~~i~~~~~~~~~~~~~ll~~~tG-sGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 11 AIARIINSLENKKEERRVLLNAPTG-SGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHTTSGCSEEEEEESTT-SSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCC-CCcChhhhhhhhcccc
Confidence 345555554432 23333445555 499998885 444444
No 467
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=21.22 E-value=2.5e+02 Score=25.16 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061 109 AAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (378)
Q Consensus 109 t~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (378)
..|++.+|+.+|++|.. +|..++.+++.+.
T Consensus 101 ~~~v~~~l~~~G~~vi~-----------------LG~~vp~e~~v~~ 130 (197)
T TIGR02370 101 KNIVVTMLRANGFDVID-----------------LGRDVPIDTVVEK 130 (197)
T ss_pred HHHHHHHHHhCCcEEEE-----------------CCCCCCHHHHHHH
Confidence 48999999999999853 2777887766544
No 468
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=21.15 E-value=1.5e+02 Score=34.18 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHc
Q 017061 79 RMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAE 119 (378)
Q Consensus 79 r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~ 119 (378)
+++++.+.+.....+.++|+|.|- -||||.+..++.-+...
T Consensus 192 ~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 192 HIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred HHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 455555556555567889999996 68999999998776653
No 469
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=21.13 E-value=1.1e+02 Score=26.18 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEeC-CCChHHHHHHHHHHHHHcCCceE
Q 017061 78 GRMNRLMDRLGNPHSKFKTVHIAG-TKGKGSTAAFLSSILRAEGYSVG 124 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~~~~I~VTG-TnGKtSTt~~l~~iL~~~G~~vg 124 (378)
+.+..+|.. .+.|+|-| |.=++.++..+..-|.++||++.
T Consensus 7 ~~i~~iL~~-------~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi 47 (140)
T COG1832 7 EDIAEILKS-------AKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI 47 (140)
T ss_pred HHHHHHHHh-------CceEEEEecCCCCCccHHHHHHHHHHCCCEEE
Confidence 445555554 46788887 45556778999999999999984
No 470
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=21.11 E-value=45 Score=31.64 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=23.3
Q ss_pred CCCcEEEEeCCC--ChHHHHHHHHHHHHH-cC
Q 017061 92 SKFKTVHIAGTK--GKGSTAAFLSSILRA-EG 120 (378)
Q Consensus 92 ~~~~~I~VTGTn--GKtSTt~~l~~iL~~-~G 120 (378)
+.-++.+.-|-| |||||-+||-.+|.. .|
T Consensus 26 ~~G~i~GllG~NGAGKTTtfRmILglle~~~G 57 (300)
T COG4152 26 PPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG 57 (300)
T ss_pred cCCeEEEeecCCCCCccchHHHHhccCCccCc
Confidence 345678888876 699999999999986 44
No 471
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=21.09 E-value=1.1e+02 Score=29.26 Aligned_cols=30 Identities=33% Similarity=0.436 Sum_probs=23.4
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.|+|+ |-.||||.+.-++.+|... |++.+.
T Consensus 3 ~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~ 35 (284)
T COG1149 3 QVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLA 35 (284)
T ss_pred EEEEeecCCCCChhhHHHHHHHHhccc-cceEEE
Confidence 46676 4579999999999999764 777664
No 472
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=21.03 E-value=72 Score=27.49 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLSSILR 117 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~~iL~ 117 (378)
+-.+++|+|.| ||||...+|..++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44589999985 79999999887765
No 473
>PRK07004 replicative DNA helicase; Provisional
Probab=20.99 E-value=2.7e+02 Score=28.64 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHH-HHHHHcCCceEee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLS-SILRAEGYSVGCY 126 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~-~iL~~~G~~vg~~ 126 (378)
++..+.++.. |.+ .-..|.|+| ..|||+.+.-++ ++....|.+|++|
T Consensus 199 G~~~LD~~t~--G~~--~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~f 248 (460)
T PRK07004 199 GFVDLDRMTS--GMH--GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVF 248 (460)
T ss_pred CcHHhccccc--CCC--CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEE
Confidence 3444544443 543 334577777 479999887655 4545678888876
No 474
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=20.97 E-value=2.7e+02 Score=27.43 Aligned_cols=31 Identities=39% Similarity=0.434 Sum_probs=19.7
Q ss_pred cEEEEe-CCCChHHHHHHH-HHHHHHcCCceEe
Q 017061 95 KTVHIA-GTKGKGSTAAFL-SSILRAEGYSVGC 125 (378)
Q Consensus 95 ~~I~VT-GTnGKtSTt~~l-~~iL~~~G~~vg~ 125 (378)
|.|+|- -|.|-|-|+++| .-||..+||....
T Consensus 368 KLV~iHPF~DGNGRTsRLLmNlilMraGyPPvi 400 (472)
T KOG3824|consen 368 KLVLIHPFTDGNGRTSRLLMNLILMRAGYPPVI 400 (472)
T ss_pred eeEEEeccccCCchHHHHHHHHHHHhcCCCCee
Confidence 556664 355555556554 5577889997644
No 475
>PRK02496 adk adenylate kinase; Provisional
Probab=20.95 E-value=1.1e+02 Score=26.67 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=17.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.|.|.|. .||||.+..|+..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 4778886 79999999998776
No 476
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=20.94 E-value=4.7e+02 Score=24.29 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCce---EeeeCCc
Q 017061 79 RMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV---GCYTSPH 130 (378)
Q Consensus 79 r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~v---g~~tSp~ 130 (378)
.|.++++.++..+....++.|+-+| +-+|.++|+++|++- -.||-|.
T Consensus 75 gm~~~l~~l~~~~~~~~~~IiSDaN-----s~fI~~iL~~~gl~~~f~~I~TNpa 124 (234)
T PF06888_consen 75 GMKELLRFLAKNQRGFDLIIISDAN-----SFFIETILEHHGLRDCFSEIFTNPA 124 (234)
T ss_pred cHHHHHHHHHhcCCCceEEEEeCCc-----HhHHHHHHHhCCCccccceEEeCCc
Confidence 3778888885445678899999888 799999999999863 2366664
No 477
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=20.90 E-value=6.2e+02 Score=24.67 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCc
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~ 122 (378)
.++++...++.+|. +++.|+|.+-.-....-+...|++.|..
T Consensus 10 ~~~~l~~~~~~~g~-----~~liv~~~~~~~~~~~~v~~~l~~~~i~ 51 (349)
T cd08550 10 AIKEIAAILSTFGS-----KVAVVGGKTVLKKSRPRFEAALAKSIIV 51 (349)
T ss_pred HHHHHHHHHHHcCC-----eEEEEEChHHHHHHHHHHHHHHHhcCCe
Confidence 37788888888762 4566887443334556677778877754
No 478
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=20.84 E-value=71 Score=27.15 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=15.1
Q ss_pred EEeCC--CChHHHHHHHHHHH
Q 017061 98 HIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 98 ~VTGT--nGKtSTt~~l~~iL 116 (378)
.+.|- .||||.+..|+.-|
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 45564 59999999999887
No 479
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=20.70 E-value=1.1e+02 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=16.9
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHc
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAE 119 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~ 119 (378)
..+.+.|+|- .|||+...-+..-+...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4478899985 78999999666666665
No 480
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=20.63 E-value=79 Score=27.83 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHH
Q 017061 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRA 118 (378)
Q Consensus 80 ~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~ 118 (378)
+..+|+..-. .-..|.|+|. .||||+...|...+..
T Consensus 14 ~~~~l~~~v~---~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 14 QAAYLWLAVE---ARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4444544432 3357899986 5899998888777653
No 481
>PRK00625 shikimate kinase; Provisional
Probab=20.43 E-value=1e+02 Score=27.14 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.7
Q ss_pred EEEeCC--CChHHHHHHHHHHH
Q 017061 97 VHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 97 I~VTGT--nGKtSTt~~l~~iL 116 (378)
|.++|. .||||++..|+.-|
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 667775 79999999998777
No 482
>PRK00105 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed
Probab=20.32 E-value=5.8e+02 Score=25.12 Aligned_cols=42 Identities=31% Similarity=0.529 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHhC----C--CC-CCCcEEEEeCCCC----------hHHHHHHHHHHHH
Q 017061 76 DLGRMNRLMDRLG----N--PH-SKFKTVHIAGTKG----------KGSTAAFLSSILR 117 (378)
Q Consensus 76 ~L~r~~~ll~~lg----~--p~-~~~~~I~VTGTnG----------KtSTt~~l~~iL~ 117 (378)
+|.++..+..+|+ . |. .+..++..+|-|| +..|..|+..++.
T Consensus 22 sLG~Le~la~~la~iqg~~~p~~~~~~~~vfaaDHGv~~~gvS~~p~~vT~~~~~n~~~ 80 (335)
T PRK00105 22 SLGRLEELAVQLAGIQGTEPPRVERPAVVVFAGDHGVAEEGVSAYPQEVTAQMVANFLA 80 (335)
T ss_pred chHHHHHHHHHHHHhhCCCCCCCCCCEEEEEeCCCCcccCCCCCCCHHHHHHHHHHHHh
Confidence 5778877777763 2 22 2456788889887 5666666666653
No 483
>PTZ00202 tuzin; Provisional
Probab=20.13 E-value=1.8e+02 Score=30.27 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCcccccceE--EeeCCCCcccCHHHH
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRER--MNVGRLNRPVSAKAL 152 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~er--i~in~~G~~is~~~~ 152 (378)
+..++.+|..++... .+++.|||. .||||.+..+..-+ + .+.+|.-|+ ++.|- -....+|.+- ...-
T Consensus 271 la~Lr~VL~~~d~~~--privvLtG~~G~GKTTLlR~~~~~l---~-~~qL~vNpr--g~eElLr~LL~ALGV~p-~~~k 341 (550)
T PTZ00202 271 ESWVRQVLRRLDTAH--PRIVVFTGFRGCGKSSLCRSAVRKE---G-MPAVFVDVR--GTEDTLRSVVKALGVPN-VEAC 341 (550)
T ss_pred HHHHHHHHhccCCCC--ceEEEEECCCCCCHHHHHHHHHhcC---C-ceEEEECCC--CHHHHHHHHHHHcCCCC-cccH
Confidence 666777776544322 248999997 57888777666433 3 566665554 21110 0011234321 1111
Q ss_pred HHHHHHHHHHHHHHHhh-c-----------CCCcC--HHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCc
Q 017061 153 NCLFHKIKGVLDEAIRL-E-----------NGCIT--HFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLA 218 (378)
Q Consensus 153 ~~~~~~~~~~~~~~~~~-~-----------~~~~t--~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~ 218 (378)
..++..+...+.++... + ..+++ |=|..++ .-+...=.+|+|+.+-.. -++|..-| +.|
T Consensus 342 ~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~l-----a~drr~ch~v~evplesl-t~~~~~lp-rld 414 (550)
T PTZ00202 342 GDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVAL-----ACDRRLCHVVIEVPLESL-TIANTLLP-RLD 414 (550)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHH-----HccchhheeeeeehHhhc-chhcccCc-cce
Confidence 23444555554444332 1 11121 2232221 112223357889876643 35565544 467
Q ss_pred EEEEccCChhh
Q 017061 219 ASVITTIGEEH 229 (378)
Q Consensus 219 vaVITNI~~DH 229 (378)
...|-|.+...
T Consensus 415 f~~vp~fsr~q 425 (550)
T PTZ00202 415 FYLVPNFSRSQ 425 (550)
T ss_pred eEecCCCCHHH
Confidence 77888877654
No 484
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=20.08 E-value=92 Score=27.23 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=17.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+...|+|.|. +||||+...|..-.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~ 27 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKA 27 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhc
Confidence 4568999995 99998776555433
No 485
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=20.05 E-value=1.1e+02 Score=34.28 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.3
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
.+|+|.|+ .||||++.+|+..|.
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~ 59 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLG 59 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 48999997 799999999998874
No 486
>PRK05569 flavodoxin; Provisional
Probab=20.02 E-value=2.6e+02 Score=22.98 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEeCCCChH--HHHHHHHHHHHHcCCce
Q 017061 78 GRMNRLMDRLGNPHSKFKTVHIAGTKGKG--STAAFLSSILRAEGYSV 123 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~~~~I~VTGTnGKt--STt~~l~~iL~~~G~~v 123 (378)
+.+..+++.+.....+-+.+++-||.|-+ .....+..+|+..|+++
T Consensus 67 ~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~ 114 (141)
T PRK05569 67 EEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNV 114 (141)
T ss_pred HHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeE
Confidence 46788888876444455677777887754 34556788899899876
No 487
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.02 E-value=92 Score=30.77 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=37.3
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEecC
Q 017061 323 DVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG 378 (378)
Q Consensus 323 ~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~g 378 (378)
.+++..-|+--+.-+-+|+++|..+ +|+.+.+.+|..+ |-.+.+.++|
T Consensus 189 gFrmh~~GE~DvRs~YcA~svasll-----ni~~deL~eG~~~---wi~~CQtyEG 236 (423)
T KOG0365|consen 189 GFRMHVEGEVDVRSAYCALSVASLL-----NIPMDELFEGTLD---WIASCQTYEG 236 (423)
T ss_pred CeEeecCCcchHHHHHHHHHHHHHH-----CCCcHHHHHHHHH---HHHhcccccC
Confidence 3556666888888899999999999 9999999999875 5555554443
No 488
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=20.01 E-value=1e+03 Score=25.29 Aligned_cols=101 Identities=21% Similarity=0.247 Sum_probs=61.4
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (378)
..++..+|+... ..|+|...-|. -.+.+|+.+|.++||++..+- + |.....-
T Consensus 505 ~kkL~eil~~~~----~ppiIIFvN~k---k~~d~lAk~LeK~g~~~~tlH-------------g--~k~qeQR------ 556 (673)
T KOG0333|consen 505 RKKLIEILESNF----DPPIIIFVNTK---KGADALAKILEKAGYKVTTLH-------------G--GKSQEQR------ 556 (673)
T ss_pred HHHHHHHHHhCC----CCCEEEEEech---hhHHHHHHHHhhccceEEEee-------------C--CccHHHH------
Confidence 455666666664 33666665554 357999999999999986642 1 2222111
Q ss_pred HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCC
Q 017061 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS 236 (378)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~t 236 (378)
.-|+..|.....|+.|. +...|++ ++. |+|+.+-|-... .+
T Consensus 557 -------------------------e~aL~~fr~~t~dIlVa-TDvAgRG-----IDI--pnVSlVinydma------ks 597 (673)
T KOG0333|consen 557 -------------------------ENALADFREGTGDILVA-TDVAGRG-----IDI--PNVSLVINYDMA------KS 597 (673)
T ss_pred -------------------------HHHHHHHHhcCCCEEEE-ecccccC-----CCC--Cccceeeecchh------hh
Confidence 11234577777887664 4555555 554 788888886442 46
Q ss_pred HHHHHHHH
Q 017061 237 LETIAMAK 244 (378)
Q Consensus 237 le~ia~~K 244 (378)
+++|...-
T Consensus 598 ieDYtHRI 605 (673)
T KOG0333|consen 598 IEDYTHRI 605 (673)
T ss_pred HHHHHHHh
Confidence 77776543
No 489
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=20.01 E-value=2.7e+02 Score=25.35 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061 110 AFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (378)
Q Consensus 110 ~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (378)
.|++.+|+.+|++|.. +|..++.+++.+..
T Consensus 106 ~iv~~~l~~~G~~Vi~-----------------LG~~vp~e~~v~~~ 135 (213)
T cd02069 106 NLVGVILSNNGYEVID-----------------LGVMVPIEKILEAA 135 (213)
T ss_pred HHHHHHHHhCCCEEEE-----------------CCCCCCHHHHHHHH
Confidence 8999999999999853 38888887766543
No 490
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=20.00 E-value=1e+02 Score=29.78 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=23.9
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHHcCCce
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~v 123 (378)
+-.+++.-|-| |||||-.||+.++...+=+|
T Consensus 49 ~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v 81 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 (325)
T ss_pred CCcEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence 44588999986 69999999999987644333
Done!