Query 017061
Match_columns 378
No_of_seqs 283 out of 2489
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 08:17:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrs_A Dihydrofolate:folylpoly 100.0 1.1E-58 3.9E-63 466.9 31.7 293 43-377 14-309 (437)
2 2vos_A Folylpolyglutamate synt 100.0 5.2E-57 1.8E-61 460.3 32.4 298 44-376 26-342 (487)
3 1jbw_A Folylpolyglutamate synt 100.0 1.5E-56 5.2E-61 450.3 33.4 302 43-377 1-305 (428)
4 1o5z_A Folylpolyglutamate synt 100.0 6.2E-57 2.1E-61 454.9 30.0 298 41-376 11-311 (442)
5 1w78_A FOLC bifunctional prote 100.0 8.3E-53 2.8E-57 422.4 31.7 283 44-377 12-294 (422)
6 1e8c_A UDP-N-acetylmuramoylala 100.0 1.2E-39 3.9E-44 333.5 18.4 233 87-377 101-346 (498)
7 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 2.2E-38 7.6E-43 326.5 22.4 238 77-377 128-382 (535)
8 1gg4_A UDP-N-acetylmuramoylala 100.0 3.9E-38 1.3E-42 318.5 12.9 231 75-376 78-320 (452)
9 2am1_A SP protein, UDP-N-acety 100.0 8.3E-38 2.8E-42 316.2 8.1 224 77-377 80-313 (454)
10 2x5o_A UDP-N-acetylmuramoylala 100.0 1.3E-34 4.4E-39 291.7 13.9 204 93-376 103-306 (439)
11 1p3d_A UDP-N-acetylmuramate--a 100.0 7E-34 2.4E-38 289.0 17.6 219 77-376 105-330 (475)
12 2f00_A UDP-N-acetylmuramate--L 100.0 2.6E-33 8.7E-38 286.0 20.6 219 77-376 106-331 (491)
13 3lk7_A UDP-N-acetylmuramoylala 100.0 1.8E-33 6.2E-38 284.3 18.4 203 94-376 112-317 (451)
14 3eag_A UDP-N-acetylmuramate:L- 100.0 2.2E-33 7.4E-38 272.3 17.4 228 77-372 94-326 (326)
15 1j6u_A UDP-N-acetylmuramate-al 100.0 3.4E-33 1.2E-37 283.5 17.9 198 93-376 113-316 (469)
16 4hv4_A UDP-N-acetylmuramate--L 100.0 5.7E-33 2E-37 283.6 18.3 206 94-376 122-334 (494)
17 3hn7_A UDP-N-acetylmuramate-L- 100.0 5.4E-32 1.8E-36 278.2 14.5 234 93-376 121-381 (524)
18 2obn_A Hypothetical protein; s 96.2 0.018 6E-07 55.5 9.3 160 93-281 151-333 (349)
19 3p32_A Probable GTPase RV1496/ 95.2 0.92 3.1E-05 43.3 17.4 47 80-126 65-113 (355)
20 3dm5_A SRP54, signal recogniti 95.0 0.99 3.4E-05 44.7 17.1 35 94-128 100-136 (443)
21 3fwy_A Light-independent proto 94.6 0.032 1.1E-06 52.9 5.2 34 93-126 47-82 (314)
22 3kl4_A SRP54, signal recogniti 94.3 0.58 2E-05 46.3 13.7 34 94-127 97-132 (433)
23 3of5_A Dethiobiotin synthetase 94.1 0.051 1.8E-06 49.0 5.2 36 92-127 2-40 (228)
24 4a0g_A Adenosylmethionine-8-am 93.9 0.3 1E-05 52.4 11.4 35 93-127 33-75 (831)
25 2g0t_A Conserved hypothetical 93.1 0.19 6.3E-06 48.4 7.3 38 93-130 168-208 (350)
26 1byi_A Dethiobiotin synthase; 92.8 0.099 3.4E-06 46.0 4.7 32 95-126 2-36 (224)
27 1xjc_A MOBB protein homolog; s 92.8 0.14 4.7E-06 44.1 5.4 35 93-127 3-39 (169)
28 3fgn_A Dethiobiotin synthetase 92.7 0.12 4E-06 47.4 5.1 36 92-127 24-62 (251)
29 3qxc_A Dethiobiotin synthetase 92.4 0.13 4.6E-06 46.7 5.1 35 93-127 20-57 (242)
30 4dzz_A Plasmid partitioning pr 92.4 0.14 4.7E-06 44.3 4.9 33 94-126 1-36 (206)
31 3bfv_A CAPA1, CAPB2, membrane 91.7 0.4 1.4E-05 44.1 7.5 37 90-126 78-117 (271)
32 3cio_A ETK, tyrosine-protein k 91.2 0.42 1.4E-05 44.6 7.1 35 92-126 102-139 (299)
33 1s1m_A CTP synthase; CTP synth 91.0 0.98 3.4E-05 45.9 10.1 34 95-128 4-41 (545)
34 3ez2_A Plasmid partition prote 90.5 0.47 1.6E-05 45.9 7.1 51 76-126 85-149 (398)
35 3q9l_A Septum site-determining 90.2 0.3 1E-05 43.8 5.0 32 95-126 3-37 (260)
36 3ea0_A ATPase, para family; al 90.0 0.26 8.9E-06 43.8 4.4 34 93-126 3-40 (245)
37 1wcv_1 SOJ, segregation protei 89.9 0.29 9.8E-06 44.3 4.6 34 93-126 5-41 (257)
38 3la6_A Tyrosine-protein kinase 89.9 0.45 1.5E-05 44.2 6.0 36 91-126 89-127 (286)
39 1g3q_A MIND ATPase, cell divis 89.8 0.34 1.2E-05 42.8 5.0 32 95-126 3-37 (237)
40 1vco_A CTP synthetase; tetrame 89.7 1.6 5.4E-05 44.4 10.3 34 95-128 13-50 (550)
41 3k9g_A PF-32 protein; ssgcid, 89.1 0.32 1.1E-05 44.1 4.4 34 92-126 25-61 (267)
42 2ph1_A Nucleotide-binding prot 88.8 0.53 1.8E-05 42.6 5.7 33 94-126 18-53 (262)
43 2oze_A ORF delta'; para, walke 88.6 0.82 2.8E-05 42.0 6.8 44 77-126 23-71 (298)
44 2afh_E Nitrogenase iron protei 88.6 0.48 1.6E-05 43.5 5.2 33 94-126 2-36 (289)
45 1cp2_A CP2, nitrogenase iron p 88.4 0.43 1.5E-05 43.1 4.7 32 95-126 2-35 (269)
46 2xj4_A MIPZ; replication, cell 88.2 0.47 1.6E-05 43.7 4.8 32 95-126 5-39 (286)
47 3c8u_A Fructokinase; YP_612366 88.1 1.3 4.5E-05 38.4 7.5 47 80-126 8-56 (208)
48 3end_A Light-independent proto 88.0 0.55 1.9E-05 43.5 5.2 35 92-126 39-75 (307)
49 1hyq_A MIND, cell division inh 87.7 0.5 1.7E-05 42.6 4.7 32 95-126 3-37 (263)
50 3ez9_A Para; DNA binding, wing 87.1 0.75 2.6E-05 44.6 5.8 52 75-126 87-152 (403)
51 3fkq_A NTRC-like two-domain pr 86.1 0.79 2.7E-05 44.0 5.3 35 92-126 141-178 (373)
52 3zq6_A Putative arsenical pump 85.6 0.98 3.3E-05 42.5 5.6 37 92-128 11-50 (324)
53 1zu4_A FTSY; GTPase, signal re 85.3 1.1 3.7E-05 42.3 5.7 34 93-126 104-139 (320)
54 3cwq_A Para family chromosome 85.2 0.83 2.8E-05 40.0 4.6 30 96-126 2-34 (209)
55 1rz3_A Hypothetical protein rb 84.7 1.7 5.9E-05 37.5 6.4 48 79-126 6-56 (201)
56 1uf9_A TT1252 protein; P-loop, 83.9 0.68 2.3E-05 39.6 3.4 33 87-123 1-35 (203)
57 3pg5_A Uncharacterized protein 83.7 0.6 2E-05 44.7 3.2 33 94-126 1-36 (361)
58 2z0h_A DTMP kinase, thymidylat 83.2 1.6 5.3E-05 37.1 5.4 30 96-125 2-33 (197)
59 1np6_A Molybdopterin-guanine d 82.7 1.7 5.7E-05 37.2 5.3 35 93-127 5-41 (174)
60 2vo1_A CTP synthase 1; pyrimid 82.4 1.6 5.6E-05 40.1 5.3 35 92-126 21-59 (295)
61 2f1r_A Molybdopterin-guanine d 82.2 1 3.5E-05 38.4 3.8 32 95-126 3-36 (171)
62 1odf_A YGR205W, hypothetical 3 82.0 1.8 6E-05 40.2 5.6 29 92-120 29-59 (290)
63 1a7j_A Phosphoribulokinase; tr 81.6 1.2 4.2E-05 41.2 4.4 36 93-128 4-41 (290)
64 2px0_A Flagellar biosynthesis 80.9 2.2 7.5E-05 39.7 5.9 35 93-127 104-141 (296)
65 3ug7_A Arsenical pump-driving 80.6 2.2 7.4E-05 40.6 5.8 36 93-128 24-62 (349)
66 2xxa_A Signal recognition part 80.5 2.2 7.6E-05 42.0 6.0 35 93-127 99-136 (433)
67 2wwf_A Thymidilate kinase, put 79.8 2.6 9E-05 36.1 5.7 34 92-125 8-43 (212)
68 1nn5_A Similar to deoxythymidy 79.6 2.6 9E-05 36.1 5.6 34 93-126 8-43 (215)
69 1vma_A Cell division protein F 79.4 2.7 9.2E-05 39.3 5.9 33 94-126 104-138 (306)
70 2woo_A ATPase GET3; tail-ancho 79.2 1.5 5.1E-05 41.4 4.1 33 95-127 19-54 (329)
71 2p67_A LAO/AO transport system 79.1 2.6 8.9E-05 39.8 5.8 46 81-126 43-90 (341)
72 2j37_W Signal recognition part 78.1 2.8 9.7E-05 42.1 6.0 35 93-127 100-136 (504)
73 1j8m_F SRP54, signal recogniti 77.8 4.8 0.00016 37.4 7.1 34 94-127 98-133 (297)
74 3igf_A ALL4481 protein; two-do 77.8 11 0.00038 36.2 9.9 33 96-128 4-38 (374)
75 2c5m_A CTP synthase; cytidine 77.8 2.3 8E-05 38.8 4.7 33 93-125 22-58 (294)
76 2pbr_A DTMP kinase, thymidylat 77.4 2.3 7.9E-05 35.8 4.5 30 96-125 2-33 (195)
77 2i3b_A HCR-ntpase, human cance 77.3 3.5 0.00012 35.6 5.6 31 96-126 3-35 (189)
78 3hjn_A DTMP kinase, thymidylat 77.1 1.7 5.9E-05 37.7 3.6 34 96-129 2-37 (197)
79 2yvu_A Probable adenylyl-sulfa 75.6 4 0.00014 34.4 5.5 34 93-126 12-47 (186)
80 3io3_A DEHA2D07832P; chaperone 75.0 2.8 9.5E-05 40.0 4.7 35 94-128 18-56 (348)
81 2pez_A Bifunctional 3'-phospho 74.4 4.1 0.00014 34.1 5.2 32 94-125 5-38 (179)
82 3iqw_A Tail-anchored protein t 74.4 2.1 7.3E-05 40.5 3.7 34 95-128 17-52 (334)
83 1nks_A Adenylate kinase; therm 74.1 3.2 0.00011 34.8 4.4 32 95-126 2-35 (194)
84 3kjh_A CO dehydrogenase/acetyl 74.0 1.2 4.1E-05 39.2 1.8 30 97-126 3-34 (254)
85 1ihu_A Arsenical pump-driving 72.6 3.6 0.00012 41.8 5.2 36 93-128 7-44 (589)
86 3tqc_A Pantothenate kinase; bi 72.3 6 0.00021 37.2 6.3 42 85-126 82-128 (321)
87 3e70_C DPA, signal recognition 72.1 7.6 0.00026 36.6 7.0 34 93-126 128-163 (328)
88 2grj_A Dephospho-COA kinase; T 71.7 3.2 0.00011 35.9 4.0 29 92-123 10-40 (192)
89 2woj_A ATPase GET3; tail-ancho 71.7 4.5 0.00015 38.5 5.3 34 95-128 18-56 (354)
90 2v3c_C SRP54, signal recogniti 71.6 3.4 0.00012 40.6 4.6 35 94-128 99-135 (432)
91 3b9q_A Chloroplast SRP recepto 70.6 6.5 0.00022 36.5 6.0 32 94-125 100-133 (302)
92 2qm8_A GTPase/ATPase; G protei 69.8 6.9 0.00024 36.9 6.2 47 81-127 42-90 (337)
93 3lv8_A DTMP kinase, thymidylat 69.1 6.4 0.00022 35.2 5.5 33 93-125 26-60 (236)
94 1zuh_A Shikimate kinase; alpha 68.8 3.7 0.00012 33.9 3.6 30 91-123 4-35 (168)
95 1gtv_A TMK, thymidylate kinase 68.5 2.2 7.5E-05 36.7 2.2 35 96-130 2-38 (214)
96 1uj2_A Uridine-cytidine kinase 68.4 3.1 0.0001 37.3 3.2 26 93-118 21-48 (252)
97 4edh_A DTMP kinase, thymidylat 68.0 6.8 0.00023 34.4 5.3 36 94-129 6-43 (213)
98 1ls1_A Signal recognition part 67.0 6.1 0.00021 36.5 5.0 33 94-126 98-132 (295)
99 3pzx_A Formate--tetrahydrofola 66.7 8.9 0.0003 38.4 6.2 48 74-126 42-95 (557)
100 1xx6_A Thymidine kinase; NESG, 66.6 9.6 0.00033 32.9 5.9 36 92-127 6-43 (191)
101 2og2_A Putative signal recogni 66.5 8.6 0.00029 36.8 6.1 32 94-125 157-190 (359)
102 3a4m_A L-seryl-tRNA(SEC) kinas 66.0 7.6 0.00026 34.9 5.4 32 94-125 4-37 (260)
103 4i1u_A Dephospho-COA kinase; s 65.7 5.6 0.00019 35.1 4.2 29 91-123 6-36 (210)
104 4tmk_A Protein (thymidylate ki 65.4 8.8 0.0003 33.7 5.5 35 95-129 4-41 (213)
105 3ec2_A DNA replication protein 65.4 8.5 0.00029 32.0 5.3 32 94-125 38-72 (180)
106 3upu_A ATP-dependent DNA helic 64.1 4.9 0.00017 39.5 3.9 48 79-129 33-82 (459)
107 1rj9_A FTSY, signal recognitio 64.0 9.5 0.00033 35.4 5.7 34 93-126 101-136 (304)
108 2plr_A DTMP kinase, probable t 63.6 7.2 0.00025 33.1 4.5 30 95-125 5-36 (213)
109 2jeo_A Uridine-cytidine kinase 63.2 5.6 0.00019 35.3 3.9 34 83-116 14-49 (245)
110 2if2_A Dephospho-COA kinase; a 62.9 5 0.00017 34.2 3.4 25 95-123 2-28 (204)
111 2yhs_A FTSY, cell division pro 61.8 8.6 0.00029 38.5 5.2 32 94-125 293-326 (503)
112 1yrb_A ATP(GTP)binding protein 61.7 9.3 0.00032 33.8 5.1 33 94-127 14-48 (262)
113 2ffh_A Protein (FFH); SRP54, s 61.4 8 0.00027 37.9 4.9 33 94-126 98-132 (425)
114 3nva_A CTP synthase; rossman f 61.0 8.7 0.0003 38.7 5.1 33 94-126 3-39 (535)
115 2kjq_A DNAA-related protein; s 60.0 22 0.00074 29.0 6.7 43 82-126 26-70 (149)
116 1g5t_A COB(I)alamin adenosyltr 58.9 8.9 0.0003 33.5 4.2 32 95-126 29-62 (196)
117 3kb2_A SPBC2 prophage-derived 58.7 7.3 0.00025 31.8 3.6 22 95-116 2-25 (173)
118 1pjq_A CYSG, siroheme synthase 58.7 5.6 0.00019 39.3 3.2 23 96-119 123-146 (457)
119 1m7g_A Adenylylsulfate kinase; 58.2 12 0.00041 32.1 5.0 33 94-126 25-60 (211)
120 4hlc_A DTMP kinase, thymidylat 58.2 5.1 0.00017 35.0 2.5 34 95-129 3-38 (205)
121 3ake_A Cytidylate kinase; CMP 58.0 7.3 0.00025 33.0 3.6 22 95-116 3-26 (208)
122 1kht_A Adenylate kinase; phosp 58.0 11 0.00037 31.3 4.6 28 95-122 4-33 (192)
123 4ehx_A Tetraacyldisaccharide 4 57.8 20 0.0007 33.4 6.8 47 79-127 18-71 (315)
124 1nij_A Hypothetical protein YJ 57.7 10 0.00036 35.2 4.8 32 93-126 3-36 (318)
125 1jwy_B Dynamin A GTPase domain 57.5 7.4 0.00025 35.6 3.7 37 77-113 7-45 (315)
126 2w0m_A SSO2452; RECA, SSPF, un 57.1 14 0.00047 31.6 5.2 32 95-126 24-57 (235)
127 2b8t_A Thymidine kinase; deoxy 56.6 14 0.00048 32.7 5.2 36 92-127 10-47 (223)
128 3ld9_A DTMP kinase, thymidylat 56.0 13 0.00044 33.0 4.8 33 93-125 20-55 (223)
129 3czq_A Putative polyphosphate 55.2 8.2 0.00028 36.1 3.5 50 77-130 73-124 (304)
130 1ihu_A Arsenical pump-driving 55.2 11 0.00036 38.4 4.7 32 95-126 327-361 (589)
131 2www_A Methylmalonic aciduria 54.9 21 0.00073 33.6 6.5 35 93-127 73-109 (349)
132 3v9p_A DTMP kinase, thymidylat 54.5 16 0.00056 32.3 5.3 37 93-129 24-66 (227)
133 3a00_A Guanylate kinase, GMP k 54.2 5.2 0.00018 33.8 1.9 24 95-118 2-27 (186)
134 1ukz_A Uridylate kinase; trans 54.1 9 0.00031 32.5 3.5 25 92-116 13-39 (203)
135 2gks_A Bifunctional SAT/APS ki 52.6 34 0.0012 34.5 7.9 48 78-125 355-405 (546)
136 1knq_A Gluconate kinase; ALFA/ 52.3 13 0.00044 30.6 4.1 25 92-116 6-32 (175)
137 3tr0_A Guanylate kinase, GMP k 52.2 9.4 0.00032 32.3 3.3 23 94-116 7-31 (205)
138 1y63_A LMAJ004144AAA protein; 51.4 13 0.00043 31.3 3.9 23 93-115 9-33 (184)
139 3uie_A Adenylyl-sulfate kinase 51.1 21 0.00071 30.3 5.3 31 93-123 24-56 (200)
140 3lw7_A Adenylate kinase relate 50.9 12 0.00042 30.2 3.7 25 95-123 2-28 (179)
141 3asz_A Uridine kinase; cytidin 50.9 11 0.00036 32.2 3.4 25 93-117 5-31 (211)
142 1jjv_A Dephospho-COA kinase; P 50.8 9.8 0.00033 32.4 3.1 25 95-123 3-29 (206)
143 3tlx_A Adenylate kinase 2; str 50.5 12 0.0004 33.3 3.7 38 79-116 14-53 (243)
144 2iyv_A Shikimate kinase, SK; t 50.1 9.8 0.00033 31.7 3.0 22 95-116 3-26 (184)
145 1ye8_A Protein THEP1, hypothet 50.1 12 0.00041 31.7 3.5 22 96-117 2-25 (178)
146 1kag_A SKI, shikimate kinase I 50.0 8.6 0.00029 31.6 2.6 22 95-116 5-28 (173)
147 1cke_A CK, MSSA, protein (cyti 49.7 12 0.0004 32.3 3.5 22 95-116 6-29 (227)
148 3syl_A Protein CBBX; photosynt 49.5 17 0.00059 32.9 4.8 27 95-121 68-96 (309)
149 2v54_A DTMP kinase, thymidylat 49.5 13 0.00045 31.3 3.7 29 95-125 5-35 (204)
150 2j9r_A Thymidine kinase; TK1, 49.1 31 0.0011 30.4 6.1 37 91-127 25-63 (214)
151 4eaq_A DTMP kinase, thymidylat 48.3 18 0.00063 31.7 4.6 32 93-125 25-58 (229)
152 1e6c_A Shikimate kinase; phosp 48.2 12 0.00042 30.6 3.2 22 95-116 3-26 (173)
153 2orw_A Thymidine kinase; TMTK, 48.1 22 0.00074 30.1 4.9 33 95-127 4-38 (184)
154 2r8r_A Sensor protein; KDPD, P 48.0 17 0.00059 32.4 4.3 26 100-125 14-39 (228)
155 2c95_A Adenylate kinase 1; tra 47.1 15 0.0005 30.7 3.6 23 94-116 9-33 (196)
156 1qf9_A UMP/CMP kinase, protein 46.6 16 0.00056 30.2 3.9 23 94-116 6-30 (194)
157 1sq5_A Pantothenate kinase; P- 45.9 14 0.0005 34.0 3.7 26 92-117 78-105 (308)
158 2f6r_A COA synthase, bifunctio 45.5 13 0.00045 33.8 3.3 27 93-123 74-102 (281)
159 1cr0_A DNA primase/helicase; R 44.8 28 0.00094 31.5 5.4 33 94-126 35-70 (296)
160 2pt5_A Shikimate kinase, SK; a 44.8 16 0.00055 29.7 3.4 21 96-116 2-24 (168)
161 1vht_A Dephospho-COA kinase; s 44.5 19 0.00064 30.9 4.0 25 95-123 5-31 (218)
162 2vli_A Antibiotic resistance p 44.4 11 0.00036 31.3 2.3 23 94-116 5-29 (183)
163 2bwj_A Adenylate kinase 5; pho 44.3 15 0.00051 30.7 3.2 22 95-116 13-36 (199)
164 1m8p_A Sulfate adenylyltransfe 44.3 49 0.0017 33.5 7.6 32 94-125 396-430 (573)
165 3vaa_A Shikimate kinase, SK; s 44.2 18 0.00061 30.7 3.8 24 93-116 24-49 (199)
166 2jaq_A Deoxyguanosine kinase; 43.4 17 0.00059 30.4 3.5 22 96-117 2-25 (205)
167 2cdn_A Adenylate kinase; phosp 43.4 22 0.00074 30.0 4.2 22 95-116 21-44 (201)
168 3lnc_A Guanylate kinase, GMP k 43.3 11 0.00037 32.9 2.3 25 93-117 26-53 (231)
169 2eyu_A Twitching motility prot 43.2 37 0.0013 30.5 5.9 35 83-119 16-52 (261)
170 3do6_A Formate--tetrahydrofola 43.1 37 0.0012 33.8 6.0 47 74-125 28-80 (543)
171 1tev_A UMP-CMP kinase; ploop, 42.4 18 0.00063 29.9 3.5 22 95-116 4-27 (196)
172 2w58_A DNAI, primosome compone 41.8 33 0.0011 28.8 5.1 32 95-126 55-88 (202)
173 2ewv_A Twitching motility prot 41.5 45 0.0015 31.7 6.5 33 93-125 135-170 (372)
174 3t61_A Gluconokinase; PSI-biol 41.4 20 0.0007 30.2 3.7 23 94-116 18-42 (202)
175 3aez_A Pantothenate kinase; tr 41.4 21 0.0007 33.2 4.0 35 92-126 88-126 (312)
176 3jvv_A Twitching mobility prot 40.8 31 0.001 32.7 5.1 32 95-126 124-158 (356)
177 3bos_A Putative DNA replicatio 40.5 65 0.0022 27.2 7.0 35 93-127 51-87 (242)
178 4eun_A Thermoresistant glucoki 40.3 22 0.00076 30.1 3.8 24 93-116 28-53 (200)
179 1g8f_A Sulfate adenylyltransfe 40.2 46 0.0016 33.3 6.5 46 75-120 375-424 (511)
180 2qt1_A Nicotinamide riboside k 39.0 18 0.00063 30.6 3.0 24 93-116 20-45 (207)
181 3rhf_A Putative polyphosphate 38.8 24 0.00081 32.7 3.8 53 77-129 57-112 (289)
182 3czp_A Putative polyphosphate 38.3 26 0.00088 35.1 4.3 50 77-130 29-81 (500)
183 3cm0_A Adenylate kinase; ATP-b 38.2 22 0.00076 29.3 3.4 22 95-116 5-28 (186)
184 1via_A Shikimate kinase; struc 38.2 20 0.00069 29.5 3.1 22 95-116 5-28 (175)
185 1dek_A Deoxynucleoside monopho 38.1 20 0.00068 32.1 3.2 26 95-123 2-29 (241)
186 2r6a_A DNAB helicase, replicat 37.9 83 0.0028 30.5 7.9 49 75-127 188-239 (454)
187 3iij_A Coilin-interacting nucl 37.8 27 0.00091 28.8 3.8 24 93-116 10-35 (180)
188 3bgw_A DNAB-like replicative h 36.6 82 0.0028 30.6 7.6 48 76-127 183-232 (444)
189 3tau_A Guanylate kinase, GMP k 36.5 26 0.00089 30.0 3.6 25 93-117 7-33 (208)
190 1qhx_A CPT, protein (chloramph 36.2 21 0.00071 29.3 2.8 23 95-117 4-28 (178)
191 1aky_A Adenylate kinase; ATP:A 36.1 28 0.00097 29.8 3.8 23 94-116 4-28 (220)
192 2rhm_A Putative kinase; P-loop 35.8 27 0.00091 28.9 3.5 22 95-116 6-29 (193)
193 1q3t_A Cytidylate kinase; nucl 35.8 30 0.001 30.1 4.0 24 93-116 15-40 (236)
194 4a1f_A DNAB helicase, replicat 35.6 94 0.0032 29.2 7.6 48 76-127 32-81 (338)
195 3lfu_A DNA helicase II; SF1 he 35.6 25 0.00087 35.6 3.9 28 92-120 23-51 (647)
196 2j41_A Guanylate kinase; GMP, 35.1 20 0.0007 30.1 2.7 22 95-116 7-30 (207)
197 1x6v_B Bifunctional 3'-phospho 35.0 45 0.0015 34.3 5.6 41 85-125 42-85 (630)
198 3bh0_A DNAB-like replicative h 34.8 90 0.0031 28.6 7.3 48 76-127 54-103 (315)
199 3n70_A Transport activator; si 33.7 18 0.00062 29.0 2.0 43 77-122 10-54 (145)
200 2qgz_A Helicase loader, putati 33.5 78 0.0027 29.0 6.6 36 94-129 152-190 (308)
201 3trf_A Shikimate kinase, SK; a 33.3 33 0.0011 28.2 3.7 23 94-116 5-29 (185)
202 1znw_A Guanylate kinase, GMP k 33.2 27 0.00092 29.7 3.2 25 93-117 19-45 (207)
203 2jtq_A Phage shock protein E; 32.7 1.2E+02 0.0041 21.4 6.3 44 75-122 24-67 (85)
204 1jbk_A CLPB protein; beta barr 32.3 1.2E+02 0.0042 24.1 7.1 39 78-118 29-69 (195)
205 2aka_B Dynamin-1; fusion prote 32.0 39 0.0013 30.2 4.2 35 78-112 9-46 (299)
206 2wsm_A Hydrogenase expression/ 31.1 41 0.0014 28.5 4.0 33 93-126 29-63 (221)
207 1lvg_A Guanylate kinase, GMP k 31.1 31 0.0011 29.3 3.1 23 95-117 5-29 (198)
208 1l8q_A Chromosomal replication 30.7 75 0.0026 28.9 6.0 42 84-125 27-70 (324)
209 2bbw_A Adenylate kinase 4, AK4 30.6 39 0.0013 29.6 3.8 39 75-116 11-51 (246)
210 2p5t_B PEZT; postsegregational 30.4 56 0.0019 28.8 4.9 26 92-117 30-57 (253)
211 3fb4_A Adenylate kinase; psych 29.9 37 0.0013 28.8 3.5 21 96-116 2-24 (216)
212 3e1s_A Exodeoxyribonuclease V, 29.9 54 0.0019 33.1 5.2 32 95-126 205-238 (574)
213 2e2z_A TIM15; protein import, 29.7 33 0.0011 26.4 2.7 36 227-264 51-90 (100)
214 4e22_A Cytidylate kinase; P-lo 29.3 36 0.0012 30.1 3.4 24 93-116 26-51 (252)
215 3czp_A Putative polyphosphate 28.2 19 0.00065 36.0 1.4 36 95-130 301-338 (500)
216 1ly1_A Polynucleotide kinase; 28.2 37 0.0013 27.6 3.1 20 95-114 3-24 (181)
217 2orv_A Thymidine kinase; TP4A 27.3 65 0.0022 28.7 4.6 34 94-127 19-54 (234)
218 4fcw_A Chaperone protein CLPB; 27.2 98 0.0034 27.6 6.1 47 77-123 26-78 (311)
219 1e4v_A Adenylate kinase; trans 26.7 50 0.0017 28.1 3.8 25 96-123 2-28 (214)
220 1htw_A HI0065; nucleotide-bind 26.7 47 0.0016 27.3 3.4 24 93-116 32-57 (158)
221 1ccw_A Protein (glutamate muta 26.7 96 0.0033 24.7 5.3 38 101-155 12-49 (137)
222 3e2i_A Thymidine kinase; Zn-bi 26.4 64 0.0022 28.5 4.3 37 92-128 26-64 (219)
223 3nwj_A ATSK2; P loop, shikimat 26.0 41 0.0014 30.1 3.1 23 94-116 48-72 (250)
224 3kta_A Chromosome segregation 26.0 37 0.0013 27.9 2.7 22 96-117 28-51 (182)
225 1zak_A Adenylate kinase; ATP:A 25.9 45 0.0015 28.5 3.3 23 95-117 6-30 (222)
226 2yxb_A Coenzyme B12-dependent 25.7 1.3E+02 0.0044 24.8 6.0 37 101-154 27-63 (161)
227 1zd8_A GTP:AMP phosphotransfer 25.1 38 0.0013 29.2 2.7 23 94-116 7-31 (227)
228 4e5v_A Putative THUA-like prot 24.9 3E+02 0.01 24.8 8.9 61 92-153 3-77 (281)
229 1ak2_A Adenylate kinase isoenz 24.8 60 0.002 28.1 4.0 22 95-116 17-40 (233)
230 3hbx_A GAD 1, glutamate decarb 24.7 3E+02 0.01 26.7 9.5 89 79-168 353-446 (502)
231 1p9r_A General secretion pathw 24.6 75 0.0026 30.7 4.9 37 93-129 166-204 (418)
232 3be4_A Adenylate kinase; malar 24.6 47 0.0016 28.4 3.2 22 95-116 6-29 (217)
233 3co5_A Putative two-component 24.4 40 0.0014 26.8 2.5 36 77-115 13-50 (143)
234 3dl0_A Adenylate kinase; phosp 24.4 42 0.0014 28.5 2.8 21 96-116 2-24 (216)
235 2p65_A Hypothetical protein PF 24.3 1.7E+02 0.0057 23.2 6.5 38 79-118 30-69 (187)
236 3flh_A Uncharacterized protein 24.3 1.1E+02 0.0037 23.6 5.1 47 75-125 56-102 (124)
237 2zr9_A Protein RECA, recombina 24.3 90 0.0031 29.2 5.3 51 77-129 46-98 (349)
238 2xb4_A Adenylate kinase; ATP-b 23.9 54 0.0018 28.2 3.4 21 96-116 2-24 (223)
239 3hdt_A Putative kinase; struct 23.4 54 0.0019 28.7 3.4 26 94-122 14-41 (223)
240 3h1t_A Type I site-specific re 23.4 71 0.0024 31.9 4.6 44 76-120 183-226 (590)
241 3ixl_A Amdase, arylmalonate de 23.1 3.8E+02 0.013 23.4 9.0 46 78-129 106-151 (240)
242 2bdt_A BH3686; alpha-beta prot 23.0 52 0.0018 27.2 3.1 20 95-114 3-24 (189)
243 2vp4_A Deoxynucleoside kinase; 22.8 48 0.0017 28.7 2.9 24 92-115 18-43 (230)
244 2h92_A Cytidylate kinase; ross 22.8 46 0.0016 28.3 2.7 22 95-116 4-27 (219)
245 3bfj_A 1,3-propanediol oxidore 22.5 2.3E+02 0.0077 26.7 7.8 46 77-126 21-69 (387)
246 1u94_A RECA protein, recombina 22.3 1.1E+02 0.0039 28.7 5.6 35 95-129 64-100 (356)
247 1zp6_A Hypothetical protein AT 21.9 55 0.0019 26.9 3.0 22 94-115 9-32 (191)
248 2dr3_A UPF0273 protein PH0284; 21.6 1.1E+02 0.0038 26.0 5.1 33 94-126 23-57 (247)
249 1nlf_A Regulatory protein REPA 21.4 95 0.0032 27.6 4.7 26 93-118 29-56 (279)
250 3fni_A Putative diflavin flavo 21.2 2E+02 0.007 23.2 6.4 68 81-161 74-142 (159)
251 2x2e_A Dynamin-1; nitration, h 21.1 63 0.0022 30.1 3.5 35 78-112 14-51 (353)
252 2qz4_A Paraplegin; AAA+, SPG7, 20.9 1.3E+02 0.0045 25.8 5.5 22 95-116 40-63 (262)
253 1tue_A Replication protein E1; 20.9 1.2E+02 0.0041 26.6 4.9 37 77-117 45-83 (212)
254 2ocp_A DGK, deoxyguanosine kin 20.9 50 0.0017 28.7 2.6 23 95-117 3-27 (241)
255 2ze6_A Isopentenyl transferase 20.8 68 0.0023 28.3 3.5 22 95-116 2-25 (253)
256 2chg_A Replication factor C sm 20.8 1.1E+02 0.0037 25.1 4.7 27 96-122 40-68 (226)
257 3r20_A Cytidylate kinase; stru 20.7 73 0.0025 28.2 3.7 22 95-116 10-33 (233)
258 2cvh_A DNA repair and recombin 20.4 1.2E+02 0.004 25.3 4.9 31 94-127 20-52 (220)
259 3do6_A Formate--tetrahydrofola 20.2 2.3E+02 0.0078 28.2 7.2 87 193-281 281-394 (543)
260 3ch4_B Pmkase, phosphomevalona 20.1 43 0.0015 29.2 1.9 24 94-117 11-36 (202)
No 1
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=1.1e-58 Score=466.91 Aligned_cols=293 Identities=27% Similarity=0.316 Sum_probs=230.5
Q ss_pred ccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCc
Q 017061 43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~ 122 (378)
.+|++|++||++++.+ |+ +++|+||+++|++||+|+.++|+||||||||||||++||++||+++||+
T Consensus 14 ~~~~~~l~~l~~~~~~---~~----------~~gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~ 80 (437)
T 3nrs_A 14 SPLAAWLCYLEHLHSQ---PI----------ELGLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLR 80 (437)
T ss_dssp SCHHHHHHHHHTC--------------------CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHhcCCC---CC----------CCCHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCc
Confidence 4699999999999865 33 3789999999999999999999999999999999999999999999999
Q ss_pred eEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCC
Q 017061 123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGL 202 (378)
Q Consensus 123 vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~ 202 (378)
||+|||||+.+|||||++| |.+|+++++.++++++++.. +..++|+||+.|++||.+|.+.++|++|+|+|+
T Consensus 81 vg~~tSphl~~~neri~i~--g~~i~~~~~~~~~~~v~~~~------~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGl 152 (437)
T 3nrs_A 81 VGVYSSPHLLRYTERVRIQ--GQELSEAEHSHSFAQIEAGR------GDISLTYFEFGTLSALQLFKQAKLDVVILEVGL 152 (437)
T ss_dssp EEEECCCCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHH------TTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred EEEECCCCcCCcceEEEEC--CEECCHHHHHHHHHHHHHhh------cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 9999999999999999999 99999999999999887653 356899999999999999999999999999999
Q ss_pred CCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEe
Q 017061 203 GGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSA 282 (378)
Q Consensus 203 gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~ 282 (378)
||++|++|+++ |+++|||||++||+|+||+|+|+|+++|++||++++++|+| .|++. .++.+.+++.+++++++
T Consensus 153 ggrld~tnii~---p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~-~d~~~--~~~~~~a~~~~~~~~~~ 226 (437)
T 3nrs_A 153 GGRLDATNIVD---SDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVG-EPDMP--QSIADVAAELGAQLYRR 226 (437)
T ss_dssp SSTTSGGGGSC---CSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEEC-CSSCC--HHHHHHHHHHTCEEEEB
T ss_pred CCccccccccC---CCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEEC-CccHH--HHHHHHHHHcCCcEEEe
Confidence 99999999986 68999999999999999999999999999999999999999 45543 35677788889999987
Q ss_pred cccccchhccc-cccCCCCCCcccceeEeecccccccccccccccCCC--chhHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 017061 283 YDAGIRATING-LSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMI--GNHQLHNALTATCAALCLRDQGGYLMLSYF 359 (378)
Q Consensus 283 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~--G~hq~~NalaAlaaa~~L~~~~~gi~~~~I 359 (378)
+.. ....... .............+.+.. .....+.++++ |.||+.||++|+++ . +++++.+.|
T Consensus 227 g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~l~~~~~~Na~~Alaa~~~-~-----~lgi~~~~i 292 (437)
T 3nrs_A 227 DVA-WKFSQQEPFDQQEPVDQQINGWHWQC-------GERQLTGLPVPNVPLANAATALAVLHY-S-----ELPLSDEAI 292 (437)
T ss_dssp TTT-EEEEC--------------CCEEEEE-------TTEEEEEECCCSSCHHHHHHHHHHHHH-H-----TCCCCHHHH
T ss_pred ccc-ceeeecccccccccccccCceEEEec-------CCcceeccCCcchhHHHHHHHHHHHHH-h-----CCCCCHHHH
Confidence 531 1100000 000000000000111110 00112345555 77777777777665 2 349999999
Q ss_pred HHHHhcCCCCceeEEEec
Q 017061 360 LSGFREEHFWRAEIFLMN 377 (378)
Q Consensus 360 ~~gL~~~~~~pgR~~~~~ 377 (378)
++||+++. ||||++.+.
T Consensus 293 ~~gL~~~~-~pGR~e~v~ 309 (437)
T 3nrs_A 293 RQGLQAAS-LPGRFQVVS 309 (437)
T ss_dssp HHHHHHCC-CTTSSEEEE
T ss_pred HHHHHhCC-CCCceEEEe
Confidence 99999985 999998753
No 2
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=5.2e-57 Score=460.31 Aligned_cols=298 Identities=31% Similarity=0.419 Sum_probs=245.2
Q ss_pred cHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCce
Q 017061 44 ELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~v 123 (378)
+|++|++||+.++.. .++ +++|+||+.+++.||+|+.++++||||||||||||++||++||+++|++|
T Consensus 26 ~~~~~~~~l~~~~~~--~~~----------~~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~v 93 (487)
T 2vos_A 26 SLLQVEHLLDQRWPE--TRI----------DPSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRT 93 (487)
T ss_dssp HHHHHHHHHTTTC-----CC----------CTTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhhCcc--cCC----------CCCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCe
Confidence 578888888775421 123 37899999999999999999999999999999999999999999999999
Q ss_pred EeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh-------cCCCcCHHHHHHHHHHHHHHhcCCCEE
Q 017061 124 GCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL-------ENGCITHFEVLTAMAFALFAQNHVDIA 196 (378)
Q Consensus 124 g~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~-------~~~~~t~fE~~t~~a~~~f~~~~~d~~ 196 (378)
|+|||||+.+|+|||++| |.+++++.+.++++++++..+.+... ...++|+||++|++||.+|.+.++|++
T Consensus 94 G~~tSp~l~~~~eri~i~--G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~ 171 (487)
T 2vos_A 94 GRTTSPHLQSPVERISID--GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVA 171 (487)
T ss_dssp EEECSSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEE
T ss_pred EEECCCCcCcccceEEEC--CEECCHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 999999999999999999 99999999999999999887765431 244699999999999999999999999
Q ss_pred EEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccc------cCCCeEEEcCCCChhHHHHHHH
Q 017061 197 VIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII------KYGRPLVLGGPFLPHIEHILRD 270 (378)
Q Consensus 197 VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Ii------k~~~~~V~~~~d~~~~~~vl~~ 270 (378)
|+|+|+||++|.+|+++ |+++|||||++||+++||+|+|+|+++|++|| ++++++|+| .|+|.+..++.+
T Consensus 172 VlEvg~gg~~d~tn~i~---p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~-~dd~~~~~~~~~ 247 (487)
T 2vos_A 172 VVEVGMGGRWDATNVIN---APVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIG-RQVPKVMEVLLA 247 (487)
T ss_dssp EEECSSSSTTSTTCSSC---CSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEEC-CCCHHHHHHHHH
T ss_pred EEEcCCCCccccccccC---CCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEe-CCCHHHHHHHHH
Confidence 99999999999999885 68999999999999999989999999999999 788999999 678888788877
Q ss_pred HHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc---ccccccccCCCchhHHHHHHHHHHHHHH
Q 017061 271 EASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS---IELLDVKLCMIGNHQLHNALTATCAALC 346 (378)
Q Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~i~l~l~G~hq~~NalaAlaaa~~ 346 (378)
.+.+.++++++++. ++ ......+...+ .+.+. .....+.+|++|.||++|+++|++++..
T Consensus 248 ~a~~~~~~~~~~g~-d~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~ 311 (487)
T 2vos_A 248 ESVRADASVAREDS-EF---------------AVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEA 311 (487)
T ss_dssp HHHHTTCEEEEBTT-TB---------------EEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEecC-ce---------------EEEeeccccCCceEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHH
Confidence 77777788887642 11 00000000000 01111 1112578999999999999999999998
Q ss_pred HHhcC--CCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 347 LRDQG--GYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 347 L~~~~--~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
|...+ ++++.+.|++||++|. ||||++.+
T Consensus 312 l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v 342 (487)
T 2vos_A 312 FFGAGAQRQLDGDAVRAGFAAVT-SPGRLERM 342 (487)
T ss_dssp HTTC----CCCHHHHHHHHHTCC-CTTSSEEE
T ss_pred HhhccccCCCCHHHHHHHHHhCc-CCCceEEE
Confidence 73221 3799999999999985 99998765
No 3
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=1.5e-56 Score=450.29 Aligned_cols=302 Identities=28% Similarity=0.438 Sum_probs=250.6
Q ss_pred ccHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCc
Q 017061 43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~ 122 (378)
++|++|++||++++.+ |+ +++|+|++++|++||+|+.+.++||||||||||||++||+++|+++|++
T Consensus 1 ~~~~~~~~~l~~~~~~---~~----------~~~l~~~~~~l~~lg~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~ 67 (428)
T 1jbw_A 1 MNYTETVAYIHSFPRL---AK----------TGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLT 67 (428)
T ss_dssp CCHHHHHHHHTTCCCC---CC----------CSSCHHHHHHHHHTTCGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHhhccc---CC----------CCCHHHHHHHHHHcCCchhcCcEEEEECCCChHHHHHHHHHHHHHCCCC
Confidence 3589999999987754 33 3789999999999999999999999999999999999999999999999
Q ss_pred eEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh-cCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeC
Q 017061 123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL-ENGCITHFEVLTAMAFALFAQNHVDIAVIEAG 201 (378)
Q Consensus 123 vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~-~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg 201 (378)
||+|+|||+.+|+|||++| |.+++++++.++++++.+..+++... +..++|+||++|++||.+|.+.++|++|+|+|
T Consensus 68 vg~~~sp~l~~~~eri~i~--g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg 145 (428)
T 1jbw_A 68 VGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVG 145 (428)
T ss_dssp EEEECSSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred EEEEeCCccCccceEEEEC--CEECCHHHHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence 9999999999999999999 99999999999999998877665421 23579999999999999999999999999999
Q ss_pred CCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEE
Q 017061 202 LGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVS 281 (378)
Q Consensus 202 ~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~ 281 (378)
++|++|.+++++ |+++|||||++||+|+||+|+|+|+++|++||++++++|+| .|+|.+.+++.+.+++.++++++
T Consensus 146 ~~g~~d~t~~~~---p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~-~dd~~~~~~~~~~a~~~~~~~~~ 221 (428)
T 1jbw_A 146 IGGDTDSTNVIT---PVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTG-NLVPDAAAVVAAKVATTGSQWLR 221 (428)
T ss_dssp SSSTTSTTCSCC---CSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTCCEEEC-CCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCccccccccCC---CCEEEECcCcHhhhhhhCCCHHHHHHHHhccccCCceEEEe-CCCHHHHHHHHHHHHHcCCcEEE
Confidence 999999999884 68999999999999999989999999999999999999999 57888888887777777788888
Q ss_pred ecccccchhccccccCCCCCCcccceeEeeccccccccccc-ccccCCCchhHHHHHHHHHHHHHHH-HhcCCCCCHHHH
Q 017061 282 AYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELL-DVKLCMIGNHQLHNALTATCAALCL-RDQGGYLMLSYF 359 (378)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~l~l~G~hq~~NalaAlaaa~~L-~~~~~gi~~~~I 359 (378)
++. +...... .... .. ..+.+.. ..... .+.+|++|.||++|+++|++++..| ...++.++.+.|
T Consensus 222 ~g~-~~~~~~~--~~~~--~~--~~~~~~~------~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~~~~i~~~~i 288 (428)
T 1jbw_A 222 FDR-DFSVPKA--KLHG--WG--QRFTYED------QDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNI 288 (428)
T ss_dssp BTT-TEEEEEE--EECS--SS--EEEEEEE------TTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred eCc-cceeecc--cccc--CC--ceEEEec------CCccccccccCCCChhHHHHHHHHHHHHHHHhhccCCCCCHHHH
Confidence 752 1100000 0000 00 0011110 01112 5789999999999999999999988 333456999999
Q ss_pred HHHHhcCCCCceeEEEec
Q 017061 360 LSGFREEHFWRAEIFLMN 377 (378)
Q Consensus 360 ~~gL~~~~~~pgR~~~~~ 377 (378)
++||+++. ||||++.+.
T Consensus 289 ~~~L~~~~-~~gR~e~~~ 305 (428)
T 1jbw_A 289 RQGLAASH-WPARLEKIS 305 (428)
T ss_dssp HHHHHTCC-CTTSSEEEE
T ss_pred HHHHHhCc-CCCceEEec
Confidence 99999996 999998753
No 4
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=6.2e-57 Score=454.89 Aligned_cols=298 Identities=34% Similarity=0.477 Sum_probs=243.0
Q ss_pred CCccHHHHHHHHHhcchhhhcC-CCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHc
Q 017061 41 EEPELMNFMNYLDSLKNFEKSG-VPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAE 119 (378)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~~~g-~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~ 119 (378)
..+.|++|++||++++.+ | + +++|+|++++|+.||+|+.+.++||||||||||||++||+++|+++
T Consensus 11 ~~~~~~~~~~~l~~~~~~---~~~----------~~gl~~~~~~l~~lg~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~ 77 (442)
T 1o5z_A 11 HHMAYLEVLRYLYHKRPM---GKV----------KPGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQ 77 (442)
T ss_dssp CHHHHHHHHHHHHTC--------C----------CCCSHHHHHHHHHTTCGGGSSEEEEEECSSSHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhCcC---CCC----------CCCHHHHHHHHHHcCCchhcCCEEEEECCcCHHHHHHHHHHHHHHC
Confidence 356789999999987754 3 3 3689999999999999999999999999999999999999999999
Q ss_pred CCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEe
Q 017061 120 GYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIE 199 (378)
Q Consensus 120 G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlE 199 (378)
|++|++|+|||+.+|||||++| |.++++..+.++++++++..+.+...+..++|+||++|++||.+|.+.++|++|+|
T Consensus 78 G~~vg~~~Sphl~~~neri~in--G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlE 155 (442)
T 1o5z_A 78 GYRVGSYYSPHLSTFRERIRLN--EEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLE 155 (442)
T ss_dssp TCCEEEECCSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCEEEECCCCcCccceeEEEC--CEECCHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999999999999 99999999999999999887776554557899999999999999999999999999
Q ss_pred eCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeE
Q 017061 200 AGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQV 279 (378)
Q Consensus 200 vg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~ 279 (378)
+|++|++|.+++++ |+++|||||++||+|+||+|+|+|+++|++|+++++++|+| .|+|.+..++.+.|.+.++++
T Consensus 156 vg~~g~~d~t~~~~---P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~~~~~~V~~-~dd~~~~~~~~~~a~~~~~~~ 231 (442)
T 1o5z_A 156 VGLGGRLDATNVVF---PLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTG-ERKREALKVMEDVARKKSSRM 231 (442)
T ss_dssp CSSSSTTCGGGGCC---CSCEEECCCCC-------CCHHHHHHHHGGGCCTTCCEEEC-CCCHHHHHHHHHHHHHHTCCE
T ss_pred cCCCCCccccccCC---CCEEEECCccHhhhhhhCcCHHHHHHHHHhhccCCccEEEc-CCChHHHHHHHHHHHHcCCcE
Confidence 99999999999875 68999999999999999989999999999999999999999 578888888877777778888
Q ss_pred EEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhHHHHHHHHHHHHH--HHHhcCCCCCHH
Q 017061 280 VSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAAL--CLRDQGGYLMLS 357 (378)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~--~L~~~~~gi~~~ 357 (378)
++++. ++.... ....... ..+.+.. ......+.+|++|.||++|+++|++++. .| +++.+
T Consensus 232 ~~~~~-d~~~~~--~~~~~~~----~~~~~~~------~~~~~~~~l~l~G~hn~~NalaAia~~~~~~l-----gi~~~ 293 (442)
T 1o5z_A 232 YVIDK-DFSVKV--KSLKLHE----NRFDYCG------ENTFEDLVLTMNGPHQIENAGVALKTLEATGL-----PLSEK 293 (442)
T ss_dssp EEBTT-TBEEEE--EECCTTC----EEEEEES------SSEEEEEEESSCSTHHHHHHHHHHHHHHHHCC-----CCCHH
T ss_pred EEeCc-ceeeec--cccccCC----ceEEEec------cccccccccCCCcHhHHHHHHHHHHHHHHhhc-----CCCHH
Confidence 88753 111000 0000000 0111110 0011257889999999999999999999 88 99999
Q ss_pred HHHHHHhcCCCCceeEEEe
Q 017061 358 YFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 358 ~I~~gL~~~~~~pgR~~~~ 376 (378)
.|++||++|. ||||++.+
T Consensus 294 ~i~~~L~~~~-~~gR~e~~ 311 (442)
T 1o5z_A 294 AIREGLKNAK-NLGRFEIL 311 (442)
T ss_dssp HHHHHHHHCC-CTTSSEEE
T ss_pred HHHHHHHhCC-CCCceEEE
Confidence 9999999995 99999875
No 5
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=8.3e-53 Score=422.37 Aligned_cols=283 Identities=29% Similarity=0.371 Sum_probs=234.8
Q ss_pred cHHHHHHHHHhcchhhhcCCCCCCCCCCCCCCChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCce
Q 017061 44 ELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~v 123 (378)
++++|++|+++++.+ ++ +++|+|++++|+.||+|+.+.++||||||||||||++||+++|+++|++|
T Consensus 12 ~~~~~~~~~~~~~~~---~~----------~~gl~r~~~~l~~lg~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~ 78 (422)
T 1w78_A 12 PLASWLSYLENLHSK---TI----------DLGLERVSLVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKV 78 (422)
T ss_dssp CHHHHHHHHTTSSSS---SC----------CCCSHHHHHHHHHHTCSSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCCE
T ss_pred hHHHHHHHHHhcccC---CC----------CCCHHHHHHHHHHcCCcccCCcEEEEeCCcChHHHHHHHHHHHHHCCCCE
Confidence 588999998877543 22 37899999999999999999999999999999999999999999999999
Q ss_pred EeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCC
Q 017061 124 GCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLG 203 (378)
Q Consensus 124 g~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~g 203 (378)
|+|+|||+.+|||||++| |.+++++.+.++++.+.+.. ++.++|+||++|++||.+|.+.++|++|+|+|++
T Consensus 79 g~~~s~~l~~~neri~i~--g~~i~~~~~~~~~~~v~~~~------~~~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~ 150 (422)
T 1w78_A 79 GVYSSPHLVRYTERVRVQ--GQELPESAHTASFAEIESAR------GDISLTYFEYGTLSALWLFKQAQLDVVILEVGLG 150 (422)
T ss_dssp EEECCSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHT------TTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred EEECCCCcCcCceEEEEC--CEECCHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 999999999999999999 99999999999998776542 3457899999999999999999999999999999
Q ss_pred CCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEec
Q 017061 204 GARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAY 283 (378)
Q Consensus 204 g~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~ 283 (378)
+++|.+++++ |+++|||||++||+|+||+|+|+|+++|++|+++++++|+| .|++. ..+.+.+.+.++++++++
T Consensus 151 ~~~d~t~~~~---p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~-~d~~~--~~~~~~a~~~~~~~~~~g 224 (422)
T 1w78_A 151 GRLDATNIVD---ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVG-EPEMP--STIADVAQEKGALLQRRG 224 (422)
T ss_dssp STTSGGGGSC---CSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTSEEEEC-CSSCC--HHHHHHHHHHTCEEEEBT
T ss_pred cccccccCCC---CCEEEECCcChhhhhhhCCCHHHHHHHHHhhccCCCcEEEc-CccHH--HHHHHHHHHcCCceEEeC
Confidence 9999999875 68999999999999999989999999999999999999998 45553 245556666678888875
Q ss_pred ccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 017061 284 DAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGF 363 (378)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL 363 (378)
. +.... . .+. .+.+.. ..... +.++++ .||++|+++|++++..+ +++++.+.|++||
T Consensus 225 ~-~~~~~-----~-~~~-----~~~~~~------~~~~~-~~l~l~-~hn~~Na~aAia~~~~~---~~gi~~~~i~~~L 281 (422)
T 1w78_A 225 V-EWNYS-----V-TDH-----DWAFSD------AHGTL-ENLPLP-LVPQPNAATALAALRAS---GLEVSENAIRDGI 281 (422)
T ss_dssp T-TBEEE-----E-CSS-----CEEEEE------TTEEE-EEECCC-SSCHHHHHHHHHHHHHH---TCCCCHHHHHHHH
T ss_pred c-ceeee-----c-cCc-----eEEEec------CCccc-ccCCch-HHHHHHHHHHHHHHHHh---CCCCCHHHHHHHH
Confidence 2 11000 0 000 111110 00111 567888 99999999999999886 4589999999999
Q ss_pred hcCCCCceeEEEec
Q 017061 364 REEHFWRAEIFLMN 377 (378)
Q Consensus 364 ~~~~~~pgR~~~~~ 377 (378)
++|. ||||++.+.
T Consensus 282 ~~~~-~~gR~e~~~ 294 (422)
T 1w78_A 282 ASAI-LPGRFQIVS 294 (422)
T ss_dssp HHCC-CTTSSEEEE
T ss_pred HhCC-CCceEEEEe
Confidence 9996 999998753
No 6
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.2e-39 Score=333.45 Aligned_cols=233 Identities=14% Similarity=0.091 Sum_probs=173.7
Q ss_pred hCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 017061 87 LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA 166 (378)
Q Consensus 87 lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~ 166 (378)
+++|+.++++||||||||||||+.||++||+++|++|++++|++. .++ +..++
T Consensus 101 ~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~-------~i~--~~~~~------------------ 153 (498)
T 1e8c_A 101 YHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGN-------GLL--GKVIP------------------ 153 (498)
T ss_dssp TTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEE-------EET--TCCBC------------------
T ss_pred hCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCc-------ccC--Ceeee------------------
Confidence 688999999999999999999999999999999999999999873 445 43332
Q ss_pred HhhcCCCcCHHHHHHHHH-HHHHHhcCCCEEEEeeCC----CCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHH
Q 017061 167 IRLENGCITHFEVLTAMA-FALFAQNHVDIAVIEAGL----GGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIA 241 (378)
Q Consensus 167 ~~~~~~~~t~fE~~t~~a-~~~f~~~~~d~~VlEvg~----gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia 241 (378)
..+|+||..++++ |.+|.+.++|++|+|+|+ ++++|. .+|+++|||||++||+|+|| |+|+|+
T Consensus 154 -----~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~------~~p~vaViTNI~~DHld~~g-t~e~ia 221 (498)
T 1e8c_A 154 -----TENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAA------LKFAASVFTNLSRDHLDYHG-DMEHYE 221 (498)
T ss_dssp -----CSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTT------CBCSEEEECCCCSCCHHHHS-SHHHHH
T ss_pred -----cCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccc------cCCCEEEEeCCChhhhhccC-CHHHHH
Confidence 1357777777774 667889999999999996 445443 34789999999999999998 999999
Q ss_pred HHHhccccC--CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCC---CCcccceeEeecc-cc
Q 017061 242 MAKSGIIKY--GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDR---PCQSCDIIVQAER-DL 315 (378)
Q Consensus 242 ~~Ka~Iik~--~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~ 315 (378)
++|++||+. ++++|+| .|||....++.. +...++++++|+.. ... ++...++.....+ .+
T Consensus 222 ~aK~~i~~~~~~~~~V~n-~dd~~~~~~~~~-~~~~~~~v~~~g~~------------~~~~~~d~~~~~~~~~~~g~~f 287 (498)
T 1e8c_A 222 AAKWLLYSEHHCGQAIIN-ADDEVGRRWLAK-LPDAVAVSMEDHIN------------PNCHGRWLKATEVNYHDSGATI 287 (498)
T ss_dssp HHHHHHHHTSBCCEEEEE-TTSHHHHHHHTT-CTTCEEEESSSCCC------------TTTCSEEEEEEEEEECSSCEEE
T ss_pred HHHHHHhccCCCCeEEEE-CCCHHHHHHHHh-hhccCCcEEEEecC------------CCCCcCCEEEEEEEEcCCceEE
Confidence 999999975 6789999 578866544322 11112255555411 001 1211111111111 11
Q ss_pred ccc--ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEec
Q 017061 316 KLS--IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN 377 (378)
Q Consensus 316 ~~~--~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~ 377 (378)
.+. .+...+.+|++|.||++|+++|++++..| |++.+.|++||++|.+|||||+.+.
T Consensus 288 ~~~~~~~~~~~~l~l~G~hnv~NalaAia~~~~l-----Gi~~~~i~~~L~~~~~~~gR~e~v~ 346 (498)
T 1e8c_A 288 RFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL-----GYPLADLLKTAARLQPVCGRMEVFT 346 (498)
T ss_dssp EEEETTCCEEEEECSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHGGGCCCCTTSSEEEC
T ss_pred EEEECCceEEEEecCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEEE
Confidence 111 11235789999999999999999999999 9999999999999988999998763
No 7
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=2.2e-38 Score=326.48 Aligned_cols=238 Identities=19% Similarity=0.222 Sum_probs=179.1
Q ss_pred hHHHHHHHHH-hCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061 77 LGRMNRLMDR-LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (378)
Q Consensus 77 L~r~~~ll~~-lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (378)
+..+..+.+. +++|+.++++||||||||||||+.||++||+++|+++++++|. ++.+| |..++.
T Consensus 128 ~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~-------~~~i~--~~~~~~------ 192 (535)
T 2wtz_A 128 RGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI-------GIRVG--GADLPS------ 192 (535)
T ss_dssp HHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSS-------CEEET--TEEECC------
T ss_pred HHHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCc-------ceeEC--CEeccc------
Confidence 3445555443 6899889999999999999999999999999999999999873 45677 666652
Q ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHH-HHHhcCCCEEEEeeCC----CCCcccccccccCCCcEEEEccCChhhH
Q 017061 156 FHKIKGVLDEAIRLENGCITHFEVLTAMAFA-LFAQNHVDIAVIEAGL----GGARDATNIISSSGLAASVITTIGEEHT 230 (378)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~-~f~~~~~d~~VlEvg~----gg~~D~t~~~~~~~p~vaVITNI~~DHl 230 (378)
.+++||..++.+++ .|.+.++|++|+|+|+ ++++| ..+|+++|||||++||+
T Consensus 193 -----------------~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~------~~~p~vaViTNI~~DHl 249 (535)
T 2wtz_A 193 -----------------ALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVD------GTRFAVGAFTNLSRDHL 249 (535)
T ss_dssp -----------------SSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTT------TCCEEEEEECCCCSCCT
T ss_pred -----------------CCccCcHHHHHHHHHHHHhCCCCEEEEECCCccccccccc------cCCcCEEEEcCCChHHh
Confidence 46778888888764 6778999999999996 34433 34589999999999999
Q ss_pred hhcCCCHHHHHHHHhccccC-----CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCC-CCcc
Q 017061 231 AALGGSLETIAMAKSGIIKY-----GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDR-PCQS 304 (378)
Q Consensus 231 d~lG~tle~ia~~Ka~Iik~-----~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 304 (378)
|+|| |+|+|+++|++||++ ++.+|+| .|||....++.. + . ++++|+... .. ++..
T Consensus 250 d~~g-s~e~ia~aK~~i~~~~~~~~~g~~Vln-~Dd~~~~~~~~~-~---~-~v~~~g~~~------------~~~d~~~ 310 (535)
T 2wtz_A 250 DFHP-SMADYFEAKASLFDPDSALRARTAVVC-IDDDAGRAMAAR-A---A-DAITVSAAD------------RPAHWRA 310 (535)
T ss_dssp TTSS-SHHHHHHHHHTTTCTTSTTCCSEEEEE-CSSHHHHHHHHH-H---S-SCEEEESSS------------SCCSEEE
T ss_pred hhcC-CHHHHHHHHHHHhccccccCCCeEEEE-CCCHHHHHHHHh-c---C-CEEEEecCC------------CcCcEEE
Confidence 9998 999999999999984 4578999 578876555432 1 2 566664211 11 2222
Q ss_pred cceeEe-ecc-cccccc--cc-cccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEec
Q 017061 305 CDIIVQ-AER-DLKLSI--EL-LDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN 377 (378)
Q Consensus 305 ~~~~~~-~~~-~~~~~~--~~-~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~ 377 (378)
.++... ..+ .+.+.. +. ..+.+|++|.||++|+++|++++..| |++.+.|++||++|. |||||+.+.
T Consensus 311 ~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l-----Gi~~~~i~~~L~~~~-~~gR~e~v~ 382 (535)
T 2wtz_A 311 TDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTV-----GVSPEQAVPGLREIR-VPGRLEQID 382 (535)
T ss_dssp EEEEEETTTEEEEEEECTTSCEEEEEESCCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHTTCC-CTTSSEECC
T ss_pred EEEEEcCCCCeEEEEEeCCceEEEEEeCCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCC-CCCceEEEE
Confidence 222211 111 111111 11 35889999999999999999999999 999999999999997 999998763
No 8
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=3.9e-38 Score=318.47 Aligned_cols=231 Identities=19% Similarity=0.230 Sum_probs=161.7
Q ss_pred CChHHHHHHHHHhCCCC---CCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHH
Q 017061 75 FDLGRMNRLMDRLGNPH---SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKA 151 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~---~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~ 151 (378)
+.+++++++|..|+.+. .+.++||||||||||||+.||++||+++| +++ +|+ .+++++ +|.|.+
T Consensus 78 i~v~~~~~~l~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~-~t~---g~~n~~-----ig~p~t--- 144 (452)
T 1gg4_A 78 LIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCG-NTL-YTA---GNLNND-----IGVPMT--- 144 (452)
T ss_dssp EEESCHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEE-ECC---TTCCST-----THHHHH---
T ss_pred EEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEe-ecc---ccccCC-----cchhHH---
Confidence 44678999999988775 35789999999999999999999999999 554 443 234332 232221
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcc---cccccccCCCcEEEEccCChh
Q 017061 152 LNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD---ATNIISSSGLAASVITTIGEE 228 (378)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D---~t~~~~~~~p~vaVITNI~~D 228 (378)
.| -.+.++|++|+|+|+++++| .++++ +|+++|||||++|
T Consensus 145 ------------------------~~----------~~~~~~d~~VlE~g~~~~~~~~~~~~~~---~p~vaviTNI~~D 187 (452)
T 1gg4_A 145 ------------------------LL----------RLTPEYDYAVIELGANHQGEIAWTVSLT---RPEAALVNNLAAA 187 (452)
T ss_dssp ------------------------HT----------TCCTTCSEEEEECCCSSSSHHHHHHHHH---CCSEEEECCCC--
T ss_pred ------------------------HH----------cCCCCCcEEEEEeCCCCcchHHHHhCcc---CCCEEEECCCChH
Confidence 11 12467999999999999988 45555 4789999999999
Q ss_pred hHhhcCCCHHHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCccc
Q 017061 229 HTAALGGSLETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSC 305 (378)
Q Consensus 229 Hld~lG~tle~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (378)
|+|+|| |+|+|+++|++||+ +++++|+| .|||....+.. +.. ++++++|+.... ..++...
T Consensus 188 Hld~~g-t~e~~~~aK~~i~~~~~~~~~~V~n-~dd~~~~~~~~--~~~-~~~~~~~g~~~~-----------~~d~~~~ 251 (452)
T 1gg4_A 188 HLEGFG-SLAGVAKAKGEIFSGLPENGIAIMN-ADNNDWLNWQS--VIG-SRKVWRFSPNAA-----------NSDFTAT 251 (452)
T ss_dssp -------CHHHHHHHHHGGGGGCCTTCEEEEE-TTBCCHHHHHH--HHT-TSEEEEECSSCT-----------TCSBEEE
T ss_pred HhhhcC-CHHHHHHHHHHHHhhcccCCEEEEe-CCcHHHHHHHH--hhc-CCCEEEEeCCCC-----------CCcEEEE
Confidence 999998 99999999999997 67889999 57887665432 333 568888753110 0112111
Q ss_pred ceeEeecc-ccccc--ccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 306 DIIVQAER-DLKLS--IELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 306 ~~~~~~~~-~~~~~--~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
++.....+ .+.+. .+...+.+|++|.||++|+++|++++..+ |++.+.|+++|++|.++||||+.+
T Consensus 252 ~~~~~~~g~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~ 320 (452)
T 1gg4_A 252 NIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSV-----GATLDAIKAGLANLKAVPGRLFPI 320 (452)
T ss_dssp EEEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHHHHHT-----TCCHHHHHHHHTTCCCCTTSSEEE
T ss_pred EEEEcCCceEEEEEECCCEEEEEeCCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCceEE
Confidence 11111111 11111 12235789999999999999999999999 999999999999998899999875
No 9
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=8.3e-38 Score=316.22 Aligned_cols=224 Identities=17% Similarity=0.198 Sum_probs=163.7
Q ss_pred hHHHHHHHHHhCCCCC---CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHH
Q 017061 77 LGRMNRLMDRLGNPHS---KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALN 153 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~---~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~ 153 (378)
.++++++|..|+.+.. +.++||||||||||||+.||+++|+++|+ + ++||| +++++ +|.|++
T Consensus 80 v~~~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~-~--~~s~g--~~n~~-----ig~p~t----- 144 (454)
T 2am1_A 80 VDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYK-T--YKTQG--NYNNE-----IGLPYT----- 144 (454)
T ss_dssp CSCHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSC-E--EECCT--TCCST-----THHHHH-----
T ss_pred ECCHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhcCC-E--eecCC--ccCcc-----cchHHH-----
Confidence 4567777777766543 67899999999999999999999999995 3 67887 44432 233221
Q ss_pred HHHHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcc---cccccccCCCcEEEEccCChhhH
Q 017061 154 CLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD---ATNIISSSGLAASVITTIGEEHT 230 (378)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D---~t~~~~~~~p~vaVITNI~~DHl 230 (378)
.| -.+.++|++|+|+|+++++| .+++++ |+++|||||++||+
T Consensus 145 ----------------------~~----------~~~~~~d~~VlE~g~~~~~~~~~~~~~~~---p~vaviTNi~~DHl 189 (454)
T 2am1_A 145 ----------------------VL----------HMPEGTEKLVLEMGQDHLGDIHLLSELAR---PKTAIVTLVGEAHL 189 (454)
T ss_dssp ----------------------HH----------TCCTTCCEEEEECCCSSTTHHHHHHHHHC---CSEEEECCCCCSSC
T ss_pred ----------------------Hh----------cCCCCCcEEEEEcCCCCcchHHHHhCccC---CCEEEEcCCchHhh
Confidence 11 12468999999999999998 555554 78999999999999
Q ss_pred hhcCCCHHHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccce
Q 017061 231 AALGGSLETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDI 307 (378)
Q Consensus 231 d~lG~tle~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (378)
|+|| |+|+|+++|++||+ +++++|+| .|| ... ..+.. ++++++|+... ..++ .++
T Consensus 190 d~~g-t~e~~a~aK~~i~~~~~~~~~~V~n-~dd-~~~----~~~~~-~~~~~~~g~~~------------~~d~--~~i 247 (454)
T 2am1_A 190 AFFK-DRSEIAKGKMQIADGMASGSLLLAP-ADP-IVE----DYLPI-DKKVVRFGQGA------------ELEI--TDL 247 (454)
T ss_dssp TTCC-CHHHHHHHHGGGGTTCCTTCEEEEE-SCG-GGG----GGCCS-SSEEEEESTTS------------SBCE--EEE
T ss_pred hhcC-CHHHHHHHHHHHHhhcccCCEEEEE-cHH-HHH----HHHhc-CCcEEEEeCCC------------CCce--eee
Confidence 9998 99999999999997 57889999 465 442 22323 56788775211 0111 111
Q ss_pred eEeecc-cccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEec
Q 017061 308 IVQAER-DLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN 377 (378)
Q Consensus 308 ~~~~~~-~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~ 377 (378)
.....+ .+.+......+.+|++|.||++|+++|++++..+ |++.+.|+++|++|.+|||||+.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~~ 313 (454)
T 2am1_A 248 VERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQE-----GVSEEQIRLAFQHLELTRNRTEWKK 313 (454)
T ss_dssp EECSSCEEEEETTCSSEEEESSCCHHHHHHHHHHHHHHHHT-----TCCHHHHHHHGGGCCCCCCCSCEEC
T ss_pred EEeCCceEEEEEecCcEEEecCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCccCCeeEEE
Confidence 111111 1111110015889999999999999999999999 9999999999999988999998753
No 10
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=1.3e-34 Score=291.68 Aligned_cols=204 Identities=18% Similarity=0.114 Sum_probs=152.2
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~ 172 (378)
+.++||||||||||||++||+++|+++|++++++++ +|.|+++
T Consensus 103 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gn--------------ig~~~~~----------------------- 145 (439)
T 2x5o_A 103 QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN--------------IGLPALM----------------------- 145 (439)
T ss_dssp CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEES--------------SSBCHHH-----------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecc--------------cCHHHHH-----------------------
Confidence 368999999999999999999999999999987542 3666642
Q ss_pred CcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCCC
Q 017061 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (378)
Q Consensus 173 ~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~~ 252 (378)
.+ ..+.|++|+|+|+ +.+|.++.++ |+++|||||++||+|+||+|+|+|+++|++|+++++
T Consensus 146 --------------~~-~~~~d~~VlE~~~-~~l~~~~~~~---p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~~~ 206 (439)
T 2x5o_A 146 --------------LL-DDECELYVLELSS-FQLETTSSLQ---AVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK 206 (439)
T ss_dssp --------------HC-CTTCCEEEEECCH-HHHHTCCCCC---CSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCS
T ss_pred --------------Hh-CCCCCEEEEECCc-hhhcccccCC---CCEEEEeCCChhhcccccCCHHHHHHHHHHHHcCCC
Confidence 11 1346999999999 4577777654 789999999999999997799999999999999999
Q ss_pred eEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCchh
Q 017061 253 PLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNH 332 (378)
Q Consensus 253 ~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~h 332 (378)
++|+| .|||.+..++. . ++++++|+....+. ..+....+ .+.+. .+ ......+.++++|.|
T Consensus 207 ~~V~n-~dd~~~~~~~~----~-~~~~~~~g~~~~~~--~~~~~~~~------~~~~~-~~----~~~~~~~~l~l~G~h 267 (439)
T 2x5o_A 207 VCVVN-ADDALTMPIRG----A-DERCVSFGVNMGDY--HLNHQQGE------TWLRV-KG----EKVLNVKEMKLSGQH 267 (439)
T ss_dssp EEEEE-TTCGGGSCSCC----C-SSCCEEECSSSSSE--EEEEETTE------EEEEE-TT----EEEEEGGGCSCCSHH
T ss_pred EEEEe-CCCHHHHHHhh----c-CCcEEEEeCCCcCc--CcEEEECC------EEEEe-CC----cEEEeehhcCCCCHH
Confidence 99999 57786543321 1 45677765211000 00000000 01110 00 000113678999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 333 QLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 333 q~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
|++|+++|++++..+ |++.+.|+++|++|.+||||++.+
T Consensus 268 n~~NalaA~a~~~~l-----gi~~~~i~~~L~~f~~~~gR~e~~ 306 (439)
T 2x5o_A 268 NYTNALAALALADAA-----GLPRASSLKALTTFTGLPHRFEVV 306 (439)
T ss_dssp HHHHHHHHHHHHHHT-----TCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred HHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence 999999999999999 999999999999998899999875
No 11
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=7e-34 Score=289.02 Aligned_cols=219 Identities=18% Similarity=0.118 Sum_probs=153.7
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (378)
+.++..+++.++ +.++||||||||||||++||++||+++|+++.+. ++ |...+...
T Consensus 105 l~~~~~l~~~~~----~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~-------------ig--g~~~~~~~----- 160 (475)
T 1p3d_A 105 IQRAQMLAEIMR----FRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFV-------------NG--GLVKSAGK----- 160 (475)
T ss_dssp EEHHHHHHHHHH----TSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEE-------------EE--EEETTTTE-----
T ss_pred EEHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEE-------------EC--Cccccccc-----
Confidence 455655555554 2589999999999999999999999999974321 22 22111000
Q ss_pred HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCC
Q 017061 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS 236 (378)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~t 236 (378)
.....++|++|+|+|+ +|.++.. .+|+++|||||++||+|+||+|
T Consensus 161 ------------------------------~~~~~~~d~~VlE~~~---~~~~~~~--~~p~vaviTNI~~DHld~~G~t 205 (475)
T 1p3d_A 161 ------------------------------NAHLGASRYLIAEADE---SDASFLH--LQPMVSVVTNMEPDHMDTYEGD 205 (475)
T ss_dssp ------------------------------EEECCSSSEEEEECCC---TTSGGGG--CCCSEEEECCCCCCSGGGGTTC
T ss_pred ------------------------------ccccCCCCEEEEEecC---CcCcccc--ccCCEEEEcCCChhhhhhhcCC
Confidence 0012468999999984 4455543 3589999999999999999779
Q ss_pred HHHHHHHHhccc---cCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc
Q 017061 237 LETIAMAKSGII---KYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER 313 (378)
Q Consensus 237 le~ia~~Ka~Ii---k~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (378)
+|+|+++|+.++ ++++++|+| .|||.+..++.. .++++++|+... ..++...++.....+
T Consensus 206 ~e~ia~aK~~i~~~~~~~~~~V~n-~dd~~~~~~~~~----~~~~~~~~g~~~------------~~d~~~~~~~~~~~~ 268 (475)
T 1p3d_A 206 FEKMKATYVKFLHNLPFYGLAVMC-ADDPVLMELVPK----VGRQVITYGFSE------------QADYRIEDYEQTGFQ 268 (475)
T ss_dssp HHHHHHHHHHHHTTSCTTCEEEEE-TTCHHHHHHHHH----HCSEEEEEESST------------TCSEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEE-CCCHHHHHHHHh----cCCCEEEEecCC------------CCcEEEEEEEEcCCc
Confidence 999999988876 567889999 578876555433 356788775211 111211111111111
Q ss_pred -cccccc---cccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 314 -DLKLSI---ELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 314 -~~~~~~---~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
.+.+.. ....+.++++|.||++|+++|++++..+ |++.+.|+++|++|.+||||++.+
T Consensus 269 ~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~l-----gi~~~~i~~~L~~f~~~~gR~e~v 330 (475)
T 1p3d_A 269 GHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEE-----GIANEAILEALADFQGAGRRFDQL 330 (475)
T ss_dssp EEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHTCCCBTTSSEEE
T ss_pred eEEEEEECCCeEEEEEEcCccHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCCEEE
Confidence 111110 1125789999999999999999999999 999999999999998899999865
No 12
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=2.6e-33 Score=286.00 Aligned_cols=219 Identities=20% Similarity=0.143 Sum_probs=153.7
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (378)
+.++..+.+.++ +.++||||||||||||++||++||+++|+++.+. ++ |...+...
T Consensus 106 l~~~~~l~~~~~----~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~-------------ig--g~~~~~~~----- 161 (491)
T 2f00_A 106 IRRAEMLAELMR----FRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFV-------------NG--GLVKAAGV----- 161 (491)
T ss_dssp EEHHHHHHHHHT----TSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEE-------------EE--EEETTTTE-----
T ss_pred EEHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEE-------------EC--Ceeccccc-----
Confidence 455655555554 3589999999999999999999999999974321 12 22111000
Q ss_pred HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCC
Q 017061 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS 236 (378)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~t 236 (378)
.....++|++|+|+|+ +|.++.. .+|+++|||||++||+|+||+|
T Consensus 162 ------------------------------~~~~~~~d~~VlE~~~---~~~~~~~--~~p~vaviTNI~~DHld~~G~t 206 (491)
T 2f00_A 162 ------------------------------HARLGHGRYLIAEADE---SDASFLH--LQPMVAIVTNIEADHMDTYQGD 206 (491)
T ss_dssp ------------------------------EEECCSSSEEEEECCC---TTSGGGG--CCCSEEEECCCCSCSGGGTTTC
T ss_pred ------------------------------cccCCCCCEEEEEeCC---Cccchhc--CCCCEEEEcCCChhhhhhhcCC
Confidence 0112468999999984 4556543 3589999999999999999779
Q ss_pred HHHHHHHHhccc---cCCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc
Q 017061 237 LETIAMAKSGII---KYGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER 313 (378)
Q Consensus 237 le~ia~~Ka~Ii---k~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (378)
+|+|+++|+.++ ++++++|+| .|||.+..+ +.+.++++++|+... ..++...++.....+
T Consensus 207 ~e~ia~aK~~i~~~~~~~~~~V~n-~dd~~~~~~----~~~~~~~~~~~g~~~------------~~d~~~~~~~~~~~~ 269 (491)
T 2f00_A 207 FENLKQTFINFLHNLPFYGRAVMC-VDDPVIREL----LPRVGRQTTTYGFSE------------DADVRVEDYQQIGPQ 269 (491)
T ss_dssp HHHHHHHHHHHHTTSCTTCEEEEE-TTSHHHHHH----GGGCCSEEEEEESST------------TCSEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEE-CCCHHHHHH----HHhcCCcEEEEeCCC------------CCCEEEEEEEEcCCc
Confidence 999999998877 567889999 578865443 333456888775211 111221111111111
Q ss_pred -cccccc---cccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 314 -DLKLSI---ELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 314 -~~~~~~---~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
.+.+.. ....+.++++|.||++|+++|++++..+ |++.+.|+++|++|.+||||++.+
T Consensus 270 ~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l-----gi~~~~i~~~L~~f~~~~gR~e~v 331 (491)
T 2f00_A 270 GHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEE-----GIDDEAILRALESFQGTGRRFDFL 331 (491)
T ss_dssp EEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHHHHHH-----TCCHHHHHHHHHTCCCBTTSSEEE
T ss_pred eEEEEEECCceEEEEEEccchHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCCEEE
Confidence 111110 1125789999999999999999999999 999999999999998899999875
No 13
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=1.8e-33 Score=284.25 Aligned_cols=203 Identities=19% Similarity=0.129 Sum_probs=150.5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (378)
Q Consensus 94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (378)
.++|+||||||||||++||+++|+++|+++.+ .+++|.|++..
T Consensus 112 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~--------------~Gnig~~~~~~----------------------- 154 (451)
T 3lk7_A 112 SQLIGITGSNGKTTTTTMIAEVLNAGGQRGLL--------------AGNIGFPASEV----------------------- 154 (451)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCEEE--------------EETSSSCHHHH-----------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEE--------------eeecChhhhhh-----------------------
Confidence 48999999999999999999999999998743 12246665320
Q ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccC---
Q 017061 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--- 250 (378)
Q Consensus 174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~--- 250 (378)
.....++|++|+|+|+++ +|.++.+ +|+++|||||++||+|+|| |+|+|+++|++|++.
T Consensus 155 -------------~~~~~~~d~~VlE~~s~~-l~~~~~~---~p~iaviTNI~~DHld~~g-t~e~i~~aK~~i~~~~~~ 216 (451)
T 3lk7_A 155 -------------VQAANDKDTLVMELSSFQ-LMGVKEF---RPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSS 216 (451)
T ss_dssp -------------TTTCCTTCEEEEECCHHH-HTTCSSC---CCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTCCT
T ss_pred -------------hhcCCCCCEEEEECCccc-ccccccc---CCCEEEEcCCChhHhhhcC-CHHHHHHHHHHHHhcCCC
Confidence 011246899999999886 4666555 4789999999999999998 999999999999975
Q ss_pred CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecccccccccccccccCCCc
Q 017061 251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIG 330 (378)
Q Consensus 251 ~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G 330 (378)
++.+|+| .|||.+.. .+++.++++++|+..... .+.....+ .+.+. + ......+.++++|
T Consensus 217 ~~~~V~n-~dd~~~~~----~~~~~~~~~~~~g~~~~~---~~~~~~~~------~~~~~--~----~~~~~~~~l~l~G 276 (451)
T 3lk7_A 217 SDFLVLN-FNQGISKE----LAKTTKATIVPFSTTEKV---DGAYVQDK------QLFYK--G----ENIMSVDDIGVPG 276 (451)
T ss_dssp TSEEEEE-TTSHHHHH----HHTTCSSEEEEEESSSCC---SSEEEETT------EEEET--T----EEEEEGGGSSSCS
T ss_pred CCEEEEE-CCcHHHHH----HHhhcCCeEEEEccCCCc---CCEEEECC------EEEEC--C----cEEeeccccCCCc
Confidence 4569999 57886543 344567788887632100 00000000 01110 0 0011247899999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 331 NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 331 ~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
.||++|+++|++++..+ |++.+.|+++|++|.++|||++.+
T Consensus 277 ~hn~~NalaAia~a~~l-----gi~~~~i~~~L~~f~~~~gR~e~v 317 (451)
T 3lk7_A 277 SHNVENALATIAVAKLA-----GISNQVIRETLSNFGGVKHRLQSL 317 (451)
T ss_dssp HHHHHHHHHHHHHHHHH-----TCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred HHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCcEEEE
Confidence 99999999999999999 999999999999998899999865
No 14
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=2.2e-33 Score=272.31 Aligned_cols=228 Identities=15% Similarity=0.066 Sum_probs=150.4
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHH
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (378)
+.++..+.+.+. +..++|+||||||||||+.||+++|+++|++++....--..+++.... +|.|.+.
T Consensus 94 ~~~~e~~~~~~~---~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~---~~~p~~~------- 160 (326)
T 3eag_A 94 ISGPQWLSENVL---HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSAR---LPQTPRQ------- 160 (326)
T ss_dssp EEHHHHHHHHTG---GGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEE---CCCCCSS-------
T ss_pred EeHHHHHHHHHh---cCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCccee---cCCcccc-------
Confidence 344544444332 346899999999999999999999999999886432110112211111 1333220
Q ss_pred HHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccc--cCCCcEEEEccCChhhHhhcC
Q 017061 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIIS--SSGLAASVITTIGEEHTAALG 234 (378)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~--~~~p~vaVITNI~~DHld~lG 234 (378)
....+.|++|+|+|+.+......+.+ ..+|+++|||||++||+|+||
T Consensus 161 -------------------------------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~g 209 (326)
T 3eag_A 161 -------------------------------DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFA 209 (326)
T ss_dssp -------------------------------CTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSS
T ss_pred -------------------------------ccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcC
Confidence 23467899999999865432222211 236899999999999999998
Q ss_pred CCHHHHHHHHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEee
Q 017061 235 GSLETIAMAKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQA 311 (378)
Q Consensus 235 ~tle~ia~~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (378)
|+|+|+++|++|++ +++.+|+| .|||....++.+ ...+++++|+.. .+..... ... +.. +.+..
T Consensus 210 -s~e~y~~aK~~i~~~~~~~~~~V~n-~Dd~~~~~~~~~---~~~~~~~~~g~~-~d~~~~~--~~~--~g~---f~~~~ 276 (326)
T 3eag_A 210 -DLGAIQTQFHYLVRTVPSEGLIVCN-GRQQSLQDTLDK---GCWTPVEKFGTE-HGWQAGE--ANA--DGS---FDVLL 276 (326)
T ss_dssp -SHHHHHHHHHHHHTTSCTTSEEEEE-SSCHHHHHHHTT---CCCSCEEEESSS-SSEEEEE--ECT--TSC---EEEEE
T ss_pred -CHHHHHHHHHHHHHhCCCCCEEEEe-CCCHHHHHHHhh---ccCCCEEEECCC-CcEEEEE--ecC--CcE---EEEEE
Confidence 99999999999997 57889999 688876554332 134567777521 0000000 000 000 11110
Q ss_pred cccccccccccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCcee
Q 017061 312 ERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAE 372 (378)
Q Consensus 312 ~~~~~~~~~~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR 372 (378)
.+ .....+.++++|+||++|+++|++++..+ |++.+.|+++|++|. .+.|
T Consensus 277 ~~-----~~~~~~~l~l~G~hNv~NalaAia~a~~l-----Gi~~~~i~~~L~~f~-gv~R 326 (326)
T 3eag_A 277 DG-----KTAGRVKWDLMGRHNRMNALAVIAAARHV-----GVDIQTACEALGAFK-NVKR 326 (326)
T ss_dssp TT-----EEEEEECCCCCSHHHHHHHHHHHHHHHHH-----TCCHHHHHHHHHTCC-CEEC
T ss_pred CC-----ceEEEEEecCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCC-CCCC
Confidence 00 01235789999999999999999999999 999999999999984 4433
No 15
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=3.4e-33 Score=283.54 Aligned_cols=198 Identities=18% Similarity=0.108 Sum_probs=147.4
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccc-eEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIR-ERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN 171 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~-eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~ 171 (378)
+.++|+||||||||||++||++||+++|++++.++||++.+++ ++++++
T Consensus 113 ~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~~g~~~~~~~------------------------------ 162 (469)
T 1j6u_A 113 KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKG------------------------------ 162 (469)
T ss_dssp CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSEECC------------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecccCccccccC------------------------------
Confidence 4689999999999999999999999999999999999987666 555432
Q ss_pred CCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccCC
Q 017061 172 GCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG 251 (378)
Q Consensus 172 ~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~~ 251 (378)
+.| +|+|+|+.+ .++. ..+|+++|||||++||+|+||+|+|+|+++|..++...
T Consensus 163 --------------------~~~-~V~E~~~~~---~~~~--~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~ 216 (469)
T 1j6u_A 163 --------------------NGP-VVYELDESE---EFFS--EFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNT 216 (469)
T ss_dssp --------------------SSC-EEEEECTTS---GGGG--GCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTC
T ss_pred --------------------CCC-EEEECCCcc---Cccc--cccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhC
Confidence 246 999999764 4443 23579999999999999999966999999998877543
Q ss_pred CeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc--cccc--cc-ccccccc
Q 017061 252 RPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER--DLKL--SI-ELLDVKL 326 (378)
Q Consensus 252 ~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~-~~~~i~l 326 (378)
..+|+| .|||.+.. . ++++|+... .++.. ++.....+ .+.+ .. ....+++
T Consensus 217 ~~~V~n-~dd~~~~~--------~--~~~~~g~~~-------------~d~~~-~~~~~~~~~~~f~~~~~~~~~~~~~l 271 (469)
T 1j6u_A 217 DLVVTF-AEDELTSH--------L--GDVTFGVKK-------------GTYTL-EMRSASRAEQKAMVEKNGKRYLELKL 271 (469)
T ss_dssp SEEEEE-TTCTTTGG--------G--CSEEECSSS-------------SSEEE-EEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred CEEEEE-CCChhhcc--------c--eEEEEECCC-------------ceEEE-EEEECCCCCEEEEEEECCeEEEEEEe
Confidence 378888 46775421 1 456654210 11111 11111000 0111 01 1125789
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 327 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 327 ~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
+++|.||++|+++|++++..+ |++.+.|+++|++|.+||||++.+
T Consensus 272 ~l~G~hn~~NalaAia~a~~l-----gi~~~~i~~~L~~f~g~~gR~e~v 316 (469)
T 1j6u_A 272 KVPGFHNVLNALAVIALFDSL-----GYDLAPVLEALEEFRGVHRRFSIA 316 (469)
T ss_dssp SSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred cCcCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCcEEE
Confidence 999999999999999999999 999999999999998899999876
No 16
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=5.7e-33 Score=283.56 Aligned_cols=206 Identities=17% Similarity=0.136 Sum_probs=147.6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017061 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (378)
Q Consensus 94 ~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (378)
.++|+||||||||||++||+++|+++|+++...+.. .+|.+|.+.
T Consensus 122 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg---------~~~~~g~~~-------------------------- 166 (494)
T 4hv4_A 122 RHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGG---------LVKAAGTHA-------------------------- 166 (494)
T ss_dssp SEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEE---------EETTTTEEE--------------------------
T ss_pred CCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECC---------ccccccccc--------------------------
Confidence 479999999999999999999999999864332111 112122211
Q ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccccCCCcEEEEccCChhhHhhcCCCHHHHHHHHhccccC---
Q 017061 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--- 250 (378)
Q Consensus 174 ~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~~~~p~vaVITNI~~DHld~lG~tle~ia~~Ka~Iik~--- 250 (378)
...+.|++|+|+|+++. +.. ..+|+++|||||++||+|+||+|+|+|+++|++|++.
T Consensus 167 ---------------~~~~~d~~VlE~~e~~~---s~~--~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~ 226 (494)
T 4hv4_A 167 ---------------RLGSSRYLIAEADESDA---SFL--HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPF 226 (494)
T ss_dssp ---------------ECCSSSEEEEECCCGGG---GGG--GCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCT
T ss_pred ---------------ccCCCcEEEEEcccccc---ccc--cccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCC
Confidence 11458999999996543 322 3468999999999999999977999999999999964
Q ss_pred CCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccchhccccccCCCCCCcccceeEeecc-ccccc--c-ccccccc
Q 017061 251 GRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLS--I-ELLDVKL 326 (378)
Q Consensus 251 ~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~i~l 326 (378)
++.+|+| .|||.+..+ +++..+++++|+.. ...++...++.....+ .+.+. . ...++.+
T Consensus 227 ~g~~V~n-~dd~~~~~~----~~~~~~~~~~~g~~------------~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l 289 (494)
T 4hv4_A 227 YGRAVMC-IDDPVVREL----LPRVGRHITTYGFS------------DDADVQIASYRQEGPQGHFTLRRQDKPLIEVTL 289 (494)
T ss_dssp TCEEEEE-TTSHHHHHH----GGGCCSCEEEEESS------------TTCSEEEEEEEEETTEEEEEEECTTSCCEEEEE
T ss_pred CCEEEEE-CCCHHHHHH----HHhcCCCEEEEecC------------CCCceEEEEEEEeCCEEEEEEEECCceEEEEEe
Confidence 5788999 578865443 33445677777521 1122222222211111 11111 1 1335789
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 327 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 327 ~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
+++|.||++|+++|++++..+ |++.+.|+++|++|.++|||++.+
T Consensus 290 ~l~G~hnv~NalaAia~a~~l-----gi~~~~i~~~L~~f~g~~~R~e~v 334 (494)
T 4hv4_A 290 NAPGRHNALNAAAAVAVATEE-----GIEDEDILRALVGFQGTGRRFDFL 334 (494)
T ss_dssp SSCSHHHHHHHHHHHHHHHHH-----TCCHHHHHHHHHHCCCBTTSSEEE
T ss_pred cCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCccEEe
Confidence 999999999999999999999 999999999999998899999865
No 17
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=99.97 E-value=5.4e-32 Score=278.18 Aligned_cols=234 Identities=16% Similarity=0.119 Sum_probs=145.0
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHcCCceEee--------eCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHH
Q 017061 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY--------TSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLD 164 (378)
Q Consensus 93 ~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~--------tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~ 164 (378)
..++|+||||||||||++||++||+++|++++.+ +||. +++ +++|.+...
T Consensus 121 ~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~~~T~~--nln-----~~ig~~~~~--------------- 178 (524)
T 3hn7_A 121 SRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDT--NLQ-----QVFAHSSYL--------------- 178 (524)
T ss_dssp GSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCCSSCH--HHH-----HHTTSSEEC---------------
T ss_pred cCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEeccccCch--hhh-----hhhhhHHhh---------------
Confidence 4689999999999999999999999999988642 2221 000 001211100
Q ss_pred HHHhhcCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcccccccc--cCCCcEEEEccCChhhHhhcCCCHHHHHH
Q 017061 165 EAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIIS--SSGLAASVITTIGEEHTAALGGSLETIAM 242 (378)
Q Consensus 165 ~~~~~~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D~t~~~~--~~~p~vaVITNI~~DHld~lG~tle~ia~ 242 (378)
.....+. ..+.++|++|+|+|+.+......+.. ..+|+++|||||++||+|+|| |+|+|++
T Consensus 179 -----~~~~~~~-----------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~g-s~e~y~~ 241 (524)
T 3hn7_A 179 -----GTEKDDS-----------DNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQT 241 (524)
T ss_dssp -----CCCCCSS-----------CTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHH
T ss_pred -----CCCcccc-----------cccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccC-CHHHHHH
Confidence 0000000 01234689999999976543333322 246899999999999999997 8999999
Q ss_pred HHhcccc---CCCeEEEcCCCChhHHHHHHHHHHhhCCeEEEecccccc---hhccc----c-ccCCCCCCcccceeEee
Q 017061 243 AKSGIIK---YGRPLVLGGPFLPHIEHILRDEASLMCSQVVSAYDAGIR---ATING----L-SMFNDRPCQSCDIIVQA 311 (378)
Q Consensus 243 ~Ka~Iik---~~~~~V~~~~d~~~~~~vl~~~a~~~~~~~~~~~~~~~~---~~~~~----~-~~~~~~~~~~~~~~~~~ 311 (378)
+|+.|++ +++.+|+| .|||....++.. ...+++++|+..... +..+. . .+....++...++. .
T Consensus 242 aK~~i~~~~~~~g~~VlN-~DD~~~~~~~~~---~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~--~ 315 (524)
T 3hn7_A 242 QFHHMVRMIPSTGKIIMP-AATISLEDTLAK---GVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELIS--A 315 (524)
T ss_dssp HHHHHHTTSCTTSEEEEE-SSCHHHHHHHHT---CCCSCEEEEEEEC-------------------CCCSEEEEEEE--T
T ss_pred HHHHHHHhCCCCCEEEEE-CCCHHHHHHHHh---ccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEE--C
Confidence 9999996 56789999 688876544322 134567776531000 00000 0 00001222221111 1
Q ss_pred cc-ccccc--cc---ccccccCCCchhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCceeEEEe
Q 017061 312 ER-DLKLS--IE---LLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 376 (378)
Q Consensus 312 ~~-~~~~~--~~---~~~i~l~l~G~hq~~NalaAlaaa~~L~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 376 (378)
.+ .+.+. .. ...+.++++|.||++|+++|++++..+ |++.+.|+++|++|.++|||++.+
T Consensus 316 ~g~~f~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~ 381 (524)
T 3hn7_A 316 DGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNI-----GVSVKTACAALSAFAGIKRRMELI 381 (524)
T ss_dssp TTTEEEEEETTEEEEEEEEECSCCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHTCCCBTTSSEEE
T ss_pred CceEEEEEECCccceeEEEEeCCCcHHHHHhHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCceEEEE
Confidence 11 11111 11 245789999999999999999999999 999999999999998899999875
No 18
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=96.17 E-value=0.018 Score=55.50 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=85.8
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh
Q 017061 93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL 169 (378)
Q Consensus 93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~~~~~~~~~~~ 169 (378)
+.+.|.|+|| -||++|+..|...|++.|++++.+.|-.-. . .+...|.+++.........+++..
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg-~----~~~~~gi~~Dav~~df~aG~ve~~------- 218 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTG-V----MLEGDGVALDAVRVDFAAGAVEQM------- 218 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHH-H----HHHSCSCCGGGSBHHHHHHHHHHH-------
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchh-h----hhhcCCcchhHHHHHHHhhhHHHH-------
Confidence 3678999999 799999999999999999999986543211 0 111113344321111111222211
Q ss_pred cCCCcCHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCcc-----cccccccCCCc-EEEEccCChhhHhhcC----CCHHH
Q 017061 170 ENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD-----ATNIISSSGLA-ASVITTIGEEHTAALG----GSLET 239 (378)
Q Consensus 170 ~~~~~t~fE~~t~~a~~~f~~~~~d~~VlEvg~gg~~D-----~t~~~~~~~p~-vaVITNI~~DHld~lG----~tle~ 239 (378)
..-..++.||+++|= .|+... ...++...+|+ +.++...++-|++-|- .++++
T Consensus 219 ----------------~~~~~~~~d~vlVEG-qGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~ 281 (349)
T 2obn_A 219 ----------------VMRYGKNYDILHIEG-QGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPE 281 (349)
T ss_dssp ----------------HHHHTTTCSEEEECC-CCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHH
T ss_pred ----------------HHHhccCCCEEEEeC-CCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHH
Confidence 112345789999995 333210 12344445566 6677777776662221 23443
Q ss_pred HHHHHhcc---cc--CCCe---EEEcCC--CChhHHHHHHHHHHhhCCeEEE
Q 017061 240 IAMAKSGI---IK--YGRP---LVLGGP--FLPHIEHILRDEASLMCSQVVS 281 (378)
Q Consensus 240 ia~~Ka~I---ik--~~~~---~V~~~~--d~~~~~~vl~~~a~~~~~~~~~ 281 (378)
....-..+ -. ++.. +++|.. ++.+..+.++...+..+.|++.
T Consensus 282 ~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~glPv~d 333 (349)
T 2obn_A 282 VIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPCTD 333 (349)
T ss_dssp HHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHHHHHHHHHHHHHHCSCEEC
T ss_pred HHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEE
Confidence 33322222 11 2211 456622 2234555666677777888764
No 19
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.21 E-value=0.92 Score=43.28 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 80 ~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+.+++.+-....+.++|+|+|. .||||++.-|+..|...|++|+++
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 44556665433456779999996 789999999999999999999875
No 20
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.96 E-value=0.99 Score=44.68 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=30.4
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
.++|.|+|. .|||||+.-|+..|...|++|.++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 468999986 68999999999999999999988643
No 21
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.64 E-value=0.032 Score=52.88 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=31.1
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
..|+|+|+| --|||||+.-|+..|.+.|+||+++
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 568999995 5799999999999999999999986
No 22
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.34 E-value=0.58 Score=46.26 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=29.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..+|.++|- .|||||+..|+..|...|++|.+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 468999986 5799999999999999999998754
No 23
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=94.14 E-value=0.051 Score=48.96 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061 92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 92 ~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
.+++.|-|||| .|||+++..|...|++.|++|+.|-
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 35688999998 7999999999999999999999874
No 24
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=93.92 E-value=0.3 Score=52.40 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=31.5
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHHc-----CCceEeee
Q 017061 93 KFKTVHIAGT---KGKGSTAAFLSSILRAE-----GYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~-----G~~vg~~t 127 (378)
..+.|-|+|| .|||+++.-|..+|+.. |++|+.|-
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 4678999998 79999999999999999 99999874
No 25
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=93.09 E-value=0.19 Score=48.37 Aligned_cols=38 Identities=32% Similarity=0.354 Sum_probs=33.6
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
+.+.|.|+|| -|||+|+..|...|++.|++++.+.+..
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgq 208 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQ 208 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSH
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCc
Confidence 4678999998 7999999999999999999999877653
No 26
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.80 E-value=0.099 Score=46.04 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=28.8
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|.|+++ .||||++.-|+..|.+.|+||.++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 57888876 789999999999999999999885
No 27
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.79 E-value=0.14 Score=44.07 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=30.6
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
.+++|.|+|. .||||++..|...|...|++|+.+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4679999997 4999999999999999999998875
No 28
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=92.74 E-value=0.12 Score=47.43 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=32.5
Q ss_pred CCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061 92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 92 ~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
.+++.|-|||| .|||+++..|...|++.|++|+.|-
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46789999998 5999999999999999999999874
No 29
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=92.44 E-value=0.13 Score=46.74 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=31.8
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEeee
Q 017061 93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..+.|-|||| .|||+++..|...|++.|++|+.|-
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 4578999999 7999999999999999999999874
No 30
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.36 E-value=0.14 Score=44.26 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=28.9
Q ss_pred CcEEEEeC---CCChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTG---TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+++|.|++ -.||||++..|+..|...|++|.++
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 36888884 4789999999999999999999875
No 31
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.71 E-value=0.4 Score=44.10 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=32.0
Q ss_pred CCCCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 90 PHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 90 p~~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+....++|.||++ -||||++.-|+..|.+.|+||.+.
T Consensus 78 ~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 78 PDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp TTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 3456789999976 699999999999999999999875
No 32
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.15 E-value=0.42 Score=44.61 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=31.1
Q ss_pred CCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
...++|.||++ -||||++.-|+..|.+.|+||.++
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 45679999976 699999999999999999999875
No 33
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=90.99 E-value=0.98 Score=45.89 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=30.7
Q ss_pred cEEEEe-CC---CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 95 KTVHIA-GT---KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 95 ~~I~VT-GT---nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
+.|-|+ || -|||.+++-|..+|+..|++|..|-+
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~ 41 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKL 41 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeec
Confidence 678888 76 89999999999999999999998865
No 34
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=90.51 E-value=0.47 Score=45.92 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHhCCC-----CCCCcEEEEe---CCCChHHHHHHHHHHHHH------cCCceEee
Q 017061 76 DLGRMNRLMDRLGNP-----HSKFKTVHIA---GTKGKGSTAAFLSSILRA------EGYSVGCY 126 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p-----~~~~~~I~VT---GTnGKtSTt~~l~~iL~~------~G~~vg~~ 126 (378)
.++.+..+...++.+ ....++|+|+ |-.||||++..|+..|.. .|++|.+.
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 85 SIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 689998888887643 3457899999 457999999999999984 69999775
No 35
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=90.17 E-value=0.3 Score=43.82 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=28.3
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|+|+++ .||||++..|+..|.+.|++|.++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 57888755 689999999999999999999875
No 36
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.98 E-value=0.26 Score=43.78 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=29.7
Q ss_pred CCcEEEEeC---CCChHHHHHHHHHHHHHc-CCceEee
Q 017061 93 KFKTVHIAG---TKGKGSTAAFLSSILRAE-GYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTG---TnGKtSTt~~l~~iL~~~-G~~vg~~ 126 (378)
..++|.|++ -.||||++..|+..|.+. |++|.++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 457899985 478999999999999998 9999876
No 37
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.89 E-value=0.29 Score=44.29 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=29.9
Q ss_pred CCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.++|.|+++ .||||++..|+..|...|++|.++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 4578999865 579999999999999999999875
No 38
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.85 E-value=0.45 Score=44.21 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=31.3
Q ss_pred CCCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 91 ~~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
..+.++|.||++ -||||++.-|+..|.+.|++|.++
T Consensus 89 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 89 QAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp TTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 345689999876 699999999999999999999875
No 39
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=89.81 E-value=0.34 Score=42.84 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=28.4
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|.|+++ .||||++..|+..|.+.|++|.++
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 57888865 689999999999999999999876
No 40
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=89.67 E-value=1.6 Score=44.44 Aligned_cols=34 Identities=41% Similarity=0.592 Sum_probs=31.0
Q ss_pred cEEEEe-CC---CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 95 KTVHIA-GT---KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 95 ~~I~VT-GT---nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
+.|-|| || -|||.+++-|..+|+..|++|..|-+
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~ 50 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKI 50 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeec
Confidence 679999 76 79999999999999999999998865
No 41
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.13 E-value=0.32 Score=44.08 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=29.1
Q ss_pred CCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+.++|.|++. .||||++..|+..|. .|++|.++
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli 61 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI 61 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence 45689999865 679999999999999 99999875
No 42
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=88.84 E-value=0.53 Score=42.62 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.1
Q ss_pred CcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.++|.|+++ .||||++..|+..|.+.|++|.++
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999865 679999999999999999999875
No 43
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.57 E-value=0.82 Score=42.01 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEe-----CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIA-----GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VT-----GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+..+++++..- .++|.|+ |-.||||++..|+..|...|++|.++
T Consensus 23 ~~~~~r~~~~~------~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 23 LEELRRILSNK------NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HHHHHHHHHHH------CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcCC------CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 34566666542 2345555 46899999999999999999999875
No 44
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.57 E-value=0.48 Score=43.51 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=28.0
Q ss_pred CcEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+++|+|+ |-.||||++..|+..|.+.|++|.++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 3566666 56899999999999999999999875
No 45
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.43 E-value=0.43 Score=43.12 Aligned_cols=32 Identities=34% Similarity=0.363 Sum_probs=27.1
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|+|+ |-.||||++..|+..|.+.|++|.++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 456665 56899999999999999999999875
No 46
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=88.19 E-value=0.47 Score=43.72 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=28.3
Q ss_pred cEEEEeC---CCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTG---TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|.|++ -.||||++..|+..|.+.|++|.++
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 5899985 5789999999999999999999774
No 47
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.09 E-value=1.3 Score=38.43 Aligned_cols=47 Identities=21% Similarity=0.358 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 80 ~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.++.+++.....+-.+|+|.|- .||||++.+|..++...|.++|.+
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v 56 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV 56 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence 44555555432234568999997 589999999999998767566653
No 48
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.96 E-value=0.55 Score=43.50 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=29.9
Q ss_pred CCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEee
Q 017061 92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
...++|.|+| -.||||++..|+..|.+.|++|.++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 4567888884 4789999999999999999999875
No 49
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=87.75 E-value=0.5 Score=42.56 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=27.9
Q ss_pred cEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|.|+++ .||||++..|+..|.+.|++|.++
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIV 37 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 57788754 689999999999999999999886
No 50
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=87.14 E-value=0.75 Score=44.60 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHhCCCC-----CCCcEEEEe---CCCChHHHHHHHHHHHH------HcCCceEee
Q 017061 75 FDLGRMNRLMDRLGNPH-----SKFKTVHIA---GTKGKGSTAAFLSSILR------AEGYSVGCY 126 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~-----~~~~~I~VT---GTnGKtSTt~~l~~iL~------~~G~~vg~~ 126 (378)
+.++.+..+.+..+.+. ...++|+|+ |--|||||+..|+..|. ..|++|.+.
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 46788888887766543 457899999 56799999999999998 579999875
No 51
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=86.09 E-value=0.79 Score=44.01 Aligned_cols=35 Identities=20% Similarity=0.080 Sum_probs=30.8
Q ss_pred CCCcEEEEeCC---CChHHHHHHHHHHHHHcCCceEee
Q 017061 92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VTGT---nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+.++|+|++. .||||++..|+..|...|++|.+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli 178 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 46789999864 689999999999999999999875
No 52
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=85.61 E-value=0.98 Score=42.50 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=30.3
Q ss_pred CCCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 92 SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 92 ~~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
...++|.|+ |--||||++..++..|.+.|+||.+...
T Consensus 11 ~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 11 KGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp TTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 344667776 5688999999999999999999988754
No 53
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=85.31 E-value=1.1 Score=42.32 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=29.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+..+|.|+|. .|||||+..|+..|...|.+|.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3468999987 489999999999999999999764
No 54
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.22 E-value=0.83 Score=39.98 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=25.9
Q ss_pred EEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+|.|+ |-.||||++..|+..|...| +|.++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 56776 56799999999999999999 99874
No 55
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=84.72 E-value=1.7 Score=37.49 Aligned_cols=48 Identities=29% Similarity=0.350 Sum_probs=34.0
Q ss_pred HHHHHHHHhCC-CCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 79 RMNRLMDRLGN-PHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 79 r~~~ll~~lg~-p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.+..+++.+-. +..+..+|+|+|- .||||++.+|...|...|.++...
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 34445444332 2234568999997 589999999999998878777554
No 56
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=83.89 E-value=0.68 Score=39.61 Aligned_cols=33 Identities=36% Similarity=0.585 Sum_probs=23.1
Q ss_pred hCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 87 LGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 87 lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
+|++..+..+|+|+|. .||||++.+|+.. |+.+
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~----g~~~ 35 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW----GYPV 35 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT----TCCE
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC----CCEE
Confidence 4677777889999996 7999999998874 6653
No 57
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=83.68 E-value=0.6 Score=44.75 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=28.4
Q ss_pred CcEEEEeC---CCChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTG---TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+++|+|++ -.||||++.-|+..|...|+||.+.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI 36 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYV 36 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 36788874 4789999999999999999999875
No 58
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.23 E-value=1.6 Score=37.05 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.7
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+|+|+|. .||||.+.+|+..|...|+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6899996 89999999999999999998754
No 59
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=82.73 E-value=1.7 Score=37.22 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=29.9
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..++|.|+|. .||||+...|...|...|++++.+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 3578999997 6899999999999998999998753
No 60
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=82.44 E-value=1.6 Score=40.08 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=31.4
Q ss_pred CCCcEEEEeC----CCChHHHHHHHHHHHHHcCCceEee
Q 017061 92 SKFKTVHIAG----TKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VTG----TnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
...|.|-||| +=|||-|++-|..+|++.|++|.+.
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~ 59 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSI 59 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceee
Confidence 4678999999 5899999999999999999999763
No 61
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=82.17 E-value=1 Score=38.38 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=28.3
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|+|.|. .||||...+|...+...|+++|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 68999997 579999999999999999998864
No 62
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=81.96 E-value=1.8 Score=40.23 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=24.7
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHcC
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEG 120 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G 120 (378)
.+..+|+|+|. .||||++.+|...|...|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 34568999996 799999999999998755
No 63
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=81.65 E-value=1.2 Score=41.21 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=27.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
+..+|+|||. .||||++.+|+..|...|+++.++..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~ 41 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEG 41 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeec
Confidence 4468999996 79999999999999877777655443
No 64
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.92 E-value=2.2 Score=39.66 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHH-cCCceEeee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRA-EGYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~-~G~~vg~~t 127 (378)
+..+|+|.|- .|||||+..|+..+.. .|++|.+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4458888876 4899999999999985 899998754
No 65
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=80.60 E-value=2.2 Score=40.61 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=30.0
Q ss_pred CCcEEEEe---CCCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 93 KFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 93 ~~~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
..++|.|+ |--||||++.-++..|.+.|+||.+...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 62 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST 62 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 44667666 5589999999999999999999988753
No 66
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=80.51 E-value=2.2 Score=42.00 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=29.6
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHc-CCceEeee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAE-GYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~-G~~vg~~t 127 (378)
..++|.|+|. .|||||+.-|+..|... |++|.+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3468888875 78999999999999998 99998753
No 67
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=79.82 E-value=2.6 Score=36.11 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=28.8
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
.+..+|.|+|. .||||.+.+|+.-|...|+.+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 34568999996 89999999999999988888744
No 68
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=79.62 E-value=2.6 Score=36.12 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=28.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+..+|.|+|- .||||.+..|+.-|...|+.+-.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 3468999996 899999999999999889887544
No 69
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.36 E-value=2.7 Score=39.34 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=28.7
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
..+|.|+|-| |||||+..|+..|...|.+|.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 4589999974 79999999999999999998764
No 70
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=79.22 E-value=1.5 Score=41.37 Aligned_cols=33 Identities=21% Similarity=0.092 Sum_probs=27.4
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHHcCCceEeee
Q 017061 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+.|.|+ |-.||||++..++..|.+.|+||.+..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345555 558999999999999999999998863
No 71
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=79.05 E-value=2.6 Score=39.84 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=35.8
Q ss_pred HHHHHHhCCCCCCCcEEEEeCCC--ChHHHHHHHHHHHHHcCCceEee
Q 017061 81 NRLMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 81 ~~ll~~lg~p~~~~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.++..+.....+.++|+|+|-+ ||||+...|...+...|.+|.+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 34555554444567899999974 79999999999999889998775
No 72
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=78.09 E-value=2.8 Score=42.11 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=29.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+.++|.|+|. .|||||+.-|+..|...|++|.+.+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3558999986 7899999999999999999998754
No 73
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=77.85 E-value=4.8 Score=37.37 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=28.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..+|.++|- .||||++..|+..+...|.+|.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 458888875 6899999999999999999997743
No 74
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=77.81 E-value=11 Score=36.15 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=27.3
Q ss_pred EEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 96 TVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 96 ~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
++.++| -.||||++..++..|...|++|.+...
T Consensus 4 i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 444554 478999999999999999999988765
No 75
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=77.76 E-value=2.3 Score=38.82 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=29.7
Q ss_pred CCcEEEEeCC----CChHHHHHHHHHHHHHcCCceEe
Q 017061 93 KFKTVHIAGT----KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 93 ~~~~I~VTGT----nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
..|.|-|||- =|||-|++-|..+|++.|++|..
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~ 58 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEEC
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEE
Confidence 4689999984 69999999999999999999865
No 76
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=77.42 E-value=2.3 Score=35.76 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=25.7
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+|+|+|. .||||.+.+|+.-|...|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6888986 79999999999999888887643
No 77
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=77.30 E-value=3.5 Score=35.57 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=24.2
Q ss_pred EEEEeCCC--ChHHHHHHHHHHHHHcCCceEee
Q 017061 96 TVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 96 ~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+|+|.|-| ||||+..+|+..+...|..++-+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~ 35 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGF 35 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCEEEcCE
Confidence 57888875 59999999999998778554433
No 78
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=77.09 E-value=1.7 Score=37.73 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=28.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
.|.|-|. .||||-+.+|+.-|++.|++|.+..=|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 4677775 899999999999999999998765445
No 79
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=75.62 E-value=4 Score=34.36 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=28.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+..+|.|+|- .||||.+..|+..|...|+++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3468999996 789999999999999989887554
No 80
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=75.00 E-value=2.8 Score=40.00 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=28.9
Q ss_pred CcEEEEe--CCCChHHHHHHHHHHHH--HcCCceEeeeC
Q 017061 94 FKTVHIA--GTKGKGSTAAFLSSILR--AEGYSVGCYTS 128 (378)
Q Consensus 94 ~~~I~VT--GTnGKtSTt~~l~~iL~--~~G~~vg~~tS 128 (378)
.+++.++ |-.||||++..++..|. ..|++|.+...
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3556555 56899999999999999 89999988755
No 81
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=74.39 E-value=4.1 Score=34.06 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=26.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
-.+|.++|. .||||++.+|+..|...|+++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~ 38 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT 38 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEE
Confidence 357999997 68999999999999888887643
No 82
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=74.38 E-value=2.1 Score=40.54 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=27.8
Q ss_pred cEEEEe--CCCChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 95 ~~I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
+++.++ |-.||||++..++..|.+.|++|.+...
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~ 52 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLST 52 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 444444 6689999999999999999999988754
No 83
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=74.07 E-value=3.2 Score=34.78 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=27.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
++|.|+|. .||||.+..|+.-|...|+++..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 46888886 899999999999999888877544
No 84
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=74.00 E-value=1.2 Score=39.21 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=25.4
Q ss_pred EEEe--CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 97 VHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 97 I~VT--GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
|+|+ |-.||||++.-|+..|.+.|+||.++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4555 45789999999999999999999775
No 85
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=72.62 E-value=3.6 Score=41.82 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=29.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
..+++.++|. -||||++..++..|.+.|+||.+...
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~ 44 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST 44 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3456666654 89999999999999999999987643
No 86
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=72.31 E-value=6 Score=37.22 Aligned_cols=42 Identities=29% Similarity=0.390 Sum_probs=29.5
Q ss_pred HHhCCC-CCCCcEEEEeCC--CChHHHHHHHHHHHHH--cCCceEee
Q 017061 85 DRLGNP-HSKFKTVHIAGT--KGKGSTAAFLSSILRA--EGYSVGCY 126 (378)
Q Consensus 85 ~~lg~p-~~~~~~I~VTGT--nGKtSTt~~l~~iL~~--~G~~vg~~ 126 (378)
..++.+ .....+|+|+|. .||||++..|..+|.. .+.++++.
T Consensus 82 ~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i 128 (321)
T 3tqc_A 82 QFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128 (321)
T ss_dssp HHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred HHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence 345554 334458999996 6899999999999974 23456553
No 87
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=72.09 E-value=7.6 Score=36.57 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=28.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+..+|++.|-| |||||...|+..++..|.+|.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 34588898864 79999999999999998888764
No 88
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=71.72 E-value=3.2 Score=35.86 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
....+|+|||- .||||++.+|+..| |+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l---g~~v 40 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY---GAHV 40 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH---CCEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc---CCEE
Confidence 34568999996 89999999998864 6654
No 89
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=71.66 E-value=4.5 Score=38.54 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=28.0
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHH--HcCCceEeeeC
Q 017061 95 KTVHIA---GTKGKGSTAAFLSSILR--AEGYSVGCYTS 128 (378)
Q Consensus 95 ~~I~VT---GTnGKtSTt~~l~~iL~--~~G~~vg~~tS 128 (378)
++|.|+ |--||||++.-++..|. +.|+||.++..
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 445555 56899999999999999 89999988744
No 90
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=71.60 E-value=3.4 Score=40.58 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=29.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeC
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tS 128 (378)
..+|.|+|- .||||++.-|+..|...|++|.+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 357888874 68999999999999999999987643
No 91
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=70.59 E-value=6.5 Score=36.54 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=27.0
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHHcCCceEe
Q 017061 94 FKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 94 ~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~ 125 (378)
..+|++.|-| |||||...|+..+...|.+|.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l 133 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 133 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3588899875 8999999999999988777765
No 92
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=69.84 E-value=6.9 Score=36.88 Aligned_cols=47 Identities=30% Similarity=0.378 Sum_probs=36.0
Q ss_pred HHHHHHhCCCCCCCcEEEEeCCC--ChHHHHHHHHHHHHHcCCceEeee
Q 017061 81 NRLMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 81 ~~ll~~lg~p~~~~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..+++.+.....+..+|+|.|-| ||||+...|...+...|.++.+.+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 35666665444566799999986 599999999999988777886643
No 93
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=69.06 E-value=6.4 Score=35.24 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=27.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+..+|.|.|- .||||.+..|...|...|++++.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~ 60 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHIT 60 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeee
Confidence 3468999986 68999999999999999999433
No 94
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=68.79 E-value=3.7 Score=33.93 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=21.7
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 91 HSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 91 ~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
+..+.+|.|+|. .||||++.+|+.-| |+++
T Consensus 4 ~~~~~~i~l~G~~GsGKSTva~~La~~l---g~~~ 35 (168)
T 1zuh_A 4 HHHMQHLVLIGFMGSGKSSLAQELGLAL---KLEV 35 (168)
T ss_dssp ----CEEEEESCTTSSHHHHHHHHHHHH---TCCE
T ss_pred ccccceEEEECCCCCCHHHHHHHHHHHh---CCCE
Confidence 345678999997 89999999998776 5543
No 95
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=68.48 E-value=2.2 Score=36.67 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=28.2
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
+|.|.|- .||||.+..|...|...|++|..+.-|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~ 38 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPR 38 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 5677774 6999999999999998888887765443
No 96
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=68.37 E-value=3.1 Score=37.25 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.7
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRA 118 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~ 118 (378)
+..+|+|+|. .||||++.+|+..|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4468999996 7999999999987753
No 97
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=68.00 E-value=6.8 Score=34.37 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=29.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
-.+|.|.|- .||||.+..|..-|...|++|.+..-|
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p 43 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREP 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCC
Confidence 358999996 789999999999999999998654334
No 98
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=66.97 E-value=6.1 Score=36.50 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=28.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
..+|+|+|- .||||++..|+..+...|.+|.+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 458899985 689999999999999999998763
No 99
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=66.73 E-value=8.9 Score=38.38 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHhCCCCCCCcEEEEeCC------CChHHHHHHHHHHHHHcCCceEee
Q 017061 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGT------KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 74 ~~~L~r~~~ll~~lg~p~~~~~~I~VTGT------nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.+++- ++++.. .++.++|.||.+ -|||||+.-|+..|.+.|.||.+.
T Consensus 42 Kv~~~~----l~~~~~-~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi 95 (557)
T 3pzx_A 42 KISLDV----YRRLKD-KPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC 95 (557)
T ss_dssp EECHHH----HHHTTT-SCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EecHHH----hhhhhc-cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE
Confidence 355544 344432 345689999986 479999999999999999999764
No 100
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=66.58 E-value=9.6 Score=32.85 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=24.3
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHH--HHHcCCceEeee
Q 017061 92 SKFKTVHIAGTKGKGSTAAFLSSI--LRAEGYSVGCYT 127 (378)
Q Consensus 92 ~~~~~I~VTGTnGKtSTt~~l~~i--L~~~G~~vg~~t 127 (378)
.+-+++.++|.-|+|-|+.++..+ +..+|++|.+++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 344689999995544455555444 445899998875
No 101
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=66.52 E-value=8.6 Score=36.76 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=27.0
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHHcCCceEe
Q 017061 94 FKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 94 ~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~ 125 (378)
..+|+|.|-| |||||...|+..+...|.+|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l 190 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 190 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE
Confidence 3588999875 8999999999999987777755
No 102
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=65.96 E-value=7.6 Score=34.86 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=27.2
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
.++|.|+|- .||||.+..|+.-|...|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~ 37 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIV 37 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 467889985 79999999999999988987653
No 103
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=65.68 E-value=5.6 Score=35.08 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=23.2
Q ss_pred CCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 91 HSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 91 ~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
+..+..|++||. .||||++.+++. .|+.|
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~----~g~~v 36 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA----RGASL 36 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH----CCCcE
Confidence 445678999997 899999998875 47766
No 104
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=65.40 E-value=8.8 Score=33.69 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=27.9
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCC-ceEeeeCC
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGY-SVGCYTSP 129 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~-~vg~~tSp 129 (378)
++|.+.|. .||||.+..|..-|...|+ .|.+.--|
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep 41 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREP 41 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCC
Confidence 57888886 6799999999999999998 55443334
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=65.38 E-value=8.5 Score=32.04 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=25.5
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH-HcCCceEe
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILR-AEGYSVGC 125 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~-~~G~~vg~ 125 (378)
...+.+.|- .||||++..++..+. ..|+++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 357899996 579999999999987 67876543
No 106
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=64.12 E-value=4.9 Score=39.53 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 79 RMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 79 r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
-+..++..+..+.. .+.|+|- .|||++...+...|...|.+..+.++|
T Consensus 33 av~~~~~~i~~~~~---~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 33 AFNIVMKAIKEKKH---HVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp HHHHHHHHHHSSSC---EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred HHHHHHHHHhcCCC---EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 34444445443222 5555553 699999999998888888733333333
No 107
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=63.96 E-value=9.5 Score=35.43 Aligned_cols=34 Identities=29% Similarity=0.260 Sum_probs=28.0
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+..+|+|.|- .||||+...|+..+...|.+|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3458899886 479999999999999888788654
No 108
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=63.62 E-value=7.2 Score=33.07 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=24.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
++|.|+|. .||||.+..|+.-|...| ++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~ 36 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYL 36 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEE
Confidence 57999996 899999999999987766 5533
No 109
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=63.17 E-value=5.6 Score=35.29 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=21.3
Q ss_pred HHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 83 LMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 83 ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+|..+..--.+..+|+|+|- .||||++.+|+..|
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34433332334468999997 58999999999988
No 110
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=62.94 E-value=5 Score=34.17 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=20.3
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
.+|+|+|. .||||.+.+|+. + |+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g~~~ 28 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---GAYV 28 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---TCEE
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---CCEE
Confidence 47999997 589999999988 5 6655
No 111
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=61.76 E-value=8.6 Score=38.54 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=27.0
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHHcCCceEe
Q 017061 94 FKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 94 ~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~ 125 (378)
..+|+|.|-| ||||+...|+.++...|.+|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 4588999875 7999999999999988777755
No 112
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=61.71 E-value=9.3 Score=33.78 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=27.2
Q ss_pred CcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeee
Q 017061 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..++.++| -.||||++.-|+..|. .|++|.+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 44666665 5899999999999999 999998764
No 113
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=61.42 E-value=8 Score=37.89 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=28.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
..+|.|+|- .||||++..|+..|...|.+|.+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457888875 689999999999999999999774
No 114
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=60.98 E-value=8.7 Score=38.68 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=29.2
Q ss_pred CcEEEEeCC----CChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAGT----KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGT----nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.|.|-|||- =|||-|++-|..+|++.|++|.+.
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~ 39 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAV 39 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEE
Confidence 478999984 799999999999999999999664
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=60.03 E-value=22 Score=28.98 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=31.9
Q ss_pred HHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 82 RLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 82 ~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.++..+... .-..+.+.|- .|||+...++...+...|+++..+
T Consensus 26 ~~~~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 26 ELVYVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp HHHHHCCCC--CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhc--CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 444555443 4568999996 589999999999998888776543
No 116
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=58.88 E-value=8.9 Score=33.45 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=24.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHH--cCCceEee
Q 017061 95 KTVHIAGTKGKGSTAAFLSSILRA--EGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGTnGKtSTt~~l~~iL~~--~G~~vg~~ 126 (378)
..|+|-+-||||-|++.+...+++ +|++|.++
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 356666667788888888888887 57899876
No 117
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=58.74 E-value=7.3 Score=31.79 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=18.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
++|.|+|. .||||++..|+..|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899996 78999999988766
No 118
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=58.70 E-value=5.6 Score=39.31 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.8
Q ss_pred EEEEeCCCChHHH-HHHHHHHHHHc
Q 017061 96 TVHIAGTKGKGST-AAFLSSILRAE 119 (378)
Q Consensus 96 ~I~VTGTnGKtST-t~~l~~iL~~~ 119 (378)
+|+|| |||||++ +.+|...|++.
T Consensus 123 ~iaIs-T~Gksp~la~~ir~~ie~~ 146 (457)
T 1pjq_A 123 MVAVS-SGGTSPVLARLLREKLESL 146 (457)
T ss_dssp EEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCChHHHHHHHHHHHHh
Confidence 89999 9999999 89999988874
No 119
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=58.17 E-value=12 Score=32.12 Aligned_cols=33 Identities=21% Similarity=0.114 Sum_probs=27.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH-HcCCceEee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILR-AEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~-~~G~~vg~~ 126 (378)
..+|.|+|. .||||.+..|+..|. ..|+++..+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 368999996 899999999999998 778776543
No 120
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=58.15 E-value=5.1 Score=34.97 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
+.|.|-|- .||||.+.+|+.-|. .|++|....=|
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~eP 38 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREP 38 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEESS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeCC
Confidence 47888885 899999999999996 58888654334
No 121
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=58.01 E-value=7.3 Score=33.00 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
++|+|+|. .||||++.+|+..|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 38999997 79999999998866
No 122
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=57.99 E-value=11 Score=31.32 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.9
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCc
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~ 122 (378)
.+|.|+|. .||||.+..|+.-|...|++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 33 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 33 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcc
Confidence 47899996 89999999999999877743
No 123
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=57.77 E-value=20 Score=33.42 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCC---CCCCcEEEE----eCCCChHHHHHHHHHHHHHcCCceEeee
Q 017061 79 RMNRLMDRLGNP---HSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 79 r~~~ll~~lg~p---~~~~~~I~V----TGTnGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
++|+.+-..|.. ...+|+|.| .|-.|||-++.+|+..|+. +++++.+
T Consensus 18 ~~R~~ly~~~~~k~~~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~--~~~~ils 71 (315)
T 4ehx_A 18 NFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKD--KRVCILS 71 (315)
T ss_dssp HHHHHHHHTTCSCCBCCSSCEEEEEESBSSCCSHHHHHHHHHHHTTT--SCEEEEE
T ss_pred HHHHHHHhccccccccCCCCEEEECCEEeCCCChHHHHHHHHHHHhh--cCceEEe
Confidence 355555555432 235789998 5999999999999999974 4666553
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=57.70 E-value=10 Score=35.20 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=24.5
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+++++.|+|-| ||||....|.... .|+++++.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi 36 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVI 36 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEE
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEE
Confidence 57899999974 6888877776653 58888875
No 125
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=57.54 E-value=7.4 Score=35.64 Aligned_cols=37 Identities=16% Similarity=0.419 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHH
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLS 113 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~ 113 (378)
+++++.++..+|......+.|+|.|. .||||+...|.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~ 45 (315)
T 1jwy_B 7 INKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp HHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHH
Confidence 34566677777765567789999994 79998776553
No 126
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=57.07 E-value=14 Score=31.62 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=25.3
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
.++.|.|- .||||++..++..+...|.+|..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 58999997 569999999997776666677554
No 127
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=56.57 E-value=14 Score=32.73 Aligned_cols=36 Identities=14% Similarity=-0.033 Sum_probs=23.7
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
.+-.++.|||. .||||..--+..-+...|.+|.+++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 34568999999 5555555444445555789997764
No 128
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=55.97 E-value=13 Score=32.98 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=29.1
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHH-cCCceEe
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRA-EGYSVGC 125 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~-~G~~vg~ 125 (378)
+..+|.|.|. .||||.+..|+.-|.. .|++|..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 3468999996 7899999999999999 9999876
No 129
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=55.21 E-value=8.2 Score=36.07 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
|..++..+..-+. -.+|.+-| +.||||+...|..-|...|++|..+.-|.
T Consensus 73 L~~lQ~~~~~~~~----~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt 124 (304)
T 3czq_A 73 LVKVQFWMQATGK----RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPT 124 (304)
T ss_dssp HHHHHHHHHHHCC----CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCC
T ss_pred HHHHHHHHHHcCC----CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcC
Confidence 4455555555542 34788888 69999999999999999999998876664
No 130
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=55.16 E-value=11 Score=38.36 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=26.7
Q ss_pred cEEEEe---CCCChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VT---GTnGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.|.|+ |-.||||++..++..|.+.|++|.++
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllv 361 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT 361 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEE
Confidence 345554 45899999999999999999999886
No 131
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=54.87 E-value=21 Score=33.59 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=30.0
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..++|+|+|. .||||+...|...+...|.+++++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 4679999997 5899999999999988888887764
No 132
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=54.47 E-value=16 Score=32.32 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=28.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHc----CCceEeeeCC
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAE----GYSVGCYTSP 129 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~----G~~vg~~tSp 129 (378)
+-.+|.|.|- .||||.+..|+.-|... |++|.+.--|
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep 66 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP 66 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence 4468999996 67999999999999988 9988544334
No 133
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=54.21 E-value=5.2 Score=33.82 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.0
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHHH
Q 017061 95 KTVHIAGTK--GKGSTAAFLSSILRA 118 (378)
Q Consensus 95 ~~I~VTGTn--GKtSTt~~l~~iL~~ 118 (378)
++|+|.|-| ||||+..+|...+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 468899975 699999999998863
No 134
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=54.10 E-value=9 Score=32.48 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=20.1
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+.++|.|+|. .||||.+..|+.-|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999996 78999999887654
No 135
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=52.59 E-value=34 Score=34.46 Aligned_cols=48 Identities=25% Similarity=0.372 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCC-CCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 78 GRMNRLMDRLGNP-HSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 78 ~r~~~ll~~lg~p-~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
..+.+.+...-.| .....+|.++|. .||||++..|+.-|...|+++.+
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ 405 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTL 405 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 3344555554322 223457899886 78999999999999988877654
No 136
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=52.33 E-value=13 Score=30.61 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=20.8
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+..+|+|+|- .||||++.+|+..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 44568999997 78999999998876
No 137
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=52.21 E-value=9.4 Score=32.27 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=19.4
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHH
Q 017061 94 FKTVHIAGTK--GKGSTAAFLSSIL 116 (378)
Q Consensus 94 ~~~I~VTGTn--GKtSTt~~l~~iL 116 (378)
-.+|+|+|-| ||||+..+|...+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999975 7999999998875
No 138
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=51.39 E-value=13 Score=31.27 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=19.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSI 115 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~i 115 (378)
+.+.|.|+|. .||||++.+|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999997 6899999999876
No 139
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=51.05 E-value=21 Score=30.26 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=25.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
+..+|.|.|- .||||+..+|+..|...|..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~ 56 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLC 56 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceE
Confidence 3468999996 689999999999999778653
No 140
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=50.91 E-value=12 Score=30.17 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=19.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
++|.|+|- .||||.+..| +..|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~ 28 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKV 28 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcE
Confidence 47889996 7899999888 5667764
No 141
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=50.89 E-value=11 Score=32.25 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=21.1
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
+..+|+|+|- .||||++.+|+..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3468999997 579999999999885
No 142
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=50.79 E-value=9.8 Score=32.39 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=19.9
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
.+|+|+|. .||||++.+|+. .|+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~----lg~~~ 29 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD----LGVPL 29 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT----TTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHH----CCCcc
Confidence 47999997 689999999987 36543
No 143
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=50.48 E-value=12 Score=33.25 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 79 RMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 79 r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+.++.+.+..+..+...|.|+|- .||||.+.+|+.-+
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444333334467999996 79999999998655
No 144
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=50.11 E-value=9.8 Score=31.68 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
++|.|+|. .||||++.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899996 89999999998866
No 145
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=50.10 E-value=12 Score=31.65 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.1
Q ss_pred EEEEeCCCC--hHHHHHHHHHHHH
Q 017061 96 TVHIAGTKG--KGSTAAFLSSILR 117 (378)
Q Consensus 96 ~I~VTGTnG--KtSTt~~l~~iL~ 117 (378)
.++|.|-|| |||+..+|...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999876 9999999999984
No 146
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=49.98 E-value=8.6 Score=31.58 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=18.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+|+|+|. .||||++.+|+..|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 46999997 68999999998876
No 147
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=49.73 E-value=12 Score=32.27 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=18.9
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+|+|+|. .||||.+.+|+..|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57999997 67999999998765
No 148
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=49.55 E-value=17 Score=32.85 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=21.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCC
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGY 121 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~ 121 (378)
..|.+.|- .|||+++..++..+...|+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 35667764 6999999999999988765
No 149
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=49.49 E-value=13 Score=31.29 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=23.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
..|.|+|- .||||.+.+|+.-| .|+++..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~ 35 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI--PANTIKY 35 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS--CGGGEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--CCCceEE
Confidence 57999996 89999999998877 3666543
No 150
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=49.09 E-value=31 Score=30.39 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=26.1
Q ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHH--HcCCceEeee
Q 017061 91 HSKFKTVHIAGTKGKGSTAAFLSSILR--AEGYSVGCYT 127 (378)
Q Consensus 91 ~~~~~~I~VTGTnGKtSTt~~l~~iL~--~~G~~vg~~t 127 (378)
..+-.+..++|+-|||-|+.+|..+.+ .+|.+|.++.
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 344568889999666666666665554 5799998875
No 151
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=48.27 E-value=18 Score=31.74 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=26.8
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+..+|.|.|- .||||.+.+|+..|.. |+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 3468999996 7899999999999998 887744
No 152
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=48.22 E-value=12 Score=30.56 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
++|.|+|. .||||.+.+|+..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899996 89999999999876
No 153
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=48.06 E-value=22 Score=30.14 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=21.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
+++.++|. .||||...-+..-+...|.+|.+++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47889998 4555555334444445788887653
No 154
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=48.01 E-value=17 Score=32.40 Aligned_cols=26 Identities=19% Similarity=0.038 Sum_probs=22.7
Q ss_pred eCCCChHHHHHHHHHHHHHcCCceEe
Q 017061 100 AGTKGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 100 TGTnGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
.|-.||||++.-++..|...|++|.+
T Consensus 14 kgGvGKTt~a~~la~~l~~~G~~V~v 39 (228)
T 2r8r_A 14 APGVGKTYAMLQAAHAQLRQGVRVMA 39 (228)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCcHHHHHHHHHHHHHHCCCCEEE
Confidence 36799999999999999999999854
No 155
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=47.15 E-value=15 Score=30.71 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.4
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.++|.|+|- .||||.+.+|+.-|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899986 79999999998766
No 156
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=46.62 E-value=16 Score=30.17 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.4
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.++|.|+|. .||||.+..|+.-|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999997 79999999998766
No 157
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=45.90 E-value=14 Score=33.99 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=22.0
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHH
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
.+..+|+|+|- .||||++.+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34468999997 579999999999986
No 158
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=45.53 E-value=13 Score=33.79 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=21.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
+..+|+|+|. .||||++.+|+. .|+.+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~----lg~~~ 102 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN----LGAYI 102 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH----HTCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH----CCCcE
Confidence 3468999996 799999999984 37654
No 159
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=44.80 E-value=28 Score=31.50 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=26.2
Q ss_pred CcEEEEeCCC--ChHHHHHHHHHHHHHc-CCceEee
Q 017061 94 FKTVHIAGTK--GKGSTAAFLSSILRAE-GYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGTn--GKtSTt~~l~~iL~~~-G~~vg~~ 126 (378)
-.+++|+|-| ||||.+..|+..+... |.+|..+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3579999975 8999999999888765 8777654
No 160
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=44.79 E-value=16 Score=29.68 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.2
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.|.|+|. .||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 5888986 79999999998866
No 161
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=44.49 E-value=19 Score=30.90 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=20.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
.+|+|+|. .||||.+.+|+. .|+.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~----lg~~~ 31 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD----LGINV 31 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH----cCCEE
Confidence 58999997 799999999876 36654
No 162
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=44.39 E-value=11 Score=31.27 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=16.4
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
..+|.|+|. .||||.+..|+.-|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 458999997 89999999987654
No 163
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=44.28 E-value=15 Score=30.74 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
++|.|+|. .||||.+.+|+.-|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 57999996 79999999998876
No 164
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=44.26 E-value=49 Score=33.51 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=26.0
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcC-CceEe
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEG-YSVGC 125 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G-~~vg~ 125 (378)
..+|.|+|- .||||.+..|+..|...| +++..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~ 430 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSL 430 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEE
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEE
Confidence 357899985 789999999999999877 66543
No 165
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=44.19 E-value=18 Score=30.67 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.1
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+.+.|.|.|- .||||++..|+..|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3467889986 68999999999877
No 166
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=43.38 E-value=17 Score=30.39 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=18.5
Q ss_pred EEEEeCC--CChHHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
.|.|.|. .||||.+..|+.-|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 5888886 789999999998773
No 167
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=43.38 E-value=22 Score=30.03 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+|.|+|. .||||.+..|+.-|
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 47999996 89999999998876
No 168
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=43.26 E-value=11 Score=32.89 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=15.2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHH-HHHH
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLS-SILR 117 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~-~iL~ 117 (378)
+-.+|+|+|-| ||||+..+|. ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34689999986 7999999998 7764
No 169
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=43.19 E-value=37 Score=30.50 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=25.8
Q ss_pred HHHHhCCCCCCCcEEEEeCCC--ChHHHHHHHHHHHHHc
Q 017061 83 LMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRAE 119 (378)
Q Consensus 83 ll~~lg~p~~~~~~I~VTGTn--GKtSTt~~l~~iL~~~ 119 (378)
+++.+. -..-.+|+|+|-| ||||+..+|...+...
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 444444 2344689999974 8999999999988754
No 170
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=43.08 E-value=37 Score=33.84 Aligned_cols=47 Identities=26% Similarity=0.211 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHHhCCCCCCCcEEEEeCC------CChHHHHHHHHHHHHHcCCceEe
Q 017061 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGT------KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 74 ~~~L~r~~~ll~~lg~p~~~~~~I~VTGT------nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+.+++-+ +++.. .++-+.|.||+- -|||||+-=|.+.|...|+++..
T Consensus 28 Kv~~~~l----~~~~~-~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~ 80 (543)
T 3do6_A 28 KIDHRFL----KSLEN-HEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIV 80 (543)
T ss_dssp EECTTHH----HHTTT-SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EecHHHh----hhhhc-CCCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEE
Confidence 3555544 34432 235678999987 69999999999999999998854
No 171
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=42.41 E-value=18 Score=29.89 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+|.|+|. .||||.+..|+.-|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57999996 79999999988765
No 172
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=41.83 E-value=33 Score=28.79 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=26.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.|.|.|- .|||+.+..++..+...|+++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 56888886 689999999999988888777543
No 173
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=41.52 E-value=45 Score=31.68 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=24.6
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHc-CCceEe
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAE-GYSVGC 125 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~-G~~vg~ 125 (378)
.-.+|+|+|- .||||+...|...+... .-++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~ 170 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 170 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEE
Confidence 3458999996 56999999999988764 234433
No 174
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=41.40 E-value=20 Score=30.24 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=19.7
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.++|.|+|- .||||.+..|+..|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999997 68999999998877
No 175
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=41.39 E-value=21 Score=33.22 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=26.9
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHHHc-C-CceEee
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAE-G-YSVGCY 126 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~~~-G-~~vg~~ 126 (378)
.+..+|+|.|- .||||++.+|..+|... | .++++.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v 126 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLV 126 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEE
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEE
Confidence 34568999997 58999999999999864 4 356543
No 176
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=40.76 E-value=31 Score=32.74 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=24.8
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHHHc-CCceEee
Q 017061 95 KTVHIAGTK--GKGSTAAFLSSILRAE-GYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGTn--GKtSTt~~l~~iL~~~-G~~vg~~ 126 (378)
.+|+|+|-| ||||+...|...+... |.++...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI 158 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc
Confidence 489999975 5999999999888775 5555443
No 177
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=40.47 E-value=65 Score=27.21 Aligned_cols=35 Identities=6% Similarity=-0.049 Sum_probs=28.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
..+.+.|.|- .|||+++..++.-+...|+++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3467888985 7899999999999988888876544
No 178
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=40.33 E-value=22 Score=30.07 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+..+|+|+|- .||||++.+|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4468999997 57999999999887
No 179
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=40.22 E-value=46 Score=33.29 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHhCCC-CCCCcEEEEeCC--CChHHHHHHHHHHHHH-cC
Q 017061 75 FDLGRMNRLMDRLGNP-HSKFKTVHIAGT--KGKGSTAAFLSSILRA-EG 120 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p-~~~~~~I~VTGT--nGKtSTt~~l~~iL~~-~G 120 (378)
+.-..+.+.|..+-.| .++..+|.++|- .||||++..|+.-|.. .|
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g 424 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGG 424 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCS
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhc
Confidence 4444455555554322 234468999995 7999999999999986 54
No 180
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=38.99 E-value=18 Score=30.65 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=19.4
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
...+|+|+|. .||||.+.+|+..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999995 78999999988765
No 181
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=38.78 E-value=24 Score=32.67 Aligned_cols=53 Identities=15% Similarity=0.316 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhCCCCCCCc-EEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 77 LGRMNRLMDRLGNPHSKFK-TVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~-~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
|..++..|...|.-..+.+ +|.+-| +.|||+|...|..-|...|++|..+..|
T Consensus 57 L~~lQ~~l~~~~~~~~~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~P 112 (289)
T 3rhf_A 57 LAELQEKLFAEGKFGNPKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAP 112 (289)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSC
T ss_pred HHHHHHHHHhcCCccCCCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCC
Confidence 5556666655552111334 567777 7999999999999999999999887665
No 182
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=38.35 E-value=26 Score=35.06 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=39.3
Q ss_pred hHHHHHHHHH-hCCCCCCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 77 LGRMNRLMDR-LGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 77 L~r~~~ll~~-lg~p~~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
|..++..+.. -+. ..+|.+-| +.|||++...|..-|...|++|..+..|.
T Consensus 29 L~~lQ~~~~~~~~~----~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt 81 (500)
T 3czp_A 29 LLEAQFELKQQARF----PVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPS 81 (500)
T ss_dssp HHHHHHHHHHHCCC----CEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCC
T ss_pred HHHHHHHHHhcCCC----CEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCC
Confidence 5556666665 442 24688888 69999999999999999999998887774
No 183
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=38.16 E-value=22 Score=29.32 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=18.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
..|.++|. .||||.+.+|+.-|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 47899986 78999999998765
No 184
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=38.16 E-value=20 Score=29.46 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+.|.|+|. .||||++..|+.-|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46888886 78999999998766
No 185
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=38.11 E-value=20 Score=32.12 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=20.1
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
.+|++||. .||||++.++..- .|+++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence 57999996 8999999887543 47654
No 186
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=37.88 E-value=83 Score=30.50 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHH-cCCceEeee
Q 017061 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRA-EGYSVGCYT 127 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~-~G~~vg~~t 127 (378)
.++..+..++ .|.+.. .++.|+|- .||||.+.-++.-+.. .|.+|..++
T Consensus 188 tG~~~LD~~~--gGl~~G--~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 188 TGFTELDRMT--SGFQRS--DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CSCHHHHHHH--SSBCTT--CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCcHHHHhhc--CCCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3455666666 355433 57888885 5999998777765554 688887654
No 187
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=37.80 E-value=27 Score=28.81 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.5
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+.+.|.|+|. .||||.+..|+.-|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3467889996 79999999998766
No 188
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=36.60 E-value=82 Score=30.64 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeC--CCChHHHHHHHHHHHHHcCCceEeee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
++..+.+++. |.+.. .++.|+| ..|||+.+.-++.-....|.+|..|+
T Consensus 183 G~~~LD~~lg--Gl~~G--~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 183 GFTELDRMTY--GYKRR--NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SCHHHHHHHS--SBCSS--CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcHHHHhhcC--CCCCC--cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 4555556662 55433 4677777 48899998666555544588887653
No 189
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=36.47 E-value=26 Score=29.96 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLSSILR 117 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~~iL~ 117 (378)
+.++|+|.|-+ ||||++.+|...+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34689999975 69999999887664
No 190
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=36.16 E-value=21 Score=29.27 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
++|.|+|- .||||++..|+.-|.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47889996 899999999987763
No 191
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=36.09 E-value=28 Score=29.81 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=19.2
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
...|.|.|- .||||.+..|+.-|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357888886 79999999998866
No 192
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=35.79 E-value=27 Score=28.91 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=18.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
++|.|+|. .||||.+..|+.-|
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 57889996 89999999998766
No 193
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=35.79 E-value=30 Score=30.13 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=19.6
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+..+|+|+|. .||||++.+|+..|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3458999997 58999999998765
No 194
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=35.62 E-value=94 Score=29.15 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
++..+.+++. |.+.. .+|.|+|- .|||+.+.-++.-+...|.+|..|+
T Consensus 32 G~~~LD~~~g--Gl~~G--~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 32 GFVQLDNYTS--GFNKG--SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SCHHHHHHHC--SBCTT--CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CChHHHHHhc--CCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4555555553 55433 46778874 7899998777776666888887653
No 195
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=35.57 E-value=25 Score=35.57 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=17.4
Q ss_pred CCCcEEEEeCCCChHHHH-HHHHHHHHHcC
Q 017061 92 SKFKTVHIAGTKGKGSTA-AFLSSILRAEG 120 (378)
Q Consensus 92 ~~~~~I~VTGTnGKtSTt-~~l~~iL~~~G 120 (378)
..+-+++-+|| |||+|. .-+++++...|
T Consensus 23 ~~~lV~a~aGs-GKT~~l~~ri~~l~~~~~ 51 (647)
T 3lfu_A 23 SNLLVLAGAGS-GKTRVLVHRIAWLMSVEN 51 (647)
T ss_dssp SCEEEEECTTS-CHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEECCCC-CHHHHHHHHHHHHHHhCC
Confidence 34445566665 888884 45666766544
No 196
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=35.15 E-value=20 Score=30.06 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.0
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+|+|+|- .||||++.+|...+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 58999997 58999999998876
No 197
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=34.98 E-value=45 Score=34.30 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=31.4
Q ss_pred HHhCCCC-CCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 85 DRLGNPH-SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 85 ~~lg~p~-~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+.+|++. .+..+|.++|. .||||.+..|+..|.+.|+++..
T Consensus 42 ~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~ 85 (630)
T 1x6v_B 42 QVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT 85 (630)
T ss_dssp HHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 3456422 24468999996 89999999999999988987644
No 198
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=34.84 E-value=90 Score=28.57 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
++..+..++ -|.+.. .++.|+|- .|||+.+.-++.-+...|.+|..|+
T Consensus 54 G~~~LD~~l--gGl~~G--~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 54 GFTELDRMT--YGYKRR--NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SCHHHHHHH--SSBCTT--CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ChHHHHhhc--CCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 455566666 455433 56888885 8899988777655555677776553
No 199
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=33.70 E-value=18 Score=29.01 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCc
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~ 122 (378)
+.++.+.++.+... . .-|.|.|- .|||+.+..|.......+..
T Consensus 10 ~~~~~~~~~~~a~~--~-~~vll~G~~GtGKt~lA~~i~~~~~~~~~~ 54 (145)
T 3n70_A 10 INQYRRRLQQLSET--D-IAVWLYGAPGTGRMTGARYLHQFGRNAQGE 54 (145)
T ss_dssp HHHHHHHHHHHTTC--C-SCEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred HHHHHHHHHHHhCC--C-CCEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence 55566666665432 2 23667774 68999999888765544443
No 200
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=33.48 E-value=78 Score=28.96 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=28.1
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH-HcCCceEeeeCC
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILR-AEGYSVGCYTSP 129 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~-~~G~~vg~~tSp 129 (378)
.+.+-+.|. .|||+.+..|+.-+. ..|++|..++.|
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 356777875 799999999999988 889888654433
No 201
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=33.28 E-value=33 Score=28.24 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.0
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+.|.++|- .||||++..|+.-|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357888884 89999999998766
No 202
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=33.21 E-value=27 Score=29.75 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLSSILR 117 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~~iL~ 117 (378)
+-.+++|.|-| ||||+..+|..++.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44689999976 79999999999884
No 203
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=32.67 E-value=1.2e+02 Score=21.39 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCc
Q 017061 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~ 122 (378)
+.++.+...+..++.+ ++-++|.+..+ |. .+...+..|++.||+
T Consensus 24 ip~~~l~~~~~~l~~~-~~~~ivv~C~~-g~--rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 24 IPLKEVKERIATAVPD-KNDTVKVYCNA-GR--QSGQAKEILSEMGYT 67 (85)
T ss_dssp CCHHHHHHHHHHHCCC-TTSEEEEEESS-SH--HHHHHHHHHHHTTCS
T ss_pred cCHHHHHHHHHHhCCC-CCCcEEEEcCC-Cc--hHHHHHHHHHHcCCC
Confidence 5577888888888643 34467777765 53 566778899999995
No 204
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=32.31 E-value=1.2e+02 Score=24.07 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHH
Q 017061 78 GRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRA 118 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~ 118 (378)
+.++++.+.+... ..+.|.|+|- .|||+.+..++..+..
T Consensus 29 ~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 29 EEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3466666666542 3356788885 7999999999888876
No 205
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=31.99 E-value=39 Score=30.19 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCC-CCCCCcEEEEeCC--CChHHHHHHH
Q 017061 78 GRMNRLMDRLGN-PHSKFKTVHIAGT--KGKGSTAAFL 112 (378)
Q Consensus 78 ~r~~~ll~~lg~-p~~~~~~I~VTGT--nGKtSTt~~l 112 (378)
++++..|..+|. |....+.|+|.|. .||||....|
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l 46 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENF 46 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHH
Confidence 445555555554 3456678889884 7999876554
No 206
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=31.11 E-value=41 Score=28.47 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=24.1
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+.+.|.|+|- .||||+...+..-+... ++++..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i 63 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAM 63 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEE
Confidence 5678888885 89999887776665443 677664
No 207
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=31.09 E-value=31 Score=29.31 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=18.9
Q ss_pred cEEEEeCCC--ChHHHHHHHHHHHH
Q 017061 95 KTVHIAGTK--GKGSTAAFLSSILR 117 (378)
Q Consensus 95 ~~I~VTGTn--GKtSTt~~l~~iL~ 117 (378)
+.++|.|-| ||||+..+|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 468888864 89999999988774
No 208
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=30.73 E-value=75 Score=28.86 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=29.2
Q ss_pred HHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEe
Q 017061 84 MDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 84 l~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
.+.+..|....+.+.|.|- .|||+.+..++..+...|.++..
T Consensus 27 ~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~ 70 (324)
T 1l8q_A 27 KEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIY 70 (324)
T ss_dssp HHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 3333344434556788885 68999999999988877776643
No 209
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=30.60 E-value=39 Score=29.58 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=19.1
Q ss_pred CChHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.++.-.....+.++. +..+|+|.|- .||||.+.+|+.-|
T Consensus 11 ~~~~~~~~~~~~~~~---~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 11 VDLGTENLYFQSMAS---KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp ------------------CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhcC---CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 455556666666653 3468999997 57999999988665
No 210
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=30.41 E-value=56 Score=28.76 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=20.5
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHHHH
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
....+|.++|- .||||++..|+..|.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34468999996 789999999987663
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=29.93 E-value=37 Score=28.80 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=16.9
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.|.|+|- .||||.+.+|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 4778885 79999999997655
No 212
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=29.88 E-value=54 Score=33.15 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=26.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
+++.|+|- .|||||...|...|...|++|.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 57778875 689999999999999999988653
No 213
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=29.69 E-value=33 Score=26.38 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=25.5
Q ss_pred hhhHhhcC---CCHHHHHHHHhccccCCC-eEEEcCCCChhH
Q 017061 227 EEHTAALG---GSLETIAMAKSGIIKYGR-PLVLGGPFLPHI 264 (378)
Q Consensus 227 ~DHld~lG---~tle~ia~~Ka~Iik~~~-~~V~~~~d~~~~ 264 (378)
.||+.||+ .++|+|.++|..-++.+. .+-+. |.|+.
T Consensus 51 aDnLgwF~d~~~~IEdil~~kGe~V~~~~~d~~~e--d~pe~ 90 (100)
T 2e2z_A 51 ADHLKIFHDHHVTVEQLMKANGEQVSQDVGDLEFE--DIPDS 90 (100)
T ss_dssp CCSSCSGGGSCCCHHHHHHHHCCCCSSSSCEEEES--SCCHH
T ss_pred ehhhhhhccCCCCHHHHHHHcCCEeeecCCCccHh--hChHH
Confidence 57777775 489999999999887643 34443 56654
No 214
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=29.26 E-value=36 Score=30.10 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.3
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+..+|+|+|- .||||++.+|+.-|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999996 57999999998554
No 215
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=28.24 E-value=19 Score=35.99 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=31.0
Q ss_pred cEEEEeC--CCChHHHHHHHHHHHHHcCCceEeeeCCc
Q 017061 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (378)
Q Consensus 95 ~~I~VTG--TnGKtSTt~~l~~iL~~~G~~vg~~tSp~ 130 (378)
.+|.+-| +.|||++...|..-|...|++|..+..|.
T Consensus 301 vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt 338 (500)
T 3czp_A 301 LVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPT 338 (500)
T ss_dssp EEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCC
T ss_pred EEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCC
Confidence 3577778 69999999999999999999998876663
No 216
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=28.21 E-value=37 Score=27.56 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.8
Q ss_pred cEEEEeCC--CChHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSS 114 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~ 114 (378)
++|.|+|. .||||.+..|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 46888986 799999998876
No 217
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=27.29 E-value=65 Score=28.71 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=26.2
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHH--cCCceEeee
Q 017061 94 FKTVHIAGTKGKGSTAAFLSSILRA--EGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGTnGKtSTt~~l~~iL~~--~G~~vg~~t 127 (378)
..+.-++|.=|||-|+++|..+.+. +|++|.++.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3678899997777777777777665 678998775
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=27.22 E-value=98 Score=27.58 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=31.6
Q ss_pred hHHHHHHHHH----hCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 77 LGRMNRLMDR----LGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 77 L~r~~~ll~~----lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
++.+...+.. +..|.+....+.+.|- .|||+++..|+..+...+.++
T Consensus 26 ~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 26 IRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp HHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred HHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 3444444444 3445444457889986 689999999999987655443
No 219
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=26.74 E-value=50 Score=28.07 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=19.2
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCce
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~v 123 (378)
.|.|+|. .||||.+.+|+.-| |+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~ 28 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---GIPQ 28 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeE
Confidence 3677775 79999999998866 6543
No 220
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=26.72 E-value=47 Score=27.35 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHH
Q 017061 93 KFKTVHIAGTK--GKGSTAAFLSSIL 116 (378)
Q Consensus 93 ~~~~I~VTGTn--GKtSTt~~l~~iL 116 (378)
.-.++++.|-| ||||...+|..++
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44689999975 6999999999988
No 221
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=26.70 E-value=96 Score=24.71 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=26.0
Q ss_pred CCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHH
Q 017061 101 GTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (378)
Q Consensus 101 GTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (378)
|.-+=.-=..+++.+|+.+|++|.- +|..++.+++.+.
T Consensus 12 ~~d~HdiG~~~v~~~l~~~G~~Vi~-----------------lG~~~p~e~~v~~ 49 (137)
T 1ccw_A 12 GSDCHAVGNKILDHAFTNAGFNVVN-----------------IGVLSPQELFIKA 49 (137)
T ss_dssp TTCCCCHHHHHHHHHHHHTTCEEEE-----------------EEEEECHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHCCCEEEE-----------------CCCCCCHHHHHHH
Confidence 4433334457999999999999852 1677887766543
No 222
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=26.38 E-value=64 Score=28.46 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=23.7
Q ss_pred CCCcEEEEeCCCChHHHHHHHHHH--HHHcCCceEeeeC
Q 017061 92 SKFKTVHIAGTKGKGSTAAFLSSI--LRAEGYSVGCYTS 128 (378)
Q Consensus 92 ~~~~~I~VTGTnGKtSTt~~l~~i--L~~~G~~vg~~tS 128 (378)
.+-.+..|||.-|+|-|+.+|..+ +..+|.+|.+++.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 345688999985555555555544 3457899977643
No 223
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=26.03 E-value=41 Score=30.10 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=19.6
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
-++|+|+|- .||||++.+|+..|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 357999996 68999999999877
No 224
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=25.97 E-value=37 Score=27.91 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.7
Q ss_pred EEEEeCCC--ChHHHHHHHHHHHH
Q 017061 96 TVHIAGTK--GKGSTAAFLSSILR 117 (378)
Q Consensus 96 ~I~VTGTn--GKtSTt~~l~~iL~ 117 (378)
+.+|+|-| ||||....|..+|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 78899976 59999999988875
No 225
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=25.90 E-value=45 Score=28.54 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=17.9
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
..|.|.|. .||||.+..|+.-|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45777775 699999999988763
No 226
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=25.70 E-value=1.3e+02 Score=24.75 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=26.9
Q ss_pred CCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHH
Q 017061 101 GTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNC 154 (378)
Q Consensus 101 GTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~ 154 (378)
|..+=.-=..+++.+|+.+|++|.. +|..++.+++.+
T Consensus 27 ~gd~HdiG~~~va~~l~~~G~eVi~-----------------lG~~~p~e~lv~ 63 (161)
T 2yxb_A 27 GLDGHDRGAKVVARALRDAGFEVVY-----------------TGLRQTPEQVAM 63 (161)
T ss_dssp SSSSCCHHHHHHHHHHHHTTCEEEC-----------------CCSBCCHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHCCCEEEE-----------------CCCCCCHHHHHH
Confidence 5555555568999999999999843 277788776654
No 227
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=25.12 E-value=38 Score=29.17 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=18.4
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
...|.|.|. .||||.+..|+.-|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357888885 89999999988754
No 228
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=24.92 E-value=3e+02 Score=24.77 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=40.4
Q ss_pred CCCcEEEEeCCCCh--HHHHHHHHHHHHHcC-CceEeeeCC-----------cccccceEEeeCCCCcccCHHHHH
Q 017061 92 SKFKTVHIAGTKGK--GSTAAFLSSILRAEG-YSVGCYTSP-----------HIKTIRERMNVGRLNRPVSAKALN 153 (378)
Q Consensus 92 ~~~~~I~VTGTnGK--tSTt~~l~~iL~~~G-~~vg~~tSp-----------~l~~~~eri~in~~G~~is~~~~~ 153 (378)
++++++.|+|+++= -..+.+|..+|++.| +.|-...+| .|..|.--| .+..+..++++...
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV-~~~~~~~l~~~~~~ 77 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVV-LDYNGDSWPEETNR 77 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEE-ECCCSSCCCHHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEE-EeCCCCcCCHHHHH
Confidence 56789999998775 455689999999998 888776653 344443333 44335566655433
No 229
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=24.80 E-value=60 Score=28.05 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=18.9
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
..|.|.|. .||||.+.+|+.-|
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57888886 89999999999876
No 230
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=24.69 E-value=3e+02 Score=26.68 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=52.1
Q ss_pred HHHHHHHHhCC-----CCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHH
Q 017061 79 RMNRLMDRLGN-----PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALN 153 (378)
Q Consensus 79 r~~~ll~~lg~-----p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~ 153 (378)
++.+.|+.++. |....++|.+.=..+..-...-+...|.+.|.-+..++.|....-...+|+. ++...+.+++.
T Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRis-v~~~~t~edid 431 (502)
T 3hbx_A 353 VLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVV-IREDFSRTLAE 431 (502)
T ss_dssp HHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEE-CCTTCCHHHHH
T ss_pred HHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEE-eCCCCCHHHHH
Confidence 45555555551 1135566665422222222345667778889877666666432223445554 46678888888
Q ss_pred HHHHHHHHHHHHHHh
Q 017061 154 CLFHKIKGVLDEAIR 168 (378)
Q Consensus 154 ~~~~~~~~~~~~~~~ 168 (378)
.+++.++..++++.+
T Consensus 432 ~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 432 RLVIDIEKVMRELDE 446 (502)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888877766543
No 231
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=24.61 E-value=75 Score=30.73 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=26.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
.-.+|+|+|- .|||||...|...+....-++.+...|
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 4458999997 579999999988886544455444433
No 232
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=24.57 E-value=47 Score=28.39 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=18.6
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
..|.|.|. .||||.+..|+.-|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 46888885 89999999999877
No 233
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=24.41 E-value=40 Score=26.83 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHH
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSI 115 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~i 115 (378)
+.++++.++.+.... .-|.+.|- .|||+.+..|...
T Consensus 13 ~~~l~~~~~~~~~~~---~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 13 IQEMNREVEAAAKRT---SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp HHHHHHHHHHHHTCS---SCEEEEEETTCCHHHHHGGGCCT
T ss_pred HHHHHHHHHHHhCCC---CcEEEECCCCccHHHHHHHHHHh
Confidence 455566655544322 23666774 5899888777654
No 234
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=24.41 E-value=42 Score=28.50 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=16.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.|.|+|- .||||.+.+|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 3778885 79999999987543
No 235
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=24.33 E-value=1.7e+02 Score=23.23 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHH
Q 017061 79 RMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRA 118 (378)
Q Consensus 79 r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~ 118 (378)
.++.+++.+... ..+.|.|+|- .|||+++..++..+..
T Consensus 30 ~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 30 EIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456666666542 3356788886 6899999999888866
No 236
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=24.32 E-value=1.1e+02 Score=23.58 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEe
Q 017061 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (378)
Q Consensus 75 ~~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~ 125 (378)
+.++.+...+..+. ++-++|.++. .|..+.+...+.+|+..|++|..
T Consensus 56 ip~~~l~~~~~~l~---~~~~ivvyC~-~g~r~~s~~a~~~L~~~G~~v~~ 102 (124)
T 3flh_A 56 MPAKDLATRIGELD---PAKTYVVYDW-TGGTTLGKTALLVLLSAGFEAYE 102 (124)
T ss_dssp CCHHHHHHHGGGSC---TTSEEEEECS-SSSCSHHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHhcCC---CCCeEEEEeC-CCCchHHHHHHHHHHHcCCeEEE
Confidence 45666665555442 3445666655 46655567788899999998543
No 237
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=24.27 E-value=90 Score=29.25 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
...+..+|..=|.| .-.++.|.|- .||||.+..+..-+...|.+|..++..
T Consensus 46 ~~~LD~~Lg~GGl~--~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 46 SISLDVALGIGGLP--RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp CHHHHHHTSSSSEE--TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CHHHHHHhccCCcc--CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44444444312333 3457888885 599999888877666778888776554
No 238
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=23.90 E-value=54 Score=28.23 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=17.6
Q ss_pred EEEEeCC--CChHHHHHHHHHHH
Q 017061 96 TVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.|.|+|. .||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 4778885 79999999998876
No 239
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=23.43 E-value=54 Score=28.70 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=21.5
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCc
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~ 122 (378)
..+|.|+|. .||||++..|+.-| |++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l---g~~ 41 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL---GIH 41 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH---TCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc---CCc
Confidence 468999996 78999999998776 555
No 240
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=23.38 E-value=71 Score=31.93 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcC
Q 017061 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEG 120 (378)
Q Consensus 76 ~L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G 120 (378)
..+-+..+++.+.....+.-+++=|| .|||-++..+..-|...|
T Consensus 183 Q~~ai~~~~~~~~~~~~~~ll~~~TG-sGKT~~~~~~~~~l~~~~ 226 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGKKRSLITMATG-TGKTVVAFQISWKLWSAR 226 (590)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTT-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCceEEEecCC-CChHHHHHHHHHHHHhcc
Confidence 35667777776643333332334444 599999766666555543
No 241
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=23.11 E-value=3.8e+02 Score=23.38 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEeCCCChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 78 GRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 78 ~r~~~ll~~lg~p~~~~~~I~VTGTnGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
+-+...++.+| .+.|+|-+|.++ .++.+...-|++.|+.|....+.
T Consensus 106 ~A~~~al~~~g-----~~rvglltpy~~-~~~~~~~~~l~~~Giev~~~~~~ 151 (240)
T 3ixl_A 106 TAVLNGLRALG-----VRRVALATAYID-DVNERLAAFLAEESLVPTGCRSL 151 (240)
T ss_dssp HHHHHHHHHTT-----CSEEEEEESSCH-HHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHhC-----CCEEEEEeCChH-HHHHHHHHHHHHCCCEEeccccC
Confidence 34445555554 367889888653 33566677888899988654443
No 242
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=23.05 E-value=52 Score=27.17 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.6
Q ss_pred cEEEEeCC--CChHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSS 114 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~ 114 (378)
.+|+|.|- .||||+..+|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 46889997 579999999975
No 243
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=22.83 E-value=48 Score=28.69 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.2
Q ss_pred CCCcEEEEeCC--CChHHHHHHHHHH
Q 017061 92 SKFKTVHIAGT--KGKGSTAAFLSSI 115 (378)
Q Consensus 92 ~~~~~I~VTGT--nGKtSTt~~l~~i 115 (378)
.+-.+|+|.|- .||||.+.+|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45568999997 5799998888775
No 244
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=22.80 E-value=46 Score=28.27 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=18.2
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+|.|+|. .||||.+.+|+..|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899995 79999999988755
No 245
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=22.46 E-value=2.3e+02 Score=26.70 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCCCChHH---HHHHHHHHHHHcCCceEee
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGS---TAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGTnGKtS---Tt~~l~~iL~~~G~~vg~~ 126 (378)
++++...++.+|. -+++.||+.+=.-. ...-+...|+++|+.+..|
T Consensus 21 ~~~l~~~l~~~g~----~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~ 69 (387)
T 3bfj_A 21 ISVVGERCQLLGG----KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIF 69 (387)
T ss_dssp GGGHHHHHHHTTC----SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCC----CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEE
Confidence 6778888888862 26788887654433 5677788888899887654
No 246
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=22.32 E-value=1.1e+02 Score=28.72 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=27.4
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHHHcCCceEeeeCC
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~tSp 129 (378)
.++.|+|- .||||.+.-++.-+...|.+|..++..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 57888874 899999988777777778888776653
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=21.89 E-value=55 Score=26.95 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=17.7
Q ss_pred CcEEEEeCC--CChHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSI 115 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~i 115 (378)
-.+|+|.|- .||||++.+|+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357899996 6799999988765
No 248
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=21.60 E-value=1.1e+02 Score=25.99 Aligned_cols=33 Identities=15% Similarity=-0.085 Sum_probs=22.1
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~ 126 (378)
-.++.|+|- .||||.+.-++.-+...|.+|..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 357888886 679999665544444557777654
No 249
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=21.39 E-value=95 Score=27.57 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=20.2
Q ss_pred CCcEEEEeCC--CChHHHHHHHHHHHHH
Q 017061 93 KFKTVHIAGT--KGKGSTAAFLSSILRA 118 (378)
Q Consensus 93 ~~~~I~VTGT--nGKtSTt~~l~~iL~~ 118 (378)
.-.++.|.|- .||||.+..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999986 5899999888876653
No 250
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=21.15 E-value=2e+02 Score=23.18 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=39.3
Q ss_pred HHHHHHhCCCCCCCcEEEEeCCCChHH-HHHHHHHHHHHcCCceEeeeCCcccccceEEeeCCCCcccCHHHHHHHHHHH
Q 017061 81 NRLMDRLGNPHSKFKTVHIAGTKGKGS-TAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKI 159 (378)
Q Consensus 81 ~~ll~~lg~p~~~~~~I~VTGTnGKtS-Tt~~l~~iL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~~ 159 (378)
..++..|.....+-+.+++=||-|-+- ....+...|+..|.++.. .| +.+. |.| +++++..+.+-.
T Consensus 74 ~~~l~~l~~~~~~~k~va~fgs~g~~~~a~~~l~~~l~~~G~~~v~--~~--------~~~~--~~P-~~~dl~~~~~~g 140 (159)
T 3fni_A 74 QGALSTILGSVNEKQAVGIFETGGGDDEPIDPLLSKFRNLGLTTAF--PA--------IRIK--QTP-TENTYKLCEEAG 140 (159)
T ss_dssp HHHHHHHHHHCCTTSEEEEECCSSSCBCCHHHHHHHHHHTTCEESS--SC--------BCCS--SCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCEEEEEEcCCCCcHHHHHHHHHHHHCCCEEec--Cc--------eEEE--eCC-CHHHHHHHHHHH
Confidence 455555422122446788878876533 567889999999987621 11 2455 665 455555554433
Q ss_pred HH
Q 017061 160 KG 161 (378)
Q Consensus 160 ~~ 161 (378)
+.
T Consensus 141 ~~ 142 (159)
T 3fni_A 141 TD 142 (159)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 251
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=21.15 E-value=63 Score=30.12 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCC-CCCCCcEEEEeCC--CChHHHHHHH
Q 017061 78 GRMNRLMDRLGN-PHSKFKTVHIAGT--KGKGSTAAFL 112 (378)
Q Consensus 78 ~r~~~ll~~lg~-p~~~~~~I~VTGT--nGKtSTt~~l 112 (378)
+++...|..+|. +..+.+.|+|.|. .||||....|
T Consensus 14 ~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L 51 (353)
T 2x2e_A 14 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENF 51 (353)
T ss_dssp HHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHH
Confidence 445555666664 2456788999994 8999886665
No 252
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=20.94 E-value=1.3e+02 Score=25.83 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=17.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
+.|.+.|- .|||+++..++.-+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 45788885 78999999888755
No 253
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=20.86 E-value=1.2e+02 Score=26.58 Aligned_cols=37 Identities=16% Similarity=0.391 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEeCC--CChHHHHHHHHHHHH
Q 017061 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 77 L~r~~~ll~~lg~p~~~~~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
+++++.+++. .|.+ ..+.|.|. .||||++..|+..|.
T Consensus 45 ~~~l~~~~~~--iPkk--n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKG--TPKK--NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHT--CTTC--SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc--CCcc--cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5566666653 3432 35888886 899999988888873
No 254
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=20.86 E-value=50 Score=28.69 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=19.5
Q ss_pred cEEEEeCC--CChHHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
..|.|.|. .||||.+..|+.-|.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 57888885 799999999998875
No 255
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=20.82 E-value=68 Score=28.35 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=17.7
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
++|.|.|- .||||.+..|+.-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 46888885 78999999888655
No 256
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=20.78 E-value=1.1e+02 Score=25.15 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=21.3
Q ss_pred EEEEeCC--CChHHHHHHHHHHHHHcCCc
Q 017061 96 TVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (378)
Q Consensus 96 ~I~VTGT--nGKtSTt~~l~~iL~~~G~~ 122 (378)
.+.|+|- .|||+++..++.-+...++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 68 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWR 68 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccc
Confidence 4888885 68999999998888665544
No 257
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=20.70 E-value=73 Score=28.15 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=18.8
Q ss_pred cEEEEeCC--CChHHHHHHHHHHH
Q 017061 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (378)
Q Consensus 95 ~~I~VTGT--nGKtSTt~~l~~iL 116 (378)
.+|.|+|- .||||++..|+.-|
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57999996 79999999998766
No 258
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=20.42 E-value=1.2e+02 Score=25.31 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=23.3
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHHHcCCceEeee
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~~~G~~vg~~t 127 (378)
-.++.|+|- .||||.+..++. ..|.+|..++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 357899986 679999988887 4577776543
No 259
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=20.18 E-value=2.3e+02 Score=28.23 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=46.0
Q ss_pred CCEEEEeeCCCCCc------ccccccccCCCcEEEEcc-CChhhHhhcC---------CCHHHHHHHH-------hcccc
Q 017061 193 VDIAVIEAGLGGAR------DATNIISSSGLAASVITT-IGEEHTAALG---------GSLETIAMAK-------SGIIK 249 (378)
Q Consensus 193 ~d~~VlEvg~gg~~------D~t~~~~~~~p~vaVITN-I~~DHld~lG---------~tle~ia~~K-------a~Iik 249 (378)
.||+|-|.|-|.-+ |..-......|+++||.- |. -+.++| +.++.+.+-. ..+-+
T Consensus 281 aDyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvR--ALK~hGG~~~~~l~~enl~al~~G~~NL~kHIen~~~ 358 (543)
T 3do6_A 281 SEYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVR--ALKYHGGANLKNIHEENLEALKEGFKNLRVHVENLRK 358 (543)
T ss_dssp CSEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHH--HHHHHTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEecccccccchHhhcCccccccCCCCCEEEEEeehH--HHHhcCCCChhhcCccCHHHHHHHHHHHHHHHHHHHH
Confidence 59999999987653 222222345577776643 21 122222 3344332211 11113
Q ss_pred CCCeEEE--c--CCCChhHHHHHHHHHHhhCCeEEE
Q 017061 250 YGRPLVL--G--GPFLPHIEHILRDEASLMCSQVVS 281 (378)
Q Consensus 250 ~~~~~V~--~--~~d~~~~~~vl~~~a~~~~~~~~~ 281 (378)
-+.|+|+ | ..|.++-.+.+++.|++.++++..
T Consensus 359 fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~~~ 394 (543)
T 3do6_A 359 FNLPVVVALNRFSTDTEKEIAYVVKECEKLGVRVAV 394 (543)
T ss_dssp TTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCEEEE
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4666655 3 122233345788899999987754
No 260
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=20.12 E-value=43 Score=29.18 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=19.9
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHH
Q 017061 94 FKTVHIAGT--KGKGSTAAFLSSILR 117 (378)
Q Consensus 94 ~~~I~VTGT--nGKtSTt~~l~~iL~ 117 (378)
..+|+|||= .||++++..+...+.
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g 36 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLG 36 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcC
Confidence 359999995 899999999887653
Done!