Query 017062
Match_columns 378
No_of_seqs 174 out of 1157
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:16:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 2.7E-12 5.8E-17 96.0 5.0 53 192-244 4-59 (60)
2 smart00353 HLH helix loop heli 99.3 7.9E-12 1.7E-16 91.8 6.1 49 197-245 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 3.8E-12 8.3E-17 94.7 3.9 49 193-241 2-55 (55)
4 KOG1318 Helix loop helix trans 98.8 6.7E-09 1.4E-13 105.9 5.3 58 189-246 230-291 (411)
5 cd04927 ACT_ACR-like_2 Second 98.6 4.3E-07 9.4E-12 72.1 9.0 71 305-377 1-75 (76)
6 KOG1319 bHLHZip transcription 98.6 4E-08 8.6E-13 90.7 3.3 65 188-252 58-129 (229)
7 cd04895 ACT_ACR_1 ACT domain-c 98.4 2.7E-06 5.8E-11 67.7 9.6 63 306-369 3-69 (72)
8 cd04897 ACT_ACR_3 ACT domain-c 98.3 4.2E-06 9E-11 67.1 9.4 67 306-373 3-73 (75)
9 cd04896 ACT_ACR-like_3 ACT dom 98.2 1.1E-05 2.3E-10 64.8 9.5 65 306-372 2-72 (75)
10 cd04900 ACT_UUR-like_1 ACT dom 98.2 1.8E-05 3.8E-10 61.9 10.1 64 306-370 3-71 (73)
11 KOG3561 Aryl-hydrocarbon recep 98.2 2.3E-06 4.9E-11 93.8 6.0 51 193-243 21-75 (803)
12 KOG4304 Transcriptional repres 98.1 2.4E-06 5.2E-11 82.7 3.4 54 192-245 32-93 (250)
13 KOG2483 Upstream transcription 98.0 1.3E-05 2.8E-10 76.8 7.9 62 188-249 55-119 (232)
14 cd04925 ACT_ACR_2 ACT domain-c 97.9 9.9E-05 2.2E-09 58.1 9.8 67 306-372 2-72 (74)
15 cd04926 ACT_ACR_4 C-terminal 97.8 0.00025 5.3E-09 55.5 9.6 66 306-373 3-68 (72)
16 KOG3960 Myogenic helix-loop-he 97.8 4.4E-05 9.5E-10 73.6 6.3 61 192-252 118-180 (284)
17 cd04928 ACT_TyrKc Uncharacteri 97.7 0.00048 1E-08 54.4 9.6 64 306-372 3-67 (68)
18 cd04899 ACT_ACR-UUR-like_2 C-t 97.6 0.00068 1.5E-08 51.4 9.8 64 306-370 2-68 (70)
19 KOG0561 bHLH transcription fac 97.3 9.9E-05 2.1E-09 72.8 1.8 53 193-245 61-115 (373)
20 PRK05007 PII uridylyl-transfer 97.3 0.0013 2.8E-08 73.8 10.8 69 303-372 807-878 (884)
21 PF01842 ACT: ACT domain; Int 97.2 0.0053 1.1E-07 45.4 9.6 63 306-373 2-66 (66)
22 PRK00275 glnD PII uridylyl-tra 97.1 0.0035 7.7E-08 70.5 11.9 79 293-372 802-885 (895)
23 KOG2588 Predicted DNA-binding 97.1 0.00023 5E-09 78.9 2.3 63 191-253 275-338 (953)
24 KOG4029 Transcription factor H 97.1 0.00048 1E-08 65.4 3.9 61 190-250 107-171 (228)
25 PRK04374 PII uridylyl-transfer 97.1 0.0033 7.2E-08 70.5 11.1 79 293-372 784-866 (869)
26 PLN03217 transcription factor 97.0 0.0013 2.8E-08 54.0 5.4 51 205-255 20-76 (93)
27 cd04873 ACT_UUR-ACR-like ACT d 97.0 0.0066 1.4E-07 45.4 8.9 64 306-370 2-68 (70)
28 PRK03059 PII uridylyl-transfer 96.9 0.0046 9.9E-08 69.3 10.7 79 294-372 775-854 (856)
29 PRK01759 glnD PII uridylyl-tra 96.9 0.0048 1E-07 69.1 10.6 79 293-372 771-853 (854)
30 PRK03381 PII uridylyl-transfer 96.8 0.01 2.3E-07 65.8 11.9 79 293-372 588-666 (774)
31 PF13740 ACT_6: ACT domain; PD 96.8 0.0074 1.6E-07 47.6 7.8 65 304-372 2-66 (76)
32 PRK05092 PII uridylyl-transfer 96.7 0.012 2.6E-07 66.5 12.0 79 293-372 831-914 (931)
33 PRK03381 PII uridylyl-transfer 96.6 0.016 3.4E-07 64.4 11.4 75 294-369 696-773 (774)
34 PF13291 ACT_4: ACT domain; PD 96.5 0.036 7.9E-07 43.5 10.2 67 304-376 6-74 (80)
35 cd04893 ACT_GcvR_1 ACT domains 96.5 0.026 5.7E-07 44.6 9.2 64 305-372 2-65 (77)
36 TIGR01693 UTase_glnD [Protein- 96.4 0.019 4.2E-07 64.2 10.9 79 293-372 767-849 (850)
37 TIGR01693 UTase_glnD [Protein- 96.3 0.027 5.9E-07 63.0 11.4 69 303-372 667-740 (850)
38 PRK01759 glnD PII uridylyl-tra 96.3 0.037 8.1E-07 62.1 12.2 79 293-372 665-748 (854)
39 PRK05007 PII uridylyl-transfer 96.2 0.044 9.5E-07 61.8 12.4 79 293-372 689-772 (884)
40 PRK00194 hypothetical protein; 96.1 0.031 6.6E-07 45.0 7.7 68 304-373 3-70 (90)
41 COG2844 GlnD UTP:GlnB (protein 96.0 0.025 5.3E-07 62.8 8.6 75 293-369 779-854 (867)
42 cd04875 ACT_F4HF-DF N-terminal 96.0 0.072 1.6E-06 41.3 8.9 64 307-372 2-67 (74)
43 cd04872 ACT_1ZPV ACT domain pr 95.8 0.045 9.8E-07 44.0 7.5 66 305-372 2-67 (88)
44 cd04869 ACT_GcvR_2 ACT domains 95.8 0.099 2.1E-06 40.7 9.3 63 307-372 2-70 (81)
45 PRK00275 glnD PII uridylyl-tra 95.8 0.077 1.7E-06 60.0 11.7 69 303-372 703-777 (895)
46 PRK04374 PII uridylyl-transfer 95.8 0.069 1.5E-06 60.2 11.2 70 303-372 689-759 (869)
47 cd04894 ACT_ACR-like_1 ACT dom 95.7 0.061 1.3E-06 42.2 7.3 66 306-371 2-67 (69)
48 PRK05092 PII uridylyl-transfer 95.6 0.12 2.6E-06 58.6 12.2 80 292-372 719-804 (931)
49 PRK03059 PII uridylyl-transfer 95.5 0.075 1.6E-06 59.8 10.4 69 303-372 677-749 (856)
50 cd04870 ACT_PSP_1 CT domains f 95.4 0.12 2.7E-06 40.3 8.4 63 307-372 2-64 (75)
51 cd04887 ACT_MalLac-Enz ACT_Mal 95.3 0.25 5.4E-06 37.7 9.8 46 307-352 2-48 (74)
52 cd04876 ACT_RelA-SpoT ACT dom 94.6 0.16 3.6E-06 35.9 6.6 66 307-375 1-67 (71)
53 cd04886 ACT_ThrD-II-like C-ter 94.4 0.29 6.3E-06 36.1 7.8 60 308-370 2-66 (73)
54 cd04888 ACT_PheB-BS C-terminal 94.1 0.21 4.7E-06 38.1 6.7 67 306-374 2-69 (76)
55 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.1 0.47 1E-05 35.5 8.5 46 306-351 2-49 (79)
56 KOG3910 Helix loop helix trans 93.4 0.052 1.1E-06 57.2 2.7 58 189-246 523-584 (632)
57 cd04877 ACT_TyrR N-terminal AC 93.4 0.73 1.6E-05 35.7 8.6 37 306-343 2-38 (74)
58 PRK04435 hypothetical protein; 93.1 0.63 1.4E-05 41.6 8.8 71 301-373 66-137 (147)
59 cd04874 ACT_Af1403 N-terminal 92.8 1 2.2E-05 33.3 8.3 63 306-373 2-65 (72)
60 cd04883 ACT_AcuB C-terminal AC 92.7 1.5 3.2E-05 33.1 9.2 62 306-374 3-66 (72)
61 cd02116 ACT ACT domains are co 92.6 0.72 1.5E-05 30.7 6.7 35 307-341 1-35 (60)
62 cd04878 ACT_AHAS N-terminal AC 92.4 0.78 1.7E-05 33.7 7.3 66 306-375 2-69 (72)
63 cd04909 ACT_PDH-BS C-terminal 92.3 1.3 2.9E-05 33.3 8.5 63 306-374 3-67 (69)
64 cd04903 ACT_LSD C-terminal ACT 92.2 1 2.3E-05 33.0 7.7 62 307-374 2-65 (71)
65 cd04879 ACT_3PGDH-like ACT_3PG 92.0 1.1 2.4E-05 32.6 7.7 62 307-374 2-65 (71)
66 cd04908 ACT_Bt0572_1 N-termina 91.9 1.5 3.2E-05 33.2 8.3 61 306-375 3-63 (66)
67 KOG3558 Hypoxia-inducible fact 91.8 0.09 1.9E-06 57.4 1.9 48 192-239 46-97 (768)
68 KOG4447 Transcription factor T 91.1 0.13 2.7E-06 46.9 1.9 49 194-242 80-130 (173)
69 cd04882 ACT_Bt0572_2 C-termina 91.1 1.3 2.9E-05 32.4 7.2 59 307-374 2-62 (65)
70 KOG3898 Transcription factor N 90.0 0.17 3.8E-06 49.3 2.0 53 190-242 70-125 (254)
71 PRK06027 purU formyltetrahydro 89.9 2.2 4.9E-05 42.1 9.7 67 304-372 6-74 (286)
72 PRK08577 hypothetical protein; 89.5 2.8 6.1E-05 36.6 9.0 69 303-373 55-125 (136)
73 cd04880 ACT_AAAH-PDT-like ACT 89.0 3.7 8E-05 31.6 8.4 43 309-351 4-47 (75)
74 PRK13010 purU formyltetrahydro 88.7 2.1 4.5E-05 42.5 8.5 66 305-371 10-77 (289)
75 cd04889 ACT_PDH-BS-like C-term 88.5 2 4.4E-05 31.1 6.3 45 307-351 1-46 (56)
76 cd04905 ACT_CM-PDT C-terminal 88.5 4.7 0.0001 31.6 8.8 61 307-370 4-65 (80)
77 TIGR00655 PurU formyltetrahydr 88.3 3 6.4E-05 41.2 9.2 63 306-370 2-66 (280)
78 cd04884 ACT_CBS C-terminal ACT 88.2 3.7 8.1E-05 31.3 7.9 61 307-370 2-65 (72)
79 KOG3560 Aryl-hydrocarbon recep 88.1 0.43 9.4E-06 51.1 3.4 43 196-238 29-75 (712)
80 PRK13011 formyltetrahydrofolat 88.1 3.3 7.1E-05 41.1 9.4 66 304-372 7-74 (286)
81 cd04902 ACT_3PGDH-xct C-termin 87.9 2 4.4E-05 32.2 6.2 63 308-376 3-67 (73)
82 KOG3559 Transcriptional regula 87.4 0.62 1.4E-05 48.5 3.9 43 197-239 6-52 (598)
83 PRK07334 threonine dehydratase 87.0 4.9 0.00011 41.3 10.3 51 302-352 324-379 (403)
84 cd04901 ACT_3PGDH C-terminal A 86.7 0.69 1.5E-05 34.6 2.9 63 307-375 2-64 (69)
85 COG2844 GlnD UTP:GlnB (protein 86.6 3.3 7.2E-05 46.6 9.2 64 295-360 676-740 (867)
86 PRK11589 gcvR glycine cleavage 85.3 2.5 5.5E-05 39.5 6.6 65 304-372 8-72 (190)
87 KOG4395 Transcription factor A 84.2 1.3 2.8E-05 43.5 4.1 54 191-244 173-229 (285)
88 KOG3582 Mlx interactors and re 81.1 1.2 2.7E-05 48.9 3.0 64 191-254 650-718 (856)
89 cd04931 ACT_PAH ACT domain of 79.8 13 0.00029 30.6 8.1 46 306-351 16-62 (90)
90 TIGR00691 spoT_relA (p)ppGpp s 79.8 19 0.00042 39.9 11.7 77 294-376 596-677 (683)
91 PRK11092 bifunctional (p)ppGpp 79.7 13 0.00027 41.6 10.3 78 294-377 612-694 (702)
92 PRK10872 relA (p)ppGpp synthet 79.3 15 0.00032 41.4 10.6 59 294-352 652-716 (743)
93 PRK06382 threonine dehydratase 75.6 14 0.00029 38.1 8.6 71 301-375 327-402 (406)
94 COG3830 ACT domain-containing 75.5 4.8 0.00011 33.7 4.3 65 305-371 4-68 (90)
95 PRK00227 glnD PII uridylyl-tra 74.6 15 0.00034 40.8 9.2 63 309-373 552-614 (693)
96 TIGR00119 acolac_sm acetolacta 74.6 19 0.00041 32.8 8.3 62 306-371 3-66 (157)
97 cd04885 ACT_ThrD-I Tandem C-te 74.1 21 0.00046 27.1 7.4 62 309-375 3-65 (68)
98 PF05088 Bac_GDH: Bacterial NA 73.4 18 0.00039 43.7 9.8 69 303-372 488-561 (1528)
99 COG0788 PurU Formyltetrahydrof 72.0 18 0.00039 36.1 8.0 67 304-372 7-75 (287)
100 PRK11895 ilvH acetolactate syn 71.8 24 0.00051 32.3 8.3 61 306-370 4-66 (161)
101 cd04904 ACT_AAAH ACT domain of 71.7 22 0.00047 27.7 7.1 56 310-370 6-62 (74)
102 PF13710 ACT_5: ACT domain; PD 67.7 34 0.00074 26.1 7.2 56 313-372 1-58 (63)
103 PRK06737 acetolactate synthase 64.7 34 0.00074 27.6 6.9 61 306-370 4-66 (76)
104 TIGR01127 ilvA_1Cterm threonin 64.6 37 0.00079 34.4 8.8 70 301-374 302-376 (380)
105 COG4492 PheB ACT domain-contai 62.8 42 0.00092 30.3 7.7 71 301-373 69-140 (150)
106 PRK13562 acetolactate synthase 62.1 31 0.00066 28.6 6.3 62 306-370 4-67 (84)
107 PRK11152 ilvM acetolactate syn 61.8 56 0.0012 26.3 7.7 61 306-371 5-67 (76)
108 PRK11589 gcvR glycine cleavage 61.2 49 0.0011 31.0 8.3 67 305-372 96-166 (190)
109 PRK08526 threonine dehydratase 61.0 52 0.0011 34.1 9.3 71 301-375 323-398 (403)
110 CHL00100 ilvH acetohydroxyacid 60.3 44 0.00096 31.0 7.8 63 306-372 4-68 (174)
111 PRK08198 threonine dehydratase 58.1 63 0.0014 33.0 9.3 70 301-374 324-398 (404)
112 cd04906 ACT_ThrD-I_1 First of 54.5 1.1E+02 0.0023 24.3 8.4 65 306-375 3-68 (85)
113 KOG4447 Transcription factor T 48.5 9.7 0.00021 34.9 1.4 43 198-240 28-72 (173)
114 COG4747 ACT domain-containing 47.8 1.1E+02 0.0023 27.4 7.6 45 306-350 5-49 (142)
115 cd04929 ACT_TPH ACT domain of 47.6 1.1E+02 0.0025 24.1 7.3 40 312-351 8-48 (74)
116 cd04930 ACT_TH ACT domain of t 46.0 1.3E+02 0.0028 25.9 7.9 42 310-351 47-89 (115)
117 PF02344 Myc-LZ: Myc leucine z 45.3 22 0.00048 24.3 2.4 17 200-216 13-29 (32)
118 KOG3582 Mlx interactors and re 45.0 8 0.00017 42.9 0.3 59 192-253 787-850 (856)
119 cd04892 ACT_AK-like_2 ACT doma 42.2 1.1E+02 0.0024 21.3 6.0 33 307-339 3-38 (65)
120 cd04868 ACT_AK-like ACT domain 41.7 1.1E+02 0.0024 20.8 6.0 26 314-339 13-38 (60)
121 cd04922 ACT_AKi-HSDH-ThrA_2 AC 41.5 1.3E+02 0.0027 21.8 6.3 33 307-339 4-39 (66)
122 PF02120 Flg_hook: Flagellar h 39.1 1.2E+02 0.0026 23.6 6.2 48 292-340 26-79 (85)
123 cd04890 ACT_AK-like_1 ACT doma 38.4 50 0.0011 24.1 3.7 25 313-337 12-36 (62)
124 COG0317 SpoT Guanosine polypho 37.5 2.7E+02 0.0058 31.5 10.6 59 293-351 612-675 (701)
125 PRK08639 threonine dehydratase 34.3 2E+02 0.0043 29.8 8.6 71 301-375 333-405 (420)
126 PRK08178 acetolactate synthase 34.2 2.3E+02 0.0051 24.0 7.4 63 305-370 9-71 (96)
127 PRK11899 prephenate dehydratas 33.9 2.7E+02 0.006 27.6 9.1 60 309-371 199-259 (279)
128 PRK15385 magnesium transport p 32.2 2.6E+02 0.0056 27.1 8.4 68 303-373 141-214 (225)
129 cd04937 ACT_AKi-DapG-BS_2 ACT 31.4 1.3E+02 0.0028 22.3 5.1 29 307-335 4-35 (64)
130 cd04919 ACT_AK-Hom3_2 ACT doma 29.7 2.2E+02 0.0048 20.6 6.6 27 313-339 13-39 (66)
131 PF09849 DUF2076: Uncharacteri 29.5 1.3E+02 0.0029 29.5 6.0 48 204-253 6-73 (247)
132 TIGR02079 THD1 threonine dehyd 29.1 2.9E+02 0.0062 28.6 8.7 71 301-375 322-394 (409)
133 PRK00227 glnD PII uridylyl-tra 26.5 91 0.002 34.9 4.8 43 305-351 632-674 (693)
134 PF14689 SPOB_a: Sensor_kinase 26.1 1E+02 0.0022 23.5 3.6 41 201-248 17-57 (62)
135 PF07106 TBPIP: Tat binding pr 25.8 2.2E+02 0.0047 25.6 6.4 46 201-256 92-137 (169)
136 PRK08818 prephenate dehydrogen 24.8 2.4E+02 0.0051 29.2 7.1 38 313-351 305-342 (370)
137 cd04912 ACT_AKiii-LysC-EC-like 24.3 1.9E+02 0.0041 22.3 5.0 30 307-336 4-36 (75)
138 PF04420 CHD5: CHD5-like prote 23.6 1.3E+02 0.0027 27.3 4.4 49 195-254 37-85 (161)
139 PRK12483 threonine dehydratase 23.5 4.9E+02 0.011 28.1 9.5 69 301-375 342-412 (521)
140 TIGR01124 ilvA_2Cterm threonin 22.9 4.6E+02 0.01 28.1 9.1 69 301-375 322-391 (499)
141 COG3074 Uncharacterized protei 22.7 1.1E+02 0.0025 24.7 3.3 26 230-255 13-38 (79)
142 PF06005 DUF904: Protein of un 22.4 98 0.0021 24.7 3.0 23 230-252 13-35 (72)
143 cd04924 ACT_AK-Arch_2 ACT doma 22.3 3E+02 0.0065 19.6 7.4 33 307-339 4-39 (66)
144 PF13840 ACT_7: ACT domain ; P 22.1 1.3E+02 0.0027 22.9 3.5 31 306-336 8-42 (65)
145 cd04916 ACT_AKiii-YclM-BS_2 AC 22.0 3.1E+02 0.0066 19.6 6.4 33 307-339 4-39 (66)
146 COG4747 ACT domain-containing 21.9 3.8E+02 0.0082 24.0 6.7 44 307-351 72-117 (142)
147 PF05687 DUF822: Plant protein 21.8 75 0.0016 29.0 2.5 27 192-218 11-37 (150)
148 PRK11020 hypothetical protein; 21.2 1.5E+02 0.0033 26.0 4.1 52 200-251 3-54 (118)
149 PRK10820 DNA-binding transcrip 20.6 2.6E+02 0.0057 29.9 6.7 36 306-341 2-37 (520)
150 COG1591 Holliday junction reso 20.6 4.3E+02 0.0094 23.9 7.0 60 316-375 8-79 (137)
151 PF14197 Cep57_CLD_2: Centroso 20.3 1.3E+02 0.0029 23.7 3.4 28 227-254 39-66 (69)
152 PRK09224 threonine dehydratase 20.2 6.8E+02 0.015 26.8 9.7 70 301-375 325-395 (504)
153 PF02185 HR1: Hr1 repeat; Int 20.2 3.8E+02 0.0083 20.5 5.9 50 197-254 10-59 (70)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.30 E-value=2.7e-12 Score=96.04 Aligned_cols=53 Identities=38% Similarity=0.657 Sum_probs=49.5
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 017062 192 LPAKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIDYLKELLQRI 244 (378)
Q Consensus 192 ~~~~h~~~ER~RR~kmn~~~~~LrslvP~~---~K~dKasIL~dAI~YIk~Lq~~v 244 (378)
.+..|+..||+||.+||+.|..|+++||.. .|++|++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 346799999999999999999999999987 89999999999999999999875
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.27 E-value=7.9e-12 Score=91.80 Aligned_cols=49 Identities=41% Similarity=0.649 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHHHHHHHccCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 017062 197 LMAERRRRKKLNDRLYMLRSVVPK---ISKMDRASILGDAIDYLKELLQRIN 245 (378)
Q Consensus 197 ~~~ER~RR~kmn~~~~~LrslvP~---~~K~dKasIL~dAI~YIk~Lq~~v~ 245 (378)
+..||+||.+||+.|..|+++||. ..|++|++||..||+||++|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999994 6799999999999999999999875
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.26 E-value=3.8e-12 Score=94.75 Aligned_cols=49 Identities=45% Similarity=0.672 Sum_probs=46.0
Q ss_pred CccccHHHHHHHHHHHHHHHHHHccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 017062 193 PAKNLMAERRRRKKLNDRLYMLRSVVPKI-----SKMDRASILGDAIDYLKELL 241 (378)
Q Consensus 193 ~~~h~~~ER~RR~kmn~~~~~LrslvP~~-----~K~dKasIL~dAI~YIk~Lq 241 (378)
+..|+..||+||.+||+.|..|+.+||.. .|.+|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 36799999999999999999999999975 68999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.77 E-value=6.7e-09 Score=105.86 Aligned_cols=58 Identities=33% Similarity=0.551 Sum_probs=51.4
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHccCCCC----CCCChhhHHHHHHHHHHHHHHHHHH
Q 017062 189 RKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKI----SKMDRASILGDAIDYLKELLQRIND 246 (378)
Q Consensus 189 k~~~~~~h~~~ER~RR~kmn~~~~~LrslvP~~----~K~dKasIL~dAI~YIk~Lq~~v~~ 246 (378)
.+.++..|++.|||||.+||+++..|..|||++ .|..|..||..+++||++||+..++
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 344568999999999999999999999999986 4778999999999999999986663
No 5
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.56 E-value=4.3e-07 Score=72.12 Aligned_cols=71 Identities=24% Similarity=0.347 Sum_probs=59.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEeeeecCCcc---cCHHHHHHHHHhhhCCCCC
Q 017062 305 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC-FNGFALDVFRAEQCREGQD---VLPKQIKSVLLDTAGFHDV 377 (378)
Q Consensus 305 V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~-~ng~v~~tf~aeq~keg~~---v~~e~Lk~~Ll~~~G~~~~ 377 (378)
+.++|+|+.|+|+|.++..+|..+||+|+.|.|++ .+++++++|.+... .+.. ...++|+++|.+.+| +.|
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~~~~~~~~~~l~~~L~~~L~-~~~ 75 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-RELLHTKKRREETYDYLRAVLG-DSM 75 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHHc-hhc
Confidence 35899999999999999999999999999999996 89999999999532 3331 245678999999999 544
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.55 E-value=4e-08 Score=90.67 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=55.7
Q ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 017062 188 KRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKI-------SKMDRASILGDAIDYLKELLQRINDLHNELE 252 (378)
Q Consensus 188 ~k~~~~~~h~~~ER~RR~kmn~~~~~LrslvP~~-------~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e 252 (378)
-|.+|+..|..+||+||+.||..|+.|..|||-+ .|..||-||..+|+||.+|..++..-+++..
T Consensus 58 yk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s 129 (229)
T KOG1319|consen 58 YKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVS 129 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678999999999999999999999999964 3788999999999999999987776666543
No 7
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.40 E-value=2.7e-06 Score=67.70 Aligned_cols=63 Identities=32% Similarity=0.480 Sum_probs=53.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCH----HHHHHHHH
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLP----KQIKSVLL 369 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~----e~Lk~~Ll 369 (378)
.|+|.+.+|||+|.+|.++|..+||+|..|.|++.++++.++|.+.. ..|..+.. +.|+++|.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence 48899999999999999999999999999999999999999999964 46666643 44455543
No 8
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.33 E-value=4.2e-06 Score=67.14 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=57.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccC----HHHHHHHHHhhhC
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL----PKQIKSVLLDTAG 373 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~----~e~Lk~~Ll~~~G 373 (378)
.|+|.|.+|||||.+|..+|-.+|++|.+|.|++.++++.++|.+.. ..|..+. .+.|+++|..+++
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHh
Confidence 48899999999999999999999999999999999999999999964 4566553 4567777776653
No 9
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.23 E-value=1.1e-05 Score=64.81 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=55.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEeeeecCCccc-C---HHHHHHHHHhhh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS--CFNGFALDVFRAEQCREGQDV-L---PKQIKSVLLDTA 372 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS--~~ng~v~~tf~aeq~keg~~v-~---~e~Lk~~Ll~~~ 372 (378)
.|+|.|.+|||||.+|.++|..+||+|..|.|+ +.+.++.++|.+ .. .|..+ + .+.|+++|+..+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-~g~kl~d~~~~~~L~~~L~~~l 72 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-DGKKIMDPKKQAALCARLREEM 72 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-CCCccCCHHHHHHHHHHHHHHh
Confidence 488999999999999999999999999999999 999999999999 54 34334 2 456777777654
No 10
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.20 E-value=1.8e-05 Score=61.87 Aligned_cols=64 Identities=34% Similarity=0.576 Sum_probs=51.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEeeeecCCcccC----HHHHHHHHHh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQCREGQDVL----PKQIKSVLLD 370 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~-ng~v~~tf~aeq~keg~~v~----~e~Lk~~Ll~ 370 (378)
.|.|+|++|+|+|.+|..+|..+||+|+.|.|.+. +++++++|.+.. .++.... .++|++.|.+
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999877 799999999953 3444443 3445555544
No 11
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.17 E-value=2.3e-06 Score=93.80 Aligned_cols=51 Identities=27% Similarity=0.408 Sum_probs=48.0
Q ss_pred CccccHHHHHHHHHHHHHHHHHHccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 017062 193 PAKNLMAERRRRKKLNDRLYMLRSVVPKI----SKMDRASILGDAIDYLKELLQR 243 (378)
Q Consensus 193 ~~~h~~~ER~RR~kmn~~~~~LrslvP~~----~K~dKasIL~dAI~YIk~Lq~~ 243 (378)
+..|+.+|||||+|||..+.+|.++||.+ .|+||.+||..||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 68899999999999999999999999964 5999999999999999999884
No 12
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.07 E-value=2.4e-06 Score=82.67 Aligned_cols=54 Identities=26% Similarity=0.477 Sum_probs=48.1
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHccCCC--------CCCCChhhHHHHHHHHHHHHHHHHH
Q 017062 192 LPAKNLMAERRRRKKLNDRLYMLRSVVPK--------ISKMDRASILGDAIDYLKELLQRIN 245 (378)
Q Consensus 192 ~~~~h~~~ER~RR~kmn~~~~~LrslvP~--------~~K~dKasIL~dAI~YIk~Lq~~v~ 245 (378)
++..|-+.||+||.+||+.|..|+.|||. .+|++||.||.-|++|+++|+....
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 45778899999999999999999999993 2799999999999999999987543
No 13
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.05 E-value=1.3e-05 Score=76.85 Aligned_cols=62 Identities=24% Similarity=0.331 Sum_probs=50.4
Q ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCC--CCC-ChhhHHHHHHHHHHHHHHHHHHHHH
Q 017062 188 KRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKI--SKM-DRASILGDAIDYLKELLQRINDLHN 249 (378)
Q Consensus 188 ~k~~~~~~h~~~ER~RR~kmn~~~~~LrslvP~~--~K~-dKasIL~dAI~YIk~Lq~~v~~L~~ 249 (378)
.....+..|+..||+||.+|++.|..|+.+||.. .+. +.++||..|.+||+.|+.+....+.
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~ 119 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQ 119 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHH
Confidence 3445578899999999999999999999999973 233 3789999999999999876554433
No 14
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.94 E-value=9.9e-05 Score=58.08 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=54.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCccc----CHHHHHHHHHhhh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDV----LPKQIKSVLLDTA 372 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v----~~e~Lk~~Ll~~~ 372 (378)
.|+|.++.|||+|.+|..+|..+|++|+.|.+++.++.++++|.+.....+... ..++|++.|.+.+
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 488999999999999999999999999999999999999999998632213322 2466777776643
No 15
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.78 E-value=0.00025 Score=55.46 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=54.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
.|.|.++.++|+|.+|..+|.++|++|++|.+.+.++.++.+|++.. .++..... +..++|.+.+|
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPVDP-KTIEAVRQEIG 68 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcCCH-HHHHHHHHHhc
Confidence 57788999999999999999999999999999999889999999964 34444443 45566777777
No 16
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.78 E-value=4.4e-05 Score=73.60 Aligned_cols=61 Identities=26% Similarity=0.385 Sum_probs=51.2
Q ss_pred CCccccHHHHHHHHHHHHHHHHH-HccCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 017062 192 LPAKNLMAERRRRKKLNDRLYML-RSVVPK-ISKMDRASILGDAIDYLKELLQRINDLHNELE 252 (378)
Q Consensus 192 ~~~~h~~~ER~RR~kmn~~~~~L-rslvP~-~~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e 252 (378)
|+..-.|.||||=+|+|+-|.+| |...++ ..+.-|..||..||+||..||.-++++.+...
T Consensus 118 RRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 118 RRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 45567799999999999999999 455554 57889999999999999999998888776544
No 17
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.67 E-value=0.00048 Score=54.37 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=53.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~-ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.|-|+|+.+||+|.+|..+|..+||+|+.|.|.+. +|.++++|.+... ..-....|.++|++++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~---~~~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW---KRGETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC---CccchHHHHHHHHHhh
Confidence 46789999999999999999999999999999855 8999999999532 2346778888887754
No 18
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.63 E-value=0.00068 Score=51.42 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=51.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccC---HHHHHHHHHh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL---PKQIKSVLLD 370 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~---~e~Lk~~Ll~ 370 (378)
.|.|.|..++|+|.+|+.+|.+++++|.++.+.+.++.++..|.+... .+.... .++|+++|.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~~~~~~~~~i~~~l~~ 68 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQPLDPERQEALRAALGE 68 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCcCCHHHHHHHHHHHHh
Confidence 478899999999999999999999999999999988899999998642 333333 3346666654
No 19
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.30 E-value=9.9e-05 Score=72.84 Aligned_cols=53 Identities=28% Similarity=0.444 Sum_probs=46.3
Q ss_pred CccccHHHHHHHHHHHHHHHHHHccCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 017062 193 PAKNLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIDYLKELLQRIN 245 (378)
Q Consensus 193 ~~~h~~~ER~RR~kmn~~~~~LrslvP~--~~K~dKasIL~dAI~YIk~Lq~~v~ 245 (378)
+.--+.-||||=.-||..|..||+|+|. ..|..||.||+.+.+||.+|+.+.-
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt 115 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKT 115 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence 3445678999999999999999999996 5799999999999999999976443
No 20
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.30 E-value=0.0013 Score=73.80 Aligned_cols=69 Identities=17% Similarity=0.336 Sum_probs=59.1
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccC---HHHHHHHHHhhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL---PKQIKSVLLDTA 372 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~---~e~Lk~~Ll~~~ 372 (378)
.-..|+|.|.+|||||.+|.++|.++||+|.+|.|+|.++++.++|.+. ...|..++ .+.|+++|+..+
T Consensus 807 ~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~-~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 807 RRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILA-TADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEE-cCCCCcCCHHHHHHHHHHHHHHH
Confidence 4456999999999999999999999999999999999999999999995 34566555 457777777765
No 21
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.17 E-value=0.0053 Score=45.43 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=48.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC--EEEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNG--FALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng--~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
.|.|.|+.|||+|.+|.++|.++|++|.++.+....+ ..+..+... .....+.+.++|.+..|
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV-----DEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE-----EGHGHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC-----CCCCHHHHHHHHHcccC
Confidence 5788999999999999999999999999999999877 333332221 13567777777776654
No 22
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.12 E-value=0.0035 Score=70.51 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=62.0
Q ss_pred ceEEEEEeC-CcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccC----HHHHHHH
Q 017062 293 ARVEVRIRE-GRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL----PKQIKSV 367 (378)
Q Consensus 293 ~~VeV~v~e-g~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~----~e~Lk~~ 367 (378)
+.|.+.... .....|.|++..|||+|.+|..+|..+||+|+.|.|++.+++++++|.+... +|..+. .++|+++
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~ 880 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDA 880 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHH
Confidence 455554332 2456799999999999999999999999999999999999999999999643 444332 3567788
Q ss_pred HHhhh
Q 017062 368 LLDTA 372 (378)
Q Consensus 368 Ll~~~ 372 (378)
|.+.+
T Consensus 881 L~~~L 885 (895)
T PRK00275 881 ICEQL 885 (895)
T ss_pred HHHHH
Confidence 87665
No 23
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.11 E-value=0.00023 Score=78.94 Aligned_cols=63 Identities=29% Similarity=0.474 Sum_probs=55.2
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHccCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 017062 191 GLPAKNLMAERRRRKKLNDRLYMLRSVVPK-ISKMDRASILGDAIDYLKELLQRINDLHNELES 253 (378)
Q Consensus 191 ~~~~~h~~~ER~RR~kmn~~~~~LrslvP~-~~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e~ 253 (378)
.+|..|+++|||-|--||+++..|+.+||. ..|+.|.+.|..||+||++|+...+.++.+.++
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~ 338 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENAS 338 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhh
Confidence 446889999999999999999999999996 479999999999999999999877766665433
No 24
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.09 E-value=0.00048 Score=65.43 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=51.0
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHHccCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 017062 190 KGLPAKNLMAERRRRKKLNDRLYMLRSVVPK----ISKMDRASILGDAIDYLKELLQRINDLHNE 250 (378)
Q Consensus 190 ~~~~~~h~~~ER~RR~kmn~~~~~LrslvP~----~~K~dKasIL~dAI~YIk~Lq~~v~~L~~e 250 (378)
...+..++..||+|=+.+|..|..||.+||. ..|..|..+|.-||.||+.|++-++.-+..
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 3345667777999999999999999999994 468899999999999999998866654433
No 25
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.08 E-value=0.0033 Score=70.55 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=63.6
Q ss_pred ceEEEEEe-CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCccc---CHHHHHHHH
Q 017062 293 ARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDV---LPKQIKSVL 368 (378)
Q Consensus 293 ~~VeV~v~-eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v---~~e~Lk~~L 368 (378)
+.|.+... .+....|.|++..|||+|.+|..+|..+||+|..|.|+|.+++++++|.+.. .+|... ..++|+++|
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d-~~g~~~~~~~~~~l~~~L 862 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD-EHDRPLSESARQALRDAL 862 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcCChHHHHHHHHHH
Confidence 45665542 2345779999999999999999999999999999999999999999999964 344333 247888888
Q ss_pred Hhhh
Q 017062 369 LDTA 372 (378)
Q Consensus 369 l~~~ 372 (378)
+..+
T Consensus 863 ~~~l 866 (869)
T PRK04374 863 CACL 866 (869)
T ss_pred HHHh
Confidence 8765
No 26
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.02 E-value=0.0013 Score=54.04 Aligned_cols=51 Identities=25% Similarity=0.567 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHccCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 017062 205 KKLNDRLYMLRSVVPKI------SKMDRASILGDAIDYLKELLQRINDLHNELESTP 255 (378)
Q Consensus 205 ~kmn~~~~~LrslvP~~------~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e~~~ 255 (378)
++|++....|+.|+|.. .|..-+-+|+|+..||+.|+++|..|.+++.++.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL 76 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999963 3445566899999999999999999999887655
No 27
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.02 E-value=0.0066 Score=45.44 Aligned_cols=64 Identities=34% Similarity=0.527 Sum_probs=49.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcc---cCHHHHHHHHHh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQD---VLPKQIKSVLLD 370 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~---v~~e~Lk~~Ll~ 370 (378)
.|.|.|..++|+|.+|+.+|.++++.|.++.+.+.++.....|++... ++.. ...+.|++.|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~l~~~l~~ 68 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPLDPERIARLEEALED 68 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcCCHHHHHHHHHHHHh
Confidence 477899999999999999999999999999999887788888888642 2222 234445555544
No 28
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.95 E-value=0.0046 Score=69.31 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=60.2
Q ss_pred eEEEEEe-CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 294 RVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 294 ~VeV~v~-eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.|.+... .+....|.|+|..|||+|.+|..+|..+||+|..|.|++.+++++++|.+...+....-..+.|+++|.+.+
T Consensus 775 ~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 775 RVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred eEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 4554432 234567999999999999999999999999999999999999999999993211111223567788877654
No 29
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.92 E-value=0.0048 Score=69.09 Aligned_cols=79 Identities=25% Similarity=0.359 Sum_probs=62.7
Q ss_pred ceEEEEEe-CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccC---HHHHHHHH
Q 017062 293 ARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL---PKQIKSVL 368 (378)
Q Consensus 293 ~~VeV~v~-eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~---~e~Lk~~L 368 (378)
+.|.+.-. .+.-..|+|.+.+|||||.+|.++|.++|++|..|-|+|.++++.++|.+.. ..|..+. .++|+++|
T Consensus 771 ~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~-~~g~~l~~~~~~~l~~~L 849 (854)
T PRK01759 771 TEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTN-QQGQALDEEERKALKSRL 849 (854)
T ss_pred CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEEC-CCCCcCChHHHHHHHHHH
Confidence 44554322 1234669999999999999999999999999999999999999999999964 4455443 37788888
Q ss_pred Hhhh
Q 017062 369 LDTA 372 (378)
Q Consensus 369 l~~~ 372 (378)
++++
T Consensus 850 ~~~l 853 (854)
T PRK01759 850 LSNL 853 (854)
T ss_pred HHHh
Confidence 7764
No 30
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.80 E-value=0.01 Score=65.80 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=62.1
Q ss_pred ceEEEEEeCCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 293 ARVEVRIREGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 293 ~~VeV~v~eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
+.|.++......+.|.|+|.+|||++.+|..+|..+|++|++|.|.+.+|.++.+|.+.. ..|.....++|++.|.+.+
T Consensus 588 ~~v~~~~~~~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~~~~~l~~~L~~~L 666 (774)
T PRK03381 588 VHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPPDAALLRQDLRRAL 666 (774)
T ss_pred CEEEEeeCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcchHHHHHHHHHHHH
Confidence 445554322345779999999999999999999999999999999999999999999963 3444344577877777654
No 31
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.79 E-value=0.0074 Score=47.56 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=54.0
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.+.|++.+++|||++..|..+|.++|.+|..++.++.++.+..++.++.. .-..++|+++|...+
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~----~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP----EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES----HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC----cccHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999998888642 337788998888764
No 32
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.75 E-value=0.012 Score=66.53 Aligned_cols=79 Identities=32% Similarity=0.421 Sum_probs=62.8
Q ss_pred ceEEEEEeC-CcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCccc-C---HHHHHHH
Q 017062 293 ARVEVRIRE-GRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDV-L---PKQIKSV 367 (378)
Q Consensus 293 ~~VeV~v~e-g~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v-~---~e~Lk~~ 367 (378)
+.|.+.-.. .....|.|.|.+|||+|.+|..+|.++|++|..|.|++.++++.++|.+... +|..+ . .++|+++
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~ 909 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIRRA 909 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHH
Confidence 455554322 2456799999999999999999999999999999999999999999999643 34433 2 4678888
Q ss_pred HHhhh
Q 017062 368 LLDTA 372 (378)
Q Consensus 368 Ll~~~ 372 (378)
|.+.+
T Consensus 910 L~~~L 914 (931)
T PRK05092 910 LLAAL 914 (931)
T ss_pred HHHHh
Confidence 88766
No 33
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.59 E-value=0.016 Score=64.43 Aligned_cols=75 Identities=27% Similarity=0.355 Sum_probs=58.3
Q ss_pred eEEEEEeC-CcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccC--HHHHHHHHH
Q 017062 294 RVEVRIRE-GRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL--PKQIKSVLL 369 (378)
Q Consensus 294 ~VeV~v~e-g~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~--~e~Lk~~Ll 369 (378)
.|.+.... +....|.|.|..|||+|.+|..+|..+|++|..|.|++.+++++++|.+.. .+|..+. .+.|+++|+
T Consensus 696 ~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d-~~g~~~~~~~~~l~~~L~ 773 (774)
T PRK03381 696 RVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTG-AAGGPLADARAAVEQAVL 773 (774)
T ss_pred EEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEEC-CCCCcCchHHHHHHHHhh
Confidence 44444332 235779999999999999999999999999999999999999999999963 4454332 455555554
No 34
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.54 E-value=0.036 Score=43.45 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=51.3
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCCCC
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFHD 376 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~--ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~~ 376 (378)
.+.|+|.|..|+|+|.+|..++.+.|+.|.++++... ++.+.-.|.++. -+.++|...+.+.-++.|
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V------~d~~~L~~ii~~L~~i~~ 74 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV------KDLEHLNQIIRKLRQIPG 74 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE------SSHHHHHHHHHHHCTSTT
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE------CCHHHHHHHHHHHHCCCC
Confidence 5678899999999999999999999999999999984 678888888875 245666666655555544
No 35
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.50 E-value=0.026 Score=44.61 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=54.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 305 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 305 V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
+.|.+.|++|||+..+|-+.|.++|.+|..++....++.++..+.++.. ....++|++.|...+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~~~~~~l~~~l~~~~ 65 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----WDAIAKLEAALPGLA 65 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----cccHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999988887777632 246788888777655
No 36
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.42 E-value=0.019 Score=64.15 Aligned_cols=79 Identities=32% Similarity=0.413 Sum_probs=61.8
Q ss_pred ceEEEEEeC-CcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccC---HHHHHHHH
Q 017062 293 ARVEVRIRE-GRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVL---PKQIKSVL 368 (378)
Q Consensus 293 ~~VeV~v~e-g~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~---~e~Lk~~L 368 (378)
+.|.+.-.. .+-..|.|.|.+|||+|.+|.++|..+|++|.+|.|++.++++.++|.+.. ..|.... .+.|+++|
T Consensus 767 ~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~-~~g~~~~~~~~~~l~~~L 845 (850)
T TIGR01693 767 PRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD-LFGLKLTDEEEQRLLEVL 845 (850)
T ss_pred CeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEEC-CCCCCCCHHHHHHHHHHH
Confidence 345553222 234679999999999999999999999999999999999999999999953 3454443 57778887
Q ss_pred Hhhh
Q 017062 369 LDTA 372 (378)
Q Consensus 369 l~~~ 372 (378)
+..+
T Consensus 846 ~~~l 849 (850)
T TIGR01693 846 AASV 849 (850)
T ss_pred HHHh
Confidence 7654
No 37
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.33 E-value=0.027 Score=62.98 Aligned_cols=69 Identities=23% Similarity=0.394 Sum_probs=56.1
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEeeeecCCcccC----HHHHHHHHHhhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS-CFNGFALDVFRAEQCREGQDVL----PKQIKSVLLDTA 372 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS-~~ng~v~~tf~aeq~keg~~v~----~e~Lk~~Ll~~~ 372 (378)
....|.|++.+++|+|.+|..+|..+||+|+.|.|+ +.+|+++++|.+.. .+|..+. .++|++.|.+.+
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~~~L 740 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLVDVL 740 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999 77999999999964 3444332 344666666655
No 38
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.28 E-value=0.037 Score=62.12 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=60.2
Q ss_pred ceEEEEEe-CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEeeeecCCcccCHH---HHHHH
Q 017062 293 ARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC-FNGFALDVFRAEQCREGQDVLPK---QIKSV 367 (378)
Q Consensus 293 ~~VeV~v~-eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~-~ng~v~~tf~aeq~keg~~v~~e---~Lk~~ 367 (378)
+.|.++.. ......|.|+|++++|+|.+|..+|..+||+|+.|.|.+ .+|.++++|.+... +|..+..+ +|++.
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~~~~~~~l~~~ 743 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLEFDRRRQLEQA 743 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCCHHHHHHHHHH
Confidence 45555432 224567999999999999999999999999999999976 89999999999643 45444433 46666
Q ss_pred HHhhh
Q 017062 368 LLDTA 372 (378)
Q Consensus 368 Ll~~~ 372 (378)
|.+.+
T Consensus 744 L~~aL 748 (854)
T PRK01759 744 LTKAL 748 (854)
T ss_pred HHHHH
Confidence 66554
No 39
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.24 E-value=0.044 Score=61.80 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=59.8
Q ss_pred ceEEEEEe-CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEeeeecCCcccCH---HHHHHH
Q 017062 293 ARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQCREGQDVLP---KQIKSV 367 (378)
Q Consensus 293 ~~VeV~v~-eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~-ng~v~~tf~aeq~keg~~v~~---e~Lk~~ 367 (378)
+.|.++.. ......|.|+|.+++|+|.+|..+|..+||+|+.|.|.+. +|+++++|.+.. .+|..+.. ++|++.
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~~~~~~~~I~~~ 767 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPLSQDRHQVIRKA 767 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCCCHHHHHHHHHH
Confidence 44555432 2346779999999999999999999999999999998866 569999999964 34444443 346777
Q ss_pred HHhhh
Q 017062 368 LLDTA 372 (378)
Q Consensus 368 Ll~~~ 372 (378)
|.+++
T Consensus 768 L~~aL 772 (884)
T PRK05007 768 LEQAL 772 (884)
T ss_pred HHHHH
Confidence 77655
No 40
>PRK00194 hypothetical protein; Validated
Probab=96.11 E-value=0.031 Score=44.95 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=53.5
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
.+.|.|.|+++||++.+|.+.|.++|++|...+..+.++.+.-.+.+.-. +.....+.|++.|....+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~l~~l~~ 70 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKKDFAELKEELEELGK 70 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999988888877766665421 223457888877766543
No 41
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.025 Score=62.78 Aligned_cols=75 Identities=27% Similarity=0.427 Sum_probs=57.7
Q ss_pred ceEEEEEeC-CcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHH
Q 017062 293 ARVEVRIRE-GRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLL 369 (378)
Q Consensus 293 ~~VeV~v~e-g~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll 369 (378)
+.|.+.-.. .+...+++.+..|||+|..|-.+|..++|+|++|.|++++.++.++|.+.. ..|..+ ..++++.|.
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~-~~~~~l-~~~~~q~l~ 854 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTD-ADGQAL-NAELRQSLL 854 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEec-cccccC-CHHHHHHHH
Confidence 455554332 234569999999999999999999999999999999999999999999953 456655 333444433
No 42
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.95 E-value=0.072 Score=41.28 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=46.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~--ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
|+|.|+.|+|++.+|.+.|.++|++|...+..+. ++.+.-.+.+.- ....+..++|+++|...+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFEL--EGFDLSREALEAAFAPVA 67 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEe--CCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999999999988863 333222222221 111357889998887755
No 43
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.82 E-value=0.045 Score=44.00 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=53.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 305 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 305 V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
+.|.+.|+++||++.+|.+.|-++|++|...+..+.++.++-.+.+.-. +.....++|++.|...+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999988888877777666531 22466788887776654
No 44
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.81 E-value=0.099 Score=40.74 Aligned_cols=63 Identities=10% Similarity=0.153 Sum_probs=50.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC------CEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN------GFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n------g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
|.|.|+.++|++.+|-++|.++|++|...+..+.+ +.+.-.+.+.. .. .....+|++.|...+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~-p~--~~~~~~l~~~l~~l~ 70 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLAL-PA--GTDLDALREELEELC 70 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEec-CC--CCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999998887 55555555542 22 467888888777654
No 45
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.78 E-value=0.077 Score=59.96 Aligned_cols=69 Identities=23% Similarity=0.407 Sum_probs=54.5
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCEEEEEEEeeeecCCccc--C---HHHHHHHHHhhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVI-SCFNGFALDVFRAEQCREGQDV--L---PKQIKSVLLDTA 372 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~i-S~~ng~v~~tf~aeq~keg~~v--~---~e~Lk~~Ll~~~ 372 (378)
....|.|+|..++|+|.+|..+|..+||+|+.|.| |+.+|+++++|.+... +|..+ . .++|++.|.+.+
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r~~~i~~~L~~~L 777 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPARIEQIREGLTEAL 777 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHHHHHHHHHHHHHH
Confidence 45779999999999999999999999999999998 5668999999999643 34332 2 344666666554
No 46
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.76 E-value=0.069 Score=60.18 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=55.1
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC-FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~-~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
....|.|+|..++|+|.+|..+|..+||+|+.|.|.+ .+|.++++|.+....+......++|++.|.+.+
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l 759 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVL 759 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999987 689999999996433222223445666665543
No 47
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.67 E-value=0.061 Score=42.23 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=56.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDT 371 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~ 371 (378)
.|.|.|+++.|+-.++.+.+-+.||.|+...+++.+...+-.|-+........+.=+-||.+|++.
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 488999999999999999999999999999999999988888877544444467788899988764
No 48
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.55 E-value=0.12 Score=58.58 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=60.1
Q ss_pred cceEEEEEe-CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEeeeecCCccc----CHHHHH
Q 017062 292 AARVEVRIR-EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC-FNGFALDVFRAEQCREGQDV----LPKQIK 365 (378)
Q Consensus 292 ~~~VeV~v~-eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~-~ng~v~~tf~aeq~keg~~v----~~e~Lk 365 (378)
.+.|.++.. +.....|.|+|..++|+|.+|..+|..+|++|+.|.|.+ .+|+++++|.+.. ..|... ..+.|+
T Consensus 719 ~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 719 PLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLA 797 (931)
T ss_pred CcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHH
Confidence 445655543 224678999999999999999999999999999999887 6899999998853 233221 355566
Q ss_pred HHHHhhh
Q 017062 366 SVLLDTA 372 (378)
Q Consensus 366 ~~Ll~~~ 372 (378)
+.|...+
T Consensus 798 ~~L~~~l 804 (931)
T PRK05092 798 KAIEDAL 804 (931)
T ss_pred HHHHHHH
Confidence 6666554
No 49
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.52 E-value=0.075 Score=59.77 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=54.4
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCEEEEEEEeeeecCCccc---CHHHHHHHHHhhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVI-SCFNGFALDVFRAEQCREGQDV---LPKQIKSVLLDTA 372 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~i-S~~ng~v~~tf~aeq~keg~~v---~~e~Lk~~Ll~~~ 372 (378)
....|.|+|..++|+|.+|..+|..+||+|+.|.| ++.+|+++++|.+... .|... ..++|++.|.+.+
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EEDVHYRDIINLVEHELAERL 749 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCCCChHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999 4679999999999642 33311 2455666665543
No 50
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.40 E-value=0.12 Score=40.27 Aligned_cols=63 Identities=19% Similarity=0.139 Sum_probs=52.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
|++.+.+|||+..++.++|.++|++|...+.++..+.+...+.+.-. . ....++|++.|...+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~--~~~~~~l~~~l~~l~ 64 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-D--SADSEALLKDLLFKA 64 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-C--CCCHHHHHHHHHHHH
Confidence 67889999999999999999999999999999998887777766532 2 356888888887765
No 51
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.34 E-value=0.25 Score=37.70 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=38.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEeee
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQ 352 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~-ng~v~~tf~aeq 352 (378)
|+|.+..++|+|.+|+.++.+.|..|...++... ++.+...|.++.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev 48 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA 48 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc
Confidence 6788899999999999999999999999988776 466666666654
No 52
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.63 E-value=0.16 Score=35.94 Aligned_cols=66 Identities=20% Similarity=0.154 Sum_probs=46.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n-g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
|+|.|..++|.+.+++..|.+.+++|....+...+ +.....+.++... ......+.+.|...-|+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~v~ 67 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD---LEHLARIMRKLRQIPGVI 67 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC---HHHHHHHHHHHhCCCCcE
Confidence 35678899999999999999999999999887665 4444445554321 234566666666665544
No 53
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.41 E-value=0.29 Score=36.13 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=42.4
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEeeeecCCcccCHHHHHHHHHh
Q 017062 308 HMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-----NGFALDVFRAEQCREGQDVLPKQIKSVLLD 370 (378)
Q Consensus 308 kI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~-----ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~ 370 (378)
.|.++.+||.|.+|+++|.+.|++|.+...... .+.....|+++. .+ ....+.+.+.|..
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-~~--~~~l~~l~~~l~~ 66 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-RG--AEHIEEIIAALRE 66 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-CC--HHHHHHHHHHHHH
Confidence 567889999999999999999999998887654 355555566653 11 2334566666543
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.11 E-value=0.21 Score=38.08 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=48.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCC
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 374 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~-ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~ 374 (378)
.|.|.+..++|+|.+|+++|.+.+.+|...+.+.. ++.....|.++.. +.....++|.++|.+.-|.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~--~~~~~l~~l~~~L~~i~~V 69 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS--TMNGDIDELLEELREIDGV 69 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC--chHHHHHHHHHHHhcCCCe
Confidence 47788899999999999999999999999877653 4555555666531 2223556777777766553
No 55
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.10 E-value=0.47 Score=35.53 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=36.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEee
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAE 351 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--g~v~~tf~ae 351 (378)
+|.|.+..++|+|.+++..|.+.+..+.+....... +...-.+..+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~ 49 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH 49 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence 688999999999999999999999999998876552 4444444443
No 56
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=93.41 E-value=0.052 Score=57.19 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=46.9
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHccCC----CCCCCChhhHHHHHHHHHHHHHHHHHH
Q 017062 189 RKGLPAKNLMAERRRRKKLNDRLYMLRSVVP----KISKMDRASILGDAIDYLKELLQRIND 246 (378)
Q Consensus 189 k~~~~~~h~~~ER~RR~kmn~~~~~LrslvP----~~~K~dKasIL~dAI~YIk~Lq~~v~~ 246 (378)
-|.||..+++.||-|=+.||+-|.+|--+.= ....-.|.-||..|+.-|-.|++||.+
T Consensus 523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 3456778888999998999999999966543 123457889999999999999999976
No 57
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.40 E-value=0.73 Score=35.74 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=33.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCE
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGF 343 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~ 343 (378)
.|+|.|..|+|+|.+|+.++.+.+..|.+.++... +.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence 47899999999999999999999999999998765 55
No 58
>PRK04435 hypothetical protein; Provisional
Probab=93.07 E-value=0.63 Score=41.60 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=53.8
Q ss_pred CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 301 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC-FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 301 eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~-~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
.|+.+.|.+.+..++|+|.+|+++|.+.|.+|...+.+. .++.+.-+|.++.. +.....++|.++|...-|
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~~~~~L~~Li~~L~~i~g 137 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--SMEGDIDELLEKLRNLDG 137 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--ChHHHHHHHHHHHHcCCC
Confidence 468889999999999999999999999999999987665 36766667777642 222356666666665544
No 59
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.80 E-value=1 Score=33.26 Aligned_cols=63 Identities=14% Similarity=0.061 Sum_probs=45.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n-g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
.|.|.+..++|.|.+++..|.+.++.|.+......+ +....++.+.. . ...+++.+.|.+.-|
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~----~-~~~~~~~~~L~~~~~ 65 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG----V-GDIEELVEELRSLPI 65 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec----c-ccHHHHHHHHhCCCC
Confidence 367788999999999999999999999988877653 44444444432 1 355567777766544
No 60
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.67 E-value=1.5 Score=33.06 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=46.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCC
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 374 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~--ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~ 374 (378)
.|.+..++++|.|.+++++|.+.|+.|.+...... .+....+|+++. .+.++++++|.+ .||
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~------~~~~~~~~~L~~-~G~ 66 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT------MNPRPIIEDLRR-AGY 66 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec------CCHHHHHHHHHH-CCC
Confidence 46677889999999999999999999998755433 356666676653 335688888755 465
No 61
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=92.63 E-value=0.72 Score=30.69 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=30.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN 341 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n 341 (378)
|.+.|..++|.+.+++.+|...++.|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788889999999999999999999999877653
No 62
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=92.44 E-value=0.78 Score=33.66 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=46.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~--ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
.+.+.+..++|.|.+|+..|.+.++.|.+...... ++.....|.+.. .. -..+++.+.|.+.-|+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~l~~~l~~~~~v~ 69 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG---DD-DVIEQIVKQLNKLVDVL 69 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC---CH-HHHHHHHHHHhCCccEE
Confidence 36677889999999999999999999999887764 455555666643 11 34556666666555543
No 63
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.33 E-value=1.3 Score=33.31 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=44.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-C-EEEEEEEeeeecCCcccCHHHHHHHHHhhhCC
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-G-FALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 374 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n-g-~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~ 374 (378)
.+.+.++.++|.|.++++.|.++|++|......... + .....+.++ ..+ +.+++.+.|.+ +||
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~----~~~-~~~~~~~~L~~-~G~ 67 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK----TQE-DRERAKEILKE-AGY 67 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC----CHH-HHHHHHHHHHH-cCC
Confidence 367788999999999999999999999988766542 2 222234443 112 56788887655 566
No 64
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.18 E-value=1 Score=32.97 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=45.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCC
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 374 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~--ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~ 374 (378)
|.+.+..++|.|.++..+|.+++++|.+...... ++.....|.++. . ...++.+.|.+.-|.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~----~--~~~~~i~~l~~~~~v 65 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ----P--IDEEVIEEIKKIPNI 65 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC----C--CCHHHHHHHHcCCCc
Confidence 5678889999999999999999999998877652 345544455542 1 556777777765553
No 65
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=92.05 E-value=1.1 Score=32.60 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=48.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEeeeecCCcccCHHHHHHHHHhhhCC
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 374 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~ 374 (378)
+.|.+..++|.|.+|+..|.+.++.|.+..+.... +.....|.++ . ...+++.+.|...-|.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~---~---~~~~~l~~~l~~~~~V 65 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD---S---PVPEEVLEELKALPGI 65 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC---C---CCCHHHHHHHHcCCCe
Confidence 56778899999999999999999999999887754 6666666662 1 2467888888877664
No 66
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=91.88 E-value=1.5 Score=33.16 Aligned_cols=61 Identities=26% Similarity=0.465 Sum_probs=44.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
.|.|..+.+||.|.+|+++|.+.|+.|.+..+....+. .++++.. -+.+++.+.|.+ .||.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~------~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV------SDPDKAKEALKE-AGFA 63 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE------CCHHHHHHHHHH-CCCE
Confidence 46677889999999999999999999999887666553 4445532 125677766544 5663
No 67
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=91.75 E-value=0.09 Score=57.39 Aligned_cols=48 Identities=38% Similarity=0.519 Sum_probs=42.3
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHccCCC----CCCCChhhHHHHHHHHHHH
Q 017062 192 LPAKNLMAERRRRKKLNDRLYMLRSVVPK----ISKMDRASILGDAIDYLKE 239 (378)
Q Consensus 192 ~~~~h~~~ER~RR~kmn~~~~~LrslvP~----~~K~dKasIL~dAI~YIk~ 239 (378)
|+.+-..+-|-||.|=|+-|+.|..+||- .+..|||+|+.=||-|++-
T Consensus 46 rkEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 46 RKEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred HhhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 35667788999999999999999999994 4789999999999999863
No 68
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=91.10 E-value=0.13 Score=46.89 Aligned_cols=49 Identities=29% Similarity=0.442 Sum_probs=43.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHccCCC--CCCCChhhHHHHHHHHHHHHHH
Q 017062 194 AKNLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIDYLKELLQ 242 (378)
Q Consensus 194 ~~h~~~ER~RR~kmn~~~~~LrslvP~--~~K~dKasIL~dAI~YIk~Lq~ 242 (378)
..|++.||+|=..||+-|.+||.++|- +.|..|.--|.-|..||..|-+
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 568999999999999999999999994 5788888889999999998854
No 69
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.07 E-value=1.3 Score=32.41 Aligned_cols=59 Identities=25% Similarity=0.363 Sum_probs=42.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEeeeecCCcccCHHHHHHHHHhhhCC
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 374 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~ 374 (378)
|.|.-+.+||.|.+++.+|.+.|+.|.+....... +.....|+++. .+++++.|.+ .||
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~--------~~~~~~~L~~-~G~ 62 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--------IEKAIEVLQE-RGV 62 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC--------HHHHHHHHHH-CCc
Confidence 44556789999999999999999999887665543 55555655531 6677777655 465
No 70
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=90.03 E-value=0.17 Score=49.28 Aligned_cols=53 Identities=32% Similarity=0.382 Sum_probs=46.2
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHHccCCC---CCCCChhhHHHHHHHHHHHHHH
Q 017062 190 KGLPAKNLMAERRRRKKLNDRLYMLRSVVPK---ISKMDRASILGDAIDYLKELLQ 242 (378)
Q Consensus 190 ~~~~~~h~~~ER~RR~kmn~~~~~LrslvP~---~~K~dKasIL~dAI~YIk~Lq~ 242 (378)
+.++.+-+..||+|=-.+|+-|+.||.++|. ..|+.|...|.-|-.||..|++
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 3456677889999999999999999999994 5789999999999999999875
No 71
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=89.91 E-value=2.2 Score=42.12 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=52.0
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC--FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~--~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.+.|.+.|.+|||+...|-++|.++|++|...+.++ .++.+.-.+.+.. +......++|+++|....
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLIFNLETLRADFAALA 74 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCCCCHHHHHHHHHHHH
Confidence 366899999999999999999999999999999999 8886554554432 112345788888877654
No 72
>PRK08577 hypothetical protein; Provisional
Probab=89.52 E-value=2.8 Score=36.58 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=50.4
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
+.+.|.|.+..++|+|.+|+.+|.+.+.++.+.+..+.. +...-.+.++.. + .....+++.+.|.+.-|
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~-~-~~~~l~~l~~~L~~l~~ 125 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLS-K-SDIDLEELEEELKKLEE 125 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeC-C-chhhHHHHHHHHHcCCC
Confidence 368899999999999999999999999999988777653 444444555432 1 12345777777766544
No 73
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=88.96 E-value=3.7 Score=31.63 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=33.6
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEee
Q 017062 309 MFCARRPGLLLSTMRALDSLGLDIQQAVISCFNG-FALDVFRAE 351 (378)
Q Consensus 309 I~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng-~v~~tf~ae 351 (378)
+..+++||.|.+++..+.+.|+.+++..+....+ .--+.|.++
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id 47 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD 47 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE
Confidence 3446799999999999999999999998887654 444455454
No 74
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=88.69 E-value=2.1 Score=42.52 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=47.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEeeeecCCcccCHHHHHHHHHhh
Q 017062 305 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS--CFNGFALDVFRAEQCREGQDVLPKQIKSVLLDT 371 (378)
Q Consensus 305 V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS--~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~ 371 (378)
+.|.+.|++|+|+...|-..|-+.|++|+.++-. +..+.++-.+... +......+.++|+++|...
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~-~~~~~~~~~~~l~~~l~~l 77 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH-AQSAEAASVDTFRQEFQPV 77 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE-cCCCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999999999999885 3333333322222 1111256788888887664
No 75
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=88.46 E-value=2 Score=31.11 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=36.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEee
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAE 351 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n-g~v~~tf~ae 351 (378)
|.|.+..+||.|.++..+|.+.|+.|....+.... +..+..|.++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 34677899999999999999999999888877665 6777776664
No 76
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=88.46 E-value=4.7 Score=31.56 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=42.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEeeeecCCcccCHHHHHHHHHh
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQCREGQDVLPKQIKSVLLD 370 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n-g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~ 370 (378)
|.+....++|.|.+++..+.++|+.+++..+.... +...+.|+++.. + ....+.++++|..
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~--~-~~~~~~~~~~l~~ 65 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE--G-HIEDPNVAEALEE 65 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE--C-CCCCHHHHHHHHH
Confidence 34445678999999999999999999999877663 455677777532 2 2344555555543
No 77
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=88.30 E-value=3 Score=41.24 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=49.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEeeeecCCcccCHHHHHHHHHh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLD 370 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~--ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~ 370 (378)
.|.+.|++++|+...|-..|-++|++|+.++-+.. +++++-.+.+.. .+.....++|+++|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~--~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQL--EGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEe--CCCCCCHHHHHHHHHH
Confidence 47899999999999999999999999999998875 366665555542 2224678888888776
No 78
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.16 E-value=3.7 Score=31.34 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=42.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEeeeecCCcccCHHHHHHHHHh
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF---NGFALDVFRAEQCREGQDVLPKQIKSVLLD 370 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~---ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~ 370 (378)
+++.-+.+||.|.+++..|.+.|..|++...... .+.-...+++.. +... ..+.|.++|.+
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~--e~~~-~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP--MDRS-KENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEE--ecch-HHHHHHHHHhC
Confidence 4455678999999999999999999999877664 234444555532 1111 26677777744
No 79
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=88.13 E-value=0.43 Score=51.09 Aligned_cols=43 Identities=37% Similarity=0.590 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHccCCC----CCCCChhhHHHHHHHHHH
Q 017062 196 NLMAERRRRKKLNDRLYMLRSVVPK----ISKMDRASILGDAIDYLK 238 (378)
Q Consensus 196 h~~~ER~RR~kmn~~~~~LrslvP~----~~K~dKasIL~dAI~YIk 238 (378)
+.---+|-|++||..++.|.+|+|- ++|.||.|||.=++.|++
T Consensus 29 kSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 29 KSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred cCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 4445677899999999999999994 699999999999999975
No 80
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=88.11 E-value=3.3 Score=41.05 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=48.6
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~--ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.+.|.|.|.+|||+..+|-+.|-++|++|...+..+. .+.+.-.+.+. ... ..+.++|+++|.+.+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~-~p~--~~~~~~L~~~L~~l~ 74 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFH-SEE--GLDEDALRAGFAPIA 74 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEe-cCC--CCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999988743 33333233332 122 356888888887654
No 81
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=87.89 E-value=2 Score=32.18 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=48.7
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCCCC
Q 017062 308 HMFCARRPGLLLSTMRALDSLGLDIQQAVISC--FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFHD 376 (378)
Q Consensus 308 kI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~--~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~~ 376 (378)
-+....++|.+.++...|.+.|+.|.+..... .++.....|+++. ..+..+.+.|...-|.+.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~------~~~~~~~~~l~~~~~v~~ 67 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE------PVPDEVLEELRALPGILS 67 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC------CCCHHHHHHHHcCCCccE
Confidence 35678899999999999999999998887655 3577777777742 235688888888777653
No 82
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=87.36 E-value=0.62 Score=48.46 Aligned_cols=43 Identities=40% Similarity=0.533 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHHHHHHHccCCC----CCCCChhhHHHHHHHHHHH
Q 017062 197 LMAERRRRKKLNDRLYMLRSVVPK----ISKMDRASILGDAIDYLKE 239 (378)
Q Consensus 197 ~~~ER~RR~kmn~~~~~LrslvP~----~~K~dKasIL~dAI~YIk~ 239 (378)
.-+-|.||++-|-.|+.|..++|- .+..||++|+.=|..|||-
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 346799999999999999999995 3679999999999999974
No 83
>PRK07334 threonine dehydratase; Provisional
Probab=87.03 E-value=4.9 Score=41.26 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=42.4
Q ss_pred CcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEeee
Q 017062 302 GRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-----NGFALDVFRAEQ 352 (378)
Q Consensus 302 g~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~-----ng~v~~tf~aeq 352 (378)
+..+.|.|.+..|+|+|.+|+.+|.+.+++|.++++... ++...-.|.++.
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V 379 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET 379 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe
Confidence 456889999999999999999999999999999988764 466555666654
No 84
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=86.66 E-value=0.69 Score=34.56 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=45.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
|-+.+..++|+|.+|+..|.+.|..|........++..+..|.++.. ..+++-+.|.+.-|..
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~------~l~~li~~l~~~~~V~ 64 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE------VSEELLEALRAIPGTI 64 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC------CCHHHHHHHHcCCCeE
Confidence 34567889999999999999999999777555444666666655431 5667777777655543
No 85
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.65 E-value=3.3 Score=46.59 Aligned_cols=64 Identities=30% Similarity=0.435 Sum_probs=50.2
Q ss_pred EEEEEeCCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEeeeecCCcccC
Q 017062 295 VEVRIREGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC-FNGFALDVFRAEQCREGQDVL 360 (378)
Q Consensus 295 VeV~v~eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~-~ng~v~~tf~aeq~keg~~v~ 360 (378)
+.++... ....|-|.|+.+|.++..|..++...|++|+.|+|.+ .+|+++++|.+... .|..+.
T Consensus 676 ~~~r~~~-~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~ 740 (867)
T COG2844 676 ISVRPHS-GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE 740 (867)
T ss_pred eeecccC-CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc
Confidence 3444432 3456889999999999999999999999999999875 58899999998533 344444
No 86
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=85.27 E-value=2.5 Score=39.50 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=52.7
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.+.|.+.+++|||+...|-++|.++|..|..++.+..+|.+--++.+. +......+|+.+|-...
T Consensus 8 ~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs----~~~~~~~~le~~L~~l~ 72 (190)
T PRK11589 8 YLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS----GSWNAITLIESTLPLKG 72 (190)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe----CChhHHHHHHHHHHhhh
Confidence 466888999999999999999999999999999999999777777663 33346677777765543
No 87
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=84.20 E-value=1.3 Score=43.49 Aligned_cols=54 Identities=30% Similarity=0.254 Sum_probs=45.5
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 017062 191 GLPAKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIDYLKELLQRI 244 (378)
Q Consensus 191 ~~~~~h~~~ER~RR~kmn~~~~~LrslvP~~---~K~dKasIL~dAI~YIk~Lq~~v 244 (378)
.++..-+..||+|=..||.-|+.||-+||.. .|..|-.-|.-|-.||--|-..+
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 3456678899999999999999999999964 57778888999999998886544
No 88
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=81.06 E-value=1.2 Score=48.91 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=53.0
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017062 191 GLPAKNLMAERRRRKKLNDRLYMLRSVVPKI-----SKMDRASILGDAIDYLKELLQRINDLHNELEST 254 (378)
Q Consensus 191 ~~~~~h~~~ER~RR~kmn~~~~~LrslvP~~-----~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e~~ 254 (378)
.++..|+-+|.+||..++-.|..|-++.-+. .|+.++.-+...+.||..++.+...+++|...+
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~l 718 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSL 718 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhh
Confidence 6678999999999999999999999988653 577777889999999998888777776664443
No 89
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.80 E-value=13 Score=30.63 Aligned_cols=46 Identities=9% Similarity=0.017 Sum_probs=35.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEee
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNG-FALDVFRAE 351 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng-~v~~tf~ae 351 (378)
.|-+..++++|.|.+++..+...|+.+++..+-...+ .--|.|.++
T Consensus 16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD 62 (90)
T cd04931 16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN 62 (90)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE
Confidence 3444557789999999999999999999998887643 334555554
No 90
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=79.76 E-value=19 Score=39.92 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=55.7
Q ss_pred eEEEEEeCC----cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEeeeecCCcccCHHHHHHHH
Q 017062 294 RVEVRIREG----RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-NGFALDVFRAEQCREGQDVLPKQIKSVL 368 (378)
Q Consensus 294 ~VeV~v~eg----~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~-ng~v~~tf~aeq~keg~~v~~e~Lk~~L 368 (378)
-|.|.+... -.+.|.|.+.+|+|+|.+|+.+|-+.+..|.++++... ++.+.-.|.+++ -+.++|...+
T Consensus 596 ~I~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~ii 669 (683)
T TIGR00691 596 IIEVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI------KNYKHLLKIM 669 (683)
T ss_pred EEEEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE------CCHHHHHHHH
Confidence 467777532 25689999999999999999999999999999998876 466655666654 2345555555
Q ss_pred HhhhCCCC
Q 017062 369 LDTAGFHD 376 (378)
Q Consensus 369 l~~~G~~~ 376 (378)
...-...|
T Consensus 670 ~~L~~i~~ 677 (683)
T TIGR00691 670 LKIKTKND 677 (683)
T ss_pred HHHhCCCC
Confidence 44444444
No 91
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=79.74 E-value=13 Score=41.56 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=55.9
Q ss_pred eEEEEEeCC----cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEeeeecCCcccCHHHHHHHH
Q 017062 294 RVEVRIREG----RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQCREGQDVLPKQIKSVL 368 (378)
Q Consensus 294 ~VeV~v~eg----~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n-g~v~~tf~aeq~keg~~v~~e~Lk~~L 368 (378)
-|+|.+..+ -.+.|.|.+.+++|+|.+|..++.+.++.|.++++.... +.+.-.|.+++ -+.++|...+
T Consensus 612 ~i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~ 685 (702)
T PRK11092 612 FMAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIM 685 (702)
T ss_pred eEEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHH
Confidence 467877532 256899999999999999999999999999999987764 45555566654 2345555555
Q ss_pred HhhhCCCCC
Q 017062 369 LDTAGFHDV 377 (378)
Q Consensus 369 l~~~G~~~~ 377 (378)
...-+..|+
T Consensus 686 ~~Lr~i~~V 694 (702)
T PRK11092 686 RKIRVMPDV 694 (702)
T ss_pred HHHhCCCCc
Confidence 554444443
No 92
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=79.33 E-value=15 Score=41.36 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=47.1
Q ss_pred eEEEEEeCC----cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEeee
Q 017062 294 RVEVRIREG----RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQ 352 (378)
Q Consensus 294 ~VeV~v~eg----~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~--ng~v~~tf~aeq 352 (378)
-|+|.+... -.+.|.|.+..|+|+|.+|..+|.+.++.|.++++... ++.+.-.|.+++
T Consensus 652 ~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV 716 (743)
T PRK10872 652 IVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI 716 (743)
T ss_pred EEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE
Confidence 477877531 24689999999999999999999999999999998765 466666666764
No 93
>PRK06382 threonine dehydratase; Provisional
Probab=75.60 E-value=14 Score=38.13 Aligned_cols=71 Identities=25% Similarity=0.297 Sum_probs=51.8
Q ss_pred CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-----eeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 301 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS-----CFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 301 eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS-----~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
.++.+.+.|.-+.+||.|.+|++.|.+.+.+|++.... ...+...-+|+++.. .....++|.++|.+ .||+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~---~~~~~~~v~~~L~~-~Gy~ 402 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR---GQDHLDRILNALRE-MGYK 402 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC---CHHHHHHHHHHHHH-CCCC
Confidence 35677888888999999999999999999999988764 223566667777642 12344577777554 5664
No 94
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=75.54 E-value=4.8 Score=33.67 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=51.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhh
Q 017062 305 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDT 371 (378)
Q Consensus 305 V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~ 371 (378)
+.|+|.-.+|+|+-..|..+|-++|++|...+=+...+++--.+.+...+ ...+...++..|...
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~--~~~d~~~lr~~l~~~ 68 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK--EVVDFAALRDELAAE 68 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh--HhccHHHHHHHHHHH
Confidence 45777778899999999999999999999999999999888877775432 246666676665543
No 95
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=74.63 E-value=15 Score=40.82 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=54.3
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 309 MFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 309 I~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
+.|++++|+|+++.-+|--+++.|.+|++.+ +|..+..|.+. ..-|..-++..+++.+...+.
T Consensus 552 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 552 IWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVR-ANGPQDFDPQEFLQAYKSGVY 614 (693)
T ss_pred EecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEe-cCCCCCCChHHHHHHHHHhhc
Confidence 4458999999999999999999999999999 88888888885 356778899999998876543
No 96
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=74.63 E-value=19 Score=32.82 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=47.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEeeeecCCcccCHHHHHHHHHhh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDT 371 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~ 371 (378)
.|.|.-..+||.|.+|..+|...|+.|.+..+...+ +...-+|++. +.+...++|..-|.+.
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~d~~~i~qi~kQl~Kl 66 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----GDDKVLEQITKQLNKL 66 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----CCHHHHHHHHHHHhcC
Confidence 477788899999999999999999999999888765 5555666664 2345566776666553
No 97
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.15 E-value=21 Score=27.06 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=41.4
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 309 MFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 309 I~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n-g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
+.=+.|||-|.+++++|.+ |.+|+..+....+ +...-.+.++.. ..-..++|.++|.+ .||.
T Consensus 3 v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~---~~~~~~~i~~~L~~-~G~~ 65 (68)
T cd04885 3 VTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP---DREDLAELKERLEA-LGYP 65 (68)
T ss_pred EECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC---CHHHHHHHHHHHHH-cCCC
Confidence 4457899999999999999 9999988776643 222222333321 12466777777765 6664
No 98
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=73.38 E-value=18 Score=43.73 Aligned_cols=69 Identities=13% Similarity=0.203 Sum_probs=51.5
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-----CEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-----GFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n-----g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
..+.++|+...++..|+++|-+|+++||.|+...-..+. ...+|-|.+.. ..+.....+.+++.|.+++
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~-~~~~~~~~~~~~~~~~~a~ 561 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQY-PDGDALDLDDIRERFEEAF 561 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEec-CCCccccHHHHHHHHHHHH
Confidence 468999999999999999999999999999987544432 26777777753 3444466666766665543
No 99
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=71.99 E-value=18 Score=36.06 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=48.6
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~--ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.+.+.+.|+.++|+...|-..|-+.|..|++++-... .|+++-- ++=..++....-+.|++.|-..+
T Consensus 7 ~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR--~~f~~~~~~~~~~~l~~~f~~~a 75 (287)
T COG0788 7 TFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMR--VEFEGEGGPLDREALRAAFAPLA 75 (287)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEE--EEEecCCCcccHHHHHHHHHHHH
Confidence 4678999999999999999999999999999877642 3333332 22222344577888888776644
No 100
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=71.78 E-value=24 Score=32.33 Aligned_cols=61 Identities=16% Similarity=0.303 Sum_probs=46.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEeeeecCCcccCHHHHHHHHHh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLD 370 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~ 370 (378)
.|.|.-..+||.|.+|...|...|+.|.+..+.... +....+|++. +.+...++|..-|.+
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~----~~~~~i~qi~kQl~K 66 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS----GDEQVIEQITKQLNK 66 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE----CCHHHHHHHHHHHhc
Confidence 477778899999999999999999999999887664 5566666664 334555666655544
No 101
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=71.72 E-value=22 Score=27.69 Aligned_cols=56 Identities=7% Similarity=0.053 Sum_probs=39.5
Q ss_pred EcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEeeeecCCcccCHHHHHHHHHh
Q 017062 310 FCARRPGLLLSTMRALDSLGLDIQQAVISCFNG-FALDVFRAEQCREGQDVLPKQIKSVLLD 370 (378)
Q Consensus 310 ~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng-~v~~tf~aeq~keg~~v~~e~Lk~~Ll~ 370 (378)
..++++|.|.+++..+...|+.+++..+-+..+ ..-|.|.++. . | ..+.++++|..
T Consensus 6 ~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~-~-~---~~~~~~~~l~~ 62 (74)
T cd04904 6 SLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC-E-V---DRGDLDQLISS 62 (74)
T ss_pred EeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE-E-c---ChHHHHHHHHH
Confidence 346789999999999999999999998887765 3345555643 2 3 23345555544
No 102
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=67.71 E-value=34 Score=26.12 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=40.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 313 RRPGLLLSTMRALDSLGLDIQQAVISC--FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 313 rr~GlL~~IL~ALEeLgLdV~sA~iS~--~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.++|.|.+|+..+.--|+.|.+-++.. .++..-.++.+. |.+...++|..-|.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~----~~~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS----GDDREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE----S-CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe----eCchhHHHHHHHHhccC
Confidence 368999999999999999999999988 455655565553 33456677777666543
No 103
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=64.73 E-value=34 Score=27.58 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=43.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEeeeecCCcccCHHHHHHHHHh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLD 370 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~ 370 (378)
.|.+.-..+||.|.+|..++.-.|..|.+-++...+ +..--++.+. |.+...++|..-|.+
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~----~~~~~i~qi~kQL~K 66 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV----CTENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE----CCHHHHHHHHHHHhC
Confidence 577888899999999999999999999998888655 3333344432 334555566555544
No 104
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=64.62 E-value=37 Score=34.37 Aligned_cols=70 Identities=24% Similarity=0.353 Sum_probs=51.2
Q ss_pred CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCC
Q 017062 301 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-----NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 374 (378)
Q Consensus 301 eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~-----ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~ 374 (378)
+|+.+.+.|.=+++||.|.++++.+.+.|.+|++...... .+...-.+.++.. .....++|.++|.+ .||
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~---~~~~~~~i~~~L~~-~G~ 376 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR---GKEHLDEILKILRD-MGY 376 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC---CHHHHHHHHHHHHH-cCC
Confidence 4677788888899999999999999999999999866532 2455556666542 13455677777765 444
No 105
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=62.85 E-value=42 Score=30.32 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=55.1
Q ss_pred CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 301 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS-CFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 301 eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS-~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
+++.+.+.+.-.+|-|.|++++.++...++.|.+.+=+ +.+|+.--++..... +-+-+.+.|-.+|.+.-|
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s--sm~~~V~~ii~kl~k~e~ 140 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS--SMEKDVDKIIEKLRKVEG 140 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch--hhhhhHHHHHHHHhcccc
Confidence 34567788888999999999999999999999997655 678888888777543 335677778777766433
No 106
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=62.09 E-value=31 Score=28.56 Aligned_cols=62 Identities=11% Similarity=0.013 Sum_probs=44.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE--EEEEEeeeecCCcccCHHHHHHHHHh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFA--LDVFRAEQCREGQDVLPKQIKSVLLD 370 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v--~~tf~aeq~keg~~v~~e~Lk~~Ll~ 370 (378)
.|.+.-..+||.|.+|-.++.-.|+.|.+.++....+.- --+|.+. .|.+...++|.+-|.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~---~~d~~~ieqI~kQL~K 67 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD---IQDDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe---CCCHHHHHHHHHHHhC
Confidence 477788899999999999999999999998888765433 3344332 1344556666666654
No 107
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=61.76 E-value=56 Score=26.26 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=44.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEeeeecCCcccCHHHHHHHHHhh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDT 371 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~ 371 (378)
.|.|.-..+||.|.+|+..+.--|+.|.+-++.... +..--++.+. .+...++|.+-|.+.
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-----~~~~i~ql~kQL~KL 67 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-----SERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-----CCchHHHHHHHHhcC
Confidence 467777899999999999999999999998888753 4444444442 256667776666554
No 108
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=61.21 E-value=49 Score=30.97 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=46.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC----CEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 305 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN----GFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 305 V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n----g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
+.|.+.-.+|||+..+|-++|.++|++|...+.-+.. +.-++..+++.. --.....++|+.+|.+.+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~-lP~~~~~~~L~~~l~~l~ 166 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAH-SPASQDAANIEQAFKALC 166 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEE-cCCCCCHHHHHHHHHHHH
Confidence 5567777899999999999999999999988777664 322333333221 112456888888877654
No 109
>PRK08526 threonine dehydratase; Provisional
Probab=60.99 E-value=52 Score=34.09 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=52.4
Q ss_pred CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCE-----EEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 301 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGF-----ALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 301 eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~-----v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
+|+.+.+.+.=+.|||-|.+++..+-+.+.+|+.......... +.-.+.+|.. ..-..++|.+.|.+ .||.
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~---~~~~~~~~~~~l~~-~g~~ 398 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK---GKEHQEEIRKILTE-KGFN 398 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC---CHHHHHHHHHHHHH-CCCC
Confidence 5788999999999999999999999999999999988664332 3333444432 23466777777754 6664
No 110
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=60.31 E-value=44 Score=30.98 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=45.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC--FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~--~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.|.|.-.++||+|.+|...|...|++|.+.++.. ..+..--++.+. +.+...++|+..|.+.+
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~----~~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP----GDDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE----CCHHHHHHHHHHHHHHh
Confidence 4777888999999999999999999999998876 334443334332 22222788888877654
No 111
>PRK08198 threonine dehydratase; Provisional
Probab=58.09 E-value=63 Score=33.00 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=50.1
Q ss_pred CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCC
Q 017062 301 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-----NGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 374 (378)
Q Consensus 301 eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~-----ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~ 374 (378)
.++.+.+.|.=+++||.|.+++..|.+.|.+|+..+.... .+.+.-.+.++.. + .-..++|.+.|.+ .||
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~--~-~~~~~~l~~~L~~-~G~ 398 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETR--G-PEHIEEILDALRD-AGY 398 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeC--C-HHHHHHHHHHHHH-CCC
Confidence 4567788888899999999999999999999998887653 2445555555531 1 1255677777655 554
No 112
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.48 E-value=1.1e+02 Score=24.34 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=39.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n-g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
.+.+.=+.+||-|.+++++|- +.+|......... +...-.+.++. ++ ..-..+++.++|.+ .||.
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~-~~-~~~~~~~i~~~L~~-~G~~ 68 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV-AN-GAEELAELLEDLKS-AGYE 68 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe-CC-cHHHHHHHHHHHHH-CCCC
Confidence 366677899999999999999 6677765554432 22222333332 11 13456777777644 6663
No 113
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=48.55 E-value=9.7 Score=34.94 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCC--CCCChhhHHHHHHHHHHHH
Q 017062 198 MAERRRRKKLNDRLYMLRSVVPKI--SKMDRASILGDAIDYLKEL 240 (378)
Q Consensus 198 ~~ER~RR~kmn~~~~~LrslvP~~--~K~dKasIL~dAI~YIk~L 240 (378)
..||.|.+++++.+.-|++|+|.. .++.+.--|.-+-.||..|
T Consensus 28 ~~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~ 72 (173)
T KOG4447|consen 28 RKERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSL 72 (173)
T ss_pred HHHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhH
Confidence 369999999999999999999963 3333333244444555444
No 114
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=47.78 E-value=1.1e+02 Score=27.42 Aligned_cols=45 Identities=24% Similarity=0.396 Sum_probs=37.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEe
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRA 350 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~a 350 (378)
.|+++-+.|||-|..+..+|.+.|+.+.-.+|.-.++|-+.-..+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV 49 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVV 49 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEc
Confidence 488899999999999999999999999998888777765554433
No 115
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.63 E-value=1.1e+02 Score=24.06 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=31.7
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEee
Q 017062 312 ARRPGLLLSTMRALDSLGLDIQQAVISCFNG-FALDVFRAE 351 (378)
Q Consensus 312 ~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng-~v~~tf~ae 351 (378)
+.++|.|.+++..++..|+.+.+..+-+..+ .--|.|.++
T Consensus 8 ~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id 48 (74)
T cd04929 8 KNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVD 48 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE
Confidence 6789999999999999999999998887633 334555554
No 116
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.00 E-value=1.3e+02 Score=25.87 Aligned_cols=42 Identities=5% Similarity=-0.148 Sum_probs=32.3
Q ss_pred EcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEee
Q 017062 310 FCARRPGLLLSTMRALDSLGLDIQQAVISCFNG-FALDVFRAE 351 (378)
Q Consensus 310 ~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng-~v~~tf~ae 351 (378)
...+++|.|.++|..+...|+.+++..+-+..+ .--|.|.++
T Consensus 47 sl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfId 89 (115)
T cd04930 47 SLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVR 89 (115)
T ss_pred EeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEE
Confidence 336789999999999999999999998887633 233445554
No 117
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=45.29 E-value=22 Score=24.30 Aligned_cols=17 Identities=47% Similarity=0.716 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHc
Q 017062 200 ERRRRKKLNDRLYMLRS 216 (378)
Q Consensus 200 ER~RR~kmn~~~~~Lrs 216 (378)
=|+||++++.++..||.
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 37889999999999985
No 118
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=45.00 E-value=8 Score=42.93 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=49.8
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 017062 192 LPAKNLMAERRRRKKLNDRLYMLRSVVPKI-----SKMDRASILGDAIDYLKELLQRINDLHNELES 253 (378)
Q Consensus 192 ~~~~h~~~ER~RR~kmn~~~~~LrslvP~~-----~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e~ 253 (378)
+.+.|+.+|||||-...++|..|-.|.|.+ .+..+++||. +.|+.+++.-+.+.+..+.
T Consensus 787 v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~ 850 (856)
T KOG3582|consen 787 VSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEG 850 (856)
T ss_pred eecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhh
Confidence 468899999999999999999999999953 5678899999 7888888888877776543
No 119
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=42.23 E-value=1.1e+02 Score=21.32 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=26.4
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 017062 307 IHMFCA---RRPGLLLSTMRALDSLGLDIQQAVISC 339 (378)
Q Consensus 307 IkI~C~---rr~GlL~~IL~ALEeLgLdV~sA~iS~ 339 (378)
|+|.+. .+++.+.+++++|.+.++.|.....+.
T Consensus 3 i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 3 VSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 556544 568899999999999999998876644
No 120
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=41.70 E-value=1.1e+02 Score=20.76 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEe
Q 017062 314 RPGLLLSTMRALDSLGLDIQQAVISC 339 (378)
Q Consensus 314 r~GlL~~IL~ALEeLgLdV~sA~iS~ 339 (378)
.++.+.+++++|.+.++.|.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 67899999999999999997765543
No 121
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=41.47 E-value=1.3e+02 Score=21.78 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=25.9
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 017062 307 IHMFCA---RRPGLLLSTMRALDSLGLDIQQAVISC 339 (378)
Q Consensus 307 IkI~C~---rr~GlL~~IL~ALEeLgLdV~sA~iS~ 339 (378)
|+|.+. ..++.+.+++++|.+.|+.|.-.+.+.
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 555554 468999999999999999997665444
No 122
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=39.11 E-value=1.2e+02 Score=23.60 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=33.4
Q ss_pred cceEEEEEeCCcEEEEEEEcCCC------CChHHHHHHHHHhCCCeEEEEEEEee
Q 017062 292 AARVEVRIREGRAVNIHMFCARR------PGLLLSTMRALDSLGLDIQQAVISCF 340 (378)
Q Consensus 292 ~~~VeV~v~eg~~V~IkI~C~rr------~GlL~~IL~ALEeLgLdV~sA~iS~~ 340 (378)
.+.|.++..+ +.+.|.|.+... ..-+..+-++|...|+.+.+.+++.-
T Consensus 26 ~v~v~l~~~~-~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 26 SVEVKLRLQG-GNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp -EEEEEEEET-TEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred cEEEEEEEeC-CEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 4567777664 578899999753 24567888999999999998877643
No 123
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=38.40 E-value=50 Score=24.11 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 017062 313 RRPGLLLSTMRALDSLGLDIQQAVI 337 (378)
Q Consensus 313 rr~GlL~~IL~ALEeLgLdV~sA~i 337 (378)
.++|...+|+++|++.|+.|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 4689999999999999999998844
No 124
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=37.53 E-value=2.7e+02 Score=31.45 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=44.8
Q ss_pred ceEEEEEeCC----cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEee
Q 017062 293 ARVEVRIREG----RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNG-FALDVFRAE 351 (378)
Q Consensus 293 ~~VeV~v~eg----~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng-~v~~tf~ae 351 (378)
--|+|.+... -.+.|.|.-.+|+|+|.+|+++|-+.+..|.+++..+..+ .+.-.|.++
T Consensus 612 r~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~ 675 (701)
T COG0317 612 RVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE 675 (701)
T ss_pred eEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE
Confidence 3467776532 3577888889999999999999999999999999988744 333344444
No 125
>PRK08639 threonine dehydratase; Validated
Probab=34.30 E-value=2e+02 Score=29.82 Aligned_cols=71 Identities=15% Similarity=0.003 Sum_probs=46.4
Q ss_pred CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC--EEEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 301 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNG--FALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 301 eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng--~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
+|+.+.+.+.=+.|||-|.++++.+-..+-+|+..+.-...+ ...-.+.+|.. + .-..++|.+.|.+ .||.
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~-~--~~h~~~i~~~L~~-~Gy~ 405 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELK-D--AEDYDGLIERMEA-FGPS 405 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeC-C--HHHHHHHHHHHHH-CCCc
Confidence 578888999999999999999996666655888776553222 11112233321 1 2356788887766 6763
No 126
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=34.16 E-value=2.3e+02 Score=23.97 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=42.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHh
Q 017062 305 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLD 370 (378)
Q Consensus 305 V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~ 370 (378)
..|.+.-..+||+|.+|.-.+.--|..|.+.++...+..-+.-+.+-.. + +-..++|..-|.+
T Consensus 9 ~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~--~~~i~Qi~kQL~K 71 (96)
T PRK08178 9 VILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D--DQRLEQMISQIEK 71 (96)
T ss_pred EEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C--chHHHHHHHHHhC
Confidence 4578888899999999999999999999988877665433332222222 2 3355565555544
No 127
>PRK11899 prephenate dehydratase; Provisional
Probab=33.87 E-value=2.7e+02 Score=27.55 Aligned_cols=60 Identities=15% Similarity=0.240 Sum_probs=42.6
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEeeeecCCcccCHHHHHHHHHhh
Q 017062 309 MFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-GFALDVFRAEQCREGQDVLPKQIKSVLLDT 371 (378)
Q Consensus 309 I~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n-g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~ 371 (378)
+..+++||.|.++|.++...|+.++...+-... ...-|.|.++. +| ......++++|...
T Consensus 199 ~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg-~~~d~~v~~aL~~l 259 (279)
T PRK11899 199 FRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EG-HPEDRNVALALEEL 259 (279)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--EC-CCCCHHHHHHHHHH
Confidence 334689999999999999999999999988774 44566666654 23 23334555555543
No 128
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=32.21 E-value=2.6e+02 Score=27.13 Aligned_cols=68 Identities=9% Similarity=0.052 Sum_probs=45.9
Q ss_pred cEEEEEEEcCCCCC--hHHHHHHHHHhCCCeEEEEEEEeeC--CE--EEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 303 RAVNIHMFCARRPG--LLLSTMRALDSLGLDIQQAVISCFN--GF--ALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 303 ~~V~IkI~C~rr~G--lL~~IL~ALEeLgLdV~sA~iS~~n--g~--v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
..+.++|.|.+.+. ....+++.|++.++.+.+.++.... +. +...+.+.. -.+...+++.+.|...-|
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~---~~~~~le~iv~~L~~~pg 214 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHA---DYRKTRELIISRIGDNDN 214 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecC---CchhhHHHHHHHHhCCCC
Confidence 34678899987654 5788899999999999999997653 32 222333322 134567777777766544
No 129
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=31.38 E-value=1.3e+02 Score=22.30 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=23.2
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeEEEE
Q 017062 307 IHMFCA---RRPGLLLSTMRALDSLGLDIQQA 335 (378)
Q Consensus 307 IkI~C~---rr~GlL~~IL~ALEeLgLdV~sA 335 (378)
|.|... ..+|.+.+++.+|.+.++.|...
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~ 35 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEILQT 35 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEEEE
Confidence 444443 57999999999999999999733
No 130
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.68 E-value=2.2e+02 Score=20.62 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=22.6
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 017062 313 RRPGLLLSTMRALDSLGLDIQQAVISC 339 (378)
Q Consensus 313 rr~GlL~~IL~ALEeLgLdV~sA~iS~ 339 (378)
.+++.+.+++++|.+.|++|.-...+.
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 468999999999999999997665444
No 131
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=29.53 E-value=1.3e+02 Score=29.47 Aligned_cols=48 Identities=19% Similarity=0.341 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHccCCC--------------------CCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 017062 204 RKKLNDRLYMLRSVVPK--------------------ISKMDRASILGDAIDYLKELLQRINDLHNELES 253 (378)
Q Consensus 204 R~kmn~~~~~LrslvP~--------------------~~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e~ 253 (378)
|.-|..+|..|+..=.. ...|-.+.||.|+. ||++++||++||.++..
T Consensus 6 ~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~A--L~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQA--LKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 44566666666665532 12344444454443 78899999999998744
No 132
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=29.09 E-value=2.9e+02 Score=28.62 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=47.9
Q ss_pred CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 301 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 301 eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
+|+.+.+.+.=+.|||-|.++++.+-..+.+|+..+.-... +...-.+.+|.. + .-..++|.++|.+ .||.
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~-~--~~h~~~i~~~L~~-~Gy~ 394 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELN-D--KEDFAGLLERMAA-ADIH 394 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeC-C--HHHHHHHHHHHHH-CCCC
Confidence 47888899999999999999999777777799877665321 223233444432 1 2455777777755 5663
No 133
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=26.50 E-value=91 Score=34.91 Aligned_cols=43 Identities=14% Similarity=0.023 Sum_probs=39.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEee
Q 017062 305 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAE 351 (378)
Q Consensus 305 V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~ae 351 (378)
..++|-...|+|+|-.|+.+|. ||.-|.+++.+..++..|.+.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 3588889999999999999999 999999999999999998775
No 134
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.13 E-value=1e+02 Score=23.53 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 017062 201 RRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLH 248 (378)
Q Consensus 201 R~RR~kmn~~~~~LrslvP~~~K~dKasIL~dAI~YIk~Lq~~v~~L~ 248 (378)
|.-|-.+...+..+..++- ..+ .++|.+||+++-+.++.+.
T Consensus 17 R~~RHD~~NhLqvI~gllq-lg~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQ-LGK------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-CCC------HHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888883 344 4568999999999888773
No 135
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.82 E-value=2.2e+02 Score=25.56 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 017062 201 RRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPT 256 (378)
Q Consensus 201 R~RR~kmn~~~~~LrslvP~~~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e~~~~ 256 (378)
+...+.+...+..|++.++ ..+....|.+|+++++.|+.+++.+..
T Consensus 92 ~~~~k~l~~eL~~L~~~~t----------~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 92 KKEVKSLEAELASLSSEPT----------NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334556666666666665 678999999999999999999988774
No 136
>PRK08818 prephenate dehydrogenase; Provisional
Probab=24.79 E-value=2.4e+02 Score=29.18 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=30.5
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEee
Q 017062 313 RRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAE 351 (378)
Q Consensus 313 rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~ae 351 (378)
++||.|.+|+..|-..|+++.+..++........ |.++
T Consensus 305 d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~ 342 (370)
T PRK08818 305 DRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIG 342 (370)
T ss_pred CCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEE
Confidence 7899999999999999999999999555444333 5554
No 137
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=24.34 E-value=1.9e+02 Score=22.26 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=24.1
Q ss_pred EEEEc---CCCCChHHHHHHHHHhCCCeEEEEE
Q 017062 307 IHMFC---ARRPGLLLSTMRALDSLGLDIQQAV 336 (378)
Q Consensus 307 IkI~C---~rr~GlL~~IL~ALEeLgLdV~sA~ 336 (378)
|+|.+ ...+|.+.+++++|.+.|+.|....
T Consensus 4 Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 4 LNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 45543 3468999999999999999997774
No 138
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=23.59 E-value=1.3e+02 Score=27.32 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017062 195 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELEST 254 (378)
Q Consensus 195 ~h~~~ER~RR~kmn~~~~~LrslvP~~~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e~~ 254 (378)
+....+|+.|.++.+.-.+++++ +- .++=.+|.| |++++.+|++|++++
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~i----S~------qDeFAkwaK-l~Rk~~kl~~el~~~ 85 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAI----SA------QDEFAKWAK-LNRKLDKLEEELEKL 85 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-----T------TTSHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcC----Cc------HHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34556777778887777777765 22 335666766 788888888877654
No 139
>PRK12483 threonine dehydratase; Reviewed
Probab=23.54 E-value=4.9e+02 Score=28.15 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=45.4
Q ss_pred CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEeeeecCCcccCH-HHHHHHHHhhhCCC
Q 017062 301 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNG-FALDVFRAEQCREGQDVLP-KQIKSVLLDTAGFH 375 (378)
Q Consensus 301 eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng-~v~~tf~aeq~keg~~v~~-e~Lk~~Ll~~~G~~ 375 (378)
+|+.+.+.|.=+.|||-|.++++.|-+. +|+.......+. ...-.+.++.. + .-.. ++|.++|.+ .||+
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~-~--~~~~~~~i~~~l~~-~g~~ 412 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTH-P--RHDPRAQLLASLRA-QGFP 412 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeC-C--hhhhHHHHHHHHHH-CCCC
Confidence 5788889999999999999999999988 887776664332 22222333321 1 2233 667777655 4553
No 140
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=22.93 E-value=4.6e+02 Score=28.07 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=43.7
Q ss_pred CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 301 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNG-FALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 301 eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng-~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
+++.+.+.+.=+.|||-|.+++++|-. .+|+..+.--.+. ...-.+.++. + ..-..++|.+.|.+ .||.
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~-~--~~~~~~~l~~~L~~-~Gy~ 391 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQL-S--NPQERQEILARLND-GGYS 391 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEe-C--CHHHHHHHHHHHHH-cCCC
Confidence 568899999999999999999999997 4666555543322 2222223332 1 12355667776655 5553
No 141
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.69 E-value=1.1e+02 Score=24.70 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC
Q 017062 230 LGDAIDYLKELLQRINDLHNELESTP 255 (378)
Q Consensus 230 L~dAI~YIk~Lq~~v~~L~~e~e~~~ 255 (378)
+..||+-|.-||-+|++|+++..++.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 67899999999999999998876543
No 142
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=22.42 E-value=98 Score=24.72 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 017062 230 LGDAIDYLKELLQRINDLHNELE 252 (378)
Q Consensus 230 L~dAI~YIk~Lq~~v~~L~~e~e 252 (378)
+..||+-|..||.++++|+++..
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998743
No 143
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.25 E-value=3e+02 Score=19.64 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=25.1
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 017062 307 IHMFCA---RRPGLLLSTMRALDSLGLDIQQAVISC 339 (378)
Q Consensus 307 IkI~C~---rr~GlL~~IL~ALEeLgLdV~sA~iS~ 339 (378)
|.|.+. +.++.+.+++++|.+.++.|.-...+.
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 4 VAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 445553 468999999999999999996665443
No 144
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=22.15 E-value=1.3e+02 Score=22.87 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=24.8
Q ss_pred EEEEEcC----CCCChHHHHHHHHHhCCCeEEEEE
Q 017062 306 NIHMFCA----RRPGLLLSTMRALDSLGLDIQQAV 336 (378)
Q Consensus 306 ~IkI~C~----rr~GlL~~IL~ALEeLgLdV~sA~ 336 (378)
.|+|..+ ..+|.+.+++.+|.+.|+.|...+
T Consensus 8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 3555555 378999999999999999998776
No 145
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.96 E-value=3.1e+02 Score=19.65 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=25.4
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 017062 307 IHMFCA---RRPGLLLSTMRALDSLGLDIQQAVISC 339 (378)
Q Consensus 307 IkI~C~---rr~GlL~~IL~ALEeLgLdV~sA~iS~ 339 (378)
|.|.+. ++++.+.+++.+|.+.+++|.-.+.+.
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 4 IMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 455553 468999999999999999997665433
No 146
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=21.87 E-value=3.8e+02 Score=24.02 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=32.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCC--eEEEEEEEeeCCEEEEEEEee
Q 017062 307 IHMFCARRPGLLLSTMRALDSLGL--DIQQAVISCFNGFALDVFRAE 351 (378)
Q Consensus 307 IkI~C~rr~GlL~~IL~ALEeLgL--dV~sA~iS~~ng~v~~tf~ae 351 (378)
+-|.-+.+||-|++|+++|-..++ |-+-|.++.- +..+-+++++
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~e 117 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVE 117 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEhh
Confidence 567778999999999999997754 5566655555 6666666664
No 147
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=21.76 E-value=75 Score=28.99 Aligned_cols=27 Identities=30% Similarity=0.172 Sum_probs=19.8
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHccC
Q 017062 192 LPAKNLMAERRRRKKLNDRLYMLRSVV 218 (378)
Q Consensus 192 ~~~~h~~~ER~RR~kmn~~~~~Lrslv 218 (378)
.+.++...||+||.=-..-|.-||..=
T Consensus 11 ErEnnk~RERrRRAIaakIfaGLR~~G 37 (150)
T PF05687_consen 11 ERENNKRRERRRRAIAAKIFAGLRAHG 37 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778899999966666677777653
No 148
>PRK11020 hypothetical protein; Provisional
Probab=21.15 E-value=1.5e+02 Score=26.00 Aligned_cols=52 Identities=23% Similarity=0.187 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 017062 200 ERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNEL 251 (378)
Q Consensus 200 ER~RR~kmn~~~~~LrslvP~~~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~ 251 (378)
+++-=++|+++++.+|-=++.....+.+.++..--+-|..|..+|+.|+...
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445578999999998888777777777777777777777777777776643
No 149
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=20.59 E-value=2.6e+02 Score=29.85 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=32.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN 341 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n 341 (378)
.++|.|.+|-|+-.+|+..|-..++++....|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 478999999999999999999999999999996663
No 150
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=20.56 E-value=4.3e+02 Score=23.87 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHhCCCeEEEEE-----------EEeeCCEEEEEEEeeeecCCc-ccCHHHHHHHHHhhhCCC
Q 017062 316 GLLLSTMRALDSLGLDIQQAV-----------ISCFNGFALDVFRAEQCREGQ-DVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 316 GlL~~IL~ALEeLgLdV~sA~-----------iS~~ng~v~~tf~aeq~keg~-~v~~e~Lk~~Ll~~~G~~ 375 (378)
..--+++..|++.|.-|+.+- |...++.++.+|-|+..+++. -+..++|...+-=+-.|+
T Consensus 8 ~~EReLv~~L~e~GfAvvR~paSG~sk~p~pDivA~~g~~~l~iE~K~~~~~kiYl~~e~ve~L~~FA~~fG 79 (137)
T COG1591 8 RFERELVRILWERGFAVVRAPASGGSKRPLPDIVAGNGGVYLAIEVKSRRETKIYLDKEQVEKLVEFARRFG 79 (137)
T ss_pred hHHHHHHHHHHhcCceEEEcccCCCCCCCCCCEEecCCCEEEEEEEEeccCCcEEEcHHHHHHHHHHHHHcC
Confidence 344578899999999999982 233467788889998776553 568888887765444443
No 151
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.31 E-value=1.3e+02 Score=23.70 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017062 227 ASILGDAIDYLKELLQRINDLHNELEST 254 (378)
Q Consensus 227 asIL~dAI~YIk~Lq~~v~~L~~e~e~~ 254 (378)
++-|++|+.-|.+|+.+++.|+.+++..
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3459999999999999999999987654
No 152
>PRK09224 threonine dehydratase; Reviewed
Probab=20.24 E-value=6.8e+02 Score=26.75 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=43.1
Q ss_pred CCcEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 301 EGRAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNG-FALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 301 eg~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng-~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
+++.+.+.+.=+.|||-|.++++.|- +.+|+..+.-..+. ...-.+.++. ++ .+-..++|.+.|.+ .||.
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~-~~-~~~~~~~i~~~L~~-~gy~ 395 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQL-SR-GQEERAEIIAQLRA-HGYP 395 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEe-CC-hhhHHHHHHHHHHH-cCCC
Confidence 46788899999999999999999998 56666655544221 2222223332 11 11125677777755 5553
No 153
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=20.17 E-value=3.8e+02 Score=20.54 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017062 197 LMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELEST 254 (378)
Q Consensus 197 ~~~ER~RR~kmn~~~~~LrslvP~~~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e~~ 254 (378)
+..|++=|......+..| ..|+..++.+|-.-+.+...+|+.|+.+++.+
T Consensus 10 i~~E~ki~~Gae~m~~~~--------~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l 59 (70)
T PF02185_consen 10 IDKELKIKEGAENMLQAY--------STDKKKVLSEAESQLRESNQKIELLREQLEKL 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554454444444444 34444466666666666666666666665544
Done!